BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9430
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8MUR4|RL13A_CHOPR 60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A
PE=2 SV=1
Length = 204
Score = 245 bits (626), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 112/167 (67%), Positives = 137/167 (82%)
Query: 82 FWKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKR 141
F I+IDGRGHLLGRLA+++AK +L GN+VVVVR E LNISGNFFRNKLK+++FL KR
Sbjct: 4 FSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKR 63
Query: 142 CNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVP 201
CNVNPARGPFH+RAP++I WKTVRGM PHK +RG AL+RL+ Y+G PP Y R+R+ VP
Sbjct: 64 CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVP 123
Query: 202 TALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKI 248
ALR CLKPGR YC VGR+SHEVGWKY+ +VR LE KR+ K++ K+
Sbjct: 124 AALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKV 170
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 75/85 (88%)
Query: 1 MPGISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFL 60
M G S K I+IDGRGHLLGRLA+++AK +L GN+VVVVR E LNISGNFFRNKLK+++FL
Sbjct: 1 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFL 60
Query: 61 NKRCNVNPARGPFHYRAPARIFWKT 85
KRCNVNPARGPFH+RAP++I WKT
Sbjct: 61 RKRCNVNPARGPFHFRAPSKILWKT 85
>sp|Q962U0|RL13A_SPOFR 60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2
SV=1
Length = 204
Score = 244 bits (624), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 111/165 (67%), Positives = 136/165 (82%)
Query: 82 FWKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKR 141
F I+IDGRGHLLGRLA+++AK +L GN+VVVVR E +NISGNFFRNKLK+++FL KR
Sbjct: 4 FSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKR 63
Query: 142 CNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVP 201
CNVNPARGPFH+RAP++I WKTVRGM PHK +RG AL+RL+ Y+G PP Y R+R+ VP
Sbjct: 64 CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVP 123
Query: 202 TALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIE 246
ALR CLKPGR YC VGR+SHEVGWKY+ +VR LE KR+ KS++
Sbjct: 124 AALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKSVK 168
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 75/85 (88%)
Query: 1 MPGISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFL 60
M G S K I+IDGRGHLLGRLA+++AK +L GN+VVVVR E +NISGNFFRNKLK+++FL
Sbjct: 1 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFL 60
Query: 61 NKRCNVNPARGPFHYRAPARIFWKT 85
KRCNVNPARGPFH+RAP++I WKT
Sbjct: 61 RKRCNVNPARGPFHFRAPSKILWKT 85
>sp|Q4R8Z2|RL13A_MACFA 60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2
SV=3
Length = 203
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/158 (63%), Positives = 129/158 (81%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKLKYLAFL KR N NP
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+RGP+H+RAP+RIFW+TVRGM PHK RG AL RLKV++GIPP Y +++R+ VP AL+
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
V LKP R + +GR++HEVGWKY+ + LE KR+EK+
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKA 164
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 69/77 (89%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
+++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKLKYLAFL KR N NP
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 69 ARGPFHYRAPARIFWKT 85
+RGP+H+RAP+RIFW+T
Sbjct: 67 SRGPYHFRAPSRIFWRT 83
>sp|P40429|RL13A_HUMAN 60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2
Length = 203
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/158 (63%), Positives = 129/158 (81%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKLKYLAFL KR N NP
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+RGP+H+RAP+RIFW+TVRGM PHK RG AL RLKV++GIPP Y +++R+ VP AL+
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
V LKP R + +GR++HEVGWKY+ + LE KR+EK+
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKA 164
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 69/77 (89%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
+++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKLKYLAFL KR N NP
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 69 ARGPFHYRAPARIFWKT 85
+RGP+H+RAP+RIFW+T
Sbjct: 67 SRGPYHFRAPSRIFWRT 83
>sp|Q3SZ90|RL13A_BOVIN 60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3
Length = 203
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/158 (63%), Positives = 130/158 (82%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKLKYLAFL KR N NP
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+RGP+H+RAP+RIFW+TVRGM PHK RG AL+RLKV++GIPP Y +++R+ VP AL+
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
V LKP R + +GR++HEVGWKY+ + LE KR+EK+
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKA 164
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 69/77 (89%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
+++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKLKYLAFL KR N NP
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 69 ARGPFHYRAPARIFWKT 85
+RGP+H+RAP+RIFW+T
Sbjct: 67 SRGPYHFRAPSRIFWRT 83
>sp|Q5RA38|RL13A_PONAB 60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3
Length = 203
Score = 220 bits (561), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 129/158 (81%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKLKYLAFL KR N +P
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSP 66
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+RGP+H+RAP+RIFW+TVRGM PHK RG AL RLKV++GIPP Y +++R+ VP AL+
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
V LKP R + +GR++HEVGWKY+ + LE KR+EK+
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKA 164
Score = 124 bits (310), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 69/77 (89%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
+++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKLKYLAFL KR N +P
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSP 66
Query: 69 ARGPFHYRAPARIFWKT 85
+RGP+H+RAP+RIFW+T
Sbjct: 67 SRGPYHFRAPSRIFWRT 83
>sp|Q9VNE9|RL13A_DROME 60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A
PE=1 SV=1
Length = 205
Score = 220 bits (561), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 99/157 (63%), Positives = 128/157 (81%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
++IDGRGHLLGRLAS+VAK +L G +V VVR E LN+SG+F+RNK+K+LA+L KRCNVNP
Sbjct: 9 VVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNP 68
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
ARGPFH+RAP+RIF+K VRGM PHK RG AL RL+V++GIP Y +R+R+ VP A+R
Sbjct: 69 ARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRV 128
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREK 243
+ L+ R YC VGR+SHEVGW Y+ +++ LERKR+ K
Sbjct: 129 LTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAK 165
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 74/85 (87%)
Query: 1 MPGISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFL 60
M G++ + ++IDGRGHLLGRLAS+VAK +L G +V VVR E LN+SG+F+RNK+K+LA+L
Sbjct: 1 MTGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYL 60
Query: 61 NKRCNVNPARGPFHYRAPARIFWKT 85
KRCNVNPARGPFH+RAP+RIF+K
Sbjct: 61 RKRCNVNPARGPFHFRAPSRIFYKA 85
>sp|P19253|RL13A_MOUSE 60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4
Length = 203
Score = 220 bits (560), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 101/158 (63%), Positives = 129/158 (81%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKLKYLAFL KR N NP
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+RGP+H+RAP+RIFW+TVRGM PHK RG AL+RLKV +GIPP Y +++R+ VP AL+
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKV 126
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
V LKP R + +GR++HEVGWKY+ + LE KR+EK+
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKA 164
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 69/77 (89%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
+++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKLKYLAFL KR N NP
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 69 ARGPFHYRAPARIFWKT 85
+RGP+H+RAP+RIFW+T
Sbjct: 67 SRGPYHFRAPSRIFWRT 83
>sp|P35427|RL13A_RAT 60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2
Length = 203
Score = 218 bits (554), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 128/158 (81%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++DGR HLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKLKYLAFL KR N NP
Sbjct: 7 LVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+RGP+H+RAP+RIFW+TVRGM PHK RG AL+RLKV +GIPP Y +++R+ VP AL+
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKV 126
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
V LKP R + +GR++HEVGWKY+ + LE KR+EK+
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKA 164
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 68/77 (88%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
+++DGR HLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKLKYLAFL KR N NP
Sbjct: 7 LVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 69 ARGPFHYRAPARIFWKT 85
+RGP+H+RAP+RIFW+T
Sbjct: 67 SRGPYHFRAPSRIFWRT 83
>sp|Q9XSU0|RL13A_CANFA 60S ribosomal protein L13a OS=Canis familiaris GN=RPL13A PE=1 SV=2
Length = 203
Score = 217 bits (552), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 99/158 (62%), Positives = 127/158 (80%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKL YLAFL KR N NP
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNP 66
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+RGP+ +RAP+RIFW+TVRGM PHK RG AL RLKV++GIPP Y +++R+ VP AL+
Sbjct: 67 SRGPYDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
V LKP R + +GR++HEVGWKY+ + LE KR+EK+
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKA 164
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 67/77 (87%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
+++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKL YLAFL KR N NP
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNP 66
Query: 69 ARGPFHYRAPARIFWKT 85
+RGP+ +RAP+RIFW+T
Sbjct: 67 SRGPYDFRAPSRIFWRT 83
>sp|O42848|RL16A_SCHPO 60S ribosomal protein L16-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl16a PE=1 SV=1
Length = 197
Score = 214 bits (544), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 100/162 (61%), Positives = 125/162 (77%)
Query: 83 WKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRC 142
++ ++ID +GHLLGRLAS+VAK +L G +VVVVR E LNISG+FFRNKLKYLA+L K C
Sbjct: 4 FQKVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKAC 63
Query: 143 NVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPT 202
NP+RG FH+RAP+RIF K VRGM PHK RG AL+ L+ EGIPP + +++R+ VP
Sbjct: 64 RYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPA 123
Query: 203 ALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
ALR + LKPGR YC+VGR+S EVGWKY IV LE +R+ KS
Sbjct: 124 ALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKS 165
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 66/80 (82%)
Query: 6 RKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCN 65
+K ++ID +GHLLGRLAS+VAK +L G +VVVVR E LNISG+FFRNKLKYLA+L K C
Sbjct: 5 QKVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACR 64
Query: 66 VNPARGPFHYRAPARIFWKT 85
NP+RG FH+RAP+RIF K
Sbjct: 65 YNPSRGAFHFRAPSRIFQKA 84
>sp|Q9P720|RL16_NEUCR 60S ribosomal protein L16 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-16
PE=3 SV=1
Length = 202
Score = 213 bits (543), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 129/162 (79%), Gaps = 1/162 (0%)
Query: 83 WKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRC 142
+++ ++IDG+GHLLGRLASIVAK +LNG ++VVVR E LNISG FFR KLKY ++L K
Sbjct: 4 FESVVVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMT 63
Query: 143 NVNPARG-PFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVP 201
NP RG PFH+RAP+RIF+K VRGM PHK RGA AL+RLKV+EG+PP Y +++++ VP
Sbjct: 64 RYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVP 123
Query: 202 TALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREK 243
ALR + L+PGR +C+VGR+S EVGWKY+ +V LE +R+ K
Sbjct: 124 QALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAK 165
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 63/78 (80%), Gaps = 1/78 (1%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
++IDG+GHLLGRLASIVAK +LNG ++VVVR E LNISG FFR KLKY ++L K NP
Sbjct: 8 VVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNP 67
Query: 69 AR-GPFHYRAPARIFWKT 85
R GPFH+RAP+RIF+K
Sbjct: 68 TRGGPFHFRAPSRIFYKA 85
>sp|O42991|RL16B_SCHPO 60S ribosomal protein L16-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl16b PE=1 SV=1
Length = 197
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 100/162 (61%), Positives = 125/162 (77%)
Query: 83 WKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRC 142
++ ++ID +GHLLGRLAS+VAK +L G +VVVVR E LNISG+FFRNKLKYLA+L K C
Sbjct: 4 FQKVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKAC 63
Query: 143 NVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPT 202
NP+RG FH+RAP+RIF K VRGM PHK RG AL+ L+ EGIPP + +++R+ VP
Sbjct: 64 RYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPA 123
Query: 203 ALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
ALR + LKPGR YC+VGR+S EVGWKY IV LE +R+ KS
Sbjct: 124 ALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKS 165
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 66/80 (82%)
Query: 6 RKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCN 65
+K ++ID +GHLLGRLAS+VAK +L G +VVVVR E LNISG+FFRNKLKYLA+L K C
Sbjct: 5 QKVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACR 64
Query: 66 VNPARGPFHYRAPARIFWKT 85
NP+RG FH+RAP+RIF K
Sbjct: 65 YNPSRGAFHFRAPSRIFQKA 84
>sp|O43004|RL16C_SCHPO 60S ribosomal protein L16-C OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl16c PE=3 SV=1
Length = 197
Score = 211 bits (536), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 122/158 (77%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
++ID +GHL+GRLAS VAK +L G +VVVVR E LNISG+FFRNKLKYLA+L K C NP
Sbjct: 8 VIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNP 67
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+RG FH+RAP+RIF K VRGM PHK RG ALK L+ EGIPP + +++RL VP ALR
Sbjct: 68 SRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRV 127
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
+ LKP R YC++GR+S EVGWKYK IV LE +R+ KS
Sbjct: 128 LRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165
Score = 114 bits (285), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 65/80 (81%)
Query: 6 RKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCN 65
+K ++ID +GHL+GRLAS VAK +L G +VVVVR E LNISG+FFRNKLKYLA+L K C
Sbjct: 5 QKLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACR 64
Query: 66 VNPARGPFHYRAPARIFWKT 85
NP+RG FH+RAP+RIF K
Sbjct: 65 YNPSRGAFHFRAPSRIFTKA 84
>sp|P26784|RL16A_YEAST 60S ribosomal protein L16-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL16A PE=1 SV=3
Length = 199
Score = 209 bits (533), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/160 (60%), Positives = 123/160 (76%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
++IDG+GHL+GRLAS+VAK +LNG ++VVVRAE LNISG FFRNKLKY FL K N
Sbjct: 7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 66
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
RGPFH+RAP+RIF+K +RGM HK RG AL+RLKV+EGIPP Y +++R+ VP ALR
Sbjct: 67 TRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRV 126
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIE 246
+ LKPGR Y ++G++S VGWKY+ +V LE KR+ S E
Sbjct: 127 LRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAE 166
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 63/77 (81%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
++IDG+GHL+GRLAS+VAK +LNG ++VVVRAE LNISG FFRNKLKY FL K N
Sbjct: 7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 66
Query: 69 ARGPFHYRAPARIFWKT 85
RGPFH+RAP+RIF+K
Sbjct: 67 TRGPFHFRAPSRIFYKA 83
>sp|P93099|RL13A_CYAPA 60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1
Length = 200
Score = 208 bits (529), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/158 (59%), Positives = 123/158 (77%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++D RGHLLGRLA+ +AK +LNG RVV VR E +NISG+ FRNKLK+ AFL KR N NP
Sbjct: 6 VVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNP 65
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
RGPFH+R+PARI W+T+RGM PHK RGA AL+RLK +EG+PP Y + +R+ +P ALR
Sbjct: 66 RRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRV 125
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
+ LKPGR +C +GR++ EVGW++ +V LE KR+ KS
Sbjct: 126 LRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKS 163
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 64/79 (81%)
Query: 7 KPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNV 66
K +++D RGHLLGRLA+ +AK +LNG RVV VR E +NISG+ FRNKLK+ AFL KR N
Sbjct: 4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNT 63
Query: 67 NPARGPFHYRAPARIFWKT 85
NP RGPFH+R+PARI W+T
Sbjct: 64 NPRRGPFHFRSPARILWRT 82
>sp|Q91487|RL13A_SALTR 60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a
PE=2 SV=1
Length = 189
Score = 207 bits (528), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 96/150 (64%), Positives = 122/150 (81%)
Query: 95 LLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYR 154
LLGRLA+IVA +L G++VVVVR E +NISGNF+RNKLKYLAFL KR N NP+RGP+H+R
Sbjct: 1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFR 60
Query: 155 APARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRS 214
AP+RIFW+TVRGM PHK RG AL+RLKV++G+PP Y +R+R+ VP AL+ V LKP R
Sbjct: 61 APSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRK 120
Query: 215 YCSVGRISHEVGWKYKTIVRHLERKRREKS 244
+ +GR++HEVGWKY+ I LE KR+EK+
Sbjct: 121 FALLGRLAHEVGWKYQAITATLEEKRKEKA 150
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 61/69 (88%)
Query: 17 LLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYR 76
LLGRLA+IVA +L G++VVVVR E +NISGNF+RNKLKYLAFL KR N NP+RGP+H+R
Sbjct: 1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFR 60
Query: 77 APARIFWKT 85
AP+RIFW+T
Sbjct: 61 APSRIFWRT 69
>sp|Q27389|RL13A_CAEEL 60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2
SV=1
Length = 202
Score = 207 bits (527), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 125/157 (79%), Gaps = 1/157 (0%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
I+IDG+ HLLGRLASIVAK +L G++VVV+RAE + ISGNF R+KLKY++FL KRCN+NP
Sbjct: 8 IIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINP 67
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
ARG FHYRAP +IFW+TVRGM PHK +RG +ALK L+ YEG+P KY + + L P+A R
Sbjct: 68 ARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR- 126
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREK 243
L+P R +C VGR+SHEVGW+++ +V LE KR+ K
Sbjct: 127 FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVK 163
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 72/83 (86%)
Query: 3 GISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNK 62
G+S + I+IDG+ HLLGRLASIVAK +L G++VVV+RAE + ISGNF R+KLKY++FL K
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 63 RCNVNPARGPFHYRAPARIFWKT 85
RCN+NPARG FHYRAP +IFW+T
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRT 84
>sp|P26785|RL16B_YEAST 60S ribosomal protein L16-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL16B PE=1 SV=3
Length = 198
Score = 203 bits (516), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 93/160 (58%), Positives = 120/160 (75%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
++ID + HLLGRLAS +AK +LNG ++VVVRAE LNISG FFRNKLKY FL K N
Sbjct: 6 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNK 65
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
RGPFH+RAP+RI +K +RGM HK RG AL+RLK++EGIPP Y +++R+ VP ALR
Sbjct: 66 TRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRV 125
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIE 246
+ LKPGR Y ++G++S VGWKY+ +V LE KR+ +S E
Sbjct: 126 LRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAE 165
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 62/82 (75%)
Query: 4 ISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKR 63
+S+ ++ID + HLLGRLAS +AK +LNG ++VVVRAE LNISG FFRNKLKY FL K
Sbjct: 1 MSQPVVVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKA 60
Query: 64 CNVNPARGPFHYRAPARIFWKT 85
N RGPFH+RAP+RI +K
Sbjct: 61 TAFNKTRGPFHFRAPSRILYKA 82
>sp|Q9SVR0|R13A3_ARATH 60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC
PE=2 SV=1
Length = 206
Score = 190 bits (482), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 115/158 (72%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++DGR H+LGRLAS AK +LNG VVVVR E + +SG R K+KY+ FL KR N P
Sbjct: 12 VVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKP 71
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+ GP H+RAP++IFW+TVRGM PHK RGA AL RLKV+EGIPP Y + +R+ +P AL+
Sbjct: 72 SHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKV 131
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
+ L+ G YC +GR+S EVGW + ++ LE KR+E+S
Sbjct: 132 LRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERS 169
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 60/83 (72%)
Query: 3 GISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNK 62
GI K +++DGR H+LGRLAS AK +LNG VVVVR E + +SG R K+KY+ FL K
Sbjct: 6 GICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRK 65
Query: 63 RCNVNPARGPFHYRAPARIFWKT 85
R N P+ GP H+RAP++IFW+T
Sbjct: 66 RMNTKPSHGPIHFRAPSKIFWRT 88
>sp|O49885|RL13A_LUPLU 60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1
Length = 205
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/158 (55%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++D R H+LGRLASIVAK +LNG +VV+VR+E + ISG R K+KYL FL KR N P
Sbjct: 12 VVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKP 71
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+ GP H AP++IFW+TVRGM PHK RG AL RLKVYEGIPP + +++RL VP AL+
Sbjct: 72 SHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKV 130
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
+ L+ G YC +G++S EVGW Y ++ LE+KR+E+S
Sbjct: 131 LRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERS 168
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
Query: 3 GISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNK 62
GI+ K +++D R H+LGRLASIVAK +LNG +VV+VR+E + ISG R K+KYL FL K
Sbjct: 6 GIAAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRK 65
Query: 63 RCNVNPARGPFHYRAPARIFWKT 85
R N P+ GP H AP++IFW+T
Sbjct: 66 RMNTKPSHGPIHC-APSKIFWRT 87
>sp|Q9LRX8|R13A2_ARATH 60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB
PE=1 SV=1
Length = 206
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 115/158 (72%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++D R H+ GRLASI+AK +LNG VVVVR E + +SG R K+KY+ FL KR N P
Sbjct: 12 VVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKP 71
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+ GP H+RAP++IFW+TVRGM PHK RGA AL RLKV+EG+PP Y + +R+ +P AL+
Sbjct: 72 SHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKV 131
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
+ L+ G YC +GR+S EVGW + ++ LE KR+E+S
Sbjct: 132 LRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERS 169
Score = 104 bits (259), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 60/83 (72%)
Query: 3 GISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNK 62
GI K +++D R H+ GRLASI+AK +LNG VVVVR E + +SG R K+KY+ FL K
Sbjct: 6 GICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRK 65
Query: 63 RCNVNPARGPFHYRAPARIFWKT 85
R N P+ GP H+RAP++IFW+T
Sbjct: 66 RMNTKPSHGPIHFRAPSKIFWRT 88
>sp|Q9FKC0|R13A4_ARATH 60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD
PE=2 SV=1
Length = 206
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 118/169 (69%), Gaps = 6/169 (3%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++D R H+LGRLASI AK +LNG +VV+VR E + +SG R K+KY+ FL KR N P
Sbjct: 12 VVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKP 71
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+ GP H+RAP++IFW+TVRGM PHK RGA AL RLKVYEG+P Y + +R+ +P AL+
Sbjct: 72 SHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKV 131
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKIKLHTVYN 255
+ L+ G YC +GR+S EVGW + ++ LE KR+E++ H VY
Sbjct: 132 LRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERA------HVVYE 174
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 61/83 (73%)
Query: 3 GISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNK 62
GI K +++D R H+LGRLASI AK +LNG +VV+VR E + +SG R K+KY+ FL K
Sbjct: 6 GICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRK 65
Query: 63 RCNVNPARGPFHYRAPARIFWKT 85
R N P+ GP H+RAP++IFW+T
Sbjct: 66 RMNTKPSHGPIHFRAPSKIFWRT 88
>sp|O65055|RL13A_PICMA 60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1
Length = 206
Score = 187 bits (475), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 114/158 (72%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++D R H+LGRLASI+AK +L+G RVVVVR E + +SG R K+KYL FL KR N P
Sbjct: 12 VVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 71
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+ GP H+RAP+RI W+T+RGM PHK RGA AL L+ +EG+PP Y R++R+ +P AL+
Sbjct: 72 SHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKV 131
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
+ L+PG YC +GR+S EVGW + + LE KR+ K+
Sbjct: 132 LRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKA 169
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 61/83 (73%)
Query: 3 GISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNK 62
GI K +++D R H+LGRLASI+AK +L+G RVVVVR E + +SG R K+KYL FL K
Sbjct: 6 GICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRK 65
Query: 63 RCNVNPARGPFHYRAPARIFWKT 85
R N P+ GP H+RAP+RI W+T
Sbjct: 66 RMNTKPSHGPIHFRAPSRILWRT 88
>sp|Q9SFU1|R13A1_ARATH 60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA
PE=2 SV=1
Length = 206
Score = 187 bits (474), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 115/158 (72%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++D R H+LGRLAS+VAK +LNG +VVVR E + +SG R K+KY+ FL KR N P
Sbjct: 12 VVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKP 71
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+ GP H+RAP++IFW+TVRGM PHK RGA AL RLKV+EG+P Y + +R+ VP AL+
Sbjct: 72 SHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKV 131
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
+ L+ G YC +GR+S EVGW + ++ LE KR+E++
Sbjct: 132 LRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERA 169
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 61/83 (73%)
Query: 3 GISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNK 62
GI K +++D R H+LGRLAS+VAK +LNG +VVVR E + +SG R K+KY+ FL K
Sbjct: 6 GICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRK 65
Query: 63 RCNVNPARGPFHYRAPARIFWKT 85
R N P+ GP H+RAP++IFW+T
Sbjct: 66 RMNTKPSHGPIHFRAPSKIFWRT 88
>sp|Q553M7|RL13A_DICDI 60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a
PE=1 SV=1
Length = 187
Score = 185 bits (469), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 89/164 (54%), Positives = 118/164 (71%)
Query: 81 IFWKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNK 140
+F K I+IDG+GHLLGRLAS+VAK++L+G ++VVVR E LNISG RNKLK+ FLN
Sbjct: 1 MFQKKAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNL 60
Query: 141 RCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCV 200
N N ARG H R+P++IFW+ VRGM PHK RG AL +KV+EG+P Y + +R+ V
Sbjct: 61 TMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVV 120
Query: 201 PTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
P+ALR V L R Y + R+S EVGWKY+ +V LE +R+++S
Sbjct: 121 PSALRVVKLNTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRS 164
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 62/82 (75%)
Query: 4 ISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKR 63
+K I+IDG+GHLLGRLAS+VAK++L+G ++VVVR E LNISG RNKLK+ FLN
Sbjct: 2 FQKKAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLT 61
Query: 64 CNVNPARGPFHYRAPARIFWKT 85
N N ARG H R+P++IFW+
Sbjct: 62 MNTNHARGHRHGRSPSKIFWRA 83
>sp|Q95307|RL13A_PIG 60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2
SV=2
Length = 137
Score = 181 bits (459), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/135 (63%), Positives = 109/135 (80%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKLKYLAFL KR N NP
Sbjct: 3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 62
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+RGP+H+RAP+RIFW+TVRGM PHK RG AL RLKV++GIPP Y +++R+ VP AL+
Sbjct: 63 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 122
Query: 207 VCLKPGRSYCSVGRI 221
V LK + +GR+
Sbjct: 123 VRLKLTGKFXYLGRL 137
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 69/77 (89%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
+++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKLKYLAFL KR N NP
Sbjct: 3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 62
Query: 69 ARGPFHYRAPARIFWKT 85
+RGP+H+RAP+RIFW+T
Sbjct: 63 SRGPYHFRAPSRIFWRT 79
>sp|P0DJ15|RL13A_TETTS 60S ribosomal protein L13a OS=Tetrahymena thermophila (strain
SB210) GN=RPL13A PE=1 SV=1
Length = 198
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 113/158 (71%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
++ID +GHLLGRLAS VAK +L+G R+VVVR E +NISG+ FRN++K+ FLNK N NP
Sbjct: 6 VVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNP 65
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
RG H+RAP+RIFW+ VRGM PHK +GA AL+RLK++EGIP Y R ++ V AL+
Sbjct: 66 RRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKV 125
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
L+ R C +G +S VGW +T++ LE KRR ++
Sbjct: 126 QRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRRARA 163
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 62/79 (78%)
Query: 7 KPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNV 66
K ++ID +GHLLGRLAS VAK +L+G R+VVVR E +NISG+ FRN++K+ FLNK N
Sbjct: 4 KLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNH 63
Query: 67 NPARGPFHYRAPARIFWKT 85
NP RG H+RAP+RIFW+
Sbjct: 64 NPRRGVQHFRAPSRIFWRA 82
>sp|Q5JJF6|RL13_PYRKO 50S ribosomal protein L13P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl13p PE=3 SV=1
Length = 142
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
Query: 88 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 147
+I+ G +LGRLAS VAK +L G VV+V AE I+GN KY R NP
Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELRTRTNPR 62
Query: 148 RGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTV 207
RGPF+ + I +TVRGM P K DRG KA KRLKVY G+P ++ ++ + A +
Sbjct: 63 RGPFYPKRSDEIVRRTVRGMLPWKTDRGRKAFKRLKVYVGVPKEFEGKEFETISEAHMSR 122
Query: 208 CLKPGRSYCSVGRISHEVGWKY 229
P Y +VG ++ +G K+
Sbjct: 123 LATP--KYVTVGEVAKFLGGKF 142
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 41/76 (53%)
Query: 10 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 69
+I+ G +LGRLAS VAK +L G VV+V AE I+GN KY R NP
Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELRTRTNPR 62
Query: 70 RGPFHYRAPARIFWKT 85
RGPF+ + I +T
Sbjct: 63 RGPFYPKRSDEIVRRT 78
>sp|Q9V196|RL13_PYRAB 50S ribosomal protein L13P OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl13p PE=3 SV=1
Length = 142
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
Query: 88 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 147
+I+ G +LGRLAS VAK +L G VV+V AE I+GN KY R NP
Sbjct: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
Query: 148 RGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTV 207
RGPF+ + I +T+RGM P K DRG KA KRLKVY GIP ++ +Q + A +
Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAHVSR 122
Query: 208 CLKPGRSYCSVGRISHEVGWKY 229
+P Y +VG ++ +G K+
Sbjct: 123 LSRP--KYVTVGEVAKFLGGKF 142
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 41/76 (53%)
Query: 10 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 69
+I+ G +LGRLAS VAK +L G VV+V AE I+GN KY R NP
Sbjct: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
Query: 70 RGPFHYRAPARIFWKT 85
RGPF+ + I +T
Sbjct: 63 RGPFYPKRSDEIVRRT 78
>sp|Q8U0E6|RL13_PYRFU 50S ribosomal protein L13P OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl13p PE=1 SV=1
Length = 142
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
Query: 88 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 147
+I+ G +LGRLAS VAK +L G VV+V AE I+GN KY R NP
Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLTNPR 62
Query: 148 RGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTV 207
RGPF+ + I +T+RGM P K DRG KA KRLKVY GIP ++ ++ + A +
Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEAHVSR 122
Query: 208 CLKPGRSYCSVGRISHEVGWKY 229
+P Y +VG ++ +G K+
Sbjct: 123 LSRP--KYVTVGEVAKFLGGKF 142
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 41/76 (53%)
Query: 10 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 69
+I+ G +LGRLAS VAK +L G VV+V AE I+GN KY R NP
Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLTNPR 62
Query: 70 RGPFHYRAPARIFWKT 85
RGPF+ + I +T
Sbjct: 63 RGPFYPKRSDEIVRRT 78
>sp|O59300|RL13_PYRHO 50S ribosomal protein L13P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl13p PE=1 SV=1
Length = 142
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
Query: 88 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 147
+I+ G +LGRLAS VAK +L G VV+V AE I+GN KY R NP
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
Query: 148 RGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTV 207
RGPF+ + I +T+RGM P K DRG KA +RLKVY GIP ++ +Q + A +
Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVSR 122
Query: 208 CLKPGRSYCSVGRISHEVGWKY 229
+P Y +VG ++ +G K+
Sbjct: 123 LSRP--KYVTVGEVAKFLGGKF 142
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 41/76 (53%)
Query: 10 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 69
+I+ G +LGRLAS VAK +L G VV+V AE I+GN KY R NP
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
Query: 70 RGPFHYRAPARIFWKT 85
RGPF+ + I +T
Sbjct: 63 RGPFYPKRSDEIVRRT 78
>sp|O26146|RLSX_METTH Fused L13/S9 ribosomal protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpl13p/rps9p PE=3 SV=1
Length = 282
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 84/141 (59%), Gaps = 5/141 (3%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
++I+G GH+LGRLAS+V+K +L G V+V+ AE + I+G+ KY +++ NP
Sbjct: 4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNP 63
Query: 147 AR-GPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALR 205
R GP + R P IF +TVRGM P+K +G +A K LK Y GIP ++ + + +P A +
Sbjct: 64 RRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA-K 122
Query: 206 TVCLKPGRSYCSVGRISHEVG 226
+K G +G IS +G
Sbjct: 123 AGSIKKG---MELGEISELLG 140
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
++I+G GH+LGRLAS+V+K +L G V+V+ AE + I+G+ KY +++ NP
Sbjct: 4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNP 63
Query: 69 AR-GPFHYRAPARIFWKT 85
R GP + R P IF +T
Sbjct: 64 RRMGPKYPRRPDDIFRRT 81
>sp|O29137|RL13_ARCFU 50S ribosomal protein L13P OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rpl13p PE=3 SV=1
Length = 156
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 82/144 (56%), Gaps = 10/144 (6%)
Query: 88 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFL---NKRCNV 144
+ID GH+LGRL+S +AK +LNG R+VVV AE I+G+ KY+ F K
Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD------KYMVFERYKEKYDRG 71
Query: 145 NPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTAL 204
+ +GP+ R P RIF +TVRGM P K RG A +RL+V+ G+P + R+ + AL
Sbjct: 72 SKEKGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL 131
Query: 205 RTVCLKPGRSYCSVGRISHEVGWK 228
K + Y ++ +S +G++
Sbjct: 132 LEKVSKTDK-YVTLAEVSRYLGFR 154
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 9/79 (11%)
Query: 10 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFL---NKRCNV 66
+ID GH+LGRL+S +AK +LNG R+VVV AE I+G+ KY+ F K
Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD------KYMVFERYKEKYDRG 71
Query: 67 NPARGPFHYRAPARIFWKT 85
+ +GP+ R P RIF +T
Sbjct: 72 SKEKGPYFPRHPERIFKRT 90
>sp|Q2FTN5|RL13_METHJ 50S ribosomal protein L13P OS=Methanospirillum hungatei (strain
JF-1 / DSM 864) GN=rpl13p PE=3 SV=1
Length = 140
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 80/143 (55%), Gaps = 5/143 (3%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
++IDG G LLGRLAS VAK L G + VV AE ISGN R Y KR +
Sbjct: 3 VVIDGDGLLLGRLASNVAKRALAGEEIAVVNAEKAVISGNRARVLGNYK---QKRQRGSR 59
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
GPF R P I +T+RGM P+K +RG +A+KR+++Y G+P + + + + A +
Sbjct: 60 EGGPFFPRRPDHILKRTIRGMIPYKRERGIEAMKRIRIYVGVPDELSGQPFETIEDASKK 119
Query: 207 VCLKPGRSYCSVGRISHEVGWKY 229
P S+ ++G +S +G KY
Sbjct: 120 RLGNP--SHVTLGAVSTFLGAKY 140
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
++IDG G LLGRLAS VAK L G + VV AE ISGN R Y KR +
Sbjct: 3 VVIDGDGLLLGRLASNVAKRALAGEEIAVVNAEKAVISGNRARVLGNY---KQKRQRGSR 59
Query: 69 ARGPFHYRAPARIFWKT 85
GPF R P I +T
Sbjct: 60 EGGPFFPRRPDHILKRT 76
>sp|Q12TI6|RL13_METBU 50S ribosomal protein L13P OS=Methanococcoides burtonii (strain DSM
6242) GN=rpl13p PE=3 SV=1
Length = 139
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 88 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 147
+ID G ++GRLAS VAK +L+G V +V AE ISG+ +Y N
Sbjct: 3 VIDANGLIMGRLASNVAKMLLSGEEVSIVNAERAVISGSKVTTFEEYDVIRNMGTR---E 59
Query: 148 RGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTV 207
GP+ R P RI +TVRGM P+K RG A+ RLKVY GIP +Y + + V A T
Sbjct: 60 FGPYFPRRPDRILKRTVRGMLPYKRARGKDAMGRLKVYVGIPYEYQDAEFVSVEGAEMTR 119
Query: 208 CLKPGRSYCSVGRISHEVGWKY 229
Y ++G +S ++G K+
Sbjct: 120 L--SSNKYVTIGDVSRQLGSKF 139
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 10 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 69
+ID G ++GRLAS VAK +L+G V +V AE ISG+ +Y N
Sbjct: 3 VIDANGLIMGRLASNVAKMLLSGEEVSIVNAERAVISGSKVTTFEEYDVIRNMGTR---E 59
Query: 70 RGPFHYRAPARIFWKT 85
GP+ R P RI +T
Sbjct: 60 FGPYFPRRPDRILKRT 75
>sp|Q8TVB6|RL13_METKA 50S ribosomal protein L13P OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl13p PE=3 SV=1
Length = 159
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
Query: 88 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 147
+ID +LGRLAS+VAK IL G R+ V+ E I+G +N +K +L K +P
Sbjct: 17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITGK--KNTIKE-EWLQKIQRGDPK 73
Query: 148 RGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTV 207
+GPF+ R P IF + VRGM P K RG +A KRL+ Y G P++ +
Sbjct: 74 KGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGT-PRWVEEANIEPERVAEAD 132
Query: 208 CLKPGR-SYCSVGRISHEVGWK 228
+ G Y ++G +S E+G++
Sbjct: 133 MSRLGHLWYVTLGELSEELGYQ 154
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 10 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 69
+ID +LGRLAS+VAK IL G R+ V+ E I+G +N +K +L K +P
Sbjct: 17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITGK--KNTIKE-EWLQKIQRGDPK 73
Query: 70 RGPFHYRAPARIF 82
+GPF+ R P IF
Sbjct: 74 KGPFYPRRPDLIF 86
>sp|Q8TT43|RL13_METAC 50S ribosomal protein L13P OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpl13p PE=3
SV=1
Length = 143
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Query: 88 LIDGRGHLLGRLASIVAKTILNGN-RVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+ID +G +LGRLAS VAK +L+G+ +V ++ AE ISG+ +Y R
Sbjct: 6 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREYR---ETRERGAT 62
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
GP+ + P RI +T+RGM P+K RG A+ RLKVY G+P + + + +P A
Sbjct: 63 EFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA--D 120
Query: 207 VCLKPGRSYCSVGRISHEVGWKY 229
+ L Y +G +S ++G K+
Sbjct: 121 MRLLSSSRYVELGEVSQKMGSKF 143
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 7 KPILIDGRGHLLGRLASIVAKTILNGN-RVVVVRAELLNISGNFFRNKLKYLAFLNKRCN 65
K +ID +G +LGRLAS VAK +L+G+ +V ++ AE ISG+ +Y R
Sbjct: 3 KMTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY---RETRER 59
Query: 66 VNPARGPFHYRAPARIFWKT 85
GP+ + P RI +T
Sbjct: 60 GATEFGPYFPKRPDRILKRT 79
>sp|Q46CK6|RL13_METBF 50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro
/ DSM 804) GN=rpl13p PE=3 SV=1
Length = 140
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 77/143 (53%), Gaps = 6/143 (4%)
Query: 88 LIDGRGHLLGRLASIVAKTILNGNR-VVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+ID G +LGRLAS VAK +L+G+ + +V AE ISG+ +Y R +
Sbjct: 3 VIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRATTLKEYR---ETRERGST 59
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
GP+ + P RI +T+RGM P+K RG A+ RLKVY G+P + + + + A
Sbjct: 60 EFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA--D 117
Query: 207 VCLKPGRSYCSVGRISHEVGWKY 229
+ L Y +G +S ++G K+
Sbjct: 118 MRLLSSSKYIELGEVSQKMGSKF 140
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 10 LIDGRGHLLGRLASIVAKTILNGN-RVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
+ID G +LGRLAS VAK +L+G+ + +V AE ISG+ +Y R +
Sbjct: 3 VIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRATTLKEY---RETRERGST 59
Query: 69 ARGPFHYRAPARIFWKT 85
GP+ + P RI +T
Sbjct: 60 EFGPYFPKRPDRILKRT 76
>sp|Q3IQT4|RL13_NATPD 50S ribosomal protein L13P OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rpl13p PE=3 SV=1
Length = 144
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 10/144 (6%)
Query: 83 WKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRC 142
+ ++ID R +LGR+AS VA+ L+G R+ VV AE I+G+ + + KR
Sbjct: 6 FDADVVIDARDCILGRVASQVAERALDGERIAVVNAEQAVITGS----EDDIMEVYRKRD 61
Query: 143 NVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPT 202
V RGP + + P RIF ++VRGM P+K RG +A + +++Y G P Y + L +
Sbjct: 62 EVGSDRGPRYPKRPDRIFKRSVRGMLPYKTTRGREAFENVRIYMGNP--YEEAEVLEDTS 119
Query: 203 ALRTVCLKPGRSYCSVGRISHEVG 226
R +K + S+G +S +G
Sbjct: 120 LDRLSNIK----FVSLGEVSENLG 139
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
++ID R +LGR+AS VA+ L+G R+ VV AE I+G ++ + KR V
Sbjct: 10 VVIDARDCILGRVASQVAERALDGERIAVVNAEQAVITG----SEDDIMEVYRKRDEVGS 65
Query: 69 ARGPFHYRAPARIFWKT 85
RGP + + P RIF ++
Sbjct: 66 DRGPRYPKRPDRIFKRS 82
>sp|Q8ZYQ1|RL13_PYRAE 50S ribosomal protein L13P OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl13p PE=3 SV=1
Length = 187
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 82/147 (55%), Gaps = 19/147 (12%)
Query: 87 ILIDGRGHLLGRLASIVAKTILN--GNRVVVVRAELLNISGN------FFRNKLKYLAFL 138
+++D GH+ GRLA+ +AK +L R+VVV AE L I+G+ +F+ K+
Sbjct: 19 VIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGDEKMVIEWFKRKIS----- 73
Query: 139 NKRCNVNPAR-GPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQR 197
R + NP + GP R P R+F + VRGM P K + G ALKRL+VY IP + +R+R
Sbjct: 74 EWRTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSALKRLRVYMSIPIEIMQRKR 133
Query: 198 LC---VPTALRTVCLKPGRSYCSVGRI 221
L VP A + L+P Y ++ +
Sbjct: 134 LVLYEVPEA--KLRLRPLLQYTTLEEV 158
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 14/83 (16%)
Query: 9 ILIDGRGHLLGRLASIVAKTILN--GNRVVVVRAELLNISGN------FFRNKLKYLAFL 60
+++D GH+ GRLA+ +AK +L R+VVV AE L I+G+ +F+ K+
Sbjct: 19 VIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGDEKMVIEWFKRKIS----- 73
Query: 61 NKRCNVNPAR-GPFHYRAPARIF 82
R + NP + GP R P R+F
Sbjct: 74 EWRTHYNPEKAGPKVPRRPDRVF 96
>sp|B1YC32|RL13_PYRNV 50S ribosomal protein L13P OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=rpl13p PE=3 SV=1
Length = 182
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 24/170 (14%)
Query: 87 ILIDGRGHLLGRLASIVAKTILN--GNRVVVVRAELLNISGN------FFRNKLKYLAFL 138
++I+ GH+ GRLA+ +AK +L G R+VVV AE L ++G+ +F+ K+
Sbjct: 17 VVINAEGHIAGRLATYIAKALLEKPGLRIVVVNAEKLVVTGDEKMVVEWFKRKISEWG-- 74
Query: 139 NKRCNVNPAR-GPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQR 197
+ NP + GP R P R+F + VRGM P + + G +ALKRL+VY +P + R+R
Sbjct: 75 ---THYNPEKAGPKIPRRPDRVFKRMVRGMLPKRAESGRRALKRLRVYVSVPMELLSRKR 131
Query: 198 LCV----PTALRTVCLKPGRSYCSVGRISHEV---GWKYKTIVRHLERKR 240
L V P LR ++P Y ++ + +V W+ + L +KR
Sbjct: 132 LVVYEVPPAKLR---MRPLAKYVTLEEVWRQVDPAAWEQWKKAQELWQKR 178
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 5 SRKPILIDGRGHLLGRLASIVAKTILN--GNRVVVVRAELLNISGN------FFRNKLKY 56
R ++I+ GH+ GRLA+ +AK +L G R+VVV AE L ++G+ +F+ K+
Sbjct: 13 ERGEVVINAEGHIAGRLATYIAKALLEKPGLRIVVVNAEKLVVTGDEKMVVEWFKRKISE 72
Query: 57 LAFLNKRCNVNPAR-GPFHYRAPARIF 82
+ NP + GP R P R+F
Sbjct: 73 WG-----THYNPEKAGPKIPRRPDRVF 94
>sp|Q8PW45|RL13_METMA 50S ribosomal protein L13P OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rpl13p PE=3 SV=2
Length = 140
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 77/143 (53%), Gaps = 6/143 (4%)
Query: 88 LIDGRGHLLGRLASIVAKTILNGN-RVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+ID +G +LGRLAS VAK +L+G+ +V ++ AE ISG+ +Y ++
Sbjct: 3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREYRETRDRGAT--- 59
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
GP+ + P RI +T+RGM P+K RG A+ RLKVY G+P Y + A
Sbjct: 60 EFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVP--YELKGAETTTIADAD 117
Query: 207 VCLKPGRSYCSVGRISHEVGWKY 229
+ L Y +G +S ++G K+
Sbjct: 118 MRLLSSNKYVELGEVSQKMGSKF 140
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 10 LIDGRGHLLGRLASIVAKTILNGN-RVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
+ID +G +LGRLAS VAK +L+G+ +V ++ AE ISG+ +Y ++
Sbjct: 3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREYRETRDRGAT--- 59
Query: 69 ARGPFHYRAPARIFWKT 85
GP+ + P RI +T
Sbjct: 60 EFGPYFPKRPDRILKRT 76
>sp|Q6NVV1|R13AX_HUMAN Putative 60S ribosomal protein L13a-like MGC87657 OS=Homo sapiens
PE=5 SV=1
Length = 102
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 52/78 (66%)
Query: 167 MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 226
M HK RG +L LKV++GIPP Y +++R+ VP AL+ V LKP R + +GR + EV
Sbjct: 1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVR 60
Query: 227 WKYKTIVRHLERKRREKS 244
WKY+ + LE KR+EK+
Sbjct: 61 WKYQAVTATLEEKRKEKA 78
>sp|A1RSE1|RL13_PYRIL 50S ribosomal protein L13P OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rpl13p PE=3 SV=1
Length = 185
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 15/145 (10%)
Query: 87 ILIDGRGHLLGRLASIVAKTILN--GNRVVVVRAELLNISGN------FFRNKLKYLAFL 138
I+ID GH+ GRLA+ VAK +L R+VVV AE L I+G+ +F+ K+
Sbjct: 17 IIIDADGHIAGRLATYVAKALLERPSLRIVVVNAEKLVITGDRKMVIEWFKRKISEW--- 73
Query: 139 NKRCNVNPAR-GPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQR 197
R + NP + GP R P R+F + VRGM P K RG ALKRL+VY IP + R++
Sbjct: 74 --RTHYNPEKAGPKIPRRPDRVFKRIVRGMLPKKNMRGRSALKRLRVYMSIPLEMLNRKK 131
Query: 198 LCV-PTALRTVCLKPGRSYCSVGRI 221
L + L + +KP + ++ +
Sbjct: 132 LVLYEVPLAKLKVKPLAKFVTLEEV 156
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 5 SRKPILIDGRGHLLGRLASIVAKTILN--GNRVVVVRAELLNISGN------FFRNKLKY 56
R I+ID GH+ GRLA+ VAK +L R+VVV AE L I+G+ +F+ K+
Sbjct: 13 ERGEIIIDADGHIAGRLATYVAKALLERPSLRIVVVNAEKLVITGDRKMVIEWFKRKISE 72
Query: 57 LAFLNKRCNVNPAR-GPFHYRAPARIF 82
R + NP + GP R P R+F
Sbjct: 73 W-----RTHYNPEKAGPKIPRRPDRVF 94
>sp|Q2NFZ8|RL13_METST 50S ribosomal protein L13P OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rpl13p PE=3 SV=1
Length = 142
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 5/143 (3%)
Query: 88 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 147
+IDG G +LGRLAS V+K +L+G + ++ AE + ISGN KY +++ NP
Sbjct: 4 IIDGEGLVLGRLASTVSKRLLDGEEITIINAEKIIISGNKDFIYAKYKQRVDRASISNPR 63
Query: 148 R-GPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
GP + R P IF +TVRGM P++ G A K LKV GIP + ++ + V A
Sbjct: 64 DLGPKYPRRPDDIFRRTVRGMIPYRKAHGRAAYKNLKVNVGIPKELEGQEVVEVEQAQPK 123
Query: 207 VCLKPGRSYCSVGRISHEVGWKY 229
K +G +S +G K+
Sbjct: 124 NITKS----MELGTVSKLLGAKF 142
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 10 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 69
+IDG G +LGRLAS V+K +L+G + ++ AE + ISGN KY +++ NP
Sbjct: 4 IIDGEGLVLGRLASTVSKRLLDGEEITIINAEKIIISGNKDFIYAKYKQRVDRASISNPR 63
Query: 70 R-GPFHYRAPARIFWKT 85
GP + R P IF +T
Sbjct: 64 DLGPKYPRRPDDIFRRT 80
>sp|P54023|RL13_METJA 50S ribosomal protein L13P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl13p PE=3 SV=2
Length = 137
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
Query: 88 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 147
+ID G +LGRLAS VAK +L G +V+V AE++ I+GN Y K+ NP
Sbjct: 3 VIDAEGAILGRLASEVAKRVLRGEEIVIVNAEMVVITGNKDWIIKTYQEEREKKNVANPR 62
Query: 148 R-GPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
R GP R P I +T+R M P+K +G +A KR+KVY G P +++ L T
Sbjct: 63 RFGPKFPRRPDDILRRTIRKMLPYKKPKGREAFKRVKVYVGNPKNLTVDEKIS--HKLNT 120
Query: 207 VCLKPGRSYCSVGRISHEVGWKY 229
Y ++ +S +G K+
Sbjct: 121 T------KYITLAELSKHLGAKF 137
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 10 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 69
+ID G +LGRLAS VAK +L G +V+V AE++ I+GN Y K+ NP
Sbjct: 3 VIDAEGAILGRLASEVAKRVLRGEEIVIVNAEMVVITGNKDWIIKTYQEEREKKNVANPR 62
Query: 70 R-GPFHYRAPARIFWKT 85
R GP R P I +T
Sbjct: 63 RFGPKFPRRPDDILRRT 79
>sp|Q9HQJ3|RL13_HALSA 50S ribosomal protein L13P OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rpl13p PE=3 SV=1
Length = 145
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 83 WKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRC 142
+ +++D R ++GR+AS VA+ L G+RV VV AE I+G + + R
Sbjct: 6 FDADVVVDARDCIMGRVASNVAERALAGDRVAVVNAEQAVITGT----EDDVFSTYRTRA 61
Query: 143 NVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIP 189
N+ RGP++ + P IF + +RGM P+K D G +AL ++VY G P
Sbjct: 62 NLGSDRGPYYPKRPDGIFKRAIRGMLPYKQDDGREALDSVRVYVGNP 108
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
+++D R ++GR+AS VA+ L G+RV VV AE I+G + + R N+
Sbjct: 10 VVVDARDCIMGRVASNVAERALAGDRVAVVNAEQAVITG----TEDDVFSTYRTRANLGS 65
Query: 69 ARGPFHYRAPARIF 82
RGP++ + P IF
Sbjct: 66 DRGPYYPKRPDGIF 79
>sp|P95991|RL13_SULSO 50S ribosomal protein L13P OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl13p PE=3 SV=1
Length = 149
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
++I+ G +LGR+AS V + + G +V++V E ISG R Y L + NP
Sbjct: 10 VIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLFNP 69
Query: 147 AR-GPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALR 205
R G R+P I +T+RGM P K +G + LK +K+Y G+P ++ RQ + P +
Sbjct: 70 YRNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQFIKFPDS-- 126
Query: 206 TVCLKPGRSYCSVGRISHEVGW 227
V G+ Y +V +S E+GW
Sbjct: 127 DVSRLKGK-YVTVEVVSKELGW 147
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 4 ISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKR 63
+ + ++I+ G +LGR+AS V + + G +V++V E ISG R Y L +
Sbjct: 5 VQEQVVIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVK 64
Query: 64 CNVNPAR-GPFHYRAPARIFWKT 85
NP R G R+P I +T
Sbjct: 65 TLFNPYRNGIRRPRSPINIVKRT 87
>sp|P29198|RL13_HALMA 50S ribosomal protein L13P OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpl13p PE=1
SV=1
Length = 145
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 11/145 (7%)
Query: 83 WKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRC 142
+ +++D R ++GR+AS VA+ L+G V VV AE I+G + KY KR
Sbjct: 6 FDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKY----EKRV 61
Query: 143 NVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPT 202
++ G F+ + P IF +T+RGM PHK RG +A + ++VY G P Y + T
Sbjct: 62 DIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNP--YDEDGEVLDGT 119
Query: 203 AL-RTVCLKPGRSYCSVGRISHEVG 226
+L R +K + ++G IS +G
Sbjct: 120 SLDRLSNIK----FVTLGEISETLG 140
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 8 PILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVN 67
+++D R ++GR+AS VA+ L+G V VV AE I+G + KY KR ++
Sbjct: 9 DVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKY----EKRVDIG 64
Query: 68 PARGPFHYRAPARIFWKT 85
G F+ + P IF +T
Sbjct: 65 NDNGYFYPKRPDGIFKRT 82
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,507,503
Number of Sequences: 539616
Number of extensions: 4037863
Number of successful extensions: 10450
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 415
Number of HSP's that attempted gapping in prelim test: 9760
Number of HSP's gapped (non-prelim): 991
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)