Query psy9430
Match_columns 255
No_of_seqs 305 out of 2109
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 19:11:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_K 60S ribosomal protein L 100.0 6.8E-66 2.3E-70 451.6 14.1 173 80-252 5-177 (206)
2 4a17_I RPL13A, 60S ribosomal p 100.0 2.3E-65 7.7E-70 446.2 15.1 170 83-252 2-171 (198)
3 4b6a_O 60S ribosomal protein L 100.0 3.1E-63 1.1E-67 432.8 15.8 169 83-251 3-171 (199)
4 2zkr_j 60S ribosomal protein L 100.0 7.6E-64 2.6E-68 438.0 7.9 171 82-252 2-172 (203)
5 3jyw_M 60S ribosomal protein L 100.0 2.7E-56 9.2E-61 383.7 7.5 152 87-238 1-152 (178)
6 1j3a_A 50S ribosomal protein L 100.0 3.4E-55 1.2E-59 365.2 11.2 142 86-229 1-142 (142)
7 1vq8_J 50S ribosomal protein L 100.0 2.6E-52 8.8E-57 348.7 11.3 140 81-229 4-143 (145)
8 3r8s_J 50S ribosomal protein L 100.0 2.9E-45 9.9E-50 305.0 7.8 122 72-199 1-139 (142)
9 3v2d_N 50S ribosomal protein L 100.0 4.3E-45 1.5E-49 303.3 7.5 120 72-199 1-137 (140)
10 2ftc_H L13MT, MRP-L13, 39S rib 100.0 6.3E-44 2.2E-48 298.9 8.5 127 72-200 1-143 (148)
11 3f1f_N 50S ribosomal protein L 100.0 2.4E-44 8.1E-49 304.8 5.1 122 70-199 22-160 (163)
12 2zjr_G 50S ribosomal protein L 100.0 2.3E-43 7.7E-48 301.7 10.3 123 71-201 28-167 (174)
13 3bbo_L Ribosomal protein L13; 100.0 1.2E-42 4.2E-47 309.6 3.9 139 69-209 90-248 (250)
14 3iz5_K 60S ribosomal protein L 99.9 2.7E-28 9.4E-33 213.6 5.4 85 2-86 5-89 (206)
15 4a17_I RPL13A, 60S ribosomal p 99.9 4.6E-27 1.6E-31 204.9 5.3 100 4-108 1-102 (198)
16 2zkr_j 60S ribosomal protein L 99.9 5.7E-27 1.9E-31 205.0 1.6 101 3-108 1-103 (203)
17 1j3a_A 50S ribosomal protein L 99.9 4.8E-26 1.7E-30 189.5 4.0 79 8-86 1-79 (142)
18 4b6a_O 60S ribosomal protein L 99.9 2.3E-25 7.7E-30 194.3 5.7 100 4-108 2-103 (199)
19 1vq8_J 50S ribosomal protein L 99.9 6.5E-25 2.2E-29 183.2 4.8 95 5-108 6-102 (145)
20 3jyw_M 60S ribosomal protein L 99.9 3.5E-25 1.2E-29 190.3 0.6 95 9-108 1-97 (178)
21 2ftc_H L13MT, MRP-L13, 39S rib 99.9 4E-24 1.4E-28 178.9 1.3 79 4-87 14-109 (148)
22 3r8s_J 50S ribosomal protein L 99.9 2.5E-24 8.7E-29 179.0 -0.9 81 3-85 10-104 (142)
23 2zjr_G 50S ribosomal protein L 99.9 4.5E-23 1.5E-27 176.3 0.1 77 4-85 37-130 (174)
24 3f1f_N 50S ribosomal protein L 99.8 3.2E-23 1.1E-27 175.5 -4.1 79 3-86 31-126 (163)
25 3v2d_N 50S ribosomal protein L 99.8 9.5E-22 3.2E-26 163.2 4.7 78 4-86 9-103 (140)
26 3bbo_L Ribosomal protein L13; 99.8 4.4E-22 1.5E-26 177.5 -2.0 77 4-86 110-204 (250)
27 1wi9_A Protein C20ORF116 homol 64.8 5.6 0.00019 29.1 3.3 29 212-240 18-46 (72)
28 2id1_A Hypothetical protein; a 56.6 33 0.0011 27.4 6.9 68 20-91 5-82 (130)
29 3koj_A Uncharacterized protein 54.5 6.5 0.00022 30.4 2.3 31 83-117 51-81 (108)
30 2o5a_A BH1328 protein; BHR21, 49.3 40 0.0014 26.7 6.2 68 20-91 5-82 (125)
31 3i1j_A Oxidoreductase, short c 44.2 39 0.0013 27.7 5.7 44 71-117 1-45 (247)
32 4dam_A Single-stranded DNA-bin 40.4 16 0.00054 28.9 2.5 29 85-117 63-91 (128)
33 3i71_A Ethanolamine utilizatio 40.3 19 0.00065 25.5 2.6 28 211-238 14-41 (68)
34 3koj_A Uncharacterized protein 39.5 16 0.00054 28.2 2.3 23 17-39 59-81 (108)
35 3vdy_A SSB, single-stranded DN 37.8 17 0.00058 27.7 2.3 30 84-117 49-78 (116)
36 3ulp_A Single-strand binding p 34.7 21 0.00072 27.5 2.4 30 84-117 53-83 (124)
37 1nd9_A Translation initiation 34.1 32 0.0011 21.5 2.9 24 216-239 3-26 (49)
38 2vw9_A Single-stranded DNA bin 34.0 23 0.00078 27.9 2.5 22 96-117 56-77 (134)
39 1z9f_A Single-strand binding p 33.9 22 0.00076 28.8 2.5 30 84-117 62-91 (153)
40 2g1u_A Hypothetical protein TM 31.6 60 0.0021 24.9 4.7 38 76-118 12-50 (155)
41 3afp_A Single-stranded DNA-bin 31.2 26 0.00089 28.8 2.5 29 85-117 53-81 (168)
42 2b1y_A Hypothetical protein AT 30.8 20 0.00068 27.9 1.6 61 29-94 16-80 (104)
43 1qvc_A Single stranded DNA bin 30.6 27 0.00093 27.8 2.5 30 84-117 52-81 (145)
44 3fwz_A Inner membrane protein 30.4 71 0.0024 24.1 4.8 37 78-119 2-39 (140)
45 1eqq_A Single stranded DNA bin 30.1 25 0.00086 29.2 2.3 29 84-116 53-81 (178)
46 3vdy_A SSB, single-stranded DN 29.5 30 0.001 26.2 2.5 23 17-39 56-78 (116)
47 4dam_A Single-stranded DNA-bin 29.5 30 0.001 27.2 2.5 24 17-40 69-92 (128)
48 3ull_A DNA binding protein; DN 28.7 30 0.001 27.0 2.4 30 84-117 66-96 (132)
49 3tqy_A Single-stranded DNA-bin 28.6 30 0.001 28.1 2.5 22 96-117 63-84 (158)
50 3stb_C RNA-editing complex pro 28.1 41 0.0014 27.6 3.1 33 82-117 83-115 (148)
51 3k7u_C MP18 RNA editing comple 26.1 35 0.0012 27.7 2.4 31 83-117 50-81 (148)
52 2vw9_A Single-stranded DNA bin 25.9 37 0.0013 26.6 2.5 22 17-38 55-76 (134)
53 3stb_C RNA-editing complex pro 25.1 64 0.0022 26.4 3.8 31 6-39 85-115 (148)
54 3ulp_A Single-strand binding p 25.1 36 0.0012 26.2 2.2 23 17-39 60-83 (124)
55 3eiv_A Single-stranded DNA-bin 24.6 39 0.0013 28.8 2.5 30 84-117 52-81 (199)
56 1vl8_A Gluconate 5-dehydrogena 24.6 84 0.0029 26.4 4.7 47 67-116 4-51 (267)
57 2dka_A Phosphoacetylglucosamin 24.6 1.4E+02 0.0048 28.6 6.7 34 8-41 218-252 (544)
58 1z9f_A Single-strand binding p 23.9 42 0.0014 27.1 2.5 23 17-39 69-91 (153)
59 1eqq_A Single stranded DNA bin 23.5 44 0.0015 27.7 2.6 22 17-38 60-81 (178)
60 3lgj_A Single-stranded DNA-bin 23.1 43 0.0015 27.6 2.4 30 84-117 70-100 (169)
61 2heo_A Z-DNA binding protein 1 22.8 89 0.003 21.2 3.7 28 214-241 24-51 (67)
62 3afp_A Single-stranded DNA-bin 22.7 46 0.0016 27.3 2.5 23 17-39 59-81 (168)
63 1qvc_A Single stranded DNA bin 22.6 44 0.0015 26.6 2.3 23 17-39 59-81 (145)
64 1txy_A Primosomal replication 22.5 22 0.00077 26.6 0.5 23 95-117 54-76 (104)
65 3tqy_A Single-stranded DNA-bin 22.0 46 0.0016 27.0 2.3 23 17-39 62-84 (158)
66 3k81_C MP18 RNA editing comple 21.6 43 0.0015 27.8 2.1 30 83-116 66-96 (164)
67 1id1_A Putative potassium chan 21.5 1E+02 0.0035 23.4 4.3 32 5-41 3-35 (153)
68 3ull_A DNA binding protein; DN 20.4 49 0.0017 25.7 2.1 23 17-39 73-96 (132)
No 1
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=100.00 E-value=6.8e-66 Score=451.56 Aligned_cols=173 Identities=51% Similarity=0.958 Sum_probs=167.7
Q ss_pred ccccceeEEEcCCCCcchhhHHHHHHHHhCCCEEEEEeecceeecCccccchhhhhhhcceeecCCCCCccccccCchHh
Q psy9430 80 RIFWKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARI 159 (255)
Q Consensus 80 ~If~r~w~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVNaeki~itG~k~~~k~~Y~~~lk~~~~~np~~g~~~~r~P~~I 159 (255)
.-|.++|+||||+||+||||||.||+.|+|||+|||||||+|.+||++++++.||.++++.++++||+++++|+++|++|
T Consensus 5 ~~f~r~W~VIDA~g~~LGRLAS~VAk~Ll~Gd~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~np~~~~~~~r~P~~I 84 (206)
T 3iz5_K 5 SGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKI 84 (206)
T ss_dssp SSCCSSCCEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHHHTTCSCSSSCSCCCCSHHHH
T ss_pred cccceeEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCcccCcCCchHhhhhheeeecceeecCCCcccchhhcCHHHH
Confidence 35789999999999999999999999999999999999999999999999999888889988899999999999999999
Q ss_pred HHHHHhccCCCCChhHHHhhccCeeecCCCCchhhcccccccccccccccCCCCCeeehhhhhhhhCCchHHHHHHHHHH
Q psy9430 160 FWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERK 239 (255)
Q Consensus 160 l~raVrGMLPkkn~~gr~~l~rLkvy~G~~hp~~~qk~~~~p~al~~~~l~~~~k~~~lgel~~~~Gwk~~~~~~~le~~ 239 (255)
|++||+||||+||++|+.+|+||+||+|+||||++|+++++|+|+++.+|+|.++||+|||||+++||||+++|++||++
T Consensus 85 l~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqk~~vvP~al~v~~l~p~rk~~~lg~ls~~~Gwk~~~vv~~le~k 164 (206)
T 3iz5_K 85 LWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTIRELEEK 164 (206)
T ss_dssp HHHHHHHHSCTTSHHHHHHHTTEEEESSCCTTCCSCCBCCTTTBCBTTBCSSSSCEEEHHHHGGGTCTTHHHHHHHHHHH
T ss_pred HHHHHhccCCCCChhHHHHHhCCEEeCCCCCChhhcccccCchHHhhhhcCCCCCeEEHHHHHHHHCchHHHHHHHHHHH
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy9430 240 RREKSIEKIKLHT 252 (255)
Q Consensus 240 r~~~~~~~~~~~~ 252 (255)
||+++++||+++.
T Consensus 165 rk~k~~~~y~~k~ 177 (206)
T 3iz5_K 165 RKEKAKVSYDRRK 177 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999764
No 2
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=100.00 E-value=2.3e-65 Score=446.16 Aligned_cols=170 Identities=49% Similarity=0.877 Sum_probs=165.2
Q ss_pred cceeEEEcCCCCcchhhHHHHHHHHhCCCEEEEEeecceeecCccccchhhhhhhcceeecCCCCCccccccCchHhHHH
Q psy9430 83 WKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWK 162 (255)
Q Consensus 83 ~r~w~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVNaeki~itG~k~~~k~~Y~~~lk~~~~~np~~g~~~~r~P~~Il~r 162 (255)
.++|+||||+||+||||||.||+.|+|||+|||||||+|.+||++++++.||.++++.++++||+.|++++++|++||++
T Consensus 2 ~~~w~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~~~~r~P~rIi~~ 81 (198)
T 4a17_I 2 FDKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQHFRAPSRIFWR 81 (198)
T ss_dssp CSSCEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSCCCCCSHHHHHHH
T ss_pred CccEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCccccccCchhhheeeeeeccccccCCCCccccccccCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999888888888999999999999999999999
Q ss_pred HHhccCCCCChhHHHhhccCeeecCCCCchhhcccccccccccccccCCCCCeeehhhhhhhhCCchHHHHHHHHHHHHH
Q psy9430 163 TVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRRE 242 (255)
Q Consensus 163 aVrGMLPkkn~~gr~~l~rLkvy~G~~hp~~~qk~~~~p~al~~~~l~~~~k~~~lgel~~~~Gwk~~~~~~~le~~r~~ 242 (255)
||+||||+||++|+.+|+||+||+|+||||++|+++++|+|+++.+|+|.++||+|||||+++||||++||++||++||+
T Consensus 82 AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~al~v~rl~~~rk~~~lg~ls~~~Gwk~~~vv~~le~krk~ 161 (198)
T 4a17_I 82 AVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRRA 161 (198)
T ss_dssp HHHTTTTTTSHHHHHHHHHCEECSSCCGGGTTSCCBCCGGGBHHHHSCTTSCEEEHHHHHHHTTCTTHHHHHHHHHHHHH
T ss_pred HHhccCCCCChhHHHHHhCcEEecCCCCChhhccccccchHhhhhhcCCCCCeEEHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q psy9430 243 KSIEKIKLHT 252 (255)
Q Consensus 243 ~~~~~~~~~~ 252 (255)
++++||+++.
T Consensus 162 k~~~~y~~k~ 171 (198)
T 4a17_I 162 RAKTYHDKKV 171 (198)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999764
No 3
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=100.00 E-value=3.1e-63 Score=432.76 Aligned_cols=169 Identities=55% Similarity=0.975 Sum_probs=162.8
Q ss_pred cceeEEEcCCCCcchhhHHHHHHHHhCCCEEEEEeecceeecCccccchhhhhhhcceeecCCCCCccccccCchHhHHH
Q psy9430 83 WKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWK 162 (255)
Q Consensus 83 ~r~w~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVNaeki~itG~k~~~k~~Y~~~lk~~~~~np~~g~~~~r~P~~Il~r 162 (255)
...|+||||+|++||||||.||+.|+.||+|||||||+|.+||+++++|.||.+....++..+|+++++++++|++||++
T Consensus 3 ~~~~vVIDA~g~vLGRLAS~VAk~L~~Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P~~il~~ 82 (199)
T 4b6a_O 3 SQPVVVIDAKDHLLGRLASTIAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYK 82 (199)
T ss_dssp CCSEEEEECTTBBHHHHHHHHHHHHHTTCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSCCCCCSHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHHHhhcCcHHHHHH
Confidence 46899999999999999999999999999999999999999999999999777767777888999999999999999999
Q ss_pred HHhccCCCCChhHHHhhccCeeecCCCCchhhcccccccccccccccCCCCCeeehhhhhhhhCCchHHHHHHHHHHHHH
Q psy9430 163 TVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRRE 242 (255)
Q Consensus 163 aVrGMLPkkn~~gr~~l~rLkvy~G~~hp~~~qk~~~~p~al~~~~l~~~~k~~~lgel~~~~Gwk~~~~~~~le~~r~~ 242 (255)
|||||||+||++|+.+|+||+||+|+||||++|+++++|+|+++.+++|.++||||||||++|||||+++|++||++||+
T Consensus 83 aVrGMLP~K~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~Al~~~~lkp~~Ky~~lg~ls~~~Gwk~~~vv~~le~krk~ 162 (199)
T 4b6a_O 83 AIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKV 162 (199)
T ss_dssp HHHTTSCTTSHHHHHHHHTEEECSSCCSGGGGSCCBBCGGGBHHHHSCTTCCEEEHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHhccCCCCChhhhHHHhccEEeCCCCCCcccCCCEecchHHHhhccCCCCCeEEhhhhHHHhCccHHHHHHHHHHHHHH
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy9430 243 KSIEKIKLH 251 (255)
Q Consensus 243 ~~~~~~~~~ 251 (255)
++++||+++
T Consensus 163 k~~~~~~~k 171 (199)
T 4b6a_O 163 RSAEYYAKK 171 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 4
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=7.6e-64 Score=437.99 Aligned_cols=171 Identities=58% Similarity=1.038 Sum_probs=132.4
Q ss_pred ccceeEEEcCCCCcchhhHHHHHHHHhCCCEEEEEeecceeecCccccchhhhhhhcceeecCCCCCccccccCchHhHH
Q psy9430 82 FWKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFW 161 (255)
Q Consensus 82 f~r~w~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVNaeki~itG~k~~~k~~Y~~~lk~~~~~np~~g~~~~r~P~~Il~ 161 (255)
..++|+||||+||+||||||.||+.|+.||+|||||||+|.|||++++++.||.+|++.++++||+.|++++++|++||+
T Consensus 2 ~~r~w~VIDA~g~~LGRLAS~VAk~lL~G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~G~~~~r~P~~I~~ 81 (203)
T 2zkr_j 2 AEVQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGPYDFRAPSRIFW 81 (203)
T ss_dssp -----CEEECTTBBHHHHHHHHHHHHHHTCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSCCCCCCSHHHHHH
T ss_pred CCccEEEEeCCCCchHHHHHHHHHHHhCCCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCCCccccCChHHHHH
Confidence 46899999999999999999999988889999999999999999999999977699999999999999999999999999
Q ss_pred HHHhccCCCCChhHHHhhccCeeecCCCCchhhcccccccccccccccCCCCCeeehhhhhhhhCCchHHHHHHHHHHHH
Q psy9430 162 KTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRR 241 (255)
Q Consensus 162 raVrGMLPkkn~~gr~~l~rLkvy~G~~hp~~~qk~~~~p~al~~~~l~~~~k~~~lgel~~~~Gwk~~~~~~~le~~r~ 241 (255)
+||+||||+||++|+.+|+||+||+|+||||++|+|+++|+|+++.+++|.++||||||||++|||||+++|++||++||
T Consensus 82 ~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqkp~vvp~a~~v~~~~~~~ky~~lg~ls~~~Gwk~~~vv~~le~kRk 161 (203)
T 2zkr_j 82 RTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRK 161 (203)
T ss_dssp HHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGBCCSSSSSCCSCEEEHHHHC-------------------
T ss_pred HHHHhhCCCCChhHHHHHhCcEEeCCCCCchhhcCCcccchhhhhhhcCCCCceEEHHHHHHHhCccHHHHHHHHHHHHH
Confidence 99999999988999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q psy9430 242 EKSIEKIKLHT 252 (255)
Q Consensus 242 ~~~~~~~~~~~ 252 (255)
+++++||+++.
T Consensus 162 ~k~~~~y~~kk 172 (203)
T 2zkr_j 162 EKAKIHYRKKK 172 (203)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 99999999764
No 5
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=2.7e-56 Score=383.74 Aligned_cols=152 Identities=59% Similarity=1.043 Sum_probs=146.2
Q ss_pred EEEcCCCCcchhhHHHHHHHHhCCCEEEEEeecceeecCccccchhhhhhhcceeecCCCCCccccccCchHhHHHHHhc
Q psy9430 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTVRG 166 (255)
Q Consensus 87 ~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVNaeki~itG~k~~~k~~Y~~~lk~~~~~np~~g~~~~r~P~~Il~raVrG 166 (255)
+||||+||+||||||+||++|+|||+|||||||+|.|||+|+++|.||.++++.++++||+.+++++++|++||++||+|
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r~P~~Il~~AVrG 80 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRG 80 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHTTTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCSSTTTHHHHHTTS
T ss_pred CEEcCCCCchHHHHHHHHHHHhCCCEEEEEeCeeeEEcCchHhhEhheeccCcccccCCccccccccCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998888898888889989999999999999999999
Q ss_pred cCCCCChhHHHhhccCeeecCCCCchhhcccccccccccccccCCCCCeeehhhhhhhhCCchHHHHHHHHH
Q psy9430 167 MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLER 238 (255)
Q Consensus 167 MLPkkn~~gr~~l~rLkvy~G~~hp~~~qk~~~~p~al~~~~l~~~~k~~~lgel~~~~Gwk~~~~~~~le~ 238 (255)
|||+||++|+.+|+|||||+|+||||++|+++++|+++++.+++|.++||+|||||+++||||+++++.--+
T Consensus 81 MLP~K~~lGr~~l~rLkVy~G~~hp~~aqk~~vvp~Alrv~RLkp~rKy~tLGels~~vGwk~~~~~~~~~~ 152 (178)
T 3jyw_M 81 MVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKAAAAAAAAAA 152 (178)
T ss_dssp SSCSSSHHHHHHHHHCCEESSCCCCSCCSCSSSCCSSCCCCCSSSCSCCCCHHHHSSTTTCCCHHHHHTHHH
T ss_pred HhhcccHhHHHHHhCCeeeCCCCCchhhcccccCchHhhhhccCCCCceEEcchhhhhcCCcchhhHHHHHH
Confidence 999879999999999999999999999999999999999999999999999999999999999999986544
No 6
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=3.4e-55 Score=365.21 Aligned_cols=142 Identities=41% Similarity=0.573 Sum_probs=122.6
Q ss_pred eEEEcCCCCcchhhHHHHHHHHhCCCEEEEEeecceeecCccccchhhhhhhcceeecCCCCCccccccCchHhHHHHHh
Q psy9430 86 PILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTVR 165 (255)
Q Consensus 86 w~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVNaeki~itG~k~~~k~~Y~~~lk~~~~~np~~g~~~~r~P~~Il~raVr 165 (255)
|+||||+||+||||||.||+.|+|||+|||||||+|.+||+|+++|.||.+.....++.+|..+++++++|++||++||+
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P~~ii~~aVr 80 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIR 80 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHC-------------CCCSHHHHHHHHHH
T ss_pred CEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCeeeEecccHHhheeeeeecCCCCCCcCCccCcccccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999665444445567763399999999999999999
Q ss_pred ccCCCCChhHHHhhccCeeecCCCCchhhcccccccccccccccCCCCCeeehhhhhhhhCCch
Q psy9430 166 GMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKY 229 (255)
Q Consensus 166 GMLPkkn~~gr~~l~rLkvy~G~~hp~~~qk~~~~p~al~~~~l~~~~k~~~lgel~~~~Gwk~ 229 (255)
||||+||++|+++|+|||||+|+||||++|+|+++|.|+. .+++ .++||||||||+++||||
T Consensus 81 GMLP~k~~lgr~~l~rLkVy~G~~hp~~aqkp~~~~~a~~-~~~~-~~k~~~lg~ls~~~Gwk~ 142 (142)
T 1j3a_A 81 GMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHV-SRLS-RPKYVTVGEVAKFLGGKF 142 (142)
T ss_dssp TTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBG-GGSS-SCCEEEHHHHHHHHTCCC
T ss_pred hhccCCCHHHHHHHhCcEEeCCCCCCccccCcEeccHHHh-hccC-CCCeEEHHHHHHHhCCCC
Confidence 9999779999999999999999999999999999999985 6775 899999999999999997
No 7
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=100.00 E-value=2.6e-52 Score=348.72 Aligned_cols=140 Identities=31% Similarity=0.437 Sum_probs=128.0
Q ss_pred cccceeEEEcCCCCcchhhHHHHHHHHhCCCEEEEEeecceeecCccccchhhhhhhcceeecCCCCCccccccCchHhH
Q psy9430 81 IFWKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIF 160 (255)
Q Consensus 81 If~r~w~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVNaeki~itG~k~~~k~~Y~~~lk~~~~~np~~g~~~~r~P~~Il 160 (255)
.+.++|+||||+||+||||||.||+.|+|||+|||||||+|.+||+|+++|.||. |...... +++++++++|++||
T Consensus 4 a~~~~w~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~-htg~~g~---~~~~~~~r~P~~i~ 79 (145)
T 1vq8_J 4 AEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYE-KRVDIGN---DNGYFYPKRPDGIF 79 (145)
T ss_dssp CCCCCSEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHH-HHHHCCC---SSCCCCCCSHHHHH
T ss_pred cccccEEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCEeeEecchhhhheeeeE-EeCCCCC---CHHHHhhcChHHHH
Confidence 4567899999999999999999999999999999999999999999999999554 4433322 68999999999999
Q ss_pred HHHHhccCCCCChhHHHhhccCeeecCCCCchhhcccccccccccccccCCCCCeeehhhhhhhhCCch
Q psy9430 161 WKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKY 229 (255)
Q Consensus 161 ~raVrGMLPkkn~~gr~~l~rLkvy~G~~hp~~~qk~~~~p~al~~~~l~~~~k~~~lgel~~~~Gwk~ 229 (255)
++||+||||+||++|+++|+|||||+|+||| |+++++|.|+. .+++ .+|||||||||+++||||
T Consensus 80 ~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p---~k~~vv~~a~~-~~l~-~~k~~~lg~ls~~~Gwk~ 143 (145)
T 1vq8_J 80 KRTIRGMLPHKKQRGREAFESVRVYLGNPYD---EDGEVLDGTSL-DRLS-NIKFVTLGEISETLGANK 143 (145)
T ss_dssp HHHHHTTTTTTSHHHHHHHHTEEECSSCCSS---SCCBCCTTCBC-CTTS-CCSEEEHHHHHHHHTCCC
T ss_pred HHHHHhhcCCCCHHHHHHHhCeEEECCCCCC---CCceeeehhhh-hccC-CCCeEEHHHHHHHhCCcc
Confidence 9999999997799999999999999999999 89999999974 6775 899999999999999998
No 8
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=2.9e-45 Score=305.00 Aligned_cols=122 Identities=25% Similarity=0.398 Sum_probs=111.5
Q ss_pred CCcccCCCccccceeEEEcCCCCcchhhHHHHHHHHh------------CCCEEEEEeecceeecCccccchhhh-----
Q psy9430 72 PFHYRAPARIFWKTPILIDGRGHLLGRLASIVAKTIL------------NGNRVVVVRAELLNISGNFFRNKLKY----- 134 (255)
Q Consensus 72 p~t~raPs~If~r~w~vIDA~g~~LGRLAs~VAk~Ll------------~Gd~VVVVNaeki~itG~k~~~k~~Y----- 134 (255)
|.||.+++.++.++|+||||+||+||||||.||++|+ |||+|||||||+|.+||+++++|.||
T Consensus 1 mkt~~~~~~~~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~htgy 80 (142)
T 3r8s_J 1 MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGH 80 (142)
T ss_dssp CCCCCCCTTTCCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCEECSS
T ss_pred CCcccCChhhccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEEecCc
Confidence 4688999999999999999999999999999999999 99999999999999999999999953
Q ss_pred hhhcceeecCCCCCccccccCchHhHHHHHhccCCCCChhHHHhhccCeeecCCCCchhhccccc
Q psy9430 135 LAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLC 199 (255)
Q Consensus 135 ~~~lk~~~~~np~~g~~~~r~P~~Il~raVrGMLPkkn~~gr~~l~rLkvy~G~~hp~~~qk~~~ 199 (255)
+++++.. +++++++++|++||++||+||||+ |++|+++|+||+||+|+||||++|+|.+
T Consensus 81 pGg~k~~-----~~~~~~~r~P~~ii~~aVrGMLPk-n~lgr~~l~rLkVy~G~~hph~aq~p~~ 139 (142)
T 3r8s_J 81 IGGIKQA-----TFEEMIARRPERVIEIAVKGMLPK-GPLGRAMFRKLKVYAGNEHNHAAQQPQV 139 (142)
T ss_dssp TTCEECC-----BHHHHHHHCSHHHHHHHHHHHSCS-SHHHHHHHTTEEECSSSCCSCGGGCCEE
T ss_pred CCCcccc-----CHHHHHhhCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEECCCCCCcccCCCee
Confidence 2334333 679999999999999999999996 9999999999999999999999999543
No 9
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=4.3e-45 Score=303.33 Aligned_cols=120 Identities=30% Similarity=0.381 Sum_probs=110.8
Q ss_pred CCcccCCCccccceeEEEcCCCCcchhhHHHHHHHHh------------CCCEEEEEeecceeecCccccchhh-----h
Q psy9430 72 PFHYRAPARIFWKTPILIDGRGHLLGRLASIVAKTIL------------NGNRVVVVRAELLNISGNFFRNKLK-----Y 134 (255)
Q Consensus 72 p~t~raPs~If~r~w~vIDA~g~~LGRLAs~VAk~Ll------------~Gd~VVVVNaeki~itG~k~~~k~~-----Y 134 (255)
|.||.++ .+.++|+||||+||+||||||.||++|+ |||+|||||||+|.+||+++++|.| |
T Consensus 1 m~t~~~~--~~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~htgy 78 (140)
T 3v2d_N 1 MKTYVPK--QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGY 78 (140)
T ss_dssp CCCCCCC--CCCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEEECSS
T ss_pred Ccccccc--cccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEEeccc
Confidence 4577777 8899999999999999999999999998 9999999999999999999999996 4
Q ss_pred hhhcceeecCCCCCccccccCchHhHHHHHhccCCCCChhHHHhhccCeeecCCCCchhhccccc
Q psy9430 135 LAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLC 199 (255)
Q Consensus 135 ~~~lk~~~~~np~~g~~~~r~P~~Il~raVrGMLPkkn~~gr~~l~rLkvy~G~~hp~~~qk~~~ 199 (255)
+++++.. +++++++++|++||++||+||||+ |++|+++|+||+||+|+||||++|+|.+
T Consensus 79 pGglk~~-----~~~~~~~r~P~~ii~~aVrGMLPk-~~lgr~~l~rLkVy~G~~hph~aq~p~~ 137 (140)
T 3v2d_N 79 PGGLKKI-----PLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQRPEK 137 (140)
T ss_dssp TTCEEEE-----EHHHHHHHCTHHHHHHHHHHTSCS-SHHHHHHHHTEEECSSSCCSCGGGCCEE
T ss_pred CCcceec-----cHHHhhhhCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEeCCCCCCcccCCCee
Confidence 4567776 689999999999999999999998 9999999999999999999999999443
No 10
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=6.3e-44 Score=298.86 Aligned_cols=127 Identities=18% Similarity=0.241 Sum_probs=110.8
Q ss_pred CCcccCCCccc---cceeEEEcCCCCcchhhHHHHHHHHh------------CCCEEEEEeecceeecCccccchhhhhh
Q psy9430 72 PFHYRAPARIF---WKTPILIDGRGHLLGRLASIVAKTIL------------NGNRVVVVRAELLNISGNFFRNKLKYLA 136 (255)
Q Consensus 72 p~t~raPs~If---~r~w~vIDA~g~~LGRLAs~VAk~Ll------------~Gd~VVVVNaeki~itG~k~~~k~~Y~~ 136 (255)
|.|+.+++..+ .++|+||||+||+||||||.||++|+ |||+|||||||+|.+||+|+++|.| +.
T Consensus 1 m~t~~~k~~~~~~~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~y-y~ 79 (148)
T 2ftc_H 1 MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVY-SS 79 (148)
T ss_pred CcccccchhhhhcccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhhee-ee
Confidence 34666666555 99999999999999999999999999 9999999999999999999999994 44
Q ss_pred hcceee-cCCCCCccccccCchHhHHHHHhccCCCCChhHHHhhccCeeecCCCCchhhcccccc
Q psy9430 137 FLNKRC-NVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCV 200 (255)
Q Consensus 137 ~lk~~~-~~np~~g~~~~r~P~~Il~raVrGMLPkkn~~gr~~l~rLkvy~G~~hp~~~qk~~~~ 200 (255)
|..+.. ..+.+++++++++|++||++||+||||+ |++|+++|+||+||+|++|||++|+|+++
T Consensus 80 htg~pGg~k~~~~~~~~~r~P~~ii~~aVrGMLPk-n~lgr~~l~rLkVy~G~~hP~~aq~p~~~ 143 (148)
T 2ftc_H 80 HTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPK-NLHRRTMMERLHLFPDEYIPEDILKNLVE 143 (148)
T ss_pred eeCCcCCceeccHHHHhhcCHHHHHHHHHHhcCCC-CchHHHHHhCcEEeCCCCCChHHhCCeee
Confidence 554422 2223789999999999999999999998 89999999999999999999999995543
No 11
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=2.4e-44 Score=304.75 Aligned_cols=122 Identities=29% Similarity=0.336 Sum_probs=110.8
Q ss_pred CCCCcccCCCccccceeEEEcCCCCcchhhHHHHHHHHh------------CCCEEEEEeecceeecCccccchhhh---
Q psy9430 70 RGPFHYRAPARIFWKTPILIDGRGHLLGRLASIVAKTIL------------NGNRVVVVRAELLNISGNFFRNKLKY--- 134 (255)
Q Consensus 70 ~Gp~t~raPs~If~r~w~vIDA~g~~LGRLAs~VAk~Ll------------~Gd~VVVVNaeki~itG~k~~~k~~Y--- 134 (255)
.+|.||.++ .+.++|+||||+||+||||||.||+.|+ |||+|||||||+|.+||+|+++|.||
T Consensus 22 ~~mkt~~~k--~~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~yy~ht 99 (163)
T 3f1f_N 22 ALVKTYVPK--QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYS 99 (163)
T ss_dssp ---CCCCCC--CCCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECCBC
T ss_pred hcCcccccc--cccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhheeeEEec
Confidence 358888887 8899999999999999999999999998 99999999999999999999999963
Q ss_pred --hhhcceeecCCCCCccccccCchHhHHHHHhccCCCCChhHHHhhccCeeecCCCCchhhccccc
Q psy9430 135 --LAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLC 199 (255)
Q Consensus 135 --~~~lk~~~~~np~~g~~~~r~P~~Il~raVrGMLPkkn~~gr~~l~rLkvy~G~~hp~~~qk~~~ 199 (255)
+++++.. +++++++++|++||++||+||||+ |++|+++|+||+||+|+||||++|+|..
T Consensus 100 gypGglk~~-----t~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVY~G~~hPh~aQ~P~~ 160 (163)
T 3f1f_N 100 GYPGGLKKI-----PLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQRPEK 160 (163)
T ss_dssp SSTTCBCCE-----EHHHHHHSSCHHHHHHHHHTTSCS-SHHHHHHHHTCEECSSSCCCCCSCCCBC
T ss_pred CcCCcceee-----ehHHhhhcCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEECCCCCCcccCCCee
Confidence 4557666 689999999999999999999998 9999999999999999999999999543
No 12
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=100.00 E-value=2.3e-43 Score=301.66 Aligned_cols=123 Identities=25% Similarity=0.328 Sum_probs=110.9
Q ss_pred CCCcccCCCccccceeEEEcCCCCcchhhHHHHHHHHh------------CCCEEEEEeecceeecCccccchhhh----
Q psy9430 71 GPFHYRAPARIFWKTPILIDGRGHLLGRLASIVAKTIL------------NGNRVVVVRAELLNISGNFFRNKLKY---- 134 (255)
Q Consensus 71 Gp~t~raPs~If~r~w~vIDA~g~~LGRLAs~VAk~Ll------------~Gd~VVVVNaeki~itG~k~~~k~~Y---- 134 (255)
-|.||.+++ +.++|+||||+||+||||||.||++|+ |||+|||||||+|.+||+|+++|.||
T Consensus 28 ~m~T~~~k~--~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~K~yy~htg 105 (174)
T 2zjr_G 28 KVKTYIPKN--DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTG 105 (174)
T ss_dssp --CCCCCCC--SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEECCS
T ss_pred eeeeeccCc--ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhceEEEEecC
Confidence 467888776 999999999999999999999999999 99999999999999999999999963
Q ss_pred -hhhcceeecCCCCCccccccCchHhHHHHHhccCCCCChhHHHhhccCeeecCCCCchhhccccccc
Q psy9430 135 -LAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVP 201 (255)
Q Consensus 135 -~~~lk~~~~~np~~g~~~~r~P~~Il~raVrGMLPkkn~~gr~~l~rLkvy~G~~hp~~~qk~~~~p 201 (255)
+++++.. +++++++++|++||++||+||||+ |++|+++|+||+||+|+||||++|+|+++.
T Consensus 106 ypGGlk~~-----~~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVy~G~~hph~aqkp~~l~ 167 (174)
T 2zjr_G 106 YQGGLKTE-----TAREALSKHPERVIEHAVFGMLPK-GRQGRAMHTRLKVYAGETHPHSAQKPQVLK 167 (174)
T ss_dssp SCSSCCEE-----EESTTTTSCHHHHHHHHHGGGSCC-SHHHHHHHTTCEECSCSTGGGGSCCSCCCC
T ss_pred cCCCcccc-----cHHHHhhcChHHHHHHHHHhcCCC-ChhHHHHHhCeEEECCCCCChhccCCeEEe
Confidence 3346655 678999999999999999999997 999999999999999999999999965543
No 13
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.2e-42 Score=309.62 Aligned_cols=139 Identities=28% Similarity=0.361 Sum_probs=102.4
Q ss_pred CCCCC----cccCCCcc---ccceeEEEcCCCCcchhhHHHHHHHHh------------CCCEEEEEeecceeecCcccc
Q psy9430 69 ARGPF----HYRAPARI---FWKTPILIDGRGHLLGRLASIVAKTIL------------NGNRVVVVRAELLNISGNFFR 129 (255)
Q Consensus 69 ~~Gp~----t~raPs~I---f~r~w~vIDA~g~~LGRLAs~VAk~Ll------------~Gd~VVVVNaeki~itG~k~~ 129 (255)
..|+. ||.+++.. +.++|+||||+||+||||||.||++|+ |||+|||||||+|.+||+|++
T Consensus 90 ~~g~d~~~kT~~~k~~~v~~~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD~VVVINAeKI~lTG~K~~ 169 (250)
T 3bbo_L 90 ATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRT 169 (250)
T ss_dssp ----------------------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSCCCEESCCSSCCCCSGGGG
T ss_pred hcCCCccceeecCChhhcccccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCCEEEEEecceEEecCChhh
Confidence 35666 77776666 699999999999999999999999999 999999999999999999999
Q ss_pred chhhhhhhcceeecCCC-CCccccccCchHhHHHHHhccCCCCChhHHHhhccCeeecCCCCchhhcccccccccccccc
Q psy9430 130 NKLKYLAFLNKRCNVNP-ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVC 208 (255)
Q Consensus 130 ~k~~Y~~~lk~~~~~np-~~g~~~~r~P~~Il~raVrGMLPkkn~~gr~~l~rLkvy~G~~hp~~~qk~~~~p~al~~~~ 208 (255)
+|. |++|..+...... +++++++++|++||++||+||||+ |++|+.+|+|||||+|++|||++|+|+++|-+++..+
T Consensus 170 ~K~-Y~rHsgyPGGlK~~t~~~l~~r~PerIi~kAVrGMLPk-n~lGr~~lkrLkVY~G~~HPh~aQkp~~l~ia~k~v~ 247 (250)
T 3bbo_L 170 QKL-YRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPK-GRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIR 247 (250)
T ss_dssp TCC-CBCCCSSSSCCCBCCHHHHTTSCTTHHHHHHHHTTSCS-SSSHHHHHTTCCCCSSSCCSCTTSCC-----------
T ss_pred ceE-EEEecCcCCCcccccHHHhhhcChHHHHHHHHHhcCCC-CchHHHHHhCcEEeCCCCCCHHHcCCeeechhhheee
Confidence 999 5455444322211 689999999999999999999998 9999999999999999999999999999998876554
Q ss_pred c
Q psy9430 209 L 209 (255)
Q Consensus 209 l 209 (255)
+
T Consensus 248 ~ 248 (250)
T 3bbo_L 248 V 248 (250)
T ss_dssp -
T ss_pred c
Confidence 4
No 14
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=99.94 E-value=2.7e-28 Score=213.62 Aligned_cols=85 Identities=56% Similarity=1.010 Sum_probs=82.1
Q ss_pred CCCCcccEEEeCCCCchhhHHHHHHHHHcCCCEEEEEeccceeeccchhhhhhhhHHHhhhhhccCCCCCCCcccCCCcc
Q psy9430 2 PGISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARI 81 (255)
Q Consensus 2 ~~~~~~w~viDa~~~~lGrlas~iA~~L~~Gd~vvvina~~i~~tG~k~~~k~~~~~~~~kr~~~np~~Gp~t~raPs~I 81 (255)
.||+|+|+||||+|++||||||+||+.|++||+|||||||+|.|||+|+++|.||..|+++++++||..|+++++.|+++
T Consensus 5 ~~f~r~W~VIDA~g~~LGRLAS~VAk~Ll~Gd~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~np~~~~~~~r~P~~I 84 (206)
T 3iz5_K 5 SGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKI 84 (206)
T ss_dssp SSCCSSCCEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHHHTTCSCSSSCSCCCCSHHHH
T ss_pred cccceeEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCcccCcCCchHhhhhheeeecceeecCCCcccchhhcCHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccee
Q psy9430 82 FWKTP 86 (255)
Q Consensus 82 f~r~w 86 (255)
|++..
T Consensus 85 l~~AV 89 (206)
T 3iz5_K 85 LWRTI 89 (206)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99753
No 15
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=99.93 E-value=4.6e-27 Score=204.87 Aligned_cols=100 Identities=51% Similarity=0.857 Sum_probs=90.0
Q ss_pred CCcccEEEeCCCCchhhHHHHHHHHHcCCCEEEEEeccceeeccchhhhhhhhHHHhhhhhccCCCCCCCcccCCCcccc
Q psy9430 4 ISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFW 83 (255)
Q Consensus 4 ~~~~w~viDa~~~~lGrlas~iA~~L~~Gd~vvvina~~i~~tG~k~~~k~~~~~~~~kr~~~np~~Gp~t~raPs~If~ 83 (255)
|.++|+||||+|++||||||+||++|+|||+|||||||+|.|||+|+++|.||..|+++++++||..|+++++.|+++|+
T Consensus 1 ~~~~w~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~~~~r~P~rIi~ 80 (198)
T 4a17_I 1 MFDKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQHFRAPSRIFW 80 (198)
T ss_dssp CCSSCEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSCCCCCSHHHHHH
T ss_pred CCccEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCccccccCchhhheeeeeeccccccCCCCccccccccCHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEcCCCCcc--hhhHHHHHHHHh
Q psy9430 84 KTPILIDGRGHLL--GRLASIVAKTIL 108 (255)
Q Consensus 84 r~w~vIDA~g~~L--GRLAs~VAk~Ll 108 (255)
+.. .|+++ ++|....-+.|.
T Consensus 81 ~AV-----rGMLPkK~~lGr~~l~rLk 102 (198)
T 4a17_I 81 RAV-----RGMLPHKTPKGAAALERLK 102 (198)
T ss_dssp HHH-----HTTTTTTSHHHHHHHHHCE
T ss_pred HHH-----hccCCCCChhHHHHHhCcE
Confidence 764 36666 566665555554
No 16
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.92 E-value=5.7e-27 Score=204.97 Aligned_cols=101 Identities=56% Similarity=0.959 Sum_probs=83.0
Q ss_pred CCCcccEEEeCCCCchhhHHHHHHHHHcCCCEEEEEeccceeeccchhhhhhhhHHHhhhhhccCCCCCCCcccCCCccc
Q psy9430 3 GISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIF 82 (255)
Q Consensus 3 ~~~~~w~viDa~~~~lGrlas~iA~~L~~Gd~vvvina~~i~~tG~k~~~k~~~~~~~~kr~~~np~~Gp~t~raPs~If 82 (255)
+.+++|+||||+|++||||||+||+.|+.||+|||||||+|.|||+|+++|+||++++++++++||..|+++++.|+++|
T Consensus 1 ~~~r~w~VIDA~g~~LGRLAS~VAk~lL~G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~G~~~~r~P~~I~ 80 (203)
T 2zkr_j 1 MAEVQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGPYDFRAPSRIF 80 (203)
T ss_dssp ------CEEECTTBBHHHHHHHHHHHHHHTCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSCCCCCCSHHHHH
T ss_pred CCCccEEEEeCCCCchHHHHHHHHHHHhCCCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCCCccccCChHHHH
Confidence 46799999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEcCCCCcch--hhHHHHHHHHh
Q psy9430 83 WKTPILIDGRGHLLG--RLASIVAKTIL 108 (255)
Q Consensus 83 ~r~w~vIDA~g~~LG--RLAs~VAk~Ll 108 (255)
++.. .|+++- +|....-+.|.
T Consensus 81 ~~AV-----rGMLPkk~~lGr~~l~rLk 103 (203)
T 2zkr_j 81 WRTV-----RGMLPHKTKRGQAALDRLK 103 (203)
T ss_dssp HHHH-----HHHSCTTSHHHHHHHHTEE
T ss_pred HHHH-----HhhCCCCChhHHHHHhCcE
Confidence 9754 344442 45444445454
No 17
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=99.92 E-value=4.8e-26 Score=189.52 Aligned_cols=79 Identities=41% Similarity=0.477 Sum_probs=64.2
Q ss_pred cEEEeCCCCchhhHHHHHHHHHcCCCEEEEEeccceeeccchhhhhhhhHHHhhhhhccCCCCCCCcccCCCcccccee
Q psy9430 8 PILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTP 86 (255)
Q Consensus 8 w~viDa~~~~lGrlas~iA~~L~~Gd~vvvina~~i~~tG~k~~~k~~~~~~~~kr~~~np~~Gp~t~raPs~If~r~w 86 (255)
|+||||+|++||||||+||++|+|||+|||||||+|.|||+|+++|.||..+...+.+.+|..|+.+++.|+++|++..
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P~~ii~~aV 79 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTI 79 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHC-------------CCCSHHHHHHHHH
T ss_pred CEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCeeeEecccHHhheeeeeecCCCCCCcCCccCcccccCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998779999999999999754
No 18
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=99.91 E-value=2.3e-25 Score=194.26 Aligned_cols=100 Identities=52% Similarity=0.840 Sum_probs=90.2
Q ss_pred CCcccEEEeCCCCchhhHHHHHHHHHcCCCEEEEEeccceeeccchhhhhhhhHHHhhhhhccCCCCCCCcccCCCcccc
Q psy9430 4 ISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFW 83 (255)
Q Consensus 4 ~~~~w~viDa~~~~lGrlas~iA~~L~~Gd~vvvina~~i~~tG~k~~~k~~~~~~~~kr~~~np~~Gp~t~raPs~If~ 83 (255)
-+++|+||||+|++||||||+||+.|++||+|||||||+|.|||+|+++|+||..+...+++.||..||++++.|+++|+
T Consensus 2 s~~~~vVIDA~g~vLGRLAS~VAk~L~~Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P~~il~ 81 (199)
T 4b6a_O 2 SSQPVVVIDAKDHLLGRLASTIAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILY 81 (199)
T ss_dssp CCCSEEEEECTTBBHHHHHHHHHHHHHTTCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSCCCCCSHHHHHH
T ss_pred CCCCEEEEECCCCchHHHHHHHHHHhcCCCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHHHhhcCcHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEcCCCCcc--hhhHHHHHHHHh
Q psy9430 84 KTPILIDGRGHLL--GRLASIVAKTIL 108 (255)
Q Consensus 84 r~w~vIDA~g~~L--GRLAs~VAk~Ll 108 (255)
+.. +|+++ ++|....-+.|.
T Consensus 82 ~aV-----rGMLP~K~~lGr~~l~rLk 103 (199)
T 4b6a_O 82 KAI-----RGMVSHKTARGKAALERLK 103 (199)
T ss_dssp HHH-----HTTSCTTSHHHHHHHHTEE
T ss_pred HHH-----hccCCCCChhhhHHHhccE
Confidence 864 57766 566666555443
No 19
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=99.90 E-value=6.5e-25 Score=183.21 Aligned_cols=95 Identities=29% Similarity=0.355 Sum_probs=80.8
Q ss_pred CcccEEEeCCCCchhhHHHHHHHHHcCCCEEEEEeccceeeccchhhhhhhhHHHhhhhhccCCCCCCCcccCCCccccc
Q psy9430 5 SRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWK 84 (255)
Q Consensus 5 ~~~w~viDa~~~~lGrlas~iA~~L~~Gd~vvvina~~i~~tG~k~~~k~~~~~~~~kr~~~np~~Gp~t~raPs~If~r 84 (255)
.++|+||||+|++||||||+||++|+|||+|||||||+|.|||+|+++|.||..+...++ +.|+.+++.|+++|++
T Consensus 6 ~~~w~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~htg~~g~----~~~~~~~r~P~~i~~~ 81 (145)
T 1vq8_J 6 FDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGN----DNGYFYPKRPDGIFKR 81 (145)
T ss_dssp CCCSEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCC----SSCCCCCCSHHHHHHH
T ss_pred cccEEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCEeeEecchhhhheeeeEEeCCCCC----CHHHHhhcChHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999988885 6799999999999997
Q ss_pred eeEEEcCCCCcc--hhhHHHHHHHHh
Q psy9430 85 TPILIDGRGHLL--GRLASIVAKTIL 108 (255)
Q Consensus 85 ~w~vIDA~g~~L--GRLAs~VAk~Ll 108 (255)
.. +|++. ++|....-+.|.
T Consensus 82 aV-----rGMLP~K~~lgr~~l~rLk 102 (145)
T 1vq8_J 82 TI-----RGMLPHKKQRGREAFESVR 102 (145)
T ss_dssp HH-----HTTTTTTSHHHHHHHHTEE
T ss_pred HH-----HhhcCCCCHHHHHHHhCeE
Confidence 54 34443 344444444444
No 20
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.89 E-value=3.5e-25 Score=190.33 Aligned_cols=95 Identities=57% Similarity=0.955 Sum_probs=86.9
Q ss_pred EEEeCCCCchhhHHHHHHHHHcCCCEEEEEeccceeeccchhhhhhhhHHHhhhhhccCCCCCCCcccCCCccccceeEE
Q psy9430 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTPIL 88 (255)
Q Consensus 9 ~viDa~~~~lGrlas~iA~~L~~Gd~vvvina~~i~~tG~k~~~k~~~~~~~~kr~~~np~~Gp~t~raPs~If~r~w~v 88 (255)
+||||+||+||||||+||++|++||+|||||||+|.|||+|+++|+||..|+++++++||..|+++++.|+++|++-.
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r~P~~Il~~AV-- 78 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKAL-- 78 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHTTTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCSSTTTHHHHHT--
T ss_pred CEEcCCCCchHHHHHHHHHHHhCCCEEEEEeCeeeEEcCchHhhEhheeccCcccccCCccccccccCCHHHHHHHHH--
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred EcCCCCcc--hhhHHHHHHHHh
Q psy9430 89 IDGRGHLL--GRLASIVAKTIL 108 (255)
Q Consensus 89 IDA~g~~L--GRLAs~VAk~Ll 108 (255)
+|++. ++|....-+.|.
T Consensus 79 ---rGMLP~K~~lGr~~l~rLk 97 (178)
T 3jyw_M 79 ---RGMVSHKTARGKAALERLK 97 (178)
T ss_dssp ---TSSSCSSSHHHHHHHHHCC
T ss_pred ---HHHhhcccHhHHHHHhCCe
Confidence 57776 667666666665
No 21
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.88 E-value=4e-24 Score=178.92 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=69.2
Q ss_pred CCcccEEEeCCCCchhhHHHHHHHHHc------------CCCEEEEEeccceeeccchhhhhhhhHHHhhhhhcc-CC--
Q psy9430 4 ISRKPILIDGRGHLLGRLASIVAKTIL------------NGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNV-NP-- 68 (255)
Q Consensus 4 ~~~~w~viDa~~~~lGrlas~iA~~L~------------~Gd~vvvina~~i~~tG~k~~~k~~~~~~~~kr~~~-np-- 68 (255)
++|+|+||||+|++||||||+||++|+ |||+|||||||+|.|||+|+++|.||.- +.+ ++
T Consensus 14 ~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~h-----tg~pGg~k 88 (148)
T 2ftc_H 14 FARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSH-----TGYPGGFR 88 (148)
T ss_pred ccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeeee-----eCCcCCce
Confidence 489999999999999999999999999 9999999999999999999999999872 111 22
Q ss_pred --CCCCCcccCCCccccceeE
Q psy9430 69 --ARGPFHYRAPARIFWKTPI 87 (255)
Q Consensus 69 --~~Gp~t~raPs~If~r~w~ 87 (255)
..|+.+++.|++++++...
T Consensus 89 ~~~~~~~~~r~P~~ii~~aVr 109 (148)
T 2ftc_H 89 QVTAAQLHLRDPVAIVKLAIY 109 (148)
T ss_pred eccHHHHhhcCHHHHHHHHHH
Confidence 3488999999999998653
No 22
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=99.87 E-value=2.5e-24 Score=179.01 Aligned_cols=81 Identities=23% Similarity=0.381 Sum_probs=68.4
Q ss_pred CCCcccEEEeCCCCchhhHHHHHHHHHc------------CCCEEEEEeccceeeccchhhhhhhhHH--HhhhhhccCC
Q psy9430 3 GISRKPILIDGRGHLLGRLASIVAKTIL------------NGNRVVVVRAELLNISGNFFRNKLKYLA--FLNKRCNVNP 68 (255)
Q Consensus 3 ~~~~~w~viDa~~~~lGrlas~iA~~L~------------~Gd~vvvina~~i~~tG~k~~~k~~~~~--~~~kr~~~np 68 (255)
-++|+|+||||+|++||||||+||++|+ |||+|||||||+|.|||+|+++|.||.. |..-...+++
T Consensus 10 ~~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~htgypGg~k~~~~ 89 (142)
T 3r8s_J 10 TVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATF 89 (142)
T ss_dssp TCCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCEECSSTTCEECCBH
T ss_pred hccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEEecCcCCCccccCH
Confidence 3789999999999999999999999999 9999999999999999999999999863 3332222222
Q ss_pred CCCCCcccCCCccccce
Q psy9430 69 ARGPFHYRAPARIFWKT 85 (255)
Q Consensus 69 ~~Gp~t~raPs~If~r~ 85 (255)
++.+++.|+++|++.
T Consensus 90 --~~~~~r~P~~ii~~a 104 (142)
T 3r8s_J 90 --EEMIARRPERVIEIA 104 (142)
T ss_dssp --HHHHHHCSHHHHHHH
T ss_pred --HHHHhhCHHHHHHHH
Confidence 566778899988864
No 23
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=99.85 E-value=4.5e-23 Score=176.29 Aligned_cols=77 Identities=25% Similarity=0.408 Sum_probs=67.0
Q ss_pred CCcccEEEeCCCCchhhHHHHHHHHHc------------CCCEEEEEeccceeeccchhhhhhhhH--HH---hhhhhcc
Q psy9430 4 ISRKPILIDGRGHLLGRLASIVAKTIL------------NGNRVVVVRAELLNISGNFFRNKLKYL--AF---LNKRCNV 66 (255)
Q Consensus 4 ~~~~w~viDa~~~~lGrlas~iA~~L~------------~Gd~vvvina~~i~~tG~k~~~k~~~~--~~---~~kr~~~ 66 (255)
++|+|+||||+|++||||||+||++|+ |||+|||||||+|.|||+|+++|.||. .| ++.+
T Consensus 37 ~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~K~yy~htgypGGlk~~--- 113 (174)
T 2zjr_G 37 DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTE--- 113 (174)
T ss_dssp SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEECCSSCSSCCEE---
T ss_pred ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhceEEEEecCcCCCcccc---
Confidence 789999999999999999999999999 999999999999999999999999985 11 2111
Q ss_pred CCCCCCCcccCCCccccce
Q psy9430 67 NPARGPFHYRAPARIFWKT 85 (255)
Q Consensus 67 np~~Gp~t~raPs~If~r~ 85 (255)
..++.+++.|++++++.
T Consensus 114 --~~~~~~~r~P~~Ii~~A 130 (174)
T 2zjr_G 114 --TAREALSKHPERVIEHA 130 (174)
T ss_dssp --EESTTTTSCHHHHHHHH
T ss_pred --cHHHHhhcChHHHHHHH
Confidence 23778889999988874
No 24
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=99.84 E-value=3.2e-23 Score=175.53 Aligned_cols=79 Identities=28% Similarity=0.367 Sum_probs=67.1
Q ss_pred CCCcccEEEeCCCCchhhHHHHHHHHHc------------CCCEEEEEeccceeeccchhhhhhhhHH-----Hhhhhhc
Q psy9430 3 GISRKPILIDGRGHLLGRLASIVAKTIL------------NGNRVVVVRAELLNISGNFFRNKLKYLA-----FLNKRCN 65 (255)
Q Consensus 3 ~~~~~w~viDa~~~~lGrlas~iA~~L~------------~Gd~vvvina~~i~~tG~k~~~k~~~~~-----~~~kr~~ 65 (255)
-++|+|+||||+|++||||||+||++|+ |||+|||||||+|.|||+|+++|.||.- .++.+
T Consensus 31 ~~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~yy~htgypGglk~~-- 108 (163)
T 3f1f_N 31 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKI-- 108 (163)
T ss_dssp CCCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECCBCSSTTCBCCE--
T ss_pred cccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhheeeEEecCcCCcceee--
Confidence 3789999999999999999999999999 9999999999999999999999999851 11111
Q ss_pred cCCCCCCCcccCCCcccccee
Q psy9430 66 VNPARGPFHYRAPARIFWKTP 86 (255)
Q Consensus 66 ~np~~Gp~t~raPs~If~r~w 86 (255)
..|+.+++.|+++|++..
T Consensus 109 ---t~~~~~~r~P~~Ii~~AV 126 (163)
T 3f1f_N 109 ---PLEKMLATHPERVLEHAV 126 (163)
T ss_dssp ---EHHHHHHSSCHHHHHHHH
T ss_pred ---ehHHhhhcCHHHHHHHHH
Confidence 136778899999998743
No 25
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=99.84 E-value=9.5e-22 Score=163.18 Aligned_cols=78 Identities=28% Similarity=0.419 Sum_probs=66.8
Q ss_pred CCcccEEEeCCCCchhhHHHHHHHHHc------------CCCEEEEEeccceeeccchhhhhhhhHH--H---hhhhhcc
Q psy9430 4 ISRKPILIDGRGHLLGRLASIVAKTIL------------NGNRVVVVRAELLNISGNFFRNKLKYLA--F---LNKRCNV 66 (255)
Q Consensus 4 ~~~~w~viDa~~~~lGrlas~iA~~L~------------~Gd~vvvina~~i~~tG~k~~~k~~~~~--~---~~kr~~~ 66 (255)
++|+|+||||+|++||||||+||++|+ |||+|||||||+|.|||+|+++|.||.- + ++.+
T Consensus 9 ~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~htgypGglk~~--- 85 (140)
T 3v2d_N 9 VEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKI--- 85 (140)
T ss_dssp CCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEEECSSTTCEEEE---
T ss_pred ccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEEecccCCcceec---
Confidence 689999999999999999999999999 9999999999999999999999999851 1 2222
Q ss_pred CCCCCCCcccCCCcccccee
Q psy9430 67 NPARGPFHYRAPARIFWKTP 86 (255)
Q Consensus 67 np~~Gp~t~raPs~If~r~w 86 (255)
..|+.+++.|+++|++..
T Consensus 86 --~~~~~~~r~P~~ii~~aV 103 (140)
T 3v2d_N 86 --PLEKMLATHPERVLEHAV 103 (140)
T ss_dssp --EHHHHHHHCTHHHHHHHH
T ss_pred --cHHHhhhhCHHHHHHHHH
Confidence 236777888999988743
No 26
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.82 E-value=4.4e-22 Score=177.54 Aligned_cols=77 Identities=31% Similarity=0.393 Sum_probs=66.5
Q ss_pred CCcccEEEeCCCCchhhHHHHHHHHHc------------CCCEEEEEeccceeeccchhhhhhhhHHHhhhhhccCCC--
Q psy9430 4 ISRKPILIDGRGHLLGRLASIVAKTIL------------NGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA-- 69 (255)
Q Consensus 4 ~~~~w~viDa~~~~lGrlas~iA~~L~------------~Gd~vvvina~~i~~tG~k~~~k~~~~~~~~kr~~~np~-- 69 (255)
++|+|+||||+|++||||||+||++|+ |||+|||||||+|.|||+|+++|.|| +.+.+|.
T Consensus 110 ~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD~VVVINAeKI~lTG~K~~~K~Y~------rHsgyPGGl 183 (250)
T 3bbo_L 110 TDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYR------RHSGRPGGL 183 (250)
T ss_dssp --CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSCCCEESCCSSCCCCSGGGGTCCCB------CCCSSSSCC
T ss_pred ccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCCEEEEEecceEEecCChhhceEEE------EecCcCCCc
Confidence 689999999999999999999999999 99999999999999999999999985 4444564
Q ss_pred ----CCCCcccCCCcccccee
Q psy9430 70 ----RGPFHYRAPARIFWKTP 86 (255)
Q Consensus 70 ----~Gp~t~raPs~If~r~w 86 (255)
.|+.+++.|++++++..
T Consensus 184 K~~t~~~l~~r~PerIi~kAV 204 (250)
T 3bbo_L 184 KEETFDQLQKRIPERIIEHAV 204 (250)
T ss_dssp CBCCHHHHTTSCTTHHHHHHH
T ss_pred ccccHHHhhhcChHHHHHHHH
Confidence 25678899999998743
No 27
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=64.79 E-value=5.6 Score=29.09 Aligned_cols=29 Identities=3% Similarity=0.171 Sum_probs=25.7
Q ss_pred CCCeeehhhhhhhhCCchHHHHHHHHHHH
Q psy9430 212 GRSYCSVGRISHEVGWKYKTIVRHLERKR 240 (255)
Q Consensus 212 ~~k~~~lgel~~~~Gwk~~~~~~~le~~r 240 (255)
.+|-+.|.|||.++|-+-+++++++++--
T Consensus 18 ~~Kvv~LedLA~~F~l~t~~~i~RI~~Le 46 (72)
T 1wi9_A 18 KSKVVLLEDLAFQMGLRTQDAINRIQDLL 46 (72)
T ss_dssp HCSEECHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HcCeeeHHHHHHHhCCChHHHHHHHHHHH
Confidence 46899999999999999999999987643
No 28
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=56.63 E-value=33 Score=27.43 Aligned_cols=68 Identities=9% Similarity=0.104 Sum_probs=39.9
Q ss_pred hHHHHHHHHHc--CCCEEEEEeccc--------eeeccchhhhhhhhHHHhhhhhccCCCCCCCcccCCCccccceeEEE
Q psy9430 20 RLASIVAKTIL--NGNRVVVVRAEL--------LNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTPILI 89 (255)
Q Consensus 20 rlas~iA~~L~--~Gd~vvvina~~--------i~~tG~k~~~k~~~~~~~~kr~~~np~~Gp~t~raPs~If~r~w~vI 89 (255)
.|+..+++.|. .|+-|+|++-.+ |..||+-.++-.---..+.+.+. ..|...+ .-...-...|+++
T Consensus 5 ~l~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIaTg~S~rqv~Aiad~v~~~lk---~~g~~~~-~~EG~~~~~WvLl 80 (130)
T 2id1_A 5 EISKLAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLK---EAGVDIV-GSEGHESGEWVLV 80 (130)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEGGGTCSSCSEEEEEECSSHHHHHHHHHHHHHHHH---HTTCCCC-BCCSTTTSSEEEE
T ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHH---HcCCcCc-cccCCCCCCEEEE
Confidence 46677777777 778888888776 66778776664433333333332 1232211 1112234689999
Q ss_pred cC
Q psy9430 90 DG 91 (255)
Q Consensus 90 DA 91 (255)
|.
T Consensus 81 D~ 82 (130)
T 2id1_A 81 DA 82 (130)
T ss_dssp EE
T ss_pred ec
Confidence 98
No 29
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=54.49 E-value=6.5 Score=30.42 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=24.3
Q ss_pred cceeEEEcCCCCcchhhHHHHHHHHhCCCEEEEEe
Q psy9430 83 WKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVR 117 (255)
Q Consensus 83 ~r~w~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVN 117 (255)
...|+=+-+ .|++|..++++|..||.|.|.-
T Consensus 51 ~t~fi~vv~----wgk~AE~~~~yl~KG~~V~VeG 81 (108)
T 3koj_A 51 APARLKVVG----WGAVAQELQDRCRLNDEVVLEG 81 (108)
T ss_dssp CCEEEEEEE----ETHHHHHHHHHCCTTCEEEEEE
T ss_pred CcEEEEEEE----EhHHHHHHHHhCCCCCEEEEEE
Confidence 345665544 5789999999999999998864
No 30
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=49.28 E-value=40 Score=26.71 Aligned_cols=68 Identities=19% Similarity=0.075 Sum_probs=39.4
Q ss_pred hHHHHHHHHHc--CCCEEEEEeccc--------eeeccchhhhhhhhHHHhhhhhccCCCCCCCcccCCCccccceeEEE
Q psy9430 20 RLASIVAKTIL--NGNRVVVVRAEL--------LNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTPILI 89 (255)
Q Consensus 20 rlas~iA~~L~--~Gd~vvvina~~--------i~~tG~k~~~k~~~~~~~~kr~~~np~~Gp~t~raPs~If~r~w~vI 89 (255)
.|+..+|+.|. .|+-|+|++-.+ |..||+-.++-.---..+...+.- .|...++ -...-...|+++
T Consensus 5 ~l~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIatg~S~rqv~Aiad~v~~~lk~---~g~~~~~-~EG~~~~~WvLl 80 (125)
T 2o5a_A 5 ELLQLAVNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQE---QGIEIKR-LEGYEQARWVLI 80 (125)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECBTTBC--CEEEEEEESSHHHHHHHHHHHHHHHHH---TTCCCCE-EESTTTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHH---cCCcccc-ccCCCCCCEEEE
Confidence 46777777777 778888888776 667887766644333333333321 1222111 111224589999
Q ss_pred cC
Q psy9430 90 DG 91 (255)
Q Consensus 90 DA 91 (255)
|.
T Consensus 81 D~ 82 (125)
T 2o5a_A 81 DL 82 (125)
T ss_dssp EC
T ss_pred eC
Confidence 98
No 31
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=44.18 E-value=39 Score=27.70 Aligned_cols=44 Identities=25% Similarity=0.450 Sum_probs=31.0
Q ss_pred CCCcccCCCccccceeEEEcCCCCcchhhHHHHHHHHh-CCCEEEEEe
Q psy9430 71 GPFHYRAPARIFWKTPILIDGRGHLLGRLASIVAKTIL-NGNRVVVVR 117 (255)
Q Consensus 71 Gp~t~raPs~If~r~w~vIDA~g~~LGRLAs~VAk~Ll-~Gd~VVVVN 117 (255)
||+++..+...+..++++|=+-. |-+...+|+.|. .|.+|+++.
T Consensus 1 ~m~~~~~~~~~l~~k~vlITGas---~gIG~~ia~~l~~~G~~V~~~~ 45 (247)
T 3i1j_A 1 GMFDYSAHPELLKGRVILVTGAA---RGIGAAAARAYAAHGASVVLLG 45 (247)
T ss_dssp CCCCCCCCTTTTTTCEEEESSTT---SHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCCCccCCCCEEEEeCCC---ChHHHHHHHHHHHCCCEEEEEe
Confidence 56666666667777888887655 445567777775 899988764
No 32
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=40.36 E-value=16 Score=28.86 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=23.4
Q ss_pred eeEEEcCCCCcchhhHHHHHHHHhCCCEEEEEe
Q psy9430 85 TPILIDGRGHLLGRLASIVAKTILNGNRVVVVR 117 (255)
Q Consensus 85 ~w~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVN 117 (255)
.|+=|-| .|++|..++++|..||.|.|.-
T Consensus 63 ~w~~v~~----wg~~Ae~~~~~l~KG~~V~VeG 91 (128)
T 4dam_A 63 NFFTVWA----NRQLATNASGSLAVGDPVVVQG 91 (128)
T ss_dssp EEEEEEE----EHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEEEEE----EcHHHHHHHHhcCCCCEEEEEE
Confidence 4655544 5789999999999999999864
No 33
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=40.27 E-value=19 Score=25.51 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=22.3
Q ss_pred CCCCeeehhhhhhhhCCchHHHHHHHHH
Q psy9430 211 PGRSYCSVGRISHEVGWKYKTIVRHLER 238 (255)
Q Consensus 211 ~~~k~~~lgel~~~~Gwk~~~~~~~le~ 238 (255)
+-+.=.|.||+|-++||-....-+.||.
T Consensus 14 s~~QGMTaGEVAA~f~w~Le~ar~aLeq 41 (68)
T 3i71_A 14 SVRQGMTAGEVAAHFGWPLEKARNALEQ 41 (68)
T ss_dssp HCTTCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHhccccHHHHHHHhCCcHHHHHHHHHH
Confidence 3456789999999999987777666664
No 34
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=39.53 E-value=16 Score=28.21 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=20.2
Q ss_pred chhhHHHHHHHHHcCCCEEEEEe
Q psy9430 17 LLGRLASIVAKTILNGNRVVVVR 39 (255)
Q Consensus 17 ~lGrlas~iA~~L~~Gd~vvvin 39 (255)
..|++|..+++.|..||.|.|--
T Consensus 59 ~wgk~AE~~~~yl~KG~~V~VeG 81 (108)
T 3koj_A 59 GWGAVAQELQDRCRLNDEVVLEG 81 (108)
T ss_dssp EETHHHHHHHHHCCTTCEEEEEE
T ss_pred EEhHHHHHHHHhCCCCCEEEEEE
Confidence 46899999999999999998854
No 35
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=37.78 E-value=17 Score=27.67 Aligned_cols=30 Identities=17% Similarity=-0.065 Sum_probs=23.2
Q ss_pred ceeEEEcCCCCcchhhHHHHHHHHhCCCEEEEEe
Q psy9430 84 KTPILIDGRGHLLGRLASIVAKTILNGNRVVVVR 117 (255)
Q Consensus 84 r~w~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVN 117 (255)
..|+=+-+ .|++|..+++.|..||.|.|.-
T Consensus 49 t~~~~v~~----wg~~Ae~~~~~l~KG~~V~V~G 78 (116)
T 3vdy_A 49 ADYVNCTL----WRKTAENTALYCQKGSLVGVSG 78 (116)
T ss_dssp EEEEEEEE----EHHHHHHHHHHCCTTCEEEEEE
T ss_pred cEEEEEEE----ECHHHHHHHHhCCCCCEEEEEE
Confidence 45654433 5889999999999999998864
No 36
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=34.66 E-value=21 Score=27.54 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=23.5
Q ss_pred ceeEEEcCCCCcch-hhHHHHHHHHhCCCEEEEEe
Q psy9430 84 KTPILIDGRGHLLG-RLASIVAKTILNGNRVVVVR 117 (255)
Q Consensus 84 r~w~vIDA~g~~LG-RLAs~VAk~Ll~Gd~VVVVN 117 (255)
-.|+=+-| .| ++|..++++|..|+.|.|.-
T Consensus 53 t~~~~v~~----wg~~~Ae~~~~~l~KG~~V~V~G 83 (124)
T 3ulp_A 53 TDWHRIVV----YDQNIVDLIDKYLRKGRRVYVQG 83 (124)
T ss_dssp EEEEEEEE----CCHHHHHHHHHHCCTTCEEEEEE
T ss_pred cEEEEEEE----EEchHHHHHHhhcCCCCEEEEEE
Confidence 45655544 46 79999999999999998864
No 37
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=34.10 E-value=32 Score=21.53 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=20.8
Q ss_pred eehhhhhhhhCCchHHHHHHHHHH
Q psy9430 216 CSVGRISHEVGWKYKTIVRHLERK 239 (255)
Q Consensus 216 ~~lgel~~~~Gwk~~~~~~~le~~ 239 (255)
+++-+||+++|=..+++++.|.+.
T Consensus 3 ~rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 3 VTIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp ECTTHHHHHHSSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHc
Confidence 567899999999999999999753
No 38
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=33.97 E-value=23 Score=27.92 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.4
Q ss_pred chhhHHHHHHHHhCCCEEEEEe
Q psy9430 96 LGRLASIVAKTILNGNRVVVVR 117 (255)
Q Consensus 96 LGRLAs~VAk~Ll~Gd~VVVVN 117 (255)
.|++|..+++.|..||.|.|.-
T Consensus 56 wg~~Ae~~~~~l~KG~~V~V~G 77 (134)
T 2vw9_A 56 FGRTAEIANQYLSKGSSVLIEG 77 (134)
T ss_dssp EHHHHHHHHHHCCTTCEEEEEE
T ss_pred EcHHHHHHHHhCCCCCEEEEEE
Confidence 5789999999999999988864
No 39
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=33.95 E-value=22 Score=28.82 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=23.6
Q ss_pred ceeEEEcCCCCcchhhHHHHHHHHhCCCEEEEEe
Q psy9430 84 KTPILIDGRGHLLGRLASIVAKTILNGNRVVVVR 117 (255)
Q Consensus 84 r~w~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVN 117 (255)
..|+=|-| .|++|..++++|..|+.|.|.-
T Consensus 62 t~~~~v~~----wg~~Ae~~~~~l~KG~~V~VeG 91 (153)
T 1z9f_A 62 TDFFRIVT----FGRLAEFARTYLTKGRLVLVEG 91 (153)
T ss_dssp EEEEEEEE----EHHHHHHHHHHCCTTCEEEEEE
T ss_pred eEEEEEEE----ECHHHHHHHhhCCCCCEEEEEE
Confidence 35655544 4789999999999999998864
No 40
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=31.62 E-value=60 Score=24.91 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=25.8
Q ss_pred cCCCccccceeEEEcCCCCcchhhHHHHHHHHh-CCCEEEEEee
Q psy9430 76 RAPARIFWKTPILIDGRGHLLGRLASIVAKTIL-NGNRVVVVRA 118 (255)
Q Consensus 76 raPs~If~r~w~vIDA~g~~LGRLAs~VAk~Ll-~Gd~VVVVNa 118 (255)
..|......+++|+ | .|+++..+|..|. .|..|+++.-
T Consensus 12 ~~~~~~~~~~v~Ii---G--~G~iG~~la~~L~~~g~~V~vid~ 50 (155)
T 2g1u_A 12 HMSKKQKSKYIVIF---G--CGRLGSLIANLASSSGHSVVVVDK 50 (155)
T ss_dssp -----CCCCEEEEE---C--CSHHHHHHHHHHHHTTCEEEEEES
T ss_pred hhhcccCCCcEEEE---C--CCHHHHHHHHHHHhCCCeEEEEEC
Confidence 44555666778888 4 3889999999886 7888988853
No 41
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=31.20 E-value=26 Score=28.77 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=22.9
Q ss_pred eeEEEcCCCCcchhhHHHHHHHHhCCCEEEEEe
Q psy9430 85 TPILIDGRGHLLGRLASIVAKTILNGNRVVVVR 117 (255)
Q Consensus 85 ~w~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVN 117 (255)
.|+=|-+ .|++|..++++|..|+.|+|.-
T Consensus 53 ~~~~v~~----wg~~Ae~~~~~l~KG~~V~VeG 81 (168)
T 3afp_A 53 LFLRCNI----WREAAENVAESLTRGARVIVTG 81 (168)
T ss_dssp EEEEEEE----EHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEEEEE----ehHHHHHHHHhCCCCCEEEEEE
Confidence 4554433 4789999999999999999874
No 42
>2b1y_A Hypothetical protein ATU1913; NEW fold, structural genomics, PSI, PR structure initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: b.156.1.1
Probab=30.79 E-value=20 Score=27.86 Aligned_cols=61 Identities=16% Similarity=0.442 Sum_probs=38.0
Q ss_pred HcCCCEEEEEeccceeeccchhhhhhhhHHHhhhh---hccC-CCCCCCcccCCCccccceeEEEcCCCC
Q psy9430 29 ILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKR---CNVN-PARGPFHYRAPARIFWKTPILIDGRGH 94 (255)
Q Consensus 29 L~~Gd~vvvina~~i~~tG~k~~~k~~~~~~~~kr---~~~n-p~~Gp~t~raPs~If~r~w~vIDA~g~ 94 (255)
|.-||-|+|-.+....| .-+.+. -|..|-+-+ +..+ -+++|....-|..-.|- ++||+.|+
T Consensus 16 l~~Gd~V~V~cs~~~nV--rLmd~~-Nf~~~~~g~~~~~~GG~~~~~P~~itVP~sG~W~--vvID~~g~ 80 (104)
T 2b1y_A 16 LRAGTTLEISLSSVNNV--RLMTGA-NFQRFTELLDFKYLGGVAKKSPIRIAVPETMHWH--LIIDAEGH 80 (104)
T ss_dssp CCTTCCCCCCCSSSCCC--CCCCHH-HHHHHHHHTTCCCSCCCCCSSSCCCCCCSSSCCC--CCCCCTTS
T ss_pred ccCCCEEEEEeCCceeE--EEcCch-hhhhhhccCceeEeccccccCCEEEECCCCceEE--EEEecCCc
Confidence 34688888888777777 233333 344444443 2222 24678888888877665 68899775
No 43
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=30.61 E-value=27 Score=27.84 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=23.3
Q ss_pred ceeEEEcCCCCcchhhHHHHHHHHhCCCEEEEEe
Q psy9430 84 KTPILIDGRGHLLGRLASIVAKTILNGNRVVVVR 117 (255)
Q Consensus 84 r~w~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVN 117 (255)
..|+=|-+ .|++|..+++.|..||.|.|.-
T Consensus 52 t~~~~v~~----wg~~Ae~~~~~l~KG~~V~V~G 81 (145)
T 1qvc_A 52 TEWHRVVL----FGKLAEVASEYLRKGSQVYIEG 81 (145)
T ss_dssp CEEEEEEE----ETHHHHHHHHHCCTTCEEEEEE
T ss_pred cEEEEEEE----ehHHHHHHHHhcCCCCEEEEEE
Confidence 34655544 4679999999999999998864
No 44
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=30.37 E-value=71 Score=24.15 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=28.7
Q ss_pred CCccccceeEEEcCCCCcchhhHHHHHHHHh-CCCEEEEEeec
Q psy9430 78 PARIFWKTPILIDGRGHLLGRLASIVAKTIL-NGNRVVVVRAE 119 (255)
Q Consensus 78 Ps~If~r~w~vIDA~g~~LGRLAs~VAk~Ll-~Gd~VVVVNae 119 (255)
|+..+...++|+ | .|+++..+|+.|. .|..|++|..+
T Consensus 2 ~~~~~~~~viIi---G--~G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 2 NAVDICNHALLV---G--YGRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CCCCCCSCEEEE---C--CSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CcccCCCCEEEE---C--cCHHHHHHHHHHHHCCCCEEEEECC
Confidence 455666677777 3 3999999999997 79899988754
No 45
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=30.10 E-value=25 Score=29.23 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=22.7
Q ss_pred ceeEEEcCCCCcchhhHHHHHHHHhCCCEEEEE
Q psy9430 84 KTPILIDGRGHLLGRLASIVAKTILNGNRVVVV 116 (255)
Q Consensus 84 r~w~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVV 116 (255)
..|+=|-+ .|++|..++++|..|+.|.|.
T Consensus 53 t~~i~vv~----wg~~Ae~~~~~l~KG~~V~Ve 81 (178)
T 1eqq_A 53 TEWHRVVL----FGKLAEVASEYLRKGSQVYIE 81 (178)
T ss_dssp EEEEEEEE----CHHHHHHHHHHCCTTCEEEEC
T ss_pred cEEEEEEE----ccHHHHHHHHhcCCCCEEEEE
Confidence 34655544 578999999999999998875
No 46
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=29.54 E-value=30 Score=26.20 Aligned_cols=23 Identities=26% Similarity=0.101 Sum_probs=19.8
Q ss_pred chhhHHHHHHHHHcCCCEEEEEe
Q psy9430 17 LLGRLASIVAKTILNGNRVVVVR 39 (255)
Q Consensus 17 ~lGrlas~iA~~L~~Gd~vvvin 39 (255)
..|++|..+++.|..||.|.|.-
T Consensus 56 ~wg~~Ae~~~~~l~KG~~V~V~G 78 (116)
T 3vdy_A 56 LWRKTAENTALYCQKGSLVGVSG 78 (116)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EECHHHHHHHHhCCCCCEEEEEE
Confidence 46899999999999999988753
No 47
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=29.53 E-value=30 Score=27.22 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.7
Q ss_pred chhhHHHHHHHHHcCCCEEEEEec
Q psy9430 17 LLGRLASIVAKTILNGNRVVVVRA 40 (255)
Q Consensus 17 ~lGrlas~iA~~L~~Gd~vvvina 40 (255)
..|++|..+++.|..||.|+|.-.
T Consensus 69 ~wg~~Ae~~~~~l~KG~~V~VeGr 92 (128)
T 4dam_A 69 ANRQLATNASGSLAVGDPVVVQGR 92 (128)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred EEcHHHHHHHHhcCCCCEEEEEEE
Confidence 468999999999999999988643
No 48
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=28.71 E-value=30 Score=26.97 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=22.7
Q ss_pred ceeEEEcCCCCcch-hhHHHHHHHHhCCCEEEEEe
Q psy9430 84 KTPILIDGRGHLLG-RLASIVAKTILNGNRVVVVR 117 (255)
Q Consensus 84 r~w~vIDA~g~~LG-RLAs~VAk~Ll~Gd~VVVVN 117 (255)
-.|+=|-| .| ++|..++++|..|+.|.|.-
T Consensus 66 t~w~~v~~----wg~~~Ae~~~~~l~KG~~V~V~G 96 (132)
T 3ull_A 66 TTWHRISV----FRPGLRDVAYQYVKKGSRIYLEG 96 (132)
T ss_dssp EEEEEEEE----CSTTHHHHHHHHCCTTCEEEEEE
T ss_pred eEEEEEEE----EchHHHHHHHhhCCCCCEEEEEE
Confidence 34654444 45 59999999999999998864
No 49
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=28.58 E-value=30 Score=28.07 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=19.6
Q ss_pred chhhHHHHHHHHhCCCEEEEEe
Q psy9430 96 LGRLASIVAKTILNGNRVVVVR 117 (255)
Q Consensus 96 LGRLAs~VAk~Ll~Gd~VVVVN 117 (255)
.|++|..++++|..|+.|.|.-
T Consensus 63 wg~~Ae~~~~~l~KG~~V~VeG 84 (158)
T 3tqy_A 63 FNRLAEIVGEYLRKGSKIYIEG 84 (158)
T ss_dssp ETHHHHHHHHHCCTTCEEEEEE
T ss_pred EhHHHHHHHhhcCCCCEEEEEE
Confidence 5789999999999999998864
No 50
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=28.13 E-value=41 Score=27.59 Aligned_cols=33 Identities=15% Similarity=0.018 Sum_probs=28.2
Q ss_pred ccceeEEEcCCCCcchhhHHHHHHHHhCCCEEEEEe
Q psy9430 82 FWKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVR 117 (255)
Q Consensus 82 f~r~w~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVN 117 (255)
-...|+-|=+-| |.||..|.+.|..|+.|+|.-
T Consensus 83 ~~tdf~~V~vfG---g~lAE~i~~ylkkG~rVlVeG 115 (148)
T 3stb_C 83 PDKDFHTVRVFD---SDYSSRVKEQLRDGEWFLVTG 115 (148)
T ss_dssp CSEEEEEEEECS---HHHHHHHHHHCCTTCEEEEEE
T ss_pred CccceEEEEEEC---ChHHHHHHHHhcCCCEEEEEE
Confidence 456788887777 899999999999999988864
No 51
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=26.08 E-value=35 Score=27.65 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=24.2
Q ss_pred cceeEEEcCCCCcchhh-HHHHHHHHhCCCEEEEEe
Q psy9430 83 WKTPILIDGRGHLLGRL-ASIVAKTILNGNRVVVVR 117 (255)
Q Consensus 83 ~r~w~vIDA~g~~LGRL-As~VAk~Ll~Gd~VVVVN 117 (255)
...|+=|-+ .|++ |..++++|..|+.|.|.-
T Consensus 50 ~t~w~~vv~----wgk~lAe~~~~yl~KG~~V~VeG 81 (148)
T 3k7u_C 50 EKDHHTIRC----FGELFSAEVKQKVKEGNVVCVNG 81 (148)
T ss_dssp CEEEEEEEE----ESHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccEEEEEEE----ECcHHHHHHHhhCCCCCEEEEEE
Confidence 346776655 4676 999999999999998864
No 52
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=25.93 E-value=37 Score=26.63 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.3
Q ss_pred chhhHHHHHHHHHcCCCEEEEE
Q psy9430 17 LLGRLASIVAKTILNGNRVVVV 38 (255)
Q Consensus 17 ~lGrlas~iA~~L~~Gd~vvvi 38 (255)
..|++|..+++.|..||.|.|.
T Consensus 55 ~wg~~Ae~~~~~l~KG~~V~V~ 76 (134)
T 2vw9_A 55 LFGRTAEIANQYLSKGSSVLIE 76 (134)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEE
T ss_pred EEcHHHHHHHHhCCCCCEEEEE
Confidence 4689999999999999998775
No 53
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=25.08 E-value=64 Score=26.41 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=26.2
Q ss_pred cccEEEeCCCCchhhHHHHHHHHHcCCCEEEEEe
Q psy9430 6 RKPILIDGRGHLLGRLASIVAKTILNGNRVVVVR 39 (255)
Q Consensus 6 ~~w~viDa~~~~lGrlas~iA~~L~~Gd~vvvin 39 (255)
.+|+-|=+=| |.||..+.+.|..|+.|+|.-
T Consensus 85 tdf~~V~vfG---g~lAE~i~~ylkkG~rVlVeG 115 (148)
T 3stb_C 85 KDFHTVRVFD---SDYSSRVKEQLRDGEWFLVTG 115 (148)
T ss_dssp EEEEEEEECS---HHHHHHHHHHCCTTCEEEEEE
T ss_pred cceEEEEEEC---ChHHHHHHHHhcCCCEEEEEE
Confidence 4677777766 899999999999999998854
No 54
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=25.07 E-value=36 Score=26.17 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=19.8
Q ss_pred chh-hHHHHHHHHHcCCCEEEEEe
Q psy9430 17 LLG-RLASIVAKTILNGNRVVVVR 39 (255)
Q Consensus 17 ~lG-rlas~iA~~L~~Gd~vvvin 39 (255)
..| ++|..+++.|..||.|.|.-
T Consensus 60 ~wg~~~Ae~~~~~l~KG~~V~V~G 83 (124)
T 3ulp_A 60 VYDQNIVDLIDKYLRKGRRVYVQG 83 (124)
T ss_dssp ECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEchHHHHHHhhcCCCCEEEEEE
Confidence 367 89999999999999988753
No 55
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=24.61 E-value=39 Score=28.80 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=23.2
Q ss_pred ceeEEEcCCCCcchhhHHHHHHHHhCCCEEEEEe
Q psy9430 84 KTPILIDGRGHLLGRLASIVAKTILNGNRVVVVR 117 (255)
Q Consensus 84 r~w~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVN 117 (255)
..|+=|-+ .|+||..++++|..|+.|+|.=
T Consensus 52 T~wi~Vva----wgklAE~v~~~L~KG~~V~VeG 81 (199)
T 3eiv_A 52 SLFLTCSV----WRQAAENVAESLQRGMRVIVQG 81 (199)
T ss_dssp CEEEEEEE----ETHHHHHHHHHCCTTCEEEEEE
T ss_pred cEEEEEEE----EhHHHHHHHHhcCCCCEEEEEE
Confidence 34554444 4789999999999999999864
No 56
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=24.60 E-value=84 Score=26.43 Aligned_cols=47 Identities=19% Similarity=0.144 Sum_probs=23.7
Q ss_pred CCCCCCCcccCCCccccceeEEEcCCCCcchhhHHHHHHHHh-CCCEEEEE
Q psy9430 67 NPARGPFHYRAPARIFWKTPILIDGRGHLLGRLASIVAKTIL-NGNRVVVV 116 (255)
Q Consensus 67 np~~Gp~t~raPs~If~r~w~vIDA~g~~LGRLAs~VAk~Ll-~Gd~VVVV 116 (255)
++.+-|+++..|...+..+.++|=+-. |-+...+|+.|. .|..|+++
T Consensus 4 ~~~~~~~~~~~~~~~l~~k~~lVTGas---~gIG~~ia~~l~~~G~~V~~~ 51 (267)
T 1vl8_A 4 DKIHHHHHHMKEVFDLRGRVALVTGGS---RGLGFGIAQGLAEAGCSVVVA 51 (267)
T ss_dssp -------------CCCTTCEEEEETTT---SHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCCCCCCCCcCCCCCEEEEECCC---CHHHHHHHHHHHHCCCEEEEE
Confidence 345667777777777777766666544 345667777665 89998876
No 57
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=24.59 E-value=1.4e+02 Score=28.57 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=28.3
Q ss_pred cEEEeCCCCchhhHHHHH-HHHHcCCCEEEEEecc
Q psy9430 8 PILIDGRGHLLGRLASIV-AKTILNGNRVVVVRAE 41 (255)
Q Consensus 8 w~viDa~~~~lGrlas~i-A~~L~~Gd~vvvina~ 41 (255)
=+++|+-+-.-|..+..+ ...|-.|=.|+++|++
T Consensus 218 kIvvD~~nGag~~~~~~i~l~~L~~G~~v~~ln~~ 252 (544)
T 2dka_A 218 DITIDAANGVGAPKIQELLEKYLHKEISFTVVNGD 252 (544)
T ss_dssp EEEEECTTSTHHHHHHHHHHHHSTTTEEEEEESCC
T ss_pred EEEEECCCcHHHHHHHHHHHHHhcCCceEEEEcCc
Confidence 389999999999998888 8887435589999987
No 58
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=23.92 E-value=42 Score=27.13 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.9
Q ss_pred chhhHHHHHHHHHcCCCEEEEEe
Q psy9430 17 LLGRLASIVAKTILNGNRVVVVR 39 (255)
Q Consensus 17 ~lGrlas~iA~~L~~Gd~vvvin 39 (255)
..|++|..+++.|..|+.|.|.-
T Consensus 69 ~wg~~Ae~~~~~l~KG~~V~VeG 91 (153)
T 1z9f_A 69 TFGRLAEFARTYLTKGRLVLVEG 91 (153)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EECHHHHHHHhhCCCCCEEEEEE
Confidence 46899999999999999988753
No 59
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=23.49 E-value=44 Score=27.73 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=19.3
Q ss_pred chhhHHHHHHHHHcCCCEEEEE
Q psy9430 17 LLGRLASIVAKTILNGNRVVVV 38 (255)
Q Consensus 17 ~lGrlas~iA~~L~~Gd~vvvi 38 (255)
+.|++|..+++.|..||.|.|.
T Consensus 60 ~wg~~Ae~~~~~l~KG~~V~Ve 81 (178)
T 1eqq_A 60 LFGKLAEVASEYLRKGSQVYIE 81 (178)
T ss_dssp ECHHHHHHHHHHCCTTCEEEEC
T ss_pred EccHHHHHHHHhcCCCCEEEEE
Confidence 4689999999999999998774
No 60
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=23.11 E-value=43 Score=27.59 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=23.6
Q ss_pred ceeEEEcCCCCcchh-hHHHHHHHHhCCCEEEEEe
Q psy9430 84 KTPILIDGRGHLLGR-LASIVAKTILNGNRVVVVR 117 (255)
Q Consensus 84 r~w~vIDA~g~~LGR-LAs~VAk~Ll~Gd~VVVVN 117 (255)
-.|+=|-| .|+ +|..++++|..|+.|.|.-
T Consensus 70 t~~i~vv~----wg~~lAe~~~~~l~KG~~V~VeG 100 (169)
T 3lgj_A 70 TEWHSVVV----FNPHFAKIALQYLHKGSKVYIEG 100 (169)
T ss_dssp EEEEEEEE----CCHHHHHHHHHHCCTTCEEEEEE
T ss_pred cEEEEEEE----eCHHHHHHHHHhCCCCCEEEEEE
Confidence 45665544 467 9999999999999998864
No 61
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=22.79 E-value=89 Score=21.22 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=22.7
Q ss_pred CeeehhhhhhhhCCchHHHHHHHHHHHH
Q psy9430 214 SYCSVGRISHEVGWKYKTIVRHLERKRR 241 (255)
Q Consensus 214 k~~~lgel~~~~Gwk~~~~~~~le~~r~ 241 (255)
..+++.|||+.+|..-..|...|..-++
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5799999999999998877776665444
No 62
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=22.70 E-value=46 Score=27.28 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.1
Q ss_pred chhhHHHHHHHHHcCCCEEEEEe
Q psy9430 17 LLGRLASIVAKTILNGNRVVVVR 39 (255)
Q Consensus 17 ~lGrlas~iA~~L~~Gd~vvvin 39 (255)
+.|++|..+++.|..||.|+|.-
T Consensus 59 ~wg~~Ae~~~~~l~KG~~V~VeG 81 (168)
T 3afp_A 59 IWREAAENVAESLTRGARVIVTG 81 (168)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EehHHHHHHHHhCCCCCEEEEEE
Confidence 45899999999999999998863
No 63
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=22.59 E-value=44 Score=26.57 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=19.8
Q ss_pred chhhHHHHHHHHHcCCCEEEEEe
Q psy9430 17 LLGRLASIVAKTILNGNRVVVVR 39 (255)
Q Consensus 17 ~lGrlas~iA~~L~~Gd~vvvin 39 (255)
..|++|..+++.|..||.|.|.-
T Consensus 59 ~wg~~Ae~~~~~l~KG~~V~V~G 81 (145)
T 1qvc_A 59 LFGKLAEVASEYLRKGSQVYIEG 81 (145)
T ss_dssp EETHHHHHHHHHCCTTCEEEEEE
T ss_pred EehHHHHHHHHhcCCCCEEEEEE
Confidence 46789999999999999998753
No 64
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=22.46 E-value=22 Score=26.62 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.0
Q ss_pred cchhhHHHHHHHHhCCCEEEEEe
Q psy9430 95 LLGRLASIVAKTILNGNRVVVVR 117 (255)
Q Consensus 95 ~LGRLAs~VAk~Ll~Gd~VVVVN 117 (255)
..|++|..++++|..|+.|.|.-
T Consensus 54 ~~g~~Ae~~~~~l~KG~~V~V~G 76 (104)
T 1txy_A 54 VSGHENQAITHSITVGSRITVQG 76 (104)
T ss_dssp EESSTTHHHHTTCCTTCEEEEEE
T ss_pred EEhHHHHHHHhhCCCCCEEEEEE
Confidence 56889999999999999988754
No 65
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=21.96 E-value=46 Score=26.99 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=19.5
Q ss_pred chhhHHHHHHHHHcCCCEEEEEe
Q psy9430 17 LLGRLASIVAKTILNGNRVVVVR 39 (255)
Q Consensus 17 ~lGrlas~iA~~L~~Gd~vvvin 39 (255)
+.|++|..+++.|..|+.|.|.-
T Consensus 62 ~wg~~Ae~~~~~l~KG~~V~VeG 84 (158)
T 3tqy_A 62 FFNRLAEIVGEYLRKGSKIYIEG 84 (158)
T ss_dssp EETHHHHHHHHHCCTTCEEEEEE
T ss_pred EEhHHHHHHHhhcCCCCEEEEEE
Confidence 36889999999999999987743
No 66
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=21.61 E-value=43 Score=27.80 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=24.0
Q ss_pred cceeEEEcCCCCcchhh-HHHHHHHHhCCCEEEEE
Q psy9430 83 WKTPILIDGRGHLLGRL-ASIVAKTILNGNRVVVV 116 (255)
Q Consensus 83 ~r~w~vIDA~g~~LGRL-As~VAk~Ll~Gd~VVVV 116 (255)
...||=|-+ .|++ |..++++|..|+.|.|.
T Consensus 66 ~Tdw~~Vv~----wgk~lAE~~~~yL~KGs~V~Ve 96 (164)
T 3k81_C 66 EKDHHTIRC----FGELFSAEVKQKVKEGNVVCVN 96 (164)
T ss_dssp CCEEEEEEE----CCHHHHHHHHHHCCTTCEEEEC
T ss_pred ceEEEEEEE----ECCHHHHHHHhhcCCCCEEEEE
Confidence 356777655 4678 99999999999998874
No 67
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=21.52 E-value=1e+02 Score=23.39 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=23.5
Q ss_pred CcccEEEeCCCCchhhHHHHHHHHHc-CCCEEEEEecc
Q psy9430 5 SRKPILIDGRGHLLGRLASIVAKTIL-NGNRVVVVRAE 41 (255)
Q Consensus 5 ~~~w~viDa~~~~lGrlas~iA~~L~-~Gd~vvvina~ 41 (255)
+.+++|+ | .|++++.+|..|. .|..|++|.-+
T Consensus 3 ~~~vlI~---G--~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVC---G--HSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEE---C--CSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEE---C--CCHHHHHHHHHHHHCCCCEEEEECC
Confidence 3455666 3 3889999999887 78888888653
No 68
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=20.40 E-value=49 Score=25.73 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=19.0
Q ss_pred chh-hHHHHHHHHHcCCCEEEEEe
Q psy9430 17 LLG-RLASIVAKTILNGNRVVVVR 39 (255)
Q Consensus 17 ~lG-rlas~iA~~L~~Gd~vvvin 39 (255)
..| ++|..+++.|..||.|.|.-
T Consensus 73 ~wg~~~Ae~~~~~l~KG~~V~V~G 96 (132)
T 3ull_A 73 VFRPGLRDVAYQYVKKGSRIYLEG 96 (132)
T ss_dssp ECSTTHHHHHHHHCCTTCEEEEEE
T ss_pred EEchHHHHHHHhhCCCCCEEEEEE
Confidence 356 69999999999999988753
Done!