BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9431
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ARY|A Chain A, Catalytic Domain Of Human Calpain-1
pdb|2ARY|B Chain B, Catalytic Domain Of Human Calpain-1
Length = 351
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 32 RFRNSWNAVYVAGAWRFVQCNWGARHLVNAKEVPKVGAKGKSDSLRYEYDDHYFLTDPRE 91
R RN W V GAW W V+ E D LR + +D F R+
Sbjct: 284 RMRNPWGEVEWTGAWSDSSSEWNN---VDPYE---------RDQLRVKMEDGEFWMSFRD 331
Query: 92 FIYEFFPLQ 100
F+ EF L+
Sbjct: 332 FMREFTRLE 340
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 13/84 (15%)
Query: 17 SKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGARHLVNAKEVPKVGAKGKSDSL 76
+K YQ G + R RN W V G W W V+ E + L
Sbjct: 269 AKQVTYQ-GQRVNLIRMRNPWGEVEWKGPWSDNSYEWNK---VDPYE---------REQL 315
Query: 77 RYEYDDHYFLTDPREFIYEFFPLQ 100
R + +D F R+FI EF L+
Sbjct: 316 RVKMEDGEFWMSFRDFIREFTKLE 339
>pdb|1ZCM|A Chain A, Human Calpain Protease Core Inhibited By Zllych2f
Length = 321
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 32 RFRNSWNAVYVAGAWRFVQCNWGARHLVNAKEVPKVGAKGKSDSLRYEYDDHYFLTDPRE 91
R RN W V GAW W V+ E D LR + +D F R+
Sbjct: 261 RMRNPWGEVEWTGAWSDSSSEWNN---VDPYE---------RDQLRVKMEDGEFWMSFRD 308
Query: 92 FIYEFFPLQ 100
F+ EF L+
Sbjct: 309 FMREFTRLE 317
>pdb|2RD7|C Chain C, Human Complement Membrane Attack Proteins Share A Common
Fold With Bacterial Cytolysins
Length = 184
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 23 QPGVKFEDNRFRNSWNAVYVAGAWRFVQ 50
QP F+ +F +W V V A RF+Q
Sbjct: 19 QPKANFDAQQFAGTWLLVAVGSACRFLQ 46
>pdb|3OJY|C Chain C, Crystal Structure Of Human Complement Component C8
Length = 182
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 23 QPGVKFEDNRFRNSWNAVYVAGAWRFVQ 50
QP F+ +F +W V V A RF+Q
Sbjct: 17 QPKANFDAQQFAGTWLLVAVGSACRFLQ 44
>pdb|2QOS|C Chain C, Crystal Structure Of Complement Protein C8 In Complex
With A Peptide Containing The C8 Binding Site On C8
Length = 173
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 23 QPGVKFEDNRFRNSWNAVYVAGAWRFVQ 50
QP F+ +F +W V V A RF+Q
Sbjct: 8 QPKANFDAQQFAGTWLLVAVGSAARFLQ 35
>pdb|1IW2|A Chain A, X-Ray Structure Of Human Complement Protein C8gamma At
Ph7.O
pdb|1LF7|A Chain A, Crystal Structure Of Human Complement Protein C8gamma At
1.2 A Resolution
Length = 182
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 23 QPGVKFEDNRFRNSWNAVYVAGAWRFVQ 50
QP F+ +F +W V V A RF+Q
Sbjct: 17 QPKANFDAQQFAGTWLLVAVGSAGRFLQ 44
>pdb|2OVD|A Chain A, Crystal Structure Of Human Complement Protein C8gamma
With Laurate
pdb|2OVE|A Chain A, Crystal Structure Of Recombinant Human Complement
Protein C8gamma
Length = 182
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 23 QPGVKFEDNRFRNSWNAVYVAGAWRFVQ 50
QP F+ +F +W V V A RF+Q
Sbjct: 17 QPKANFDAQQFAGTWLLVAVGSAARFLQ 44
>pdb|2OVA|A Chain A, X-Ray Structure Of Human Complement Protein C8gamma Y83w
Mutant
Length = 182
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 23 QPGVKFEDNRFRNSWNAVYVAGAWRFVQ 50
QP F+ +F +W V V A RF+Q
Sbjct: 17 QPKANFDAQQFAGTWLLVAVGSAARFLQ 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,205,796
Number of Sequences: 62578
Number of extensions: 168237
Number of successful extensions: 379
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 13
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)