BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9431
         (119 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8NBH2|KY_HUMAN Kyphoscoliosis peptidase OS=Homo sapiens GN=KY PE=1 SV=2
          Length = 561

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 12/99 (12%)

Query: 6   AGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGARHLVNAKEVP 65
           AG+ C+ + GYSK  GYQ G  F    F ++WNAVY+ G W  V   WG+  LV+     
Sbjct: 239 AGVQCMTVPGYSKGFGYQTGQSFS-GEFDHAWNAVYLEGRWHLVDSTWGS-GLVDT---- 292

Query: 66  KVGAKGKSDSLRYEYDDHYFLTDPREFIYEFFPLQPEWR 104
                  +    + Y++ YFLT P  FI + FP    W+
Sbjct: 293 ------ITSKFTFLYNEFYFLTHPALFIEDHFPDNKNWQ 325


>sp|Q8C8H8|KY_MOUSE Kyphoscoliosis peptidase OS=Mus musculus GN=Ky PE=1 SV=1
          Length = 661

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 12/99 (12%)

Query: 6   AGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGARHLVNAKEVP 65
           AG+ CV + GYSK  GYQ G  F    F ++WNAVY+ G W  V   WG+  LV+     
Sbjct: 239 AGVQCVTVPGYSKGFGYQTGQSF-SGEFDHAWNAVYLEGRWHLVDSTWGS-GLVDT---- 292

Query: 66  KVGAKGKSDSLRYEYDDHYFLTDPREFIYEFFPLQPEWR 104
                  +    + Y++ YFLT P  FI + FP    W+
Sbjct: 293 ------TTSKFTFLYNEFYFLTHPALFIEDHFPDNKNWQ 325


>sp|Q07533|CYK3_YEAST Cytokinesis protein 3 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=CYK3 PE=1 SV=1
          Length = 885

 Score = 30.8 bits (68), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 23/106 (21%)

Query: 7   GLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWG-----ARHLVNA 61
           G+ C ++ G+ K+    P     + ++ + W  + V   WRF+    G         VN 
Sbjct: 539 GITCEIVIGFLKT----PSAINWEFKYNHCWLRILVNKEWRFIDVILGNVTNPIHEFVNN 594

Query: 62  KEVPKVGAKGKSDSLRYEYDDHYFLTDPREFIYEFFPLQPEWRTHV 107
           +++ K              ++ YFL  P E IY   P + E+  H+
Sbjct: 595 RKIKKA-------------ENSYFLMAPLEMIYTHIPPR-EFEQHI 626


>sp|O55766|RPB1_IIV6 Probable DNA-directed RNA polymerase II subunit RPB1 homolog
           OS=Invertebrate iridescent virus 6 GN=IIV6-176R PE=3
           SV=1
          Length = 1026

 Score = 30.0 bits (66), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 55  ARHLVNAKEVPKVGAKGKSDSLRYEYDDHYFLTDPREFIYEFFPLQPE-WRTHVYQ 109
           +R +V+A+ V K+      D+++ EY +   ++ P++F  E FP+ P   R H  Q
Sbjct: 186 SREIVSAEMVKKI-----FDNIKLEYVEMLGISHPKDFCLEVFPVIPSCCRPHEVQ 236


>sp|O14302|CYK3_SCHPO cytokinesis protein 3 OS=Schizosaccharomyces pombe (strain 972 /
           ATCC 24843) GN=cyk3 PE=1 SV=1
          Length = 886

 Score = 28.9 bits (63), Expect = 8.8,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 18/97 (18%)

Query: 8   LHCVVIKGYSKSAGYQPGVKF--EDNRFRNSWNAVYVAGAWRFVQCNWGARHLVNAKEVP 65
           L C VI+GY KS    P   +   D    ++WN V      R +  ++ +         P
Sbjct: 552 LWCEVIEGYLKS----PDDIYYTRDININHAWNVVTFDNEVRLIDASFAS------PTHP 601

Query: 66  KVGAKGKSDSLRYEYDDHYFLTDPREFIYEFFPLQPE 102
           +   K  S       +D YFL  P E I+   P  P+
Sbjct: 602 QQALKSSSS------NDFYFLMKPNECIFTHVPENPD 632


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.456 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,071,409
Number of Sequences: 539616
Number of extensions: 1905978
Number of successful extensions: 3137
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3129
Number of HSP's gapped (non-prelim): 9
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)