Query psy9431
Match_columns 119
No_of_seqs 119 out of 478
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 19:12:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3isr_A Transglutaminase-like e 99.2 1.2E-11 4.1E-16 97.5 5.9 46 2-56 191-236 (293)
2 2f4m_A Peptide N-glycanase; gl 98.7 9.2E-09 3.1E-13 81.5 4.4 39 1-55 152-192 (295)
3 3kd4_A Putative protease; stru 98.5 9.8E-08 3.3E-12 79.6 5.4 53 1-56 296-348 (506)
4 1vjj_A Protein-glutamine gluta 98.4 2.3E-07 8E-12 80.4 4.9 55 1-55 281-358 (692)
5 2q3z_A Transglutaminase 2; tra 98.3 5.8E-07 2E-11 77.9 4.4 56 1-56 286-364 (687)
6 1g0d_A Protein-glutamine gamma 98.2 1E-06 3.5E-11 76.5 5.4 53 2-54 282-359 (695)
7 1ex0_A Coagulation factor XIII 98.1 3.6E-06 1.2E-10 73.4 5.5 52 2-53 324-399 (731)
8 1x3z_A Peptide: N-glycanase; h 97.7 2.9E-05 1E-09 62.3 5.1 39 1-55 193-233 (335)
9 1e2t_A NAT, N-hydroxyarylamine 93.0 0.26 9.1E-06 37.9 6.7 50 2-56 82-131 (284)
10 2bsz_A Arylamine N-acetyltrans 92.2 0.33 1.1E-05 37.3 6.3 51 2-56 83-133 (278)
11 2qsf_A RAD4, DNA repair protei 92.1 0.4 1.4E-05 40.4 7.1 53 1-54 172-236 (533)
12 2ija_A Arylamine N-acetyltrans 90.4 0.36 1.2E-05 37.3 4.9 52 2-57 83-134 (295)
13 1w4t_A Arylamine N-acetyltrans 90.2 0.47 1.6E-05 36.9 5.4 52 2-56 103-154 (299)
14 3lnb_A N-acetyltransferase fam 89.5 0.48 1.6E-05 37.2 4.9 51 2-56 109-159 (309)
15 2vfb_A Arylamine N-acetyltrans 86.3 0.92 3.2E-05 34.8 4.7 53 2-57 80-134 (280)
16 1w5r_A Arylamine N-acetyltrans 85.4 0.95 3.2E-05 34.7 4.4 53 2-57 83-137 (278)
17 3d9w_A Putative acetyltransfer 83.5 1.2 4.2E-05 34.4 4.2 49 2-56 92-142 (293)
18 2jq5_A SEC-C motif; structural 77.2 1.4 4.6E-05 30.5 2.3 14 39-52 112-125 (128)
19 3pes_A Uncharacterized protein 58.9 4.3 0.00015 25.8 1.5 42 4-51 11-54 (85)
20 3fka_A Uncharacterized NTF-2 l 54.9 8.4 0.00029 25.2 2.6 19 35-53 99-117 (120)
21 3duk_A NTF2-like protein of un 48.9 12 0.0004 24.6 2.6 19 35-53 103-121 (125)
22 3hia_A Choline binding protein 39.3 17 0.00058 23.1 2.1 15 36-52 58-72 (94)
23 3vss_A Beta-fructofuranosidase 34.0 23 0.00079 29.5 2.6 15 38-52 341-355 (496)
24 3blz_A NTF2-like protein of un 33.8 32 0.0011 22.1 2.8 21 35-55 104-124 (128)
25 1h8g_A Major autolysin; cholin 32.0 31 0.0011 21.8 2.5 16 35-52 36-51 (95)
26 2ww6_A Fibritin, T4 fibritin; 29.0 22 0.00074 18.1 1.0 13 39-51 13-25 (27)
27 2qiy_C Ubiquitin carboxyl-term 28.9 14 0.00047 21.4 0.3 13 82-94 22-34 (48)
28 4i4k_A Uncharacterized protein 28.8 45 0.0015 21.9 3.0 17 34-50 118-134 (143)
29 3v2d_N 50S ribosomal protein L 28.4 23 0.0008 24.7 1.5 14 41-54 8-21 (140)
30 1wln_A Afadin; beta sandwich, 28.1 59 0.002 21.0 3.5 30 33-63 59-88 (120)
31 3r8s_J 50S ribosomal protein L 28.1 23 0.0008 24.7 1.4 13 42-54 11-23 (142)
32 2zjr_G 50S ribosomal protein L 27.6 22 0.00076 25.7 1.3 13 42-54 37-49 (174)
33 3o65_A Putative ataxin-3-like 26.7 50 0.0017 24.1 3.1 27 33-59 118-144 (191)
34 2i9w_A Hypothetical protein; c 25.0 24 0.00083 25.7 1.1 15 39-53 138-158 (184)
35 3fm8_A Kinesin-like protein KI 25.0 52 0.0018 22.0 2.7 30 33-63 69-98 (124)
36 2f6e_A Toxin A; beta solenoid, 24.3 42 0.0014 22.2 2.1 12 40-51 107-118 (127)
37 1avy_A Fibritin, gpwac M; bact 23.9 27 0.00094 21.8 1.0 14 39-52 57-70 (74)
38 3gzr_A Uncharacterized protein 23.3 65 0.0022 21.3 3.0 20 33-52 107-126 (146)
39 1yua_A Topoisomerase I; gene-r 23.0 13 0.00046 25.3 -0.6 15 34-48 105-119 (122)
40 2kb3_A Oxoglutarate dehydrogen 21.7 91 0.0031 21.1 3.5 28 33-61 87-114 (143)
41 2ftc_H L13MT, MRP-L13, 39S rib 21.3 36 0.0012 23.9 1.3 12 43-54 15-26 (148)
42 1hcx_A Major autolysin; cholin 21.1 62 0.0021 21.5 2.5 13 40-52 71-83 (127)
No 1
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=99.21 E-value=1.2e-11 Score=97.45 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=40.8
Q ss_pred cccccCCcEEEEEEEeCCCCCCCCCcCCCCCCCceEEEEEECCeEEEEeccCCCc
Q psy9431 2 FESYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGAR 56 (119)
Q Consensus 2 lc~~aGi~~~~V~G~~k~~~~~pg~~~~~~~~~HaWN~V~ldg~W~liD~Twgag 56 (119)
|||++||+|++|+||..+.+ ....|||++|+++|+|+.+|+||+..
T Consensus 191 l~Ra~GIPAR~VsGy~~~~~---------~~~~HAW~Evyl~ggWv~~DpT~~~~ 236 (293)
T 3isr_A 191 LCRALSIPARYFTGYAFKLN---------PPDFHACFEAYIGGNWIIFDATRLVP 236 (293)
T ss_dssp HHHHTTCCEEEEEEEETTCS---------SCCEEEEEEEEETTEEEEECTTCCSC
T ss_pred HHHHCCCCEEEEEEECCCCC---------CCCeEEEEEEEECCcEEEEECCCCCC
Confidence 89999999999999997642 13589999999999999999999874
No 2
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=98.71 E-value=9.2e-09 Score=81.46 Aligned_cols=39 Identities=15% Similarity=0.338 Sum_probs=35.7
Q ss_pred CcccccCCcEEEEEEEeCCCCCCCCCcCCCCCCCceEEEEEECC--eEEEEeccCCC
Q psy9431 1 MFESYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAG--AWRFVQCNWGA 55 (119)
Q Consensus 1 ~lc~~aGi~~~~V~G~~k~~~~~pg~~~~~~~~~HaWN~V~ldg--~W~liD~Twga 55 (119)
.|||++||+|++|+|| ..|||++|+++| .|+.+|+|.+.
T Consensus 152 al~Ra~GIpAR~V~Gy----------------~~HaW~Evy~~g~~gWv~~Dpt~~~ 192 (295)
T 2f4m_A 152 LCCRALGFEARYVWDY----------------TDHVWTEVYSPSQQRWLHCDACEDV 192 (295)
T ss_dssp HHHHHTTCCEEEEEET----------------TTEEEEEEEETTTTEEEEEETTTTE
T ss_pred HHHHHCCCCEEEEcCC----------------CCEEEEEEEECCCCeEEEEeCCcCc
Confidence 3899999999999998 269999999998 99999999875
No 3
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=98.51 E-value=9.8e-08 Score=79.58 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=42.2
Q ss_pred CcccccCCcEEEEEEEeCCCCCCCCCcCCCCCCCceEEEEEECCeEEEEeccCCCc
Q psy9431 1 MFESYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGAR 56 (119)
Q Consensus 1 ~lc~~aGi~~~~V~G~~k~~~~~pg~~~~~~~~~HaWN~V~ldg~W~liD~Twgag 56 (119)
.|||++||+|+.|.++.+..|... ..++ ..||+|.+|++||+||++|+|--++
T Consensus 296 AllRa~GIpA~~v~~~t~~~~~~~-~~lp--~~nh~i~~v~~~g~~y~lDat~~~~ 348 (506)
T 3kd4_A 296 VMLNAAGIPSEVLAVYPGHLDTDA-CGLA--AIQTLAVKATVDGKDQYLSASPLTN 348 (506)
T ss_dssp HHHHHTTCCEEEEEEEETTSCGGG-CCST--TCCEEEEEEEETTEEEEESSSCHHH
T ss_pred HHHHHCCCCcEEEEEEcCCCCCcc-CCCC--CCCEEEEEEEECCEEEEEecCCccc
Confidence 389999999999999998776321 1222 2499999999999999999986554
No 4
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=98.39 E-value=2.3e-07 Score=80.42 Aligned_cols=55 Identities=15% Similarity=0.296 Sum_probs=39.5
Q ss_pred CcccccCCcEEEEEEEeCCCCC-----------CCCCcCCCCCC----CceEEEEEEC--------CeEEEEeccCCC
Q psy9431 1 MFESYAGLHCVVIKGYSKSAGY-----------QPGVKFEDNRF----RNSWNAVYVA--------GAWRFVQCNWGA 55 (119)
Q Consensus 1 ~lc~~aGi~~~~V~G~~k~~~~-----------~pg~~~~~~~~----~HaWN~V~ld--------g~W~liD~Twga 55 (119)
.|||++||||++|+||..+.+. ..|........ .||||+|+++ |.|+.+|+|-..
T Consensus 281 ~~lR~lGIPaR~Vtgy~s~~d~~~nL~~d~~~~~~g~~~~~~~dsIW~~HaW~E~w~~rpDLp~~~~gW~~~DpT~~~ 358 (692)
T 1vjj_A 281 TALRSLGIPSRVITNFNSAHDTDRNLSVDVYYDPMGNPLDKGSDSVWNFHVWNEGWFVRSDLGPSYGGWQVLDATPQE 358 (692)
T ss_dssp HHHHHHTCCEEEEEEEEEEECSSSSSEEEEEECTTSCBCCCCSCEEEEEEEEEEEEECCTTTCGGGCEEEEECCSCSS
T ss_pred HHHHhCCCCeeEEcccccccCCCCCcccceeeccCCcccccccccccceeEEEEEeccccCCCCCCCCEEEECCCCCC
Confidence 3799999999999999644321 11222211222 8999999998 799999999743
No 5
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=98.26 E-value=5.8e-07 Score=77.93 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=38.7
Q ss_pred CcccccCCcEEEEEEEeCCCC----------CC-CCCcCCCC----CCCceEEEEEEC--------CeEEEEeccCCCc
Q psy9431 1 MFESYAGLHCVVIKGYSKSAG----------YQ-PGVKFEDN----RFRNSWNAVYVA--------GAWRFVQCNWGAR 56 (119)
Q Consensus 1 ~lc~~aGi~~~~V~G~~k~~~----------~~-pg~~~~~~----~~~HaWN~V~ld--------g~W~liD~Twgag 56 (119)
.|||++||||++|+||..+.+ +. .|...... ...|||++|+++ +.|.-+|+|-+..
T Consensus 286 ~llRalGIPAR~VsGy~~~~~~~~~l~~d~~~~~~g~~~~~~~d~~~~~HAW~Ev~~~rpDLp~g~~GW~~~DpT~~~~ 364 (687)
T 2q3z_A 286 TVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPGYEGWQALDPTPQEK 364 (687)
T ss_dssp HHHHHHTCCEEEEEEEEEECC--CCHHHHHHHC---------CCCCBSEEEEEEEEECCTTSSTTCCEEEEECCSSCCC
T ss_pred HHHHhCCCCcEEEeecccccccccccccccccCCCCceeeecCCcccceeEEEEEEcccCCCCCCCCCEEEECCCCCcc
Confidence 389999999999999985421 01 12111111 138999999999 5899999998754
No 6
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=98.24 E-value=1e-06 Score=76.46 Aligned_cols=53 Identities=8% Similarity=0.204 Sum_probs=39.1
Q ss_pred cccccCCcEEEEEEEeCCCCC----------CC-CCcCCC--CC----CCceEEEEEEC--------CeEEEEeccCC
Q psy9431 2 FESYAGLHCVVIKGYSKSAGY----------QP-GVKFED--NR----FRNSWNAVYVA--------GAWRFVQCNWG 54 (119)
Q Consensus 2 lc~~aGi~~~~V~G~~k~~~~----------~p-g~~~~~--~~----~~HaWN~V~ld--------g~W~liD~Twg 54 (119)
|||++||||++|+||..+.+- .. |..+.. .. ..||||+|+++ |.|..+|+|-.
T Consensus 282 ~lR~lGIPaR~Vtgy~sa~d~~~nL~id~~~~~~g~~~~~~~~~dsiw~~HaW~E~w~~rpDLp~~~~gWq~~DpTpq 359 (695)
T 1g0d_A 282 VLRCLGIPTRPITNFASAHDVDGNLSVDFLLNERLESLDSRQRSDSSWNFHCWVESWMSREDLPEGNDGWQVLDPTPQ 359 (695)
T ss_dssp HHHHHTCCEEEEEEEEETTTTTTCSEEEEEECTTSCBSCTTCCBCSSEEEEEEEEEEECCTTSCTTCCEEEEEECSCC
T ss_pred HHHhCCCCeeEEccccccCCCCCccceeeeecccCceecccccCCcceeeEEEEEeecccCCCCCCCCCeEEEcCCCc
Confidence 799999999999999875431 11 222211 11 48999999998 78999999973
No 7
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=98.08 E-value=3.6e-06 Score=73.41 Aligned_cols=52 Identities=17% Similarity=0.418 Sum_probs=38.3
Q ss_pred cccccCCcEEEEEEEeCCCCCC----------C-CCcCCC-CC----CCceEEEEEEC--------CeEEEEeccC
Q psy9431 2 FESYAGLHCVVIKGYSKSAGYQ----------P-GVKFED-NR----FRNSWNAVYVA--------GAWRFVQCNW 53 (119)
Q Consensus 2 lc~~aGi~~~~V~G~~k~~~~~----------p-g~~~~~-~~----~~HaWN~V~ld--------g~W~liD~Tw 53 (119)
|||++||||++|+||..+.+.. . |..+.. .+ ..|+||+|++. |.|.-+|+|=
T Consensus 324 ~lR~lGIPaRvVtgy~sa~d~~~~l~v~~~~~~~g~~~~~~~~dsIW~~H~W~E~w~~rpDLp~g~~GWq~~DpTp 399 (731)
T 1ex0_A 324 FLRCLGIPARIVTNYFSAHDNDANLQMDIFLEEDGNVNSKLTKDSVWNYHCWNEAWMTRPDLPVGFGGWQAVDSTP 399 (731)
T ss_dssp HHHHHTCCEEEEEEEEECCSCTTBCEEEEEECTTSCBCTTTCCCCCEEEEEEEEEEECCTTSCTTCCEEEEEEEEE
T ss_pred HHHhCCCCeeEEcccccCCCCCCcceeeEEecccCccccccccCccceeeEEEEEeccccCCCCCCCCeEEEcCCC
Confidence 7899999999999998765311 1 222211 11 37999999997 6899999994
No 8
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=97.75 E-value=2.9e-05 Score=62.33 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=33.4
Q ss_pred CcccccCCcEEEEEEEeCCCCCCCCCcCCCCCCCceEEEEEECC--eEEEEeccCCC
Q psy9431 1 MFESYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAG--AWRFVQCNWGA 55 (119)
Q Consensus 1 ~lc~~aGi~~~~V~G~~k~~~~~pg~~~~~~~~~HaWN~V~ldg--~W~liD~Twga 55 (119)
.|||++||+|++|.|+ ..|+|++|++++ +|.-||+|-+.
T Consensus 193 ~llRalGi~aR~V~~~----------------~~H~W~EV~~~~~~rWv~vDp~~~~ 233 (335)
T 1x3z_A 193 LILKSFGLDVRYVWNR----------------EDHVWCEYFSNFLNRWVHVDSCEQS 233 (335)
T ss_dssp HHHHTTTCCEEEEEET----------------TTEEEEEEEETTTTEEEEEETTTTE
T ss_pred HHHHHCCCCeEEEecC----------------CCcEEEEEEECCCCCEEEECCCCCc
Confidence 3799999999999871 379999999995 79999999643
No 9
>1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent; 2.8A {Salmonella typhimurium} SCOP: d.3.1.5
Probab=93.01 E-value=0.26 Score=37.95 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=39.5
Q ss_pred cccccCCcEEEEEEEeCCCCCCCCCcCCCCCCCceEEEEEECCeEEEEeccCCCc
Q psy9431 2 FESYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGAR 56 (119)
Q Consensus 2 lc~~aGi~~~~V~G~~k~~~~~pg~~~~~~~~~HaWN~V~ldg~W~liD~Twgag 56 (119)
+.+.+|.++..+.|-..... ++. . ....|.=+.|.+||+.|++|+..|+.
T Consensus 82 ~L~~LGF~V~~~~~rV~~~~--~~~-~--~~~~H~~l~V~idg~~ylvDVGFG~~ 131 (284)
T 1e2t_A 82 ALRDIGFNVRSLLGRVILSH--PAS-L--PPRTHRLLLVDVEDEQWIADVGFGGQ 131 (284)
T ss_dssp HHHHTTCCEEEEEEEECTTC--CSS-C--CCSCEEEEEEEETTEEEEECSCSCTT
T ss_pred HHHHCCCeEEEEEEEEecCC--CCC-C--CCCccEEEEEEECCceEEEecCCCcc
Confidence 45789999999999986532 111 1 13689999999999999999999985
No 10
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=92.18 E-value=0.33 Score=37.29 Aligned_cols=51 Identities=8% Similarity=-0.068 Sum_probs=39.1
Q ss_pred cccccCCcEEEEEEEeCCCCCCCCCcCCCCCCCceEEEEEECCeEEEEeccCCCc
Q psy9431 2 FESYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGAR 56 (119)
Q Consensus 2 lc~~aGi~~~~V~G~~k~~~~~pg~~~~~~~~~HaWN~V~ldg~W~liD~Twgag 56 (119)
+.+.+|.++..+.|-..... ++ .+. ....|.=+.|.+||+.|++|+..|+.
T Consensus 83 ~L~~LGF~V~~~~arV~~~~--~~-~~~-~~~~H~~l~V~idg~~ylvDVGFG~~ 133 (278)
T 2bsz_A 83 ALKALGFEVGGLAARVLWGQ--SE-DAI-TARSHMLLRVELDGRTYIADVGFGGL 133 (278)
T ss_dssp HHHHHTCEEEEEEEEECSSC--CS-SSS-CCCCEEEEEEEETTEEEEECSCCSSS
T ss_pred HHHHCCCeEEEEEEEEeeCC--CC-CCC-CCCccEEEEEEECCceEEEeCCCCcc
Confidence 45789999999999885321 11 111 13689999999999999999999986
No 11
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A*
Probab=92.07 E-value=0.4 Score=40.40 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=34.4
Q ss_pred CcccccCCcEEEEEEEeCCCCCCCCCc----------CCCCCCCceEEEEEEC--CeEEEEeccCC
Q psy9431 1 MFESYAGLHCVVIKGYSKSAGYQPGVK----------FEDNRFRNSWNAVYVA--GAWRFVQCNWG 54 (119)
Q Consensus 1 ~lc~~aGi~~~~V~G~~k~~~~~pg~~----------~~~~~~~HaWN~V~ld--g~W~liD~Twg 54 (119)
.|||++|++|+.|...- ..++..... .......|-|.+|+-. ++|..||++=+
T Consensus 172 aLlRalG~~aRlV~SLq-P~~f~~~k~~~~~~k~~~~~~~~~~P~~W~EV~s~~~~rWi~VDp~~~ 236 (533)
T 2qsf_A 172 AMLRACNVNARLIMSCQ-PPDFTNMKIDTSLNGNNAYKDMVKYPIFWCEVWDKFSKKWITVDPVNL 236 (533)
T ss_dssp HHHHHTTCCEEEEEEEC-CCCTTCCBSCCCCC---CHHHHTTSCSEEEEEEETTTTEEEEEESSSS
T ss_pred HHHHHCCCceEEEeccc-cccccccccccCcccCCccccccCCCeEEEEEEEcCCCeEEEEecccc
Confidence 38999999999997531 111100000 0001246999999985 89999999865
No 12
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=90.41 E-value=0.36 Score=37.30 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=39.4
Q ss_pred cccccCCcEEEEEEEeCCCCCCCCCcCCCCCCCceEEEEEECCeEEEEeccCCCcc
Q psy9431 2 FESYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGARH 57 (119)
Q Consensus 2 lc~~aGi~~~~V~G~~k~~~~~pg~~~~~~~~~HaWN~V~ldg~W~liD~Twgag~ 57 (119)
+.+.+|.++..+.|-..... ++ .+. ....|.=+.|.+||+.|++|+..|+..
T Consensus 83 ~L~~LGF~V~~~~~rV~~~~--~~-~~~-~~~~H~~l~V~idg~~ylvDVGFG~~~ 134 (295)
T 2ija_A 83 ALTTIGFETTMLGGYVYSTP--AK-KYS-TGMIHLLLQVTIDGRNYIVDAGSGRSY 134 (295)
T ss_dssp HHHHHTCEEEEEEEEEEETT--TT-EEC-SSCCEEEEEEEETTEEEEECSCCCGGG
T ss_pred HHHHcCCcEEEEEEEEeeCC--CC-CCC-CCCCcEEEEEEECCceEEEeCCCCCcc
Confidence 45788999999999876431 11 111 125899999999999999999999764
No 13
>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT, xenobiotic metabolism, acyltransferase; 1.95A {Pseudomonas aeruginosa} SCOP: d.3.1.5
Probab=90.23 E-value=0.47 Score=36.91 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=39.1
Q ss_pred cccccCCcEEEEEEEeCCCCCCCCCcCCCCCCCceEEEEEECCeEEEEeccCCCc
Q psy9431 2 FESYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGAR 56 (119)
Q Consensus 2 lc~~aGi~~~~V~G~~k~~~~~pg~~~~~~~~~HaWN~V~ldg~W~liD~Twgag 56 (119)
+.+.+|.++..+.|-..... ++. .......|.=+.|.+||+.|++|+..|+.
T Consensus 103 ~L~~LGF~V~~l~arV~~~~--~~~-~~~~~~~H~~l~V~idg~~ylvDVGFG~~ 154 (299)
T 1w4t_A 103 LLLALGYELELLVARVRWGL--PDD-APLTQQSHLMLRLYLAEGEFLVDVGFGSA 154 (299)
T ss_dssp HHHHTTCEEEEEEEEECTTC--CTT-SCCCCEEEEEEEEEETTEEEEECSCSGGG
T ss_pred HHHHcCCeEEEEEEEEEeCC--CCc-CCCCCCccEEEEEEECCceEEEeCCCCCc
Confidence 45789999999999886431 111 10013579999999999999999999985
No 14
>3lnb_A N-acetyltransferase family protein; arylamine N-acetyltransferase, NAT, acetyltrans acyltransferase; HET: COA; 2.01A {Bacillus anthracis}
Probab=89.46 E-value=0.48 Score=37.23 Aligned_cols=51 Identities=8% Similarity=0.005 Sum_probs=39.5
Q ss_pred cccccCCcEEEEEEEeCCCCCCCCCcCCCCCCCceEEEEEECCeEEEEeccCCCc
Q psy9431 2 FESYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGAR 56 (119)
Q Consensus 2 lc~~aGi~~~~V~G~~k~~~~~pg~~~~~~~~~HaWN~V~ldg~W~liD~Twgag 56 (119)
+.+++|.++..+.|.....+. + .+. ....|.=+.|.+||+.|++|+..|+.
T Consensus 109 ~L~~lGf~v~~~~arV~~~~~--~-~~~-~~~~H~~l~V~~~g~~ylvDVGFG~~ 159 (309)
T 3lnb_A 109 FLMDCGFQVYKVAGTVYDLYD--N-KWK-PDDGHVIIILHHNKKDYVIDAGFASH 159 (309)
T ss_dssp HHHHTTCEEEEEEEEEEETTT--T-EEC-STTCEEEEEEEETTEEEEECSCSTTC
T ss_pred HHHHcCCeEEEEeEEEecCCC--C-CCC-CCCccEEEEEEECCeEEEEecCCCCc
Confidence 457899999999998865421 1 111 12589999999999999999999985
No 15
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=86.29 E-value=0.92 Score=34.79 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=39.2
Q ss_pred cccccCCcEEEEEEEeCCCCCCCCCcCCCCCCCceEEEEEECCeE--EEEeccCCCcc
Q psy9431 2 FESYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAW--RFVQCNWGARH 57 (119)
Q Consensus 2 lc~~aGi~~~~V~G~~k~~~~~pg~~~~~~~~~HaWN~V~ldg~W--~liD~Twgag~ 57 (119)
+.+.+|.++..+.|-..... ++. .......|.=+.|.+||+. |++|+..|+..
T Consensus 80 ~L~~LGF~V~~~~arV~~~~--~~~-~~~~~~~H~~l~V~idg~~~~ylvDVGFG~~~ 134 (280)
T 2vfb_A 80 VLAELGYRVRRLAGRVVWLA--PPD-APTPAQTHTVLAVTFPGCQGPYLVDVGFGGMT 134 (280)
T ss_dssp HHHHHTCEEEEEEEEECTTC--CTT-SCCCCSCEEEEEEECTTCSSCEEECSCSGGGC
T ss_pred HHHHCCCeEEEEEEEEEeCC--CCC-CCCCCCCcEEEEEEECCeEEEEEEecCCCccC
Confidence 45788999999999885321 111 1001358999999999999 99999999853
No 16
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A
Probab=85.42 E-value=0.95 Score=34.69 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=39.2
Q ss_pred cccccCCcEEEEEEEeCCCCCCCCCcCCCCCCCceEEEEEECCeE--EEEeccCCCcc
Q psy9431 2 FESYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAW--RFVQCNWGARH 57 (119)
Q Consensus 2 lc~~aGi~~~~V~G~~k~~~~~pg~~~~~~~~~HaWN~V~ldg~W--~liD~Twgag~ 57 (119)
+.+.+|.++..+.|-..... ++ ........|.=+.|.+||+. |++|+..|+..
T Consensus 83 ~L~~LGF~V~~~~arV~~~~--~~-~~~~~~~~H~~l~V~idg~~~~ylvDVGFG~~~ 137 (278)
T 1w5r_A 83 VLEELGFEVERLSGRVVWMR--AD-DAPLPAQTHNVLSVAVPGADGRYLVDVGFGGQT 137 (278)
T ss_dssp HHHHHTCEEEEEEEEECTTC--CT-TCCCCCEEEEEEEEECSSCSCCEEECSCSCTTC
T ss_pred HHHHcCCeEEEEEEEEeeCC--CC-CCCCCCCccEEEEEEECCeEEEEEEecCCCccC
Confidence 45789999999999885321 11 11001257999999999999 99999999863
No 17
>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica}
Probab=83.46 E-value=1.2 Score=34.39 Aligned_cols=49 Identities=8% Similarity=-0.016 Sum_probs=39.1
Q ss_pred cccccCCcEEEEEEEeCCCCCCCCCcCCCCCCCceEEEE-EEC-CeEEEEeccCCCc
Q psy9431 2 FESYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAV-YVA-GAWRFVQCNWGAR 56 (119)
Q Consensus 2 lc~~aGi~~~~V~G~~k~~~~~pg~~~~~~~~~HaWN~V-~ld-g~W~liD~Twgag 56 (119)
+.+++|.++..+.|....... .. ....|.=+.| .+| |+.||+|+..|.+
T Consensus 92 ~L~~LGF~V~~~~arV~~~~~----~~--~~~~H~~l~V~~l~dg~~ylvDVGFG~~ 142 (293)
T 3d9w_A 92 ALERLGFGVTGHTGRVTMGAG----GL--RPATHALLRVTTADDDRVWMCDVGFGRG 142 (293)
T ss_dssp HHHHTTCEEEEEEEEECTTCC----SC--CCEEEEEEEEECSSCSCEEEECCSSSSC
T ss_pred HHHHcCCeEEEEEEEEecCCC----CC--CCCccEEEEEEEcCCCCeEEEecCCCcC
Confidence 457899999999999875421 11 1358999999 999 9999999999954
No 18
>2jq5_A SEC-C motif; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Rhodopseudomonas palustris}
Probab=77.17 E-value=1.4 Score=30.51 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=12.2
Q ss_pred EEEECCeEEEEecc
Q psy9431 39 AVYVAGAWRFVQCN 52 (119)
Q Consensus 39 ~V~ldg~W~liD~T 52 (119)
=|++||+||+||.+
T Consensus 112 F~r~~g~W~YvDG~ 125 (128)
T 2jq5_A 112 FRKARGRWYFSEGE 125 (128)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEeCCE
Confidence 47889999999975
No 19
>3pes_A Uncharacterized protein GP49; PSI2, structural genomics, protein structure initiative, MID center for structural genomics, MCSG; 1.30A {Pseudomonas phage yua}
Probab=58.86 E-value=4.3 Score=25.82 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=23.4
Q ss_pred cccCCcEEEEEEEeCCCCCCCCCcCCCCCCCceEEEEE--ECCeEEEEec
Q psy9431 4 SYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVY--VAGAWRFVQC 51 (119)
Q Consensus 4 ~~aGi~~~~V~G~~k~~~~~pg~~~~~~~~~HaWN~V~--ldg~W~liD~ 51 (119)
|.+||+|.++.-|.... .|... ...-.|.-.- -.|+|.+.|-
T Consensus 11 RVsGIPCLI~V~~~~~Y--~P~~~----s~~~~~~Y~~e~~~~~W~i~DR 54 (85)
T 3pes_A 11 RVAGIPCLIVVTYWEPY--VPAKV----SGPPEYCYPAEGGCGEWEVRDR 54 (85)
T ss_dssp EETTEEEEEEEEEEECC--BCCBC----SSCGGGCBCCBCCEEEEEEECT
T ss_pred hccCCceEEEEeecccc--CCCCC----CCCccccccCCCCccceeeeec
Confidence 57899999887776543 33211 1222333211 1267888884
No 20
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=54.93 E-value=8.4 Score=25.22 Aligned_cols=19 Identities=21% Similarity=0.517 Sum_probs=15.6
Q ss_pred ceEEEEEECCeEEEEeccC
Q psy9431 35 NSWNAVYVAGAWRFVQCNW 53 (119)
Q Consensus 35 HaWN~V~ldg~W~liD~Tw 53 (119)
-.-+.|++||+|.++.-+|
T Consensus 99 D~~~L~k~dg~WkIv~K~~ 117 (120)
T 3fka_A 99 DFLTVLLHEGSWRIVSKVY 117 (120)
T ss_dssp EEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEeCCEEEEEEEEE
Confidence 4667899999999997655
No 21
>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0
Probab=48.89 E-value=12 Score=24.64 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=15.5
Q ss_pred ceEEEEEECCeEEEEeccC
Q psy9431 35 NSWNAVYVAGAWRFVQCNW 53 (119)
Q Consensus 35 HaWN~V~ldg~W~liD~Tw 53 (119)
-.=+.|++||+|.++.-.|
T Consensus 103 D~l~L~k~dg~WkIv~K~~ 121 (125)
T 3duk_A 103 DLFLLLKLDGKWTIVNKVF 121 (125)
T ss_dssp EEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEeCCEEEEEEEEE
Confidence 4567799999999997665
No 22
>3hia_A Choline binding protein; beta hairpin; 2.38A {Streptococcus pneumoniae}
Probab=39.27 E-value=17 Score=23.11 Aligned_cols=15 Identities=33% Similarity=0.997 Sum_probs=11.7
Q ss_pred eEEEEEECCeEEEEecc
Q psy9431 36 SWNAVYVAGAWRFVQCN 52 (119)
Q Consensus 36 aWN~V~ldg~W~liD~T 52 (119)
.| ++++|+||.+|..
T Consensus 58 gW--~~~~g~wYYf~~~ 72 (94)
T 3hia_A 58 QW--FQVGGKWYYVNTS 72 (94)
T ss_dssp EE--EEETTEEEEECTT
T ss_pred EE--EEECCEEEEECCC
Confidence 56 4579999999963
No 23
>3vss_A Beta-fructofuranosidase; glycoside hydrolase family 68, beta-propeller, hydrolase; HET: FRU; 1.97A {Arthrobacter} PDB: 3vsr_A*
Probab=33.99 E-value=23 Score=29.45 Aligned_cols=15 Identities=7% Similarity=0.111 Sum_probs=13.3
Q ss_pred EEEEECCeEEEEecc
Q psy9431 38 NAVYVAGAWRFVQCN 52 (119)
Q Consensus 38 N~V~ldg~W~liD~T 52 (119)
+.|++||+|||+=+|
T Consensus 341 ~vf~~dGKyYLFt~s 355 (496)
T 3vss_A 341 QIYFKDGKSYLFTIS 355 (496)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred cEEEECCEEEEEEec
Confidence 689999999999775
No 24
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=33.80 E-value=32 Score=22.11 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=16.6
Q ss_pred ceEEEEEECCeEEEEeccCCC
Q psy9431 35 NSWNAVYVAGAWRFVQCNWGA 55 (119)
Q Consensus 35 HaWN~V~ldg~W~liD~Twga 55 (119)
..+..|+.||+|+++--.|-.
T Consensus 104 d~~~l~k~dg~WkI~~~~~~~ 124 (128)
T 3blz_A 104 DFFNLLKVEGKWTVVSKIYHT 124 (128)
T ss_dssp EEEEEEEETTEEEEEEEEEEE
T ss_pred EeEEEEEECCEEEEEEEEEEe
Confidence 356789999999998877643
No 25
>1h8g_A Major autolysin; choline-binding domain, cell WALL attachment; 2.4A {Streptococcus pneumoniae} SCOP: b.109.1.1
Probab=32.05 E-value=31 Score=21.79 Aligned_cols=16 Identities=19% Similarity=0.773 Sum_probs=11.8
Q ss_pred ceEEEEEECCeEEEEecc
Q psy9431 35 NSWNAVYVAGAWRFVQCN 52 (119)
Q Consensus 35 HaWN~V~ldg~W~liD~T 52 (119)
-.| ++++|+||.+|..
T Consensus 36 tGW--~~~~g~wYY~~~~ 51 (95)
T 1h8g_A 36 TGW--VKYKDTWYYLDAK 51 (95)
T ss_dssp CEE--EEETTEEEEECTT
T ss_pred cCE--EEECCeEEeEcCC
Confidence 345 4579999999974
No 26
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=28.96 E-value=22 Score=18.11 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=9.8
Q ss_pred EEEECCeEEEEec
Q psy9431 39 AVYVAGAWRFVQC 51 (119)
Q Consensus 39 ~V~ldg~W~liD~ 51 (119)
-|+.||.|.+++.
T Consensus 13 Yvr~dg~WV~l~t 25 (27)
T 2ww6_A 13 YVRKFGEWVLLST 25 (27)
T ss_dssp EEEETTEEEEGGG
T ss_pred eEEEcCeEEEccc
Confidence 4788999987653
No 27
>2qiy_C Ubiquitin carboxyl-terminal hydrolase 3; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae}
Probab=28.88 E-value=14 Score=21.39 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=11.4
Q ss_pred ccccccCchhchh
Q psy9431 82 DHYFLTDPREFIY 94 (119)
Q Consensus 82 ~~YFl~~P~~fi~ 94 (119)
+.||+++|+||..
T Consensus 22 Plf~NT~e~EFs~ 34 (48)
T 2qiy_C 22 PLFINTTEAEFAA 34 (48)
T ss_dssp CEEESSCHHHHHH
T ss_pred eeEeeCCHHHHHH
Confidence 5799999999975
No 28
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=28.79 E-value=45 Score=21.89 Aligned_cols=17 Identities=47% Similarity=0.907 Sum_probs=14.0
Q ss_pred CceEEEEEECCeEEEEe
Q psy9431 34 RNSWNAVYVAGAWRFVQ 50 (119)
Q Consensus 34 ~HaWN~V~ldg~W~liD 50 (119)
.-.|.-|+.+|+|+++=
T Consensus 118 ~~T~v~~r~~g~WrI~~ 134 (143)
T 4i4k_A 118 RASWLAVEQDGQWRLAA 134 (143)
T ss_dssp EEEEEEEEETTEEEEEE
T ss_pred EEEEEEEEECCcEEEEE
Confidence 44788889999999974
No 29
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=28.43 E-value=23 Score=24.65 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=10.7
Q ss_pred EECCeEEEEeccCC
Q psy9431 41 YVAGAWRFVQCNWG 54 (119)
Q Consensus 41 ~ldg~W~liD~Twg 54 (119)
.+.-+|++|||+.-
T Consensus 8 ~~~r~w~viDA~~~ 21 (140)
T 3v2d_N 8 QVEPRWVLIDAEGK 21 (140)
T ss_dssp CCCCCEEEEECSSS
T ss_pred cccceEEEEeCCCC
Confidence 35678999998753
No 30
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=28.14 E-value=59 Score=21.03 Aligned_cols=30 Identities=10% Similarity=0.002 Sum_probs=22.2
Q ss_pred CCceEEEEEECCeEEEEeccCCCccccCCcc
Q psy9431 33 FRNSWNAVYVAGAWRFVQCNWGARHLVNAKE 63 (119)
Q Consensus 33 ~~HaWN~V~ldg~W~liD~Twgag~~~~~~~ 63 (119)
-.||.-.+. +|.|++.|.-=.+|.+.|++.
T Consensus 59 r~Ha~i~~~-~~~~~l~dl~S~ngt~vNg~~ 88 (120)
T 1wln_A 59 PHHCDLTNM-DGVVTVTPRSMDAETYVDGQR 88 (120)
T ss_dssp SSCEEEEES-SSCEEEEESCSSSCEEETSCB
T ss_pred hhheEEEEc-CCEEEEEECCCCCCEEECCEE
Confidence 579877654 899999998766776666543
No 31
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=28.08 E-value=23 Score=24.70 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=9.8
Q ss_pred ECCeEEEEeccCC
Q psy9431 42 VAGAWRFVQCNWG 54 (119)
Q Consensus 42 ldg~W~liD~Twg 54 (119)
+.-+|++||++.-
T Consensus 11 ~~r~W~viDA~g~ 23 (142)
T 3r8s_J 11 VKRDWYVVDATGK 23 (142)
T ss_dssp CCCCEEEEECTTC
T ss_pred ccCcEEEEeCCCC
Confidence 3467999998753
No 32
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=27.63 E-value=22 Score=25.71 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=11.0
Q ss_pred ECCeEEEEeccCC
Q psy9431 42 VAGAWRFVQCNWG 54 (119)
Q Consensus 42 ldg~W~liD~Twg 54 (119)
+..+|++|||+.-
T Consensus 37 ~~r~W~vIDA~g~ 49 (174)
T 2zjr_G 37 DEQNWVVVDASGV 49 (174)
T ss_dssp SCCCEEEEECTTS
T ss_pred ccccEEEEeCCCC
Confidence 7889999998853
No 33
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=26.74 E-value=50 Score=24.10 Aligned_cols=27 Identities=7% Similarity=0.106 Sum_probs=22.3
Q ss_pred CCceEEEEEECCeEEEEeccCCCcccc
Q psy9431 33 FRNSWNAVYVAGAWRFVQCNWGARHLV 59 (119)
Q Consensus 33 ~~HaWN~V~ldg~W~liD~Twgag~~~ 59 (119)
..|.-..=+|+|.||-+|....++...
T Consensus 118 ~~HWfaiRkigg~WyNLdS~l~~P~~i 144 (191)
T 3o65_A 118 KQHWFTIRKFGKHWFNLNSLLAGPELI 144 (191)
T ss_dssp SSCEEEEEEETTEEEECCTTSSSCEEE
T ss_pred ccceeeEEecCCEEEEccCCCCCCCCc
Confidence 367777778999999999999888654
No 34
>2i9w_A Hypothetical protein; cystatin-like fold, SEC-C motif fold, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.75A {Psychrobacter arcticus} SCOP: d.17.4.30 g.74.1.1 g.74.1.1
Probab=24.97 E-value=24 Score=25.67 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=12.5
Q ss_pred EEEECC------eEEEEeccC
Q psy9431 39 AVYVAG------AWRFVQCNW 53 (119)
Q Consensus 39 ~V~ldg------~W~liD~Tw 53 (119)
=|+.|| +||+||.+-
T Consensus 138 Fvr~~G~~~~~~rW~YvDG~~ 158 (184)
T 2i9w_A 138 FVKIKNKANSDASWYFLDPTV 158 (184)
T ss_dssp EEEEECSSSSCEEEEECCSSS
T ss_pred ceecCCccccccceeeccCCC
Confidence 467889 999999875
No 35
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=24.97 E-value=52 Score=21.96 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=22.5
Q ss_pred CCceEEEEEECCeEEEEeccCCCccccCCcc
Q psy9431 33 FRNSWNAVYVAGAWRFVQCNWGARHLVNAKE 63 (119)
Q Consensus 33 ~~HaWN~V~ldg~W~liD~Twgag~~~~~~~ 63 (119)
-.||.-...-+|++++.|.. .+|.+.|++.
T Consensus 69 ~~Ha~I~~~~~g~~~l~dl~-~ngt~VNG~~ 98 (124)
T 3fm8_A 69 PEHCIIDITSEGQVMLTPQK-NTRTFVNGSS 98 (124)
T ss_dssp SSCEEEEECTTSCEEEEECT-TCCEEETTEE
T ss_pred cceEEEEECCCCeEEEEECC-CCCEEECCEE
Confidence 47987765558999999997 6787666543
No 36
>2f6e_A Toxin A; beta solenoid, C-terminal repetitive domain, crops; 1.85A {Clostridium difficile}
Probab=24.30 E-value=42 Score=22.22 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=7.9
Q ss_pred EEECCeEEEEec
Q psy9431 40 VYVAGAWRFVQC 51 (119)
Q Consensus 40 V~ldg~W~liD~ 51 (119)
+.|+|+||.+|.
T Consensus 107 ~~~~g~~Yyf~~ 118 (127)
T 2f6e_A 107 FEIDGVIYFFGV 118 (127)
T ss_dssp EEETTEEEEECT
T ss_pred EEECCEEEEECC
Confidence 445777777775
No 37
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=23.85 E-value=27 Score=21.78 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=11.3
Q ss_pred EEEECCeEEEEecc
Q psy9431 39 AVYVAGAWRFVQCN 52 (119)
Q Consensus 39 ~V~ldg~W~liD~T 52 (119)
=|+.||.|.+++.-
T Consensus 57 YVrkDgaWVlL~t~ 70 (74)
T 1avy_A 57 YVRKDGEWVLLSTF 70 (74)
T ss_dssp EEEETTEEEEGGGG
T ss_pred eEEecCeeEEeecc
Confidence 48899999998754
No 38
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=23.28 E-value=65 Score=21.35 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=16.1
Q ss_pred CCceEEEEEECCeEEEEecc
Q psy9431 33 FRNSWNAVYVAGAWRFVQCN 52 (119)
Q Consensus 33 ~~HaWN~V~ldg~W~liD~T 52 (119)
....|-.|+.||+|+++=..
T Consensus 107 ~~~t~v~vr~dg~WrI~a~h 126 (146)
T 3gzr_A 107 DRLTLLAVEREGVWRFIHGH 126 (146)
T ss_dssp EEEEEEEEEETTEEEEEEEE
T ss_pred cEEEEEEEEECCEEEEEEEe
Confidence 35688889999999998653
No 39
>1yua_A Topoisomerase I; gene-regulating protein, DNA binding protein; NMR {Escherichia coli} SCOP: g.41.3.3 g.41.3.3
Probab=23.00 E-value=13 Score=25.31 Aligned_cols=15 Identities=40% Similarity=0.962 Sum_probs=12.6
Q ss_pred CceEEEEEECCeEEE
Q psy9431 34 RNSWNAVYVAGAWRF 48 (119)
Q Consensus 34 ~HaWN~V~ldg~W~l 48 (119)
.--|.++++||+|..
T Consensus 105 aTgW~a~y~dGkW~~ 119 (122)
T 1yua_A 105 ATGWSAFYVDGKWVE 119 (122)
T ss_dssp CCCCCEEBCSSCBCC
T ss_pred ccceEEEEeCCEEEe
Confidence 457999999999953
No 40
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=21.65 E-value=91 Score=21.06 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=20.0
Q ss_pred CCceEEEEEECCeEEEEeccCCCccccCC
Q psy9431 33 FRNSWNAVYVAGAWRFVQCNWGARHLVNA 61 (119)
Q Consensus 33 ~~HaWN~V~ldg~W~liD~Twgag~~~~~ 61 (119)
-.||--.+ -+|.|++.|.--.+|.+.|+
T Consensus 87 r~Ha~I~~-~~~~~~l~DlgS~NGT~VNg 114 (143)
T 2kb3_A 87 RRHAEFRI-NEGEFEVVDVGSLNGTYVNR 114 (143)
T ss_dssp SSSEEEEE-ETTEEEEEESCCSSCCEETT
T ss_pred hhhEEEEE-ECCEEEEEECCCcCCeEECC
Confidence 47886655 58999999985556655554
No 41
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=21.33 E-value=36 Score=23.89 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=9.8
Q ss_pred CCeEEEEeccCC
Q psy9431 43 AGAWRFVQCNWG 54 (119)
Q Consensus 43 dg~W~liD~Twg 54 (119)
.-+|++|||+.-
T Consensus 15 ~r~w~viDA~g~ 26 (148)
T 2ftc_H 15 ARIWYLLDGKMQ 26 (148)
T ss_pred cCcEEEEeCCCC
Confidence 578999999853
No 42
>1hcx_A Major autolysin; choline-binding domain, cell WALL attachment; HET: TPT DDQ; 2.6A {Streptococcus pneumoniae} SCOP: b.109.1.1 PDB: 1gvm_A* 2bml_A*
Probab=21.15 E-value=62 Score=21.46 Aligned_cols=13 Identities=15% Similarity=0.565 Sum_probs=8.7
Q ss_pred EEECCeEEEEecc
Q psy9431 40 VYVAGAWRFVQCN 52 (119)
Q Consensus 40 V~ldg~W~liD~T 52 (119)
++++|+||.+|..
T Consensus 71 ~~~~g~wYY~~~~ 83 (127)
T 1hcx_A 71 VKYKDTWYYLDAK 83 (127)
T ss_dssp EEETTEEEEECTT
T ss_pred EEECCEEEEEeCC
Confidence 4567777777763
Done!