RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9431
         (119 letters)



>gnl|CDD|227604 COG5279, CYK3, Uncharacterized protein involved in cytokinesis,
           contains TGc (transglutaminase/protease-like) domain
           [Cell division and chromosome partitioning].
          Length = 521

 Score = 46.9 bits (111), Expect = 4e-07
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 16/98 (16%)

Query: 6   AGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGARHLVNAKEVP 65
            G+ C +I+G+ KS    P     D    ++WN V +   +  V   WG           
Sbjct: 226 LGIPCEIIEGFLKS----PIYYTRDININHAWNIVKIDNEYYLVDTTWGD---------- 271

Query: 66  KVGAKGKSDSLRYEYDDHYFLTDPREFIYEFFPLQPEW 103
                   +S   + +  YFL  P + I    P + +W
Sbjct: 272 --PIHPDQNSKSSKINHSYFLLAPNQMIATHVPEKDDW 307


>gnl|CDD|214673 smart00460, TGc, Transglutaminase/protease-like homologues.
          Transglutaminases are enzymes that establish covalent
          links between proteins. A subset of transglutaminase
          homologues appear to catalyse the reverse reaction, the
          hydrolysis of peptide bonds. Proteins with this domain
          are both extracellular and intracellular, and it is
          likely that the eukaryotic intracellular proteins are
          involved in signalling events.
          Length = 68

 Score = 41.2 bits (97), Expect = 3e-06
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 5  YAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNW 53
            G+   V+ GY K+     G++       ++W  VY+ G W  V    
Sbjct: 22 SLGIPARVVSGYLKAPDTIGGLR--SIWEAHAWAEVYLEGGWVPVDPTP 68


>gnl|CDD|237531 PRK13850, PRK13850, type IV secretion system protein VirD4;
           Provisional.
          Length = 670

 Score = 27.1 bits (60), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 93  IYEFFPLQPEWRTHVYQASV-LTTTPPR 119
           +++F PL PE RTH Y   + +   PP 
Sbjct: 192 VFKFAPLDPERRTHCYNPVLDIAALPPE 219


>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
          Length = 414

 Score = 27.0 bits (60), Expect = 3.0
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 8/32 (25%)

Query: 74  DSLRYEYDDHYF-LTDP-------REFIYEFF 97
             LR E ++HYF LT+P       RE+  E  
Sbjct: 94  KYLRCEPEEHYFILTEPPMNPPENREYTAEIM 125


>gnl|CDD|183215 PRK11587, PRK11587, putative phosphatase; Provisional.
          Length = 218

 Score = 26.1 bits (58), Expect = 4.7
 Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 4/23 (17%)

Query: 42 VAGAWRFVQCNWGARHLVNAKEV 64
          V  AW     NW  RH +   EV
Sbjct: 21 VERAW----SNWADRHGIAPDEV 39


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.137    0.456 

Gapped
Lambda     K      H
   0.267   0.0694    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,143,770
Number of extensions: 507573
Number of successful extensions: 360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 15
Length of query: 119
Length of database: 10,937,602
Length adjustment: 82
Effective length of query: 37
Effective length of database: 7,300,574
Effective search space: 270121238
Effective search space used: 270121238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)