RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9431
(119 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.72
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 26/87 (29%)
Query: 3 ESYAGLHCVVIKGYSKSAGYQP---GVKFEDNRFRNSWNAVYVAGAWRFVQCNWGARHLV 59
E+ LH ++ Y+ + + D F + ++ HL
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-----HI------------GHHLK 482
Query: 60 NAKEVPKVGAKGKSDSLRYEYDDHYFL 86
N + + R + D FL
Sbjct: 483 NIEHP------ERMTLFRMVFLDFRFL 503
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation
and repression, structural genomics; NMR {Homo sapiens}
SCOP: a.4.5.21
Length = 107
Score = 26.9 bits (59), Expect = 0.85
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 44 GAWRFVQCNWGARHLVNAKEVPKVGAKGKSDSLRYEYDDHYFLTDPREFIYEFFPLQPEW 103
G +R V+ A+ K+ ++ + S +LRY Y R +Y+F W
Sbjct: 37 GIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGW 96
Query: 104 RT 105
+
Sbjct: 97 QE 98
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.8 bits (56), Expect = 3.4
Identities = 4/5 (80%), Positives = 4/5 (80%)
Query: 101 PEWRT 105
EWRT
Sbjct: 61 SEWRT 65
>3erv_A Putative C39-like peptidase; structural genomics, unknown function,
PSI-2, protein structure initiative; 2.10A {Bacillus
anthracis}
Length = 236
Score = 25.9 bits (56), Expect = 3.8
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 5 YAGLHCVVIKGYSKSAGY-------QPGVKFEDNRFRNSWNA 39
HCVV+ GY + + Y VK +F +W
Sbjct: 174 TYNEHCVVLIGYDQESVYIRDPLKDSLDVKVPREKFEQAWVQ 215
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 25.6 bits (57), Expect = 4.6
Identities = 4/33 (12%), Positives = 7/33 (21%), Gaps = 10/33 (30%)
Query: 77 RYEYDDHYFLT----------DPREFIYEFFPL 99
+ + H F I + P
Sbjct: 181 KEDTLVHAFHDCVQDLMKTWDHWSIQILDMVPF 213
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 25.6 bits (57), Expect = 4.8
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 13/35 (37%)
Query: 77 RYEYDDHYFLT-------------DPREFIYEFFP 98
R+ Y+D F F+Y FP
Sbjct: 173 RFTYEDTDFQHMIELFSENVELAASASVFLYNAFP 207
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 25.6 bits (57), Expect = 5.2
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 13/36 (36%)
Query: 77 RYEYDDHYFLT-------------DPREFIYEFFPL 99
R+EYDD FL + P+
Sbjct: 172 RFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPV 207
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA;
1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A
2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*
Length = 399
Score = 25.2 bits (54), Expect = 6.1
Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 7/87 (8%)
Query: 7 GLHCVVIKGYSKSAGYQPGVKFEDNRFRNS----WNAVYVAGAWRFVQCNWGARHLVNAK 62
Y+ G + ++N + V + + L+N
Sbjct: 299 TSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGT---LLNGT 355
Query: 63 EVPKVGAKGKSDSLRYEYDDHYFLTDP 89
++ A G S S+ + H +
Sbjct: 356 QINASAANGLSSSVGWTPSLHGSIDAS 382
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A
{Xylella fastidiosa}
Length = 291
Score = 25.2 bits (55), Expect = 6.3
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 8/37 (21%)
Query: 3 ESYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNA 39
++ G H V+ GY + F R RNSW
Sbjct: 231 DTLEGGHAVLCVGYDDEIRH-----F---RIRNSWGN 259
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex,
type II TGF-beta receptor, activa alternative splicing,
cytoplasm; HET: DNA; 2.20A {Mus musculus}
Length = 103
Score = 24.6 bits (53), Expect = 6.4
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 44 GAWRFVQCNWGARHLVNAKEVPKVGAKGKSDSLRYEYDDHYFL-TDPREFIYEFFPLQPE 102
G ++F++ A+ K+ + + S ++RY Y D R +Y+F
Sbjct: 33 GVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNSSG 92
Query: 103 WRT 105
W+
Sbjct: 93 WKE 95
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 25.2 bits (56), Expect = 6.8
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 13/35 (37%)
Query: 77 RYEYDDHYFLT-------------DPREFIYEFFP 98
R++Y D FL ++E F
Sbjct: 168 RFDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFS 202
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 24.8 bits (55), Expect = 8.7
Identities = 3/34 (8%), Positives = 8/34 (23%), Gaps = 11/34 (32%)
Query: 77 RYEYDDHYFL-----------TDPREFIYEFFPL 99
Y+ D ++ + + P
Sbjct: 169 SYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPW 202
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.456
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,930,453
Number of extensions: 100371
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 18
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)