RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9431
         (119 letters)



>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 94

 Score = 25.5 bits (56), Expect = 0.88
 Identities = 14/62 (22%), Positives = 25/62 (40%)

Query: 44  GAWRFVQCNWGARHLVNAKEVPKVGAKGKSDSLRYEYDDHYFLTDPREFIYEFFPLQPEW 103
           G +R V+    A+     K+  ++  +  S +LRY Y         R  +Y+F      W
Sbjct: 30  GIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGW 89

Query: 104 RT 105
           + 
Sbjct: 90  QE 91


>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 88

 Score = 23.2 bits (50), Expect = 6.7
 Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 11/62 (17%)

Query: 44 GAWRFVQCN-------WGARHLVNAKEVPKVGAKGKSDSLRYEYDDHYFLTDPREFIYEF 96
          G ++F   +       WG +         K+  +  + +LR            ++  Y+F
Sbjct: 29 GTFQFSSKHKEALAHRWGIQK----GNRKKMTYEKMARALRNYGKTGEVKKVKKKLTYQF 84

Query: 97 FP 98
            
Sbjct: 85 SG 86


>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
           {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
          Length = 653

 Score = 23.7 bits (51), Expect = 7.2
 Identities = 8/37 (21%), Positives = 11/37 (29%)

Query: 82  DHYFLTDPREFIYEFFPLQPEWRTHVYQASVLTTTPP 118
           D  F  D R  I        EW+  V +   +     
Sbjct: 443 DTKFSEDVRMKISVLSEFPEEWKNKVEEWHSIINPKV 479


>d1j7na2 d.92.1.14 (A:551-773) Anthrax toxin lethal factor, N- and
           C-terminal domains {Bacillus anthracis [TaxId: 1392]}
          Length = 223

 Score = 23.3 bits (50), Expect = 8.7
 Identities = 6/27 (22%), Positives = 7/27 (25%), Gaps = 4/27 (14%)

Query: 82  DHYFLTDPREFIYE----FFPLQPEWR 104
             Y  T+  EF  E            R
Sbjct: 176 TSYGRTNEAEFFAEAFRLMHSTDHAER 202


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.456 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 489,258
Number of extensions: 20727
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 8
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)