BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9433
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FBW|C Chain C, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2FBW|P Chain P, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2WQY|C Chain C, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
pdb|2WQY|P Chain P, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
Length = 141
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 5 LSITHRGTGVALT--AYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSY 62
+SITHRGTGVAL+ +A + L V+ V +L+LS ++ + KF L FP+SY
Sbjct: 38 MSITHRGTGVALSLGVSLFSVAALLLPEQFPHYVAVVKSLSLSPALIYSAKFALVFPLSY 97
Query: 63 HTANGIRHLIWDTGRALTIKKVYTTGYAML 92
HT NGIRHL+WD G+ + +V +G +L
Sbjct: 98 HTWNGIRHLVWDMGKGFKLSQVEQSGVVVL 127
>pdb|1ZOY|C Chain C, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|C Chain C, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3ABV|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
pdb|3SFD|C Chain C, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|C Chain C, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 140
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Query: 5 LSITHRGTGVALTA--YALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSY 62
+SI HRGTG+AL+A GL+ + L + S + V +L L ++ KF + FP+ Y
Sbjct: 38 MSICHRGTGIALSAGVSLFGLSALLLPGNFESHLELVKSLCLGPTLIYTAKFGIVFPLMY 97
Query: 63 HTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNL 100
HT NGIRHLIWD G+ LTI ++ +G +L +L+++
Sbjct: 98 HTWNGIRHLIWDLGKGLTIPQLTQSGVVVLILTVLSSV 135
>pdb|2H88|C Chain C, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H88|P Chain P, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H89|C Chain C, Avian Respiratory Complex Ii With Malonate Bound
Length = 140
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 5 LSITHRGTGVALT--AYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSY 62
+SITHRGTGVAL+ LA + L V+ V +L+LS ++ + KF L FP+SY
Sbjct: 38 MSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVVKSLSLSPALIYSAKFALVFPLSY 97
Query: 63 HTANGIRHLIWDTGRALTIKKVYTTGYAML 92
HT NGIRHL+WD G+ + +V +G +L
Sbjct: 98 HTWNGIRHLVWDMGKGFKLSQVEQSGVVVL 127
>pdb|1YQ3|C Chain C, Avian Respiratory Complex Ii With Oxaloacetate And
Ubiquinone
pdb|1YQ4|C Chain C, Avian Respiratory Complex Ii With 3-Nitropropionate And
Ubiquinone
Length = 141
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 5 LSITHRGTGVALT--AYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSY 62
+SITHRGTGVAL+ LA + L V+ V +L+LS ++ + KF L FP+SY
Sbjct: 38 MSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVVKSLSLSPALIYSAKFALVFPLSY 97
Query: 63 HTANGIRHLIWDTGRALTIKKVYTTGYAML 92
HT NGIRHL+WD G+ + +V +G +L
Sbjct: 98 HTWNGIRHLVWDMGKGFKLSQVEQSGVVVL 127
>pdb|3VR8|C Chain C, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|G Chain G, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|C Chain C, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|G Chain G, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 188
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVG---LTTDINSVVSFVDALNLSAPILLAGKFILA 57
+T ++S HR TG A+ A L + GVG L D + V F+ L + IL KFI+A
Sbjct: 67 MTWMVSGLHRVTGCAM-AGTLLIGGVGFSVLPLDFTTFVEFIRGLGIPWVILDTFKFIIA 125
Query: 58 FPVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNL 100
FP+++HT NGIR + +D + I +Y Y +LG A L +L
Sbjct: 126 FPIAFHTLNGIRFIGFDMAKGTDIPSIYRGAYLVLGLAALISL 168
>pdb|1NEK|C Chain C, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Ubiquinone Bound
pdb|1NEN|C Chain C, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Dinitrophenol-17 Inhibitor Co-Crystallized At The
Ubiquinone Binding Site
pdb|2ACZ|C Chain C, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Atpenin A5 Inhibitor Co-Crystallized At The Ubiquinone
Binding Site
pdb|2WDQ|C Chain C, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|G Chain G, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|K Chain K, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDV|C Chain C, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|G Chain G, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|K Chain K, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDR|C Chain C, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|G Chain G, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|K Chain K, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WP9|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WS3|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WU5|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
Length = 129
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 17/112 (15%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAF-- 58
IT++ SI HR +GV +T A+G+ L T ++S F A SA + G F + F
Sbjct: 22 ITAIASILHRVSGV-ITFVAVGILLWLLGTSLSSPEGFEQA---SA---IMGSFFVKFIM 74
Query: 59 -----PVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
++YH GIRH++ D G +++ + G + + +VL+LL
Sbjct: 75 WGILTALAYHVVVGIRHMMMDFG---YLEETFEAGKRSAKISFVITVVLSLL 123
>pdb|2WU2|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
Length = 129
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 17/112 (15%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAF-- 58
IT++ SI HR +GV +T A+G+ L T ++S F A SA + G F + F
Sbjct: 22 ITAIASILHRVSGV-ITFVAVGILLWLLGTSLSSPEGFEQA---SA---IMGSFFVKFIM 74
Query: 59 -----PVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
++Y GIRH++ D G +++ + G + + +VL+LL
Sbjct: 75 WGILTALAYMVVVGIRHMMMDFG---YLEETFEAGKRSAKISFVITVVLSLL 123
>pdb|3EQX|A Chain A, Crystal Structure Of A Fic Family Protein (So_4266) From
Shewanella Oneidensis At 1.6 A Resolution
pdb|3EQX|B Chain B, Crystal Structure Of A Fic Family Protein (So_4266) From
Shewanella Oneidensis At 1.6 A Resolution
Length = 373
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 25 GVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYH 63
G G T + +++ +D LSAPIL ++I+A Y+
Sbjct: 204 GNGRTGRVLNILYLIDQQLLSAPILYLSRYIVAHKQDYY 242
>pdb|2OQC|A Chain A, Crystal Structure Of Penicillin V Acylase From Bacillus
Subtilis
pdb|2OQC|B Chain B, Crystal Structure Of Penicillin V Acylase From Bacillus
Subtilis
Length = 327
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 13 GVALTAYALGLAGVGLTTDINSVVSFVDALNL 44
G+AL+A+ GL VGL D FV A+ L
Sbjct: 202 GLALSAFGQGLGTVGLPGDYTPPSRFVRAVYL 233
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 12 TGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAG-KFILAFPVSYHTANGIRH 70
+GV TA A GLA + D+ V++ +L LLAG K+ F + ++
Sbjct: 216 SGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL--LKQ 273
Query: 71 LIWDTGRALTIKKVYT---TGYAMLGAAILTNLVLTLL 105
L DT L I +++T G A G NL+ LL
Sbjct: 274 LEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,746,380
Number of Sequences: 62578
Number of extensions: 94289
Number of successful extensions: 368
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 18
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)