BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9433
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P70097|C560_CRIGR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
OS=Cricetulus griseus GN=SDHC PE=2 SV=1
Length = 169
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 66/98 (67%), Gaps = 2/98 (2%)
Query: 4 VLSITHRGTGVALTA--YALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVS 61
V+SI HRGTGVAL+ GL+ + L + S + F+ +L L ++ + KF+L FP+
Sbjct: 66 VMSICHRGTGVALSGGVSLFGLSALLLPGNFESYLMFIKSLCLGPALIHSAKFVLVFPLM 125
Query: 62 YHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTN 99
YH+ NGIRHLIWD G+ L+I +VY +G A+L A+L++
Sbjct: 126 YHSLNGIRHLIWDLGKGLSISQVYQSGVAVLMLAVLSS 163
>sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
OS=Bos taurus GN=SDHC PE=1 SV=2
Length = 169
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 5 LSITHRGTGVALTA--YALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSY 62
+SI HRGTG+AL+A GL+ + + S + FV +L L ++ KF L FP+ Y
Sbjct: 67 MSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFVKSLCLGPALIHTAKFALVFPLMY 126
Query: 63 HTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNL 100
HT NGIRHL+WD G+ LTI +++ +G A+L +L+++
Sbjct: 127 HTWNGIRHLMWDLGKGLTISQLHQSGVAVLVLTVLSSV 164
>sp|Q99643|C560_HUMAN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
OS=Homo sapiens GN=SDHC PE=1 SV=1
Length = 169
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 5 LSITHRGTGVALTA--YALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSY 62
+SI HRGTG+AL+A G++ + L + S + V +L L ++ KF L FP+ Y
Sbjct: 67 MSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMY 126
Query: 63 HTANGIRHLIWDTGRALTIKKVYTTG 88
HT NGIRHL+WD G+ L I ++Y +G
Sbjct: 127 HTWNGIRHLMWDLGKGLKIPQLYQSG 152
>sp|Q9CZB0|C560_MOUSE Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
OS=Mus musculus GN=Sdhc PE=2 SV=1
Length = 169
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 5 LSITHRGTGVALTA--YALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSY 62
LS+ HRG+G+AL+ GL+ + L + S + FV +L L ++ + KF+L FP+ Y
Sbjct: 67 LSVCHRGSGIALSGGVSLFGLSALLLPGNFESYLMFVKSLCLGPTLIYSAKFVLVFPLMY 126
Query: 63 HTANGIRHLIWDTGRALTIKKVYTTG 88
H+ NGIRHL+WD G+ L I +V+ +G
Sbjct: 127 HSLNGIRHLLWDLGKGLAIPQVWLSG 152
>sp|D0VWV4|C560_PIG Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
OS=Sus scrofa GN=SDHC PE=1 SV=2
Length = 169
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 5 LSITHRGTGVALTA--YALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSY 62
+SI HRGTG+AL+A GL+ + L + S + V +L L ++ KF + FP+ Y
Sbjct: 67 MSICHRGTGIALSAGVSLFGLSALLLPGNFESHLELVKSLCLGPTLIYTAKFGIVFPLMY 126
Query: 63 HTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTN 99
HT NGIRHLIWD G+ LTI ++ +G +L +L++
Sbjct: 127 HTWNGIRHLIWDLGKGLTIPQLTQSGVVVLILTVLSS 163
>sp|O74882|SDH3_SCHPO Succinate dehydrogenase cytochrome B subunit, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sdh3 PE=3 SV=1
Length = 180
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 15/109 (13%)
Query: 1 ITSVLSITHRGTGV----ALTAYALG-----LAGVGL-TTDINSVVSFVDALNLSAPILL 50
+T LS HR TG L A+A+G LAG L T I+ ++ V I +
Sbjct: 71 LTWYLSSLHRITGCVVAGTLYAFAMGYLVAPLAGYSLDTATISGLIQQVPTW-----IKV 125
Query: 51 AGKFILAFPVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTN 99
KF++++P+++H NGIRHLIWDT + L++K VY TGYA+L ++LT+
Sbjct: 126 PAKFVISYPLTFHIFNGIRHLIWDTTKELSLKGVYRTGYAVLALSVLTS 174
>sp|P80481|C560_RECAM Succinate dehydrogenase cytochrome b560 subunit OS=Reclinomonas
americana GN=SDH3 PE=3 SV=1
Length = 144
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 1 ITSVLSITHRGTG----VALTAYALGLAGVGLTTDINSVVSFVDALN-LSAPILLAGKFI 55
IT+ LSI HR TG + L + L L + + S LN S + +A F
Sbjct: 34 ITNTLSIFHRITGGVLALTLCFFILILKMLNFHLSSYAFYSIAYTLNQYSGFLFIAISFF 93
Query: 56 LAFPVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLV 101
L + YH G+RHL+WD G AL I+ VY TGY MLG A L L+
Sbjct: 94 LLLFIFYHLFAGLRHLVWDAGYALEIENVYLTGYIMLGLAFLFTLI 139
>sp|Q8T2T5|C560_DICDI Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
OS=Dictyostelium discoideum GN=sdhC PE=3 SV=1
Length = 192
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILL-AGKFILAFP 59
+ +V+SI HR TG+ L GLAGV L + + ++ L+ P L+ KF +A P
Sbjct: 84 LPAVMSIMHRATGICLALGITGLAGVTLFAP-HDAIHYIQLLHTQYPALVYPAKFAVALP 142
Query: 60 VSYHTANGIRHLIWD-TGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
++YH G+RH+IWD T + L+I ++ ++G +L + + + T +
Sbjct: 143 LTYHFCTGVRHIIWDETVKGLSISQIESSGKVLLAVVAVLSTIFTFV 189
>sp|Q4UKC1|DHSC_RICFE Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia felis
(strain ATCC VR-1525 / URRWXCal2) GN=sdhC PE=3 SV=1
Length = 124
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 1 ITSVLSITHRGTGVALT-AYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFP 59
I+S LSI HR TGVAL A ++ + L+ N+ + F + + I L +++
Sbjct: 25 ISSTLSILHRMTGVALFFAVSILAWWLILSKYDNNYLQFANCCIIK--ICLVA---VSYA 79
Query: 60 VSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVL 102
YH NGIRHL WD G +IK V TG+ ++ +IL ++L
Sbjct: 80 WFYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVCSILLTMLL 122
>sp|P41085|DHSC_RICPR Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia
prowazekii (strain Madrid E) GN=sdhC PE=3 SV=1
Length = 124
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFI-LAFP 59
I+S LSI HR TGVAL L + + ++ + L L++ ++ + ++
Sbjct: 25 ISSTLSILHRMTGVALFFVVSILVWWLILSKYDN-----NYLQLASCCIIKICLVAFSYS 79
Query: 60 VSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVL 102
YH NGIRHL WD G +IK V TG+ ++ +IL ++L
Sbjct: 80 WCYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVCSILLTMLL 122
>sp|P41956|C560_CAEEL Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
OS=Caenorhabditis elegans GN=mev-1 PE=2 SV=1
Length = 182
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVG---LTTDINSVVSFVDALNLSAPILLAGKFILA 57
+T +LS HR +G + A L + G+G L D + V F+ + NL + K+I+A
Sbjct: 65 LTWMLSGFHRISGCVM-AGTLLVGGIGFAVLPFDFTAFVDFIRSWNLPCAVTAVFKYIIA 123
Query: 58 FPVSYHTANGIRHLIWDTGRAL-TIKKVYTTGYAMLG-AAIL 97
FP+ +HT NGIR L +D + + + ++Y +GY + G +AIL
Sbjct: 124 FPIIFHTLNGIRFLGFDLAKGVNNVGQIYKSGYLVSGLSAIL 165
>sp|P41955|C560_CAEBR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
OS=Caenorhabditis briggsae GN=mev-1 PE=2 SV=1
Length = 184
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 1 ITSVLSITHRGTGVALTAYAL--GLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAF 58
+T +LS HR +G + L GL L D + V ++ NL + K+I+AF
Sbjct: 65 LTWMLSGFHRISGCVMAGTLLVGGLGFAVLPLDFTTFVEYIRGWNLPCAVTAVFKYIIAF 124
Query: 59 PVSYHTANGIRHLIWDTGRAL-TIKKVYTTGYAMLGAAILTNLVLTL 104
P+ +HT NGIR L +D + + I +VY +G+ + G + + L + +
Sbjct: 125 PIIFHTLNGIRFLGFDLAKGVDNIGQVYKSGWLVFGVSAVIALAIVI 171
>sp|Q68XP1|DHSC_RICTY Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) GN=sdhC PE=3 SV=1
Length = 124
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFI-LAFP 59
I+S LSI HR TGVAL L + + ++ + L L+ ++ + ++
Sbjct: 25 ISSTLSILHRMTGVALFFVVSILVWWLILSKYDN-----NYLQLARCCIIKICLVAFSYA 79
Query: 60 VSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVL 102
YH NGIRHL WD G +I+ V TG+ ++ +IL ++L
Sbjct: 80 WCYHLCNGIRHLFWDIGYGFSIRAVNITGWCVVVCSILLTMLL 122
>sp|Q1RHB5|DHSC_RICBR Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia
bellii (strain RML369-C) GN=sdhC PE=3 SV=1
Length = 125
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPV 60
I+S LSI HR TGVAL LA + + +S +++ N I + + +F
Sbjct: 25 ISSTLSILHRMTGVALFFAVSILAWWFILSKFDS--NYIKLANCCCIIKICLI-LTSFAW 81
Query: 61 SYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVL 102
YH NGIRHL WD G +IK V TG++++ ++L ++L
Sbjct: 82 FYHLCNGIRHLFWDIGLGFSIKAVNLTGWSVVICSVLFTILL 123
>sp|P33421|SDH3_YEAST Succinate dehydrogenase [ubiquinone] cytochrome b subunit,
mitochondrial OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SDH3 PE=1 SV=1
Length = 198
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 50 LAGKFILAFPVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLG-AAILTNLVLTL 104
+ G F F + H IRHLIWDT + LT+K VY TGYA++G A+L +LTL
Sbjct: 145 IKGSFAYLFAI--HYGGAIRHLIWDTAKELTLKGVYRTGYALIGFTAVLGTYLLTL 198
>sp|Q92J99|DHSC_RICCN Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=sdhC PE=3
SV=1
Length = 124
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 1 ITSVLSITHRGTGVALT-AYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFP 59
I+S LSI +R TGVAL A ++ + + L+ N+ + + + I L +++
Sbjct: 25 ISSTLSILYRMTGVALFFAVSILVWWLILSKYDNNYLQLAECCIIK--ICLVA---VSYA 79
Query: 60 VSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVL 102
YH NGIRHL WD G +IK V TG+ ++ ++L ++L
Sbjct: 80 WFYHLCNGIRHLFWDIGYGFSIKLVNITGWCVVVGSVLLTVLL 122
>sp|P35721|C560_MARPO Succinate dehydrogenase cytochrome b560 subunit OS=Marchantia
polymorpha GN=SDH3 PE=3 SV=1
Length = 137
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 60 VSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAA 95
+ YH +NG+RHL+WD G L + KVYT+G ML A
Sbjct: 82 LCYHMSNGVRHLLWDLGFFLELSKVYTSGIIMLFCA 117
>sp|Q04487|YM07_YEAST Putative succinate dehydrogenase [ubiquinone] cytochrome b subunit,
mitochondrial OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YMR118C PE=3 SV=1
Length = 196
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 5 LSITHRGTGV--ALTAYALGLAGVGLTTDINSVVSFVD-----ALNLSAPILLAGKFILA 57
LS HR +GV AL YA + +G+TT + +F D + K A
Sbjct: 90 LSSLHRISGVLLALGFYAFTIT-LGVTTIMGMDTTFQDLNKWYHEKMPKWSQWVAKGSAA 148
Query: 58 FPVSYHTANGIRHLIWDTGRALTIKKVYTTG 88
+ ++H NGIRHLIWD G LT + V TG
Sbjct: 149 YLFAFHFGNGIRHLIWDMGYELTNRGVIKTG 179
>sp|P80478|C560_PORPU Succinate dehydrogenase cytochrome b560 subunit OS=Porphyra
purpurea GN=SDH3 PE=3 SV=1
Length = 125
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 2 TSVLSITHRGTGVAL-TAYALGLAGVGLTTDINSVVSFVD-ALNLSAPILLAGKFILAFP 59
+S+ SI HR +GVA+ T A + L T + +D LN S+ IL I++
Sbjct: 20 SSLFSIWHRISGVAMFTLIASPPLFLKLATFSYKSFNILDLMLNNSSLILPWFIVIISVI 79
Query: 60 VSYHTANGIRHLIWDT 75
YH NGIRH +WD+
Sbjct: 80 FLYHIINGIRHFLWDS 95
>sp|P63725|DHSC_SALTY Succinate dehydrogenase cytochrome b556 subunit OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=sdhC PE=3 SV=1
Length = 129
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILA--- 57
IT++ SI HR +GV +T A+G+ L T ++S F A ++ ++ KFI+
Sbjct: 22 ITAIASILHRVSGV-ITFIAVGILLWLLGTSLSSPEGFQQAADIMDGFIV--KFIMWGIL 78
Query: 58 FPVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
++YH GIRH++ D G +++ + G + + +VL+LL
Sbjct: 79 TALAYHVIVGIRHMLMDFG---YLEETFEAGQRSAKISFVITVVLSLL 123
>sp|P63726|DHSC_SALTI Succinate dehydrogenase cytochrome b556 subunit OS=Salmonella typhi
GN=sdhC PE=3 SV=1
Length = 129
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILA--- 57
IT++ SI HR +GV +T A+G+ L T ++S F A ++ ++ KFI+
Sbjct: 22 ITAIASILHRVSGV-ITFIAVGILLWLLGTSLSSPEGFQQAADIMDGFIV--KFIMWGIL 78
Query: 58 FPVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
++YH GIRH++ D G +++ + G + + +VL+LL
Sbjct: 79 TALAYHVIVGIRHMLMDFG---YLEETFEAGQRSAKISFVITVVLSLL 123
>sp|P69054|DHSC_ECOLI Succinate dehydrogenase cytochrome b556 subunit OS=Escherichia coli
(strain K12) GN=sdhC PE=1 SV=1
Length = 129
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 17/112 (15%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAF-- 58
IT++ SI HR +GV +T A+G+ L T ++S F A SA + G F + F
Sbjct: 22 ITAIASILHRVSGV-ITFVAVGILLWLLGTSLSSPEGFEQA---SA---IMGSFFVKFIM 74
Query: 59 -----PVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
++YH GIRH++ D G +++ + G + + +VL+LL
Sbjct: 75 WGILTALAYHVVVGIRHMMMDFG---YLEETFEAGKRSAKISFVITVVLSLL 123
>sp|P69055|DHSC_ECO57 Succinate dehydrogenase cytochrome b556 subunit OS=Escherichia coli
O157:H7 GN=sdhC PE=3 SV=1
Length = 129
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 17/112 (15%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAF-- 58
IT++ SI HR +GV +T A+G+ L T ++S F A SA + G F + F
Sbjct: 22 ITAIASILHRVSGV-ITFVAVGILLWLLGTSLSSPEGFEQA---SA---IMGSFFVKFIM 74
Query: 59 -----PVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
++YH GIRH++ D G +++ + G + + +VL+LL
Sbjct: 75 WGILTALAYHVVVGIRHMMMDFG---YLEETFEAGKRSAKISFVITVVLSLL 123
>sp|P30744|SDHM_ECOLI L-serine dehydratase 2 OS=Escherichia coli (strain K12) GN=sdaB
PE=1 SV=2
Length = 455
Score = 32.3 bits (72), Expect = 0.89, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 5 LSITHRGTGVALTAYALGLAG-VGLTTDINSVVSFVDALNLSAPILLA-GKFILAFPV-- 60
LS+T +G + A +GLAG + T DI+S+ SF+ +N ++LA G+ + FPV
Sbjct: 53 LSLTGKGHHTDI-AIIMGLAGNLPDTVDIDSIPSFIQDVNTHGRLMLANGQHEVEFPVDQ 111
Query: 61 --SYHTANGIRHLIWDTGRALTI----KKVYTTGYAMLGAAILTN 99
++H N H + G +T K VY+ Y +G + +
Sbjct: 112 CMNFHADNLSLH---ENGMRITALAGDKVVYSQTYYSIGGGFIVD 153
>sp|Q59659|DHSC_PARDE Succinate dehydrogenase cytochrome b556 subunit OS=Paracoccus
denitrificans GN=sdhC PE=3 SV=1
Length = 130
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 62 YHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
YH G+RHL +D G L I++ + + A++ +++ VLTL+
Sbjct: 83 YHLLAGLRHLFYDAGYGLEIEQAHKSSQALIAGSVVLA-VLTLI 125
>sp|B2G8T6|GATA_LACRJ Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus
reuteri (strain JCM 1112) GN=gatA PE=3 SV=1
Length = 490
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 44 LSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRALTIKKVYTTGY 89
L+ P+ +AG ++ P + NG+ + G+A + VY TGY
Sbjct: 426 LTVPVNMAGLPAMSIPAGFSAKNGMPVGLQIIGKAFDEQTVYNTGY 471
>sp|A5VLG3|GATA_LACRD Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus
reuteri (strain DSM 20016) GN=gatA PE=3 SV=1
Length = 490
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 44 LSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRALTIKKVYTTGY 89
L+ P+ +AG ++ P + NG+ + G+A + VY TGY
Sbjct: 426 LTVPVNMAGLPAMSIPAGFSAKNGMPVGLQIIGKAFDEQTVYNTGY 471
>sp|Q08717|DHSD_THEAC Succinate dehydrogenase hydrophobic membrane anchor subunit
OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM
1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=sdhD PE=3
SV=1
Length = 123
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 31 DINSVVSFVDAL--NLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRALTIKK 83
D V+F ++ L P LA I + ++YH NG+ H++ DT + K+
Sbjct: 38 DFGHPVAFFSSVINQLHNPWWLAFFLIFVYIITYHGINGLNHIVADTSISEKAKR 92
>sp|Q03PF2|POTA_LACBA Spermidine/putrescine import ATP-binding protein PotA
OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170)
GN=potA PE=3 SV=1
Length = 370
Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 21 LGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGI 68
LG +G G TT + ++ F DA + IL AGK I P + N +
Sbjct: 37 LGPSGCGKTTILRTIAGFTDA--TTGDILFAGKRINDVPANKRNVNTV 82
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,830,725
Number of Sequences: 539616
Number of extensions: 1230743
Number of successful extensions: 4041
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3997
Number of HSP's gapped (non-prelim): 44
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)