Query psy9433
Match_columns 105
No_of_seqs 111 out of 987
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:13:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09487 sdhC succinate dehydr 100.0 4.4E-31 9.5E-36 178.9 13.6 98 1-103 22-125 (129)
2 PLN00127 succinate dehydrogena 100.0 2.7E-30 5.9E-35 182.6 14.0 103 1-105 72-178 (178)
3 cd03499 SQR_TypeC_SdhC Succina 100.0 2.1E-28 4.5E-33 162.6 13.5 98 1-103 14-116 (117)
4 TIGR02970 succ_dehyd_cytB succ 100.0 6.1E-28 1.3E-32 161.4 13.6 99 1-104 16-119 (120)
5 KOG0449|consensus 99.9 5.6E-28 1.2E-32 167.7 8.0 105 1-105 62-168 (168)
6 COG2009 SdhC Succinate dehydro 99.9 2.2E-20 4.9E-25 126.8 12.9 101 1-102 16-122 (132)
7 cd03501 SQR_TypeA_SdhC_like Su 99.8 5.3E-18 1.2E-22 109.7 13.0 95 3-103 1-100 (101)
8 cd03493 SQR_QFR_TM Succinate:q 99.8 4.5E-18 9.7E-23 107.2 11.5 92 7-103 1-97 (98)
9 PF01127 Sdh_cyt: Succinate de 99.7 1.5E-16 3.3E-21 104.9 13.6 95 2-101 19-120 (121)
10 TIGR02968 succ_dehyd_anc succi 99.7 3.9E-16 8.5E-21 102.0 13.0 86 5-95 7-95 (105)
11 cd03500 SQR_TypeA_SdhD_like Su 99.6 3.2E-13 6.9E-18 88.1 13.1 75 3-82 2-82 (106)
12 PLN00130 succinate dehydrogena 99.4 6.3E-13 1.4E-17 94.2 8.1 69 1-72 138-211 (213)
13 cd03494 SQR_TypeC_SdhD Succina 99.4 8E-12 1.7E-16 81.1 11.9 71 7-82 3-76 (99)
14 COG2142 SdhD Succinate dehydro 99.2 1E-09 2.2E-14 73.3 11.8 77 6-87 17-96 (117)
15 cd03495 SQR_TypeC_SdhD_like Su 99.1 7.9E-09 1.7E-13 67.1 13.1 76 6-86 3-81 (100)
16 cd03497 SQR_TypeB_1_TM Succina 98.7 6.2E-07 1.3E-11 65.0 13.0 93 3-100 90-198 (207)
17 PRK09488 sdhD succinate dehydr 98.7 8E-07 1.7E-11 59.2 11.2 72 6-82 16-90 (115)
18 cd03498 SQR_TypeB_2_TM Succina 98.1 8.4E-05 1.8E-09 53.8 11.8 92 3-100 90-196 (209)
19 cd03526 SQR_QFR_TypeB_TM Succi 97.6 0.0043 9.3E-08 44.8 13.4 71 3-78 89-166 (199)
20 PLN00126 succinate dehydrogena 97.6 5E-05 1.1E-09 50.6 2.4 20 1-20 95-114 (129)
21 cd00581 QFR_TypeB_TM Quinol:fu 97.4 0.012 2.6E-07 42.7 13.0 94 3-101 98-197 (206)
22 TIGR02046 sdhC_b558_fam succin 97.3 0.0096 2.1E-07 43.4 11.3 72 3-79 94-180 (214)
23 cd00581 QFR_TypeB_TM Quinol:fu 97.0 0.025 5.3E-07 41.1 11.5 63 7-69 3-74 (206)
24 cd03497 SQR_TypeB_1_TM Succina 96.8 0.012 2.7E-07 42.6 8.6 61 6-70 7-74 (207)
25 cd03526 SQR_QFR_TypeB_TM Succi 96.8 0.017 3.6E-07 41.7 8.9 64 7-73 3-71 (199)
26 cd03498 SQR_TypeB_2_TM Succina 96.5 0.017 3.7E-07 41.8 7.6 61 11-74 7-72 (209)
27 PRK13554 fumarate reductase cy 96.5 0.033 7.2E-07 41.5 9.1 69 3-71 22-101 (241)
28 PRK13553 fumarate reductase cy 96.0 0.075 1.6E-06 40.0 8.8 64 5-77 123-194 (258)
29 TIGR02046 sdhC_b558_fam succin 96.0 0.086 1.9E-06 38.4 8.9 65 7-74 7-76 (214)
30 PRK13553 fumarate reductase cy 96.0 0.091 2E-06 39.6 9.0 67 3-69 22-97 (258)
31 PRK13554 fumarate reductase cy 95.6 0.2 4.3E-06 37.3 9.5 75 8-91 128-209 (241)
32 PRK04987 fumarate reductase su 94.7 0.86 1.9E-05 31.0 11.7 93 7-104 27-129 (130)
33 PF02313 Fumarate_red_D: Fumar 93.9 1.1 2.4E-05 30.0 8.8 45 30-79 49-93 (118)
34 PF02300 Fumarate_red_C: Fumar 91.5 3.2 6.9E-05 28.2 10.5 91 8-103 27-127 (129)
35 cd00547 QFR_TypeD_subunitD Qui 90.8 3.5 7.5E-05 27.5 8.2 44 29-77 44-87 (115)
36 cd00546 QFR_TypeD_subunitC Qui 89.2 5.2 0.00011 27.0 12.1 90 7-101 23-122 (124)
37 PRK05470 fumarate reductase su 89.0 3.6 7.9E-05 27.5 7.0 45 30-79 49-93 (118)
38 cd03496 SQR_TypeC_CybS SQR cat 83.8 9.4 0.0002 24.7 7.0 52 6-77 7-59 (104)
39 PRK13603 fumarate reductase su 82.2 13 0.00028 25.2 12.0 84 7-95 23-116 (126)
40 PF07950 DUF1691: Protein of u 81.9 3.6 7.8E-05 26.7 4.4 44 29-75 24-67 (110)
41 COG3029 FrdC Fumarate reductas 52.0 36 0.00077 23.0 4.1 68 21-98 44-122 (129)
42 COG3080 FrdD Fumarate reductas 51.6 70 0.0015 21.3 6.4 41 33-78 52-92 (118)
43 TIGR00964 secE_bact preprotein 51.4 31 0.00068 19.5 3.4 27 78-104 17-43 (55)
44 PRK07597 secE preprotein trans 48.4 34 0.00075 19.8 3.4 27 78-104 26-52 (64)
45 PF00584 SecE: SecE/Sec61-gamm 45.0 52 0.0011 18.5 3.7 27 78-104 18-44 (57)
46 PLN00131 hypothetical protein; 43.6 14 0.0003 26.3 1.3 12 1-12 18-29 (218)
47 PRK05740 secE preprotein trans 36.5 1.1E+02 0.0023 19.3 4.4 27 78-104 52-78 (92)
48 PF05328 CybS: CybS; InterPro 35.0 1.4E+02 0.0031 20.1 7.1 47 51-97 61-108 (132)
49 TIGR02848 spore_III_AC stage I 33.8 1.1E+02 0.0023 18.3 8.3 58 6-72 4-62 (64)
50 PF14715 FixP_N: N-terminal do 33.7 29 0.00063 19.7 1.3 32 30-63 8-39 (51)
51 PHA02844 putative transmembran 32.7 1.2E+02 0.0027 18.6 5.2 49 21-69 9-73 (75)
52 COG4736 CcoQ Cbb3-type cytochr 32.3 1.1E+02 0.0024 18.0 4.3 31 31-67 2-32 (60)
53 PF13795 HupE_UreJ_2: HupE / U 28.0 1.9E+02 0.0041 20.1 4.9 34 62-95 7-42 (151)
54 COG0690 SecE Preprotein transl 26.4 1.4E+02 0.003 17.9 3.6 27 78-104 36-62 (73)
55 PHA02819 hypothetical protein; 24.4 73 0.0016 19.4 2.0 12 27-38 15-26 (71)
56 PF11119 DUF2633: Protein of u 21.8 1.9E+02 0.004 17.0 3.7 22 49-70 13-35 (59)
57 PF12051 DUF3533: Protein of u 21.8 1.4E+02 0.003 23.3 3.7 43 50-93 337-380 (382)
58 PF12575 DUF3753: Protein of u 20.1 1E+02 0.0022 18.9 2.1 31 66-96 25-55 (72)
No 1
>PRK09487 sdhC succinate dehydrogenase cytochrome b556 large membrane subunit; Provisional
Probab=99.97 E-value=4.4e-31 Score=178.87 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=86.6
Q ss_pred ChHHHHHHHHHHHHHHHHH-H---HHHHh-hcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 1 ITSVLSITHRGTGVALTAY-A---LGLAG-VGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDT 75 (105)
Q Consensus 1 it~~~SI~HRiTGv~L~~~-~---~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~ 75 (105)
+||++||+||+||++|+++ . +.+.. +.+|+.|+.+.+..++ +++|+++++++++++||++|||||++||.
T Consensus 22 ~t~~~SIlHRiSGv~L~~~~~~~~~~l~~~~~~p~~f~~~~~~~~~-----~~~k~~~~~~~~al~yH~~nGIRHL~wD~ 96 (129)
T PRK09487 22 ITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQAAAIMDS-----FFVKFIMWGILTALAYHVVVGIRHLLMDF 96 (129)
T ss_pred hhHHHHHHHHhHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHhhHHHHHHHc
Confidence 5899999999999999987 2 33332 4799999999876655 48899999999999999999999999999
Q ss_pred ccccc-HHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 76 GRALT-IKKVYTTGYAMLGAAILTNLVLT 103 (105)
Q Consensus 76 g~g~~-~~~~~~~~~~v~~~s~v~t~~~~ 103 (105)
|+|+| +|+.+++++.+++++++++++.+
T Consensus 97 g~g~~~~~~~~~sa~~v~~~s~vlt~~~g 125 (129)
T PRK09487 97 GYLEETLEAGKRSAKISFVITVVLSLLAG 125 (129)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999998764
No 2
>PLN00127 succinate dehydrogenase (ubiquinone) cytochrome b subunit; Provisional
Probab=99.97 E-value=2.7e-30 Score=182.57 Aligned_cols=103 Identities=31% Similarity=0.513 Sum_probs=88.8
Q ss_pred ChHHHHHHHHHHHHHHHHH--HHH-HHhhcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Q psy9433 1 ITSVLSITHRGTGVALTAY--ALG-LAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDT-G 76 (105)
Q Consensus 1 it~~~SI~HRiTGv~L~~~--~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~-g 76 (105)
+||++||+|||||++|+++ +.+ ...+.+|++|+.+.+.+.+. ++++.+.+|++++++++||++||+|||+||. |
T Consensus 72 ltai~SIlHRITGv~L~~g~~~~~l~~l~~~~e~f~~~~~~~~s~--~~~~~~~~kf~~~~a~~YH~lnGIRHLiWD~~g 149 (178)
T PLN00127 72 VVALSSITNRVTGCVLSGGAAGGGVLALVGGSEAVPATMEGFKSG--GPLIVFPAKFAVSFPFVYHTLGGLRHLVWDKTT 149 (178)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccC
Confidence 5899999999999999998 222 23356899998887766654 4556788999999999999999999999995 9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy9433 77 RALTIKKVYTTGYAMLGAAILTNLVLTLL 105 (105)
Q Consensus 77 ~g~~~~~~~~~~~~v~~~s~v~t~~~~~~ 105 (105)
+|+|++++++++|+++++|++++++++++
T Consensus 150 ~G~~l~~~~~s~~~vl~~s~vltl~~~~~ 178 (178)
T PLN00127 150 EGLDNPSVEASSYGLFGASAALSAAAAVL 178 (178)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998864
No 3
>cd03499 SQR_TypeC_SdhC Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this family reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Proteins in this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. The heme and quinone binding sites reside in the transmembrane subunits. The SdhC or CybL protein is one of the two transmembrane subunits of bacterial and eukaryotic SQRs. The two-electron oxidation of succinate in the flavoprotein a
Probab=99.96 E-value=2.1e-28 Score=162.58 Aligned_cols=98 Identities=39% Similarity=0.560 Sum_probs=85.5
Q ss_pred ChHHHHHHHHHHHHHHHHH-HHHHHh----hcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 1 ITSVLSITHRGTGVALTAY-ALGLAG----VGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDT 75 (105)
Q Consensus 1 it~~~SI~HRiTGv~L~~~-~~~l~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~ 75 (105)
+||++||+||+||++|+++ .+.... ..+|++|+.+.+...+ +..+.++++.+++++||.+||+||++||+
T Consensus 14 ~~~~~Si~hRiSGv~L~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~-----~~~~~~~~~~~~~~~yH~~nGiRhll~D~ 88 (117)
T cd03499 14 LTAILSILHRITGVALFLGLPLLLWWLLASLSSPESFESVSALLGS-----WLGKLVLFGLTWALFYHLLNGIRHLIWDL 88 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHhhHHHHHHHc
Confidence 4899999999999999998 222211 3489999998876543 47899999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 76 GRALTIKKVYTTGYAMLGAAILTNLVLT 103 (105)
Q Consensus 76 g~g~~~~~~~~~~~~v~~~s~v~t~~~~ 103 (105)
|+++|+|+.+++++++++++++++++.+
T Consensus 89 g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (117)
T cd03499 89 GKGLELKTVYKSGYAVLVLSVVLTVLLG 116 (117)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875
No 4
>TIGR02970 succ_dehyd_cytB succinate dehydrogenase, cytochrome b556 subunit. In E. coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase, a TCA cycle enzyme, are SdhC and SdhD. This family is the SdhC, the cytochrome b subunit, called b556 in bacteria and b560 in mitochondria. SdhD (see TIGR02968) is called the hydrophobic membrane anchor subunit, although both SdhC and SdhD participate in anchoring the complex. In some bacteria, this cytochrome b subunit is replaced my a member of the cytochrome b558 family (see TIGR02046).
Probab=99.96 E-value=6.1e-28 Score=161.36 Aligned_cols=99 Identities=28% Similarity=0.433 Sum_probs=86.2
Q ss_pred ChHHHHHHHHHHHHHHHHH-H---HHHHh-hcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 1 ITSVLSITHRGTGVALTAY-A---LGLAG-VGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDT 75 (105)
Q Consensus 1 it~~~SI~HRiTGv~L~~~-~---~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~ 75 (105)
+||++||+|||||++++++ . +.+.. ..+|++|+.+.+..++ ++.+.+++++.++++||.+||+||++||.
T Consensus 16 ~~~~~silhRiTGv~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~yH~~nGiRhl~~D~ 90 (120)
T TIGR02970 16 ITAILSILHRITGVLLFFGLPFLLWWLSLSLSSPESFATVHALLSS-----PLGKLILWGLLWALLYHLLAGIRHLLWDL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHc
Confidence 4799999999999999998 2 22222 4688999998876554 37789999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 76 GRALTIKKVYTTGYAMLGAAILTNLVLTL 104 (105)
Q Consensus 76 g~g~~~~~~~~~~~~v~~~s~v~t~~~~~ 104 (105)
|+|+|+|+.+++++++++++++++++.+.
T Consensus 91 g~g~~~~~~~~~~~~~~~l~~~~~~~~~~ 119 (120)
T TIGR02970 91 GYGLELKSARISAWVVLVLSLVLTILAGI 119 (120)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764
No 5
>KOG0449|consensus
Probab=99.95 E-value=5.6e-28 Score=167.72 Aligned_cols=105 Identities=46% Similarity=0.717 Sum_probs=94.8
Q ss_pred ChHHHHHHHHHHHHHHHHH--HHHHHhhcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9433 1 ITSVLSITHRGTGVALTAY--ALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRA 78 (105)
Q Consensus 1 it~~~SI~HRiTGv~L~~~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g 78 (105)
+||.+|++|||||++|+++ +++...+.++.+.+...+.+++..+|++..-.+|+..++++.||..|||||++||.||+
T Consensus 62 Lt~~LS~~hRiSG~~la~gv~~~G~~~l~~~g~~~~~v~~~~~~~~~~~~~~~~K~~iayp~a~Ht~ngiRHLiwd~~k~ 141 (168)
T KOG0449|consen 62 LTWMLSIFHRISGVVLAGGVWLVGVSGLLGMGDITATVSKVYQLKLPTAVQWPAKFSIAYPFAYHTGNGIRHLIWDLGKE 141 (168)
T ss_pred HHHHHHHHHhhhhheehhhHHHHHHHHHhcCcchHHHHHHHHHhccchhHHhhHHHHHHHHHHHHHhcchhhhhhhhccc
Confidence 4899999999999999998 56666677777888888888888789888888899999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy9433 79 LTIKKVYTTGYAMLGAAILTNLVLTLL 105 (105)
Q Consensus 79 ~~~~~~~~~~~~v~~~s~v~t~~~~~~ 105 (105)
+++|++|++||++++++++++..++++
T Consensus 142 L~i~~vY~tGy~v~alt~vls~~l~~~ 168 (168)
T KOG0449|consen 142 LTIKGVYKTGYAVLALTVVLSAYLAAL 168 (168)
T ss_pred ccccceeeechhHHHHHHHHHHHHhhC
Confidence 999999999999999999999988764
No 6
>COG2009 SdhC Succinate dehydrogenase/fumarate reductase, cytochrome b subunit [Energy production and conversion]
Probab=99.85 E-value=2.2e-20 Score=126.81 Aligned_cols=101 Identities=37% Similarity=0.468 Sum_probs=76.1
Q ss_pred ChHHHHHHHHHHHHHHHHH----HHHHH-hhcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 1 ITSVLSITHRGTGVALTAY----ALGLA-GVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDT 75 (105)
Q Consensus 1 it~~~SI~HRiTGv~L~~~----~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~ 75 (105)
+++.+|++||+||+++.++ .+... ++.+++.++...+.+++. .++++.++.++++++++.||.+|||||++||.
T Consensus 16 ~~~~~silHRitGv~l~~Fl~~hil~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~H~~nGIR~l~~d~ 94 (132)
T COG2009 16 ITMYASILHRISGVILAFFLFVHILLASSWLAGSASFNAAFEFYHAL-LGSFIVKLVLLGLVLALLYHGLNGIRHLLWDF 94 (132)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999632 11111 334555555555544432 25668899999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHHHHH-HHHH
Q psy9433 76 GRALTIKKVYTTGYAMLGAAILT-NLVL 102 (105)
Q Consensus 76 g~g~~~~~~~~~~~~v~~~s~v~-t~~~ 102 (105)
|++++.++.+++++..+..+.+. ++..
T Consensus 95 g~~~~~~~~~~~~~~~~~~~~v~~~~l~ 122 (132)
T COG2009 95 GYGLELKGVGYTGAALVFFSAVTLTLLL 122 (132)
T ss_pred HhhhcchhhhhhHHHHHHHHHHHHHHHH
Confidence 99999888888888888877766 4443
No 7
>cd03501 SQR_TypeA_SdhC_like Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase C (SdhC)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacteria
Probab=99.79 E-value=5.3e-18 Score=109.66 Aligned_cols=95 Identities=25% Similarity=0.259 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHH---HHh-hcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy9433 3 SVLSITHRGTGVALTAY-ALG---LAG-VGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGR 77 (105)
Q Consensus 3 ~~~SI~HRiTGv~L~~~-~~~---l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~ 77 (105)
+++.++||+||+++.++ ++- ... ..+|++|+.+.+.++++ +.+.++.+...++.||..||+||++||.|+
T Consensus 1 ~~~~~lhRitGi~L~~fl~~hl~~~~~~~~~~~~y~~~~~~~~~p-----~~~~~~~l~~~~~~~H~~~Gir~~~~d~g~ 75 (101)
T cd03501 1 MWAWVLHRITGVVILFYLFLHVLDLSSLRRGPETYNAVIATYKSP-----IFKLGEFGLVAAVVFHALNGIRLILVDFGS 75 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHCh-----HHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 46889999999999988 322 222 35789999988776653 678899999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 78 ALTIKKVYTTGYAMLGAAILTNLVLT 103 (105)
Q Consensus 78 g~~~~~~~~~~~~v~~~s~v~t~~~~ 103 (105)
+.++ ..++..+.+.+.+++++++..
T Consensus 76 ~~~~-~~~~~~~~~~~~~vv~~~~~~ 100 (101)
T cd03501 76 GGPR-YQRQLFYIVLVLTVVLIVAAG 100 (101)
T ss_pred cchH-HHHHHHHHHHHHHHHHHHHhc
Confidence 8765 568888999999998887643
No 8
>cd03493 SQR_QFR_TM Succinate:quinone oxidoreductase (SQR) and Quinol:fumarate reductase (QFR) family, transmembrane subunits; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol, while QFR catalyzes the reverse reaction. SQR, also called succinate dehydrogenase or Complex II, is part of the citric acid cycle and the aerobic respiratory chain, while QFR is involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQRs may reduce either high or low potential quinones while QFRs oxidize only low potential quinols. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit(s) containing the electron donor/acceptor (quinol or quinone). The reversible reduction of
Probab=99.78 E-value=4.5e-18 Score=107.25 Aligned_cols=92 Identities=39% Similarity=0.634 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHH-HHHH---Hh-hcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Q psy9433 7 ITHRGTGVALTAY-ALGL---AG-VGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRALTI 81 (105)
Q Consensus 7 I~HRiTGv~L~~~-~~~l---~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g~~~ 81 (105)
++||+||+++.++ .+-+ .. ..++++++.+.+..++ +..+.++....+++.||..||+||++||++++.++
T Consensus 1 ~~~Ritgv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~H~~~Gir~i~~D~~~~~~~ 75 (98)
T cd03493 1 ILHRITGVALLLFLPLHLLGLLALLGGPYAFAEVVAFLSS-----PLGKLLYLLLLLALLYHALNGIRHLIWDYGKGLEL 75 (98)
T ss_pred CeehhhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHccccCCH
Confidence 4799999999998 3222 22 2456666566655544 47789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9433 82 KKVYTTGYAMLGAAILTNLVLT 103 (105)
Q Consensus 82 ~~~~~~~~~v~~~s~v~t~~~~ 103 (105)
++.+++++.+.+.+.+.++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ 97 (98)
T cd03493 76 KLRKALGYAVLALSVLLTVLLL 97 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887654
No 9
>PF01127 Sdh_cyt: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; InterPro: IPR000701 This entry includes the transmembrane subunit from both succinate dehydrogenase and fumarate reductase complexes. Fumarate reductase couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, in a reaction opposite to that catalysed by the related complex II of the respiratory chain (succinate dehydrogenase) []. Three protein subunits contain the fumarate reductase complex. Subunit A contains the site of fumarate reduction and a covalently bound flavin adenine dinucleotide prosthetic group. Subunit B contains three iron-sulphur centres. The menaquinol-oxidizing subunit C consists of five membrane-spanning, primarily helical segments and binds two haem b molecules []. Succinate dehydrogenase (SDH) is a membrane-bound complex of two main components: a membrane-extrinsic component composed of an FAD-binding flavoprotein and an iron-sulphur protein, and a hydrophobic component composed of a cytochrome b and a membrane anchor protein. The cytochrome b component is a mono-haem transmembrane protein [, , ] belonging to a family that includes: Cytochrome b-556 from bacterial SDH (gene sdhC). Cytochrome b560 from the mammalian mitochondrial SDH complex, which is encoded in the mitochondrial genome of some algae and in the plant Marchantia polymorpha. Cytochrome b from yeast mitochondrial SDH complex (gene SDH3 or CYB3). Protein cyt-1 from Caenorhabditis elegans. These cytochromes are proteins of about 130 residues that comprise three transmembrane regions. There are two conserved histidines which may be involved in binding the haem group.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors; PDB: 2WDQ_H 1NEN_D 2WP9_L 2WDV_H 2ACZ_D 2WS3_L 2WU2_H 2WDR_D 2WU5_H 1NEK_D ....
Probab=99.74 E-value=1.5e-16 Score=104.91 Aligned_cols=95 Identities=27% Similarity=0.373 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHHH-H-HHH---HHh--hcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 2 TSVLSITHRGTGVALTA-Y-ALG---LAG--VGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWD 74 (105)
Q Consensus 2 t~~~SI~HRiTGv~L~~-~-~~~---l~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD 74 (105)
.+..|++||+||++|.+ . .+. +.. ..+|++|+.+.+.++++ +..+..+++.++++||..||+||+++|
T Consensus 19 ~~~~~~~qRiTgi~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~H~~~Gir~il~D 93 (121)
T PF01127_consen 19 GTWAWILQRITGIILLLLFLHLHIWFLLSALGGGPISYDEVVAFFSSP-----FWAILYFLLLVAFFFHALNGIRHILED 93 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCHhhHHHHHHHhCCH-----HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 46789999999999998 4 222 112 35788999998776653 566777999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHHHHHHHHHH
Q psy9433 75 TGRALTIKKVYTTGYAMLGAAILTNLV 101 (105)
Q Consensus 75 ~g~g~~~~~~~~~~~~v~~~s~v~t~~ 101 (105)
.|.+.++++.++.++.+++.+++++++
T Consensus 94 ~g~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (121)
T PF01127_consen 94 WGIGLSPKNRRRSGLLILAISVILVIV 120 (121)
T ss_dssp TTTS-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHH
Confidence 999888888889999888888877765
No 10
>TIGR02968 succ_dehyd_anc succinate dehydrogenase, hydrophobic membrane anchor protein. In E. coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase, a TCA cycle enzyme, are SdhC and SdhD. This family is the SdhD, the hydrophobic membrane anchor protein. SdhC is apocytochrome b558, which also plays a role in anchoring the complex.
Probab=99.72 E-value=3.9e-16 Score=101.96 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHh-h-cChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Q psy9433 5 LSITHRGTGVALTAY-ALGLAG-V-GLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRALTI 81 (105)
Q Consensus 5 ~SI~HRiTGv~L~~~-~~~l~~-l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g~~~ 81 (105)
..+.||+||++|... ++.+.. . .++++|+.+.+.++++ +.+...+.++++..||+.||+||++||++++.+.
T Consensus 7 ~w~~~RiSgv~L~~l~~~~~~~~~~~~~~~y~~~~~~~~~~-----~~~i~~~l~~~~~~~H~~~Glr~ii~Dy~~~~~~ 81 (105)
T TIGR02968 7 DWLLQRVTAVVLALYTIFLIGFLLALPGLTYEAWRALFAHP-----WMKIFTLLALLALLYHAWIGMRVVLEDYVKPEGL 81 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCh-----HHHHHHHHHHHHHHHHHHHhHHHHHHHHccchHH
Confidence 568999999999887 444433 2 4556899998776654 6788999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHH
Q psy9433 82 KKVYTTGYAMLGAA 95 (105)
Q Consensus 82 ~~~~~~~~~v~~~s 95 (105)
+..-......+...
T Consensus 82 r~~l~~~~~~~~~~ 95 (105)
T TIGR02968 82 RLVLQVLIILFLVA 95 (105)
T ss_pred HHHHHHHHHHHHHH
Confidence 76555544443333
No 11
>cd03500 SQR_TypeA_SdhD_like Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase D (SdhD)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacterial
Probab=99.55 E-value=3.2e-13 Score=88.06 Aligned_cols=75 Identities=23% Similarity=0.201 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHH---h-h-cChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9433 3 SVLSITHRGTGVALTAY-ALGLA---G-V-GLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTG 76 (105)
Q Consensus 3 ~~~SI~HRiTGv~L~~~-~~~l~---~-l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g 76 (105)
+...++||+||++|.++ ++-+. . . ..|++|+...+.++++ ..+.+...+..+..||..||+|+++.|++
T Consensus 2 ~~~w~~qRiTgv~L~~~l~~hi~~~~~~~~~~~~~~~~~~~~~~~p-----~~~i~~~lll~~~~~H~~~Glr~il~Dy~ 76 (106)
T cd03500 2 SLAWLFQRITGVFLVFLLAGHFWVQHMDNGGDVIDFAFVANRLASP-----LWKVWDLLLLVLALLHGGNGLRNILLDYV 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHcCh-----HHHHHHHHHHHHHHHHHHHhHHHHHHHHc
Confidence 56789999999999998 43333 2 2 3678999998876653 56788899999999999999999999999
Q ss_pred ccccHH
Q psy9433 77 RALTIK 82 (105)
Q Consensus 77 ~g~~~~ 82 (105)
++.+.+
T Consensus 77 ~~~~~r 82 (106)
T cd03500 77 RRPRLR 82 (106)
T ss_pred cCchHH
Confidence 875533
No 12
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=99.43 E-value=6.3e-13 Score=94.20 Aligned_cols=69 Identities=26% Similarity=0.200 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHHHHHHHHH--HHHHHhh---cChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 1 ITSVLSITHRGTGVALTAY--ALGLAGV---GLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLI 72 (105)
Q Consensus 1 it~~~SI~HRiTGv~L~~~--~~~l~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~ 72 (105)
+||++||+|||||++|+.+ .+++..+ ..+.+|+.+.+++.-. +. +..++.-....+++||++||+|||.
T Consensus 138 LTs~lSI~HRITGvaLsg~ly~f~la~lK~G~i~~t~~~FyQf~fys--sk-l~~~~~~itaLA~~YHl~~gvrhLl 211 (213)
T PLN00130 138 MNSMLSIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFYQVLYHT--QQ-QLPVITSVTALAAIYHTIKSTHSLL 211 (213)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 5899999999999999998 4455554 3345666666543211 22 3344555678999999999999996
No 13
>cd03494 SQR_TypeC_SdhD Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. E. coli SQR, a member of this subfamily, reduces the high potential quinine, ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. SdhD and SdhC are the two transmembrane proteins of bacterial SQRs. They contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD an
Probab=99.42 E-value=8e-12 Score=81.13 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHH-HHHHHh--hcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Q psy9433 7 ITHRGTGVALTAY-ALGLAG--VGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRALTIK 82 (105)
Q Consensus 7 I~HRiTGv~L~~~-~~~l~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g~~~~ 82 (105)
..||+||+++..+ ++.+.. ..++++|+.+.+.+.++ +.+........+..||+..|+||++.|+-++...|
T Consensus 3 ~~qRiSav~L~~l~~~~v~~~~~~~~~~y~~~~~~~~~p-----~~~i~~~l~~~~~~~H~~~Glr~vi~DYv~~~~lr 76 (99)
T cd03494 3 LVQRVTAVIMALYTIFLVGFLLASPPLTYEAWSGLFSSL-----WMKIFTLLALLALLLHAWIGLWDILTDYVKPAGLR 76 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 6899999999998 444433 35778999999876654 77899999999999999999999999997765443
No 14
>COG2142 SdhD Succinate dehydrogenase, hydrophobic anchor subunit [Energy production and conversion]
Probab=99.18 E-value=1e-09 Score=73.29 Aligned_cols=77 Identities=21% Similarity=0.187 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHhh--cChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Q psy9433 6 SITHRGTGVALTAY-ALGLAGV--GLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRALTIK 82 (105)
Q Consensus 6 SI~HRiTGv~L~~~-~~~l~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g~~~~ 82 (105)
.+++|+||++|.++ .+.++.. ..+.+|+.+.+.+.+ |+.+.+..+.+++..||..||+|+.+-|+-++...+
T Consensus 17 ~l~qRvTav~Lv~l~~~~l~~~l~~~~~~y~~~~~~~s~-----p~~~v~~lL~l~~~l~H~~~Glr~Ii~DYi~~~~~r 91 (117)
T COG2142 17 WLLQRVTAVILVLLVIWHLYFLLTWLNATYAAWVAFLAN-----PFWKVFLLLLLVAALIHAWNGLRVIIEDYIKPEKLR 91 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH
Confidence 57899999999999 5555542 346678888766555 478899999999999999999999999998887665
Q ss_pred HHHHH
Q psy9433 83 KVYTT 87 (105)
Q Consensus 83 ~~~~~ 87 (105)
..-+.
T Consensus 92 ~~l~~ 96 (117)
T COG2142 92 LALQI 96 (117)
T ss_pred HHHHH
Confidence 44333
No 15
>cd03495 SQR_TypeC_SdhD_like Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit-like; composed of predominantly uncharacterized bacterial proteins with similarity to the E. coli SdhD subunit. One characterized protein is the respiratory Complex II SdhD subunit of the only eukaryotic member, Reclinomonas americana. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. It is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. E. coli SQR is classified as Type C SQRs because it contains two transmembrane subunits and one heme group. The SdhD and SdhC subunits are membrane anchor subunits containing heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is
Probab=99.10 E-value=7.9e-09 Score=67.14 Aligned_cols=76 Identities=18% Similarity=0.115 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHhh--cChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Q psy9433 6 SITHRGTGVALTAY-ALGLAGV--GLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRALTIK 82 (105)
Q Consensus 6 SI~HRiTGv~L~~~-~~~l~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g~~~~ 82 (105)
.+.+|+||++|... ++.+... ..+.+|+.+.+.++++ +.+........+..+|+.+|+|..+-|+-++...+
T Consensus 3 W~~qRvTav~L~~l~~~~v~~~~~~~~~~y~~~~~~~~~p-----~~~i~~~l~l~~~~~H~~~Gm~~IieDYV~~~~~R 77 (100)
T cd03495 3 WWAQRVTAVALVPLVLWFVFSVALLLGASYAEVVAWLAHP-----FNAILLILTLVSAFYHARLGMQVVIEDYVHSEGLR 77 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHhCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 36799999999998 4444432 4567899999887765 66888899999999999999999999998876655
Q ss_pred HHHH
Q psy9433 83 KVYT 86 (105)
Q Consensus 83 ~~~~ 86 (105)
..-.
T Consensus 78 ~~l~ 81 (100)
T cd03495 78 LALI 81 (100)
T ss_pred HHHH
Confidence 4333
No 16
>cd03497 SQR_TypeB_1_TM Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Bacillus subtilis SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside on the transmembrane subunit. The transmembrane subunit of Bacillus subtilis SQR is also called Sdh cytochrome b558 subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers,
Probab=98.73 E-value=6.2e-07 Score=65.00 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHH-H---HHHHhh-c-----------ChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Q psy9433 3 SVLSITHRGTGVALTAY-A---LGLAGV-G-----------LTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTAN 66 (105)
Q Consensus 3 ~~~SI~HRiTGv~L~~~-~---~~l~~l-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~n 66 (105)
..+|-.||+||+++.++ . +-.... . +++.|+...+.+++ +....+......++.||..|
T Consensus 90 ~~a~~~mritG~ill~Fli~Hl~~~~~~~~~~~~~~~~~~~~~~~y~~v~~~f~~-----~~~~~~Yvv~~~al~~Hl~h 164 (207)
T cd03497 90 NWMYTLQRITGIILLVFIAWHVWHTRFAEALGHVDIQTPEAGEANLSAMRNALAS-----PLMLIFYIIGVLAAVFHFAN 164 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHhc-----HHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999988 2 222221 1 12456666665544 35667888999999999999
Q ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Q psy9433 67 GIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNL 100 (105)
Q Consensus 67 GiRHl~wD~g~g~~~~~~~~~~~~v~~~s~v~t~ 100 (105)
|+|-...|.|...+++..++..+...++++++..
T Consensus 165 Gl~s~~~t~G~~~~~r~~~~~~~~~~~~~~vl~~ 198 (207)
T cd03497 165 GLWTFLITWGITVSPRSQRVSTYVCLLVFVVVSF 198 (207)
T ss_pred HHHHHHHHcCcccChhHHHHHHHHHHHHHHHHHH
Confidence 9999999999755555545555555555554443
No 17
>PRK09488 sdhD succinate dehydrogenase cytochrome b556 small membrane subunit; Provisional
Probab=98.67 E-value=8e-07 Score=59.19 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHh-h-cChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Q psy9433 6 SITHRGTGVALTAY-ALGLAG-V-GLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRALTIK 82 (105)
Q Consensus 6 SI~HRiTGv~L~~~-~~~l~~-l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g~~~~ 82 (105)
.+.+|+|++++..+ ++.+.. . ..+.||+.+.+.+.++ +.+.+......+.+||+..|+|..+-|+-++...+
T Consensus 16 w~~QRvTAv~l~~l~~~~v~~~~~~~g~~y~~~~~~f~~p-----~~ai~~ll~l~~~~~H~~iGmq~VieDYV~~~~lR 90 (115)
T PRK09488 16 FILVRATAIVLTLYIIYMVGFFATSGELTYEVWRGFFASA-----FTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALR 90 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCh-----HHHHHHHHHHHHHHHHHHHcchHHHHHccCchHHH
Confidence 46799999999998 444444 2 3456899999886654 66888899999999999999999999998865443
No 18
>cd03498 SQR_TypeB_2_TM Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. C. glutamicum SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside in the transmembrane subunit. The transmembrane subunit of members of this subfamily is also called Sdh cytochrome b558 subunit based on the Bacillus subtilis protein. The structural arrangem
Probab=98.14 E-value=8.4e-05 Score=53.83 Aligned_cols=92 Identities=16% Similarity=0.036 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHh---h-cC----------hhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 3 SVLSITHRGTGVALTAY-ALGLAG---V-GL----------TTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANG 67 (105)
Q Consensus 3 ~~~SI~HRiTGv~L~~~-~~~l~~---l-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nG 67 (105)
.+.|-.+|+||+++.++ .+=+.. . .. ++.|+...+.+++ |+...+-.....++.+|..+|
T Consensus 90 t~~~~~m~itG~vll~Fiv~Hl~~~~~~~~~~~~~~~~~~~~~~y~~v~~~f~~-----p~~~~~Yvv~~~al~~Hl~hG 164 (209)
T cd03498 90 SLASRTMIWSGLIILLFIILHLLDFTFGVVGPVSPPMGVGRGDVYELLVASFQQ-----PWIAALYVLAMVALGLHLSHG 164 (209)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccchHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999998887 322222 1 11 2455555554443 355567788899999999999
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Q psy9433 68 IRHLIWDTGRALTIKKVYTTGYAMLGAAILTNL 100 (105)
Q Consensus 68 iRHl~wD~g~g~~~~~~~~~~~~v~~~s~v~t~ 100 (105)
++-...+.|.. +++..++..+...+.++++.+
T Consensus 165 l~s~~~t~G~~-~~~~~~~~~~~~~~~~~~i~~ 196 (209)
T cd03498 165 FWSAFQTLGLN-NPRYRPALKAVGRVVAILIAG 196 (209)
T ss_pred HHHHHHHCCCC-CchHHHHHHHHHHHHHHHHHH
Confidence 99999999975 333333444444444444443
No 19
>cd03526 SQR_QFR_TypeB_TM Succinate:quinone oxidoreductase (SQR) and Quinol:fumarate reductase (QFR) Type B subfamily, transmembrane subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol, while QFR catalyzes the reverse reaction. SQR, also called succinate dehydrogenase or Complex II, is part of the citric acid cycle and the aerobic respiratory chain, while QFR is involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Type B proteins contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside in the transmembrane subunits. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor/acc
Probab=97.64 E-value=0.0043 Score=44.79 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhh-c-----ChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 3 SVLSITHRGTGVALTAY-ALGLAGV-G-----LTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDT 75 (105)
Q Consensus 3 ~~~SI~HRiTGv~L~~~-~~~l~~l-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~ 75 (105)
...|-.+|+||+++.++ .+=+... . .++.|+...+.++++ +...+-.....++.+|..+|+.-...+.
T Consensus 89 t~~~~~m~~tG~ill~Fi~~Hl~~~~~~~~~~~~~~y~~~~~~f~~~-----~~~~~Yvv~~~~l~~Hl~hG~~s~~~t~ 163 (199)
T cd03526 89 TTLWWIQAMTGFAMLFFGSVHLYIMMTQAQPDRTIGFVMSSNRMSSE-----WMWPLYIVLLFAVELHGSVGLYSFAVTW 163 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999887 3333221 1 246677777766653 4456778888999999999999999999
Q ss_pred ccc
Q psy9433 76 GRA 78 (105)
Q Consensus 76 g~g 78 (105)
|..
T Consensus 164 G~~ 166 (199)
T cd03526 164 GWF 166 (199)
T ss_pred hcc
Confidence 864
No 20
>PLN00126 succinate dehydrogenase, cytochrome b subunit family; Provisional
Probab=97.57 E-value=5e-05 Score=50.60 Aligned_cols=20 Identities=40% Similarity=0.509 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q psy9433 1 ITSVLSITHRGTGVALTAYA 20 (105)
Q Consensus 1 it~~~SI~HRiTGv~L~~~~ 20 (105)
+||++||+|||||++|+.++
T Consensus 95 LT~~lSI~HRITGvaLs~~i 114 (129)
T PLN00126 95 LSATFSISHRIFGAALGAAI 114 (129)
T ss_pred chhhhhHHHHHHHHHHHHHH
Confidence 58999999999999998754
No 21
>cd00581 QFR_TypeB_TM Quinol:fumarate reductase (QFR) Type B subfamily, transmembrane subunit; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinone oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and rhodoquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside in the transmembrane subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The
Probab=97.38 E-value=0.012 Score=42.69 Aligned_cols=94 Identities=15% Similarity=0.008 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhh-cChh--hHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Q psy9433 3 SVLSITHRGTGVALTAY-ALGLAGV-GLTT--DINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGR- 77 (105)
Q Consensus 3 ~~~SI~HRiTGv~L~~~-~~~l~~l-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~- 77 (105)
..++-.+|+||+++.++ .+=+... ..|+ +.+...+.+.+. ....+-.....++.+|..+|+.-...+.|.
T Consensus 98 ~~~~~~q~~tG~ill~Fii~Hl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Yvv~~~al~~Hl~hG~~s~~qt~G~~ 172 (206)
T cd00581 98 TSLWWIQAVTGFVLFFLASAHLYEMLTNPEIIGPHTSAYRVVHG-----GWWLLYLALLPAVELHGGIGLYRLAVKWGWF 172 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCchHHHHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34567789999999887 3333222 1221 111112222221 334667778889999999999999999997
Q ss_pred -cccHHHHHHHHHHHHHHHHHHHHH
Q psy9433 78 -ALTIKKVYTTGYAMLGAAILTNLV 101 (105)
Q Consensus 78 -g~~~~~~~~~~~~v~~~s~v~t~~ 101 (105)
.-.++..++.++++.++-+++++.
T Consensus 173 ~~~~~~~~r~~~~~~~~~~~~lg~~ 197 (206)
T cd00581 173 ASESRKRLRRIKNVLSAFFLVLGLL 197 (206)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888887777766554
No 22
>TIGR02046 sdhC_b558_fam succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family. This family consists of the succinate dehydrogenase subunit C of Bacillus subtilis, designated cytochrome b-558, and related sequences that include a fumarate reductase subunit C. This subfamily is only weakly similar to the main group of succinate dehydrogenase cytochrome b subunits described by Pfam model pfam01127.
Probab=97.26 E-value=0.0096 Score=43.40 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhh----cCh----------hhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 3 SVLSITHRGTGVALTAY-ALGLAGV----GLT----------TDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANG 67 (105)
Q Consensus 3 ~~~SI~HRiTGv~L~~~-~~~l~~l----~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nG 67 (105)
++.|-.+|+||+++.++ .+=+... ..| +.|+...+.+++ |+...+-.....++.+|..+|
T Consensus 94 t~a~~~m~~tG~ill~Fiv~Hl~~f~~~~~~~~~~~~~~~~~d~y~~v~~~f~~-----p~~~~~Yvv~~~al~~Hl~hG 168 (214)
T TIGR02046 94 SWASRTMRVTGIIVLIFIGWHVLDFTIGAQMGEIFHMGVARHDGYDMVVLTFSS-----PIMLSIYIVAMLALGFHLSHG 168 (214)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccccccchhHHHHHHHHHcc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999887 3222221 111 115555554443 345567788889999999999
Q ss_pred HHHHHHHhcccc
Q psy9433 68 IRHLIWDTGRAL 79 (105)
Q Consensus 68 iRHl~wD~g~g~ 79 (105)
++-...+.|..-
T Consensus 169 l~s~~~t~G~~~ 180 (214)
T TIGR02046 169 LWSAAQTLGLNV 180 (214)
T ss_pred HHHHHHhCCCCC
Confidence 999999998643
No 23
>cd00581 QFR_TypeB_TM Quinol:fumarate reductase (QFR) Type B subfamily, transmembrane subunit; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinone oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and rhodoquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside in the transmembrane subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The
Probab=97.03 E-value=0.025 Score=41.05 Aligned_cols=63 Identities=14% Similarity=0.045 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHH----HH-HHhhcChhhHHHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 7 ITHRGTGVALTAYA----LG-LAGVGLTTDINSVVSFVDALNL----SAPILLAGKFILAFPVSYHTANGIR 69 (105)
Q Consensus 7 I~HRiTGv~L~~~~----~~-l~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~yH~~nGiR 69 (105)
.+|=+||+++.+++ .+ .....|||.||.+.+..++... -++.......++..++..|.+.|+|
T Consensus 3 ~~~slTGliL~lFl~~Hm~gNl~i~~G~eafn~ya~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~H~~~a~~ 74 (206)
T cd00581 3 FLQSATGLFLALFMWAHMLFVSSILLGKEAMYWVARFFEGAFFFGHGYPWVVSVVAAIVFALFVAHAFLALR 74 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhchhhccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999988872 22 2235799999999998887210 0356677889999999999999998
No 24
>cd03497 SQR_TypeB_1_TM Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Bacillus subtilis SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside on the transmembrane subunit. The transmembrane subunit of Bacillus subtilis SQR is also called Sdh cytochrome b558 subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers,
Probab=96.84 E-value=0.012 Score=42.61 Aligned_cols=61 Identities=25% Similarity=0.369 Sum_probs=46.5
Q ss_pred HHHHHHHHHH-HHHHH----HHH-HhhcChhhHHHHHHHHHhccchHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy9433 6 SITHRGTGVA-LTAYA----LGL-AGVGLTTDINSVVSFVDALNLSAPILLAGKFI-LAFPVSYHTANGIRH 70 (105)
Q Consensus 6 SI~HRiTGv~-L~~~~----~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~yH~~nGiRH 70 (105)
.-+|.+||++ |.+++ .+- ....+|+.|+.+.+.+++. +..+.++.+ +..++..|.+.|+|-
T Consensus 7 ~~~~slTGl~pL~lFl~~Hl~gN~~i~~g~~afn~ya~~l~~~----~~l~~~~~~ll~~~~l~H~~~a~~l 74 (207)
T cd03497 7 RRLHSLLGVVPIGLFLIEHLLTNSSAASGPEGFNAAVNFMHSL----PGLLLIEIFGIFLPLLFHAIYGIYI 74 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999 98872 222 2347999999999988873 245566666 559999999999983
No 25
>cd03526 SQR_QFR_TypeB_TM Succinate:quinone oxidoreductase (SQR) and Quinol:fumarate reductase (QFR) Type B subfamily, transmembrane subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol, while QFR catalyzes the reverse reaction. SQR, also called succinate dehydrogenase or Complex II, is part of the citric acid cycle and the aerobic respiratory chain, while QFR is involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Type B proteins contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside in the transmembrane subunits. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor/acc
Probab=96.78 E-value=0.017 Score=41.71 Aligned_cols=64 Identities=14% Similarity=0.012 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHH----HH-HHhhcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 7 ITHRGTGVALTAYA----LG-LAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIW 73 (105)
Q Consensus 7 I~HRiTGv~L~~~~----~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~w 73 (105)
.+|-+||++|.+++ .+ +..+.+||.|+.+.+.+++. ++.......++..++..|...|+|-..-
T Consensus 3 ~lmalTGl~L~lFl~~Hm~gNl~i~~g~~afn~ya~~l~~~---~~~~~~~~~~l~~~~~~H~~~a~~l~~~ 71 (199)
T cd03526 3 WLQSATGLFLGLFMIGHLFFNSTILLGDNVMNWVAKKFELL---PIVVSFLAAFIFAVFIAHAFLGVRKFPI 71 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999988872 22 22347999999999988873 3455667889999999999999996663
No 26
>cd03498 SQR_TypeB_2_TM Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. C. glutamicum SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside in the transmembrane subunit. The transmembrane subunit of members of this subfamily is also called Sdh cytochrome b558 subunit based on the Bacillus subtilis protein. The structural arrangem
Probab=96.54 E-value=0.017 Score=41.80 Aligned_cols=61 Identities=23% Similarity=0.337 Sum_probs=48.5
Q ss_pred HHHHHHHHHH----HH-HHhhcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 11 GTGVALTAYA----LG-LAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWD 74 (105)
Q Consensus 11 iTGv~L~~~~----~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD 74 (105)
+||++|.+++ .+ +..+.+||.|+.+.+.+++ ..++.+.++.++..++..|.+.|+|-..-+
T Consensus 7 ~TGl~L~lFl~~Hm~gNl~i~~g~~afn~ya~~l~~---~~~~l~~~~~~ll~~~l~Hv~~a~~l~~~n 72 (209)
T cd03498 7 LTGLFLVLFLLVHLLGNLKIFFGPEAFNAYAEFLHT---LNPLLWIARLVLLVAAVLHIVFGLQLTIRN 72 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHcC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999998872 22 2235799999999998886 124678899999999999999999987775
No 27
>PRK13554 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=96.53 E-value=0.033 Score=41.46 Aligned_cols=69 Identities=14% Similarity=0.098 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHH----HH-HHhhcChhhHHHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 3 SVLSITHRGTGVALTAYA----LG-LAGVGLTTDINSVVSFVDALNL------SAPILLAGKFILAFPVSYHTANGIRHL 71 (105)
Q Consensus 3 ~~~SI~HRiTGv~L~~~~----~~-l~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~yH~~nGiRHl 71 (105)
+..--+|=+||++|.+++ .. ...+.||+.|+.+.+.+++... .|+...+...++..++.+|.+-|+|-.
T Consensus 22 a~~d~lmslTGl~L~lFL~~Hm~~N~sil~G~eafN~~a~fl~~~~~~~~~~~~P~l~~~~~~~l~~~~i~H~~~a~~l~ 101 (241)
T PRK13554 22 AKADKLQSATGIMLGCFLLLHMHFESSILLGKEAFYHVVQFLEGGMFSSTGHGFPIVTKVFSVFMLLVVIVHAAVALRRF 101 (241)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445667889999988772 22 2335799999999998885211 246778889999999999999999963
No 28
>PRK13553 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=96.03 E-value=0.075 Score=39.99 Aligned_cols=64 Identities=20% Similarity=0.099 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhh-c-----Ch-hhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9433 5 LSITHRGTGVALTAY-ALGLAGV-G-----LT-TDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTG 76 (105)
Q Consensus 5 ~SI~HRiTGv~L~~~-~~~l~~l-~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g 76 (105)
+..+||+||+++.+. .+=++.. . +| .+++ .+++. ..| .+-+..+.+..+|..||+.=+....|
T Consensus 123 lW~~Q~iTG~ilf~~~~~Hl~~i~~~~~~Ig~~~Sa~----rv~~~--~~w---~fYlvlL~~v~lH~~iGLyR~~VKWG 193 (258)
T PRK13553 123 LWFIQAFTGFAMFFLASVHLYVMLTNPDKIGPYGSSD----RVVSQ--NMW---LLYIVLLFAVELHGSIGLYRLAVKWG 193 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCccccCchhhHH----HHhCC--cHH---HHHHHHHHHHHHHHHHhhhheeeEEE
Confidence 678999999999987 3333331 2 22 2233 23222 122 36667888999999999999998887
Q ss_pred c
Q psy9433 77 R 77 (105)
Q Consensus 77 ~ 77 (105)
.
T Consensus 194 ~ 194 (258)
T PRK13553 194 W 194 (258)
T ss_pred e
Confidence 5
No 29
>TIGR02046 sdhC_b558_fam succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family. This family consists of the succinate dehydrogenase subunit C of Bacillus subtilis, designated cytochrome b-558, and related sequences that include a fumarate reductase subunit C. This subfamily is only weakly similar to the main group of succinate dehydrogenase cytochrome b subunits described by Pfam model pfam01127.
Probab=96.01 E-value=0.086 Score=38.41 Aligned_cols=65 Identities=22% Similarity=0.276 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHH----HH-HHhhcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 7 ITHRGTGVALTAYA----LG-LAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWD 74 (105)
Q Consensus 7 I~HRiTGv~L~~~~----~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD 74 (105)
.+|=+||+++.+++ .+ +..+.+|+.|+.+.+.+++. ++.......++..++..|.+.|+|-..-.
T Consensus 7 ~lmalTGl~l~~Fl~~Hm~gNl~~~~g~~afn~ya~~L~~~---~~~~~~~~~~L~~~~l~H~~~a~~l~~~n 76 (214)
T TIGR02046 7 VVMALTGLVLLLFLVVHMVGNLFALFGAEAFNAAAHFLRSL---PFRLWLERIILFVPFILHAVYAVILSIRN 76 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999762 22 22357999999999988874 22245667899999999999999755554
No 30
>PRK13553 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=95.97 E-value=0.091 Score=39.55 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHH----HHH-HhhcChhhHHHHHHHHHhccc---h-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 3 SVLSITHRGTGVALTAYA----LGL-AGVGLTTDINSVVSFVDALNL---S-APILLAGKFILAFPVSYHTANGIR 69 (105)
Q Consensus 3 ~~~SI~HRiTGv~L~~~~----~~l-~~l~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~a~~yH~~nGiR 69 (105)
+..=.+|=+||++|+++. +.. ..+.||+.++...++++...+ + +++..+.-++...++.+|.+-|+|
T Consensus 22 a~lD~~qSltGviLglFl~~Hm~~~ssil~G~~afn~va~f~E~~~~~~~g~p~~~sl~~~~I~l~~l~Ha~lalr 97 (258)
T PRK13553 22 AKLDFLQSATGLFLGLFMWAHMFFVSTILISDDAMYKVAKFFEGSFFFKAGEPALVSFVAAGVILIFVVHAFLAMR 97 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhhCccccCCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 445578899999988872 222 336899999999999886433 1 455567778899999999999999
No 31
>PRK13554 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=95.59 E-value=0.2 Score=37.32 Aligned_cols=75 Identities=15% Similarity=0.042 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHH-HHHHHhh------cChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy9433 8 THRGTGVALTAY-ALGLAGV------GLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRALT 80 (105)
Q Consensus 8 ~HRiTGv~L~~~-~~~l~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g~~ 80 (105)
.+|+||+++.++ .+=+... ..+.+.+... + ++++ .+-.....++.+|..+|+.=.....|..-+
T Consensus 128 ~q~~TG~iil~Fi~~HL~~~~~~~~i~~~~s~~~v~---~----~~~~--~~Ylv~l~al~~Hl~hGl~s~~qtwG~~~~ 198 (241)
T PRK13554 128 WQLITGFILFFLVPVHLFTMILNPEIGPHLSAERVY---H----DNAW--LLYALLLPAVVIHAMIGLYRVAVKWGLTTN 198 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccchhhhc---c----cchH--HHHHHHHHHHHHHHHHHHHHHHhHhccCCC
Confidence 899999999887 3222221 1111222221 1 2223 466778899999999999999999998777
Q ss_pred HHHHHHHHHHH
Q psy9433 81 IKKVYTTGYAM 91 (105)
Q Consensus 81 ~~~~~~~~~~v 91 (105)
++..++.+++.
T Consensus 199 r~~~r~~~~v~ 209 (241)
T PRK13554 199 RSGLRKVAKVL 209 (241)
T ss_pred cHHHHHHHHHH
Confidence 78888888776
No 32
>PRK04987 fumarate reductase subunit C; Provisional
Probab=94.71 E-value=0.86 Score=31.01 Aligned_cols=93 Identities=18% Similarity=0.181 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHH----HHHHHhh-cChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhc
Q psy9433 7 ITHRGTGVALTAY----ALGLAGV-GLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHL-----IWDTG 76 (105)
Q Consensus 7 I~HRiTGv~L~~~----~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl-----~wD~g 76 (105)
.++-.|++....+ ++++..+ .||++++.+.++.+++ +.-++....+.+..||.-.=..-. ++--|
T Consensus 27 MlRE~T~v~~~~f~lvLl~Gl~~L~~g~~aw~~f~~flqnP-----iv~~lniiaL~a~LlHa~TwF~~~Pka~~i~v~~ 101 (130)
T PRK04987 27 MLREATAVPAVWFSLVLIYGLFALKNGPEAWAGFVSFLQNP-----IVVILNIITLAAALLHTKTWFEMAPKAANIIVKD 101 (130)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhCc-----HHHHHHHHHHHHHHHHHHHHHHHcchhheeeecC
Confidence 3455677766655 3555554 6899999999988876 677888889999999986422211 11124
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 77 RALTIKKVYTTGYAMLGAAILTNLVLTL 104 (105)
Q Consensus 77 ~g~~~~~~~~~~~~v~~~s~v~t~~~~~ 104 (105)
+.++.+.+.+..|++.++.-++.++++.
T Consensus 102 ~~l~~~~ii~~~wa~~avvs~i~L~i~~ 129 (130)
T PRK04987 102 EKMGPEPIIKALWAVTAVVSLVILVVAL 129 (130)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5577888888888888777666666543
No 33
>PF02313 Fumarate_red_D: Fumarate reductase subunit D; InterPro: IPR003418 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 13kDa hydrophobic subunit D. This component may be required to anchor the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.; GO: 0006106 fumarate metabolic process, 0016020 membrane; PDB: 3P4R_P 1KF6_P 3P4Q_P 3P4S_D 3CIR_P 2B76_D 1L0V_P 3P4P_D 1KFY_P.
Probab=93.94 E-value=1.1 Score=29.98 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy9433 30 TDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRAL 79 (105)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g~ 79 (105)
.+|++..++.+++ +.+++.+++.....+|..--+||-+=|.+...
T Consensus 49 ~sy~~i~~f~~~~-----~g~l~ll~~i~lplwha~HRi~h~lHDl~ih~ 93 (118)
T PF02313_consen 49 LSYERILAFAQSW-----IGKLFLLGVIALPLWHAAHRIHHGLHDLKIHV 93 (118)
T ss_dssp TSHHHHHHHHTSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHhch-----HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3699999887775 88999999999999999999999999987654
No 34
>PF02300 Fumarate_red_C: Fumarate reductase subunit C; InterPro: IPR003510 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 15kDa hydrophobic subunit C.; GO: 0016020 membrane; PDB: 1KFY_O 1L0V_O 3P4S_O 2B76_O 3CIR_O 3P4R_C 1KF6_O 3P4P_C 3P4Q_C.
Probab=91.48 E-value=3.2 Score=28.24 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHH----HHHHHhh-cChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHh---cc
Q psy9433 8 THRGTGVALTAY----ALGLAGV-GLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHL--IWDT---GR 77 (105)
Q Consensus 8 ~HRiTGv~L~~~----~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl--~wD~---g~ 77 (105)
+.-.|.+....+ ++++..+ .||+.|+.+.++.+++ +.-++....+.+..||...=..-. .+.. |+
T Consensus 27 lRE~T~v~~~~f~l~Ll~Gl~~L~~G~~aw~~~~~fl~nP-----~vv~lnliaLaa~L~Ha~TwF~l~Pkam~i~v~~~ 101 (129)
T PF02300_consen 27 LREGTSVPVAWFSLVLLYGLFALGQGPEAWQGWLAFLQNP-----IVVILNLIALAAALLHAKTWFELAPKAMPIIVGGE 101 (129)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSH-----HHHHHHHHHHHHHHHHHHHHHHHGGGG---EETTE
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHcCc-----HHHHHHHHHHHHHHHHHHHHHHHchhhhhhhcCCe
Confidence 444566665555 3555554 5889999999988775 677888999999999986422211 0111 34
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 78 ALTIKKVYTTGYAMLGAAILTNLVLT 103 (105)
Q Consensus 78 g~~~~~~~~~~~~v~~~s~v~t~~~~ 103 (105)
....+.+.+..|++.+..-++.+.+.
T Consensus 102 ~v~~~~i~~~~w~~~~~vsvv~L~~v 127 (129)
T PF02300_consen 102 RVPPRPIVKGLWAATAVVSVVVLVLV 127 (129)
T ss_dssp E--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777877766655544443
No 35
>cd00547 QFR_TypeD_subunitD Quinol:fumarate reductase (QFR) Type D subfamily, 13kD hydrophobic subunit D; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=90.82 E-value=3.5 Score=27.50 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy9433 29 TTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGR 77 (105)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~ 77 (105)
..+|++..++.+++ ++|++.++++....+|.+--++|-+=|.+.
T Consensus 44 a~~y~~i~aFa~s~-----iG~l~ll~~i~lplWh~~HRihh~lHDlki 87 (115)
T cd00547 44 ALSYDRIIAFAQSW-----IGKLFLLVLIILPMWHAMHRIHHGLHDLKI 87 (115)
T ss_pred ccCHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 46899999988775 899999999999999999999999999876
No 36
>cd00546 QFR_TypeD_subunitC Quinol:fumarate reductase (QFR) Type D subfamily, 15kD hydrophobic subunit C; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=89.18 E-value=5.2 Score=27.04 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHH----HHHHHhh-cChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH---hc
Q psy9433 7 ITHRGTGVALTAY----ALGLAGV-GLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHL--IWD---TG 76 (105)
Q Consensus 7 I~HRiTGv~L~~~----~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl--~wD---~g 76 (105)
.++-.|++....+ ++++..+ .||++++.+.++.+++ +.-++....+.+..||...=..-. .++ -|
T Consensus 23 MlRE~T~v~~~~f~lvLl~Gl~~L~~g~~aw~~f~~flqnP-----iv~~lniiaL~a~L~Ha~TwF~~~Pkam~i~v~~ 97 (124)
T cd00546 23 MLREATAVPTVWFSLVLLYGLFALGSGPESWAGFVSFLQNP-----IVVLLNIIALAAALLHAKTWFEMAPKVMNIIVKG 97 (124)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCc-----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Confidence 4555677766655 3555554 6899999999988886 677888889999999976422211 122 23
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHH
Q psy9433 77 RALTIKKVYTTGYAMLGAAILTNLV 101 (105)
Q Consensus 77 ~g~~~~~~~~~~~~v~~~s~v~t~~ 101 (105)
+..+.+.+.+..|++.++.-++.+.
T Consensus 98 ~~l~~~~iv~~~wa~~avvs~i~L~ 122 (124)
T cd00546 98 ERVPPEAITKALWAVTAVVSVVALV 122 (124)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777778777665554443
No 37
>PRK05470 fumarate reductase subunit D; Provisional
Probab=88.95 E-value=3.6 Score=27.52 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy9433 30 TDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRAL 79 (105)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g~ 79 (105)
.+|+...++.+++ ++|++.++++....+|.+--+.|-+=|.+...
T Consensus 49 ~sy~~i~aFa~s~-----iG~l~ll~~i~lplWh~~HRihHglHDlkih~ 93 (118)
T PRK05470 49 LSYERVLAFAQSF-----IGKLFLLLMIVLPLWCGLHRIHHGMHDLKIHV 93 (118)
T ss_pred cCHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 5799999988775 89999999999999999999999999987653
No 38
>cd03496 SQR_TypeC_CybS SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Eukaryotic SQRs reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. CybS and CybL are the two transmembrane proteins of eukaryotic SQRs. They contain heme and quinone binding sites. CybS is the eukaryotic homolog of the bacterial SdhD subunit. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the transmembrane subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of
Probab=83.83 E-value=9.4 Score=24.74 Aligned_cols=52 Identities=21% Similarity=0.101 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy9433 6 SITHRGTGVALTAY-ALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGR 77 (105)
Q Consensus 6 SI~HRiTGv~L~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~ 77 (105)
...+|+|+++|... ++.+.... + +| .....+..+.++|+--|.+-.+-|+-+
T Consensus 7 w~~eR~~avaLlpL~~~~~~~~~-------------~---~p----il~~ll~~~~~~H~~~G~q~vIeDYv~ 59 (104)
T cd03496 7 WTFERILAVSLLPLTPAAFFAPG-------------L---SP----VMDAALAAALLLHSHWGFESCIIDYVP 59 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------------c---cH----HHHHHHHHHHHHHHHhcceeeeeecCC
Confidence 45799999998765 33222211 1 11 456678889999999999999999876
No 39
>PRK13603 fumarate reductase subunit C; Provisional
Probab=82.16 E-value=13 Score=25.16 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHH----HHHHHhh-cChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH---hc
Q psy9433 7 ITHRGTGVALTAY----ALGLAGV-GLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHL--IWD---TG 76 (105)
Q Consensus 7 I~HRiTGv~L~~~----~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl--~wD---~g 76 (105)
.++-.|++....+ ++++..+ .||++++.+.++.+++ +.-++....+.+..||.-.=..-. .++ -|
T Consensus 23 MlRE~T~v~~~~f~lvLl~Gl~~L~~G~~aw~~f~~flqnP-----ivv~lniiaL~a~L~Ha~TwF~~~Pkam~I~v~~ 97 (126)
T PRK13603 23 MLREISCIFVAWFVLYLVLVLRAVGAGGNSYQRFLDFSANP-----VVVVLNVVALSFLLLHAVTWFGSAPRAMVIQVRG 97 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCc-----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Confidence 4555677766665 3555544 6899999999988876 677888889999999976422211 122 24
Q ss_pred ccccHHHHHHHHHHHHHHH
Q psy9433 77 RALTIKKVYTTGYAMLGAA 95 (105)
Q Consensus 77 ~g~~~~~~~~~~~~v~~~s 95 (105)
+.++.+.+.+..|++.++.
T Consensus 98 ~~l~~~~iv~~~wa~~avv 116 (126)
T PRK13603 98 RRVPARAVLAGHYAAWLVV 116 (126)
T ss_pred CcCChHHHHHHHHHHHHHH
Confidence 5567777777777765544
No 40
>PF07950 DUF1691: Protein of unknown function (DUF1691); InterPro: IPR012472 This family of fungal proteins is uncharacterised. Each protein contains two copies of this region.
Probab=81.89 E-value=3.6 Score=26.75 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 29 TTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDT 75 (105)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~ 75 (105)
+++++...+.+++. +++..+-..++..+.+||+.+|+--.+...
T Consensus 24 ~~~L~~v~~~~~~~---p~~~~~~~~~Lv~~~~~Hv~sG~a~~~~~~ 67 (110)
T PF07950_consen 24 DIGLEYVRHGYQSS---PVFGILEYLLLVGSGVYHVVSGIALRLGRR 67 (110)
T ss_pred hhhHHHHHHHHcCC---chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666676666653 344455667888999999999997777665
No 41
>COG3029 FrdC Fumarate reductase subunit C [Energy production and conversion]
Probab=52.03 E-value=36 Score=23.00 Aligned_cols=68 Identities=12% Similarity=0.195 Sum_probs=43.4
Q ss_pred HHHHhh-cChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cccccHHHHHHHHH
Q psy9433 21 LGLAGV-GLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDT----------GRALTIKKVYTTGY 89 (105)
Q Consensus 21 ~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~----------g~g~~~~~~~~~~~ 89 (105)
+++..+ .+|+.++.+.++.+++ ....+....+.+..+|... ..+. |.....+.+.+.-|
T Consensus 44 ~gl~al~~gp~~~~~fldFl~NP-----vVv~lNlitL~a~LlHt~T-----wF~maPka~nIiVk~erv~~~~i~~alw 113 (129)
T COG3029 44 YGLFALGSGPEAWQGFLDFLANP-----VVVILNLITLAAALLHTVT-----WFEMAPKAMNIIVKGERVGPEPIIKALW 113 (129)
T ss_pred HHHHHHccCchHHHHHHHHhcCC-----eEEeehHHHHHHHHHHHHH-----HHHhCcceeEEEecCccCChHHHHHHHH
Confidence 445444 6899999999988775 5556777788888888743 2222 22345555666667
Q ss_pred HHHHHHHHH
Q psy9433 90 AMLGAAILT 98 (105)
Q Consensus 90 ~v~~~s~v~ 98 (105)
++.+..-++
T Consensus 114 avtavvSvI 122 (129)
T COG3029 114 AVTAVVSVI 122 (129)
T ss_pred HHHHHHHHH
Confidence 766554443
No 42
>COG3080 FrdD Fumarate reductase subunit D [Energy production and conversion]
Probab=51.58 E-value=70 Score=21.26 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=34.1
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9433 33 NSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRA 78 (105)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g 78 (105)
+...++.+|+ +.|++.+.++.--.+|...-+.|=+-|....
T Consensus 52 e~llaf~~s~-----Igkl~llvl~vlplw~a~HRihHgmhdlk~h 92 (118)
T COG3080 52 ERLLAFAQSP-----IGKLFLLVLIVLPLWCALHRIHHGMHDLKIH 92 (118)
T ss_pred HHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHhhhhheeee
Confidence 5677777775 8899999999889999999999999996544
No 43
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=51.38 E-value=31 Score=19.48 Aligned_cols=27 Identities=19% Similarity=0.036 Sum_probs=23.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 78 ALTIKKVYTTGYAMLGAAILTNLVLTL 104 (105)
Q Consensus 78 g~~~~~~~~~~~~v~~~s~v~t~~~~~ 104 (105)
..++++..++..+|+..+++.++.+++
T Consensus 17 WPt~~e~~~~t~~Vi~~~~~~~~~~~~ 43 (55)
T TIGR00964 17 WPSRKELITYTIVVIVFVIFFSLFLFG 43 (55)
T ss_pred CcCHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999998888764
No 44
>PRK07597 secE preprotein translocase subunit SecE; Reviewed
Probab=48.45 E-value=34 Score=19.84 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=23.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 78 ALTIKKVYTTGYAMLGAAILTNLVLTL 104 (105)
Q Consensus 78 g~~~~~~~~~~~~v~~~s~v~t~~~~~ 104 (105)
..++++..++...++..+++.++.+++
T Consensus 26 WPs~~e~~~~t~~Vi~~~~~~~~~i~~ 52 (64)
T PRK07597 26 WPTRKELVRSTIVVLVFVAFFALFFYL 52 (64)
T ss_pred CcCHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999888764
No 45
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=45.02 E-value=52 Score=18.46 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=22.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 78 ALTIKKVYTTGYAMLGAAILTNLVLTL 104 (105)
Q Consensus 78 g~~~~~~~~~~~~v~~~s~v~t~~~~~ 104 (105)
..++++..++..+++..+++.++.++.
T Consensus 18 WP~~~e~~~~t~~Vl~~~~i~~~~~~~ 44 (57)
T PF00584_consen 18 WPSRKELLKSTIIVLVFVIIFGLFFFL 44 (57)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999888887653
No 46
>PLN00131 hypothetical protein; Provisional
Probab=43.64 E-value=14 Score=26.31 Aligned_cols=12 Identities=33% Similarity=0.360 Sum_probs=10.3
Q ss_pred ChHHHHHHHHHH
Q psy9433 1 ITSVLSITHRGT 12 (105)
Q Consensus 1 it~~~SI~HRiT 12 (105)
+|+..|++|||-
T Consensus 18 lTw~~Si~hRif 29 (218)
T PLN00131 18 LTSAFPIFRRCF 29 (218)
T ss_pred hhhhHHHHHHHH
Confidence 478999999975
No 47
>PRK05740 secE preprotein translocase subunit SecE; Reviewed
Probab=36.46 E-value=1.1e+02 Score=19.33 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=23.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 78 ALTIKKVYTTGYAMLGAAILTNLVLTL 104 (105)
Q Consensus 78 g~~~~~~~~~~~~v~~~s~v~t~~~~~ 104 (105)
..++||..++..+|+..+++.++.++.
T Consensus 52 WPtr~e~~~~t~~Viv~~~i~~l~i~~ 78 (92)
T PRK05740 52 WPTRQETLQTTLIVIAVVIVMALILWG 78 (92)
T ss_pred CcCHHHHHhHHHHHhhHHHHHHHHHHH
Confidence 568999999999999999999888764
No 48
>PF05328 CybS: CybS; InterPro: IPR007992 This family consists of several eukaryotic succinate dehydrogenase [ubiquinone] cytochrome B small subunit, mitochondrial precursor (CybS) proteins. SDHD encodes the small subunit (cybS) of cytochrome b in succinate-ubiquinone oxidoreductase (mitochondrial complex II). Mitochondrial complex II is involved in the Krebs cycle and in the aerobic electron transport chain. It contains four proteins. The catalytic core consists of a flavoprotein and an iron-sulphur protein; these proteins are anchored to the mitochondrial inner membrane by the large subunit of cytochrome b (cybL) and cybS, which together comprise the haem-protein cytochrome b. Mutations in the SDHD gene can lead to hereditary paraganglioma, characterised by the development of benign, vascularised tumours in the head and neck [].; GO: 0005506 iron ion binding, 0020037 heme binding, 0006099 tricarboxylic acid cycle, 0005740 mitochondrial envelope, 0016021 integral to membrane; PDB: 3AE7_D 3AEB_D 3AEC_D 3AE6_D 3AE4_D 3AE3_D 3AEG_D 3SFD_D 3AE9_D 1ZOY_D ....
Probab=35.02 E-value=1.4e+02 Score=20.06 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHH-HHHHHHHHH
Q psy9433 51 AGKFILAFPVSYHTANGIRHLIWDTGRALTIKKVYTTG-YAMLGAAIL 97 (105)
Q Consensus 51 ~~~~~~~~a~~yH~~nGiRHl~wD~g~g~~~~~~~~~~-~~v~~~s~v 97 (105)
.+...+..++..|.--|+...+-|+-+-...+...+.+ +...+.|++
T Consensus 61 ~~D~~La~~l~~H~h~G~~svI~DYip~~v~~~~~~~a~~~l~~~s~~ 108 (132)
T PF05328_consen 61 VMDYLLAVALPLHSHIGFESVITDYIPKRVFGKLHKLAMWLLYAGSAL 108 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-----SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccchHHHHHHHHHHHHHHH
Confidence 35566778889999999999999997633222333444 334444443
No 49
>TIGR02848 spore_III_AC stage III sporulation protein AC. Members of this protein family are designated SpoIIIAC, part of the spoIIIA operon of sporulation genes whose mutant phenotype is linked to sporulation stage III. Members of this family are encoded by the genome of a species if and only if that species is capable of endospore formation, as in Bacillus subtilis. The molecular function of this small, probable integral membrane protein is unknown.
Probab=33.79 E-value=1.1e+02 Score=18.33 Aligned_cols=58 Identities=10% Similarity=0.129 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 6 SITHRGTGVALTAYALGLA-GVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLI 72 (105)
Q Consensus 6 SI~HRiTGv~L~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~ 72 (105)
++.=||-|+.+-+..+.-- --++.++++.+... .+-.+.+.+..+..++.+|-+|-+.
T Consensus 4 ~lIFkIAgVGIlvavl~~vLk~sGkee~A~~~tL---------aG~iiVL~~Vi~~i~~LF~~vks~F 62 (64)
T TIGR02848 4 SLIFKIAGVGILVAVIHTILKQSGKEEQAQMVTL---------AGIVVVLFMVITLINDLFNKIKTVF 62 (64)
T ss_pred hhhhhHhhHHHHHHHHHHHHHHcCcHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666888887765532222 23677877777653 2334556788899999999998764
No 50
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=33.73 E-value=29 Score=19.69 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy9433 30 TDINSVVSFVDALNLSAPILLAGKFILAFPVSYH 63 (105)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH 63 (105)
++|+.+.+.-+. .|.|+..++...+++++.|=
T Consensus 8 H~~DGI~E~dnp--lP~ww~~~f~~tivfa~~Y~ 39 (51)
T PF14715_consen 8 HEWDGIRELDNP--LPRWWLWLFYGTIVFAVGYL 39 (51)
T ss_pred CccCChhhhcCC--CCHHHHHHHHHHHHHHHHHH
Confidence 345556654333 37777777766666666653
No 51
>PHA02844 putative transmembrane protein; Provisional
Probab=32.71 E-value=1.2e+02 Score=18.64 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=26.9
Q ss_pred HHHHhhcChhhHHHHHHHHHhc--c-----------chH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 21 LGLAGVGLTTDINSVVSFVDAL--N-----------LSA---PILLAGKFILAFPVSYHTANGIR 69 (105)
Q Consensus 21 ~~l~~l~~~~~~~~~~~~~~~~--~-----------~~~---~~~~~~~~~~~~a~~yH~~nGiR 69 (105)
++...-..++||+.+++.+.+. + .+. ++.-++...+...++||++-.+|
T Consensus 9 FGVFmsS~DdDFnnFI~vVksVLtd~~~s~~~~~~~~~~~~~~ii~i~~v~~~~~~~flYLK~~~ 73 (75)
T PHA02844 9 FGVFLSSENEDFNNFIDVVKSVLSDDYDGVNKNNVCSSSTKIWILTIIFVVFATFLTFLYLKAVP 73 (75)
T ss_pred HhhhcCCchHHHHHHHHHHHHHHcCCCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 3333345667899988776642 1 011 22233444555667777776554
No 52
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.33 E-value=1.1e+02 Score=17.99 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 31 DINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANG 67 (105)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nG 67 (105)
+|+..+++.++ ++-+...++..+..||.++-
T Consensus 2 ~~e~~~~~a~a------~~t~~~~l~fiavi~~ayr~ 32 (60)
T COG4736 2 TYEMMRGFADA------WGTIAFTLFFIAVIYFAYRP 32 (60)
T ss_pred cHHHHHHHHHH------HHHHHHHHHHHHHHHHHhcc
Confidence 46666666555 34455566777888887753
No 53
>PF13795 HupE_UreJ_2: HupE / UreJ protein
Probab=28.00 E-value=1.9e+02 Score=20.06 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHH
Q psy9433 62 YHTANGIRHLIWDTGRAL--TIKKVYTTGYAMLGAA 95 (105)
Q Consensus 62 yH~~nGiRHl~wD~g~g~--~~~~~~~~~~~v~~~s 95 (105)
-|+++|.-|+..=.+--+ ..++.++.-+.+-+.+
T Consensus 7 ~HIl~G~DHlLFll~L~l~~~~~~~~~ll~~vTaFT 42 (151)
T PF13795_consen 7 EHILTGYDHLLFLLALVLPFLFRSWKRLLKLVTAFT 42 (151)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655554433 4444454444444433
No 54
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=26.40 E-value=1.4e+02 Score=17.93 Aligned_cols=27 Identities=19% Similarity=0.043 Sum_probs=22.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 78 ALTIKKVYTTGYAMLGAAILTNLVLTL 104 (105)
Q Consensus 78 g~~~~~~~~~~~~v~~~s~v~t~~~~~ 104 (105)
..++++..++...|+...++.++.++.
T Consensus 36 WPsrke~~~~t~~Vl~~v~~~s~~~~~ 62 (73)
T COG0690 36 WPTRKELIRSTLIVLVVVAFFSLFLYG 62 (73)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888999999999988888887754
No 55
>PHA02819 hypothetical protein; Provisional
Probab=24.44 E-value=73 Score=19.43 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=6.4
Q ss_pred cChhhHHHHHHH
Q psy9433 27 GLTTDINSVVSF 38 (105)
Q Consensus 27 ~~~~~~~~~~~~ 38 (105)
..++||+.+++.
T Consensus 15 S~DdDFnnFI~V 26 (71)
T PHA02819 15 SSDDDFNNFINV 26 (71)
T ss_pred CchhHHHHHHHH
Confidence 344566665543
No 56
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=21.78 E-value=1.9e+02 Score=17.04 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=16.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHH
Q psy9433 49 LLAGKFILAFP-VSYHTANGIRH 70 (105)
Q Consensus 49 ~~~~~~~~~~a-~~yH~~nGiRH 70 (105)
+-++.+..+++ ++|=.+|.+.|
T Consensus 13 VLLISfiIlfgRl~Y~~I~a~~h 35 (59)
T PF11119_consen 13 VLLISFIILFGRLIYSAIGAWVH 35 (59)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 34566777777 88888888877
No 57
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=21.76 E-value=1.4e+02 Score=23.26 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHH
Q psy9433 50 LAGKFILAFPVSYHTANGIRHLIWDTGR-ALTIKKVYTTGYAMLG 93 (105)
Q Consensus 50 ~~~~~~~~~a~~yH~~nGiRHl~wD~g~-g~~~~~~~~~~~~v~~ 93 (105)
++.+++..+ -.||...|+|.++.|..+ .+.+.-....+|.++.
T Consensus 337 ~fyr~gya~-P~~n~~~~~r~I~fd~~~~~lg~n~gil~aw~~v~ 380 (382)
T PF12051_consen 337 GFYRYGYAM-PMHNIYEGLRVIFFDTCKGQLGRNYGILFAWIVVN 380 (382)
T ss_pred cHHHHhhhh-hHHHHHHHHHHheeCCCcccccchHHHHHHHHHHH
Confidence 345678888 789999999999999776 4555555566666553
No 58
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=20.12 E-value=1e+02 Score=18.85 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q psy9433 66 NGIRHLIWDTGRALTIKKVYTTGYAMLGAAI 96 (105)
Q Consensus 66 nGiRHl~wD~g~g~~~~~~~~~~~~v~~~s~ 96 (105)
|-||+.+-|-.+..+++....+.|..+.+++
T Consensus 25 ~vVksVltdk~~~~~~~~~~~~~~~~~ii~i 55 (72)
T PF12575_consen 25 NVVKSVLTDKKKLKNNKNNKNFNWIILIISI 55 (72)
T ss_pred HHHHHHHcCCccccccCCCCcchHHHHHHHH
Confidence 4455566664333334433334444444443
Done!