Query psy9433
Match_columns 105
No_of_seqs 111 out of 987
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:14:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vr8_C Cytochrome B-large subu 100.0 1.2E-32 4.2E-37 195.2 14.0 104 1-104 67-172 (188)
2 1zoy_C Large cytochrome bindin 100.0 6E-32 2E-36 184.2 13.6 105 1-105 34-140 (140)
3 2h88_C Succinate dehydrogenase 100.0 1.1E-31 3.7E-36 183.0 13.7 104 1-104 34-139 (140)
4 2wdq_C Succinate dehydrogenase 100.0 2E-29 6.8E-34 169.4 14.1 99 1-104 22-126 (129)
5 2wdq_D Succinate dehydrogenase 99.6 7.6E-15 2.6E-19 96.5 13.2 74 4-82 14-90 (115)
6 2bs2_C Quinol-fumarate reducta 96.9 0.021 7E-07 41.7 11.5 83 5-92 125-217 (256)
7 2bs2_C Quinol-fumarate reducta 93.8 0.22 7.7E-06 36.1 7.0 65 5-69 26-99 (256)
8 1kf6_D Fumarate reductase 13 k 92.2 1.5 5.2E-05 28.4 8.8 46 30-80 50-95 (119)
9 1kf6_C Fumarate reductase 15 k 87.1 4.7 0.00016 26.5 10.7 90 8-102 27-126 (130)
10 2h88_D Succinate dehydrogenase 81.0 7.9 0.00027 24.1 10.5 55 6-82 10-65 (103)
11 2zjs_E Preprotein translocase 34.7 19 0.00064 20.0 1.6 27 78-104 21-47 (60)
12 3dl8_C SECE; RECA-type ATPase 32.0 25 0.00085 19.8 1.8 27 78-104 20-46 (65)
13 1jek_A ENV polyprotein; envelo 22.0 86 0.0029 16.0 2.5 16 56-71 17-32 (42)
No 1
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=100.00 E-value=1.2e-32 Score=195.25 Aligned_cols=104 Identities=35% Similarity=0.531 Sum_probs=94.5
Q ss_pred ChHHHHHHHHHHHHHHHHH--HHHHHhhcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9433 1 ITSVLSITHRGTGVALTAY--ALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRA 78 (105)
Q Consensus 1 it~~~SI~HRiTGv~L~~~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g 78 (105)
+||++||+|||||++|+++ ++.+..+.+|++|+.+.+.++++..|.++.++++++++++++||++|||||++||+|+|
T Consensus 67 lt~~~SIlHRITGv~L~~~l~l~~la~l~sp~~f~~~~~~~~s~~lp~~i~~lvk~~l~~a~~yH~~nGIRHLiwD~G~g 146 (188)
T 3vr8_C 67 MTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEFIRGLGIPWVILDTFKFIIAFPIAFHTLNGIRFIGFDMAKG 146 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccc
Confidence 4899999999999999988 34445578999999999988876567778899999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 79 LTIKKVYTTGYAMLGAAILTNLVLTL 104 (105)
Q Consensus 79 ~~~~~~~~~~~~v~~~s~v~t~~~~~ 104 (105)
+|+|+++++||+++++|+++++++++
T Consensus 147 l~l~~~~~sg~~vl~lSvvltl~la~ 172 (188)
T 3vr8_C 147 TDIPSIYRGAYLVLGLAALISLAVVV 172 (188)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 2
>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate, ubiquinone oxidoreductase, mitochondrial respiratory complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa} PDB: 1zp0_C* 3abv_C* 3ae1_C* 3ae2_C* 3ae3_C* 3ae4_C* 3ae5_C* 3ae6_C* 3ae7_C* 3ae8_C* 3ae9_C* 3aea_C* 3aeb_C* 3aec_C* 3aed_C* 3aee_C* 3aef_C* 3aeg_C* 3sfd_C* 3sfe_C*
Probab=99.98 E-value=6e-32 Score=184.24 Aligned_cols=105 Identities=39% Similarity=0.687 Sum_probs=91.0
Q ss_pred ChHHHHHHHHHHHHHHHHH--HHHHHhhcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9433 1 ITSVLSITHRGTGVALTAY--ALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRA 78 (105)
Q Consensus 1 it~~~SI~HRiTGv~L~~~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g 78 (105)
+||++||+|||||++|+++ +.....+.+|++|+.+.+.+++..+++.+.+.+|++++++++||++||+||++||+|+|
T Consensus 34 ~t~~~SIlHRiTGv~L~~~l~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~yH~~nGiRHL~wD~g~g 113 (140)
T 1zoy_C 34 LPMAMSICHRGTGIALSAGVSLFGLSALLLPGNFESHLELVKSLCLGPTLIYTAKFGIVFPLMYHTWNGIRHLIWDLGKG 113 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc
Confidence 4899999999999999998 23334467899999999887665333445577889999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy9433 79 LTIKKVYTTGYAMLGAAILTNLVLTLL 105 (105)
Q Consensus 79 ~~~~~~~~~~~~v~~~s~v~t~~~~~~ 105 (105)
+|+|+.++++|+++++|++++++++++
T Consensus 114 ~~~~~~~~s~~~v~~~s~vlt~~~~~~ 140 (140)
T 1zoy_C 114 LTIPQLTQSGVVVLILTVLSSVGLAAM 140 (140)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999998864
No 3
>2h88_C Succinate dehydrogenase cytochrome B, large subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 2h89_C* 1yq3_C* 1yq4_C* 2fbw_C* 2wqy_C*
Probab=99.98 E-value=1.1e-31 Score=183.02 Aligned_cols=104 Identities=39% Similarity=0.682 Sum_probs=90.0
Q ss_pred ChHHHHHHHHHHHHHHHHH--HHHHHhhcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9433 1 ITSVLSITHRGTGVALTAY--ALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRA 78 (105)
Q Consensus 1 it~~~SI~HRiTGv~L~~~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g 78 (105)
+||++||+|||||++|+++ +.....+.+|++|+.+.+.+++..+++.+.+.++++++++++||++||+||++||+|+|
T Consensus 34 lt~~~SIlHRiTGv~L~~~l~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~yH~~nGiRHL~wD~g~g 113 (140)
T 2h88_C 34 LPMAMSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVVKSLSLSPALIYSAKFALVFPLSYHTWNGIRHLVWDMGKG 113 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc
Confidence 4899999999999999998 23334467899999999887665333445567889999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 79 LTIKKVYTTGYAMLGAAILTNLVLTL 104 (105)
Q Consensus 79 ~~~~~~~~~~~~v~~~s~v~t~~~~~ 104 (105)
+++|+.++++|+++++|+++++++++
T Consensus 114 ~~~~~~~~s~~~v~~~s~vlt~~~~~ 139 (140)
T 2h88_C 114 FKLSQVEQSGVVVLILTLLSSAAIAS 139 (140)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998874
No 4
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=99.97 E-value=2e-29 Score=169.44 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=87.1
Q ss_pred ChHHHHHHHHHHHHHHHHH-H---HHHHh-hcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 1 ITSVLSITHRGTGVALTAY-A---LGLAG-VGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDT 75 (105)
Q Consensus 1 it~~~SI~HRiTGv~L~~~-~---~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~ 75 (105)
+|+++||+|||||++|+++ . +.+.. +.+|++|+.+.+.+.++ +.|+++++.++++.||.+||+||++||+
T Consensus 22 ~t~~~silhRiTGv~L~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~yH~~nGiRhl~~D~ 96 (129)
T 2wdq_C 22 ITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSF-----FVKFIMWGILTALAYHVVVGIRHMMMDF 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHhHHHHHhhc
Confidence 4799999999999999988 2 22222 47899999998877664 6789999999999999999999999999
Q ss_pred ccccc-HHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 76 GRALT-IKKVYTTGYAMLGAAILTNLVLTL 104 (105)
Q Consensus 76 g~g~~-~~~~~~~~~~v~~~s~v~t~~~~~ 104 (105)
|+|+| +|+.++++|++++++++++++++.
T Consensus 97 G~g~~~~~~~~~~~~~vl~~s~vlt~~~~~ 126 (129)
T 2wdq_C 97 GYLEETFEAGKRSAKISFVITVVLSLLAGV 126 (129)
T ss_dssp TSSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999998764
No 5
>2wdq_D Succinate dehydrogenase hydrophobic membrane ANCH subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* 2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Probab=99.64 E-value=7.6e-15 Score=96.52 Aligned_cols=74 Identities=16% Similarity=0.164 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHh--hcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy9433 4 VLSITHRGTGVALTAY-ALGLAG--VGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRALT 80 (105)
Q Consensus 4 ~~SI~HRiTGv~L~~~-~~~l~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g~~ 80 (105)
--.++||+||++|.++ ++.+.. ..+|++|+.+.+.++++ +.|++..+++++..||..||+||+++|++++..
T Consensus 14 ~~Wi~~RiSgv~L~~l~~~~l~~~~~~~~~~y~~~~~~~~~p-----~~~i~~~l~l~~~~~H~~~Gir~ii~Dyv~~~~ 88 (115)
T 2wdq_D 14 HDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASA-----FTKVFTLLALFSILIHAWIGMWQVLTDYVKPLA 88 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchh
Confidence 3578999999999998 433333 36889999999987664 678999999999999999999999999998854
Q ss_pred HH
Q psy9433 81 IK 82 (105)
Q Consensus 81 ~~ 82 (105)
.+
T Consensus 89 ~R 90 (115)
T 2wdq_D 89 LR 90 (115)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 6
>2bs2_C Quinol-fumarate reductase diheme cytochrome B subunit C; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: f.21.2.1 PDB: 1qlb_C* 1e7p_C* 2bs3_C* 2bs4_C*
Probab=96.90 E-value=0.021 Score=41.70 Aligned_cols=83 Identities=17% Similarity=0.019 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHh-hcChh--hHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy9433 5 LSITHRGTGVALTAY-ALGLAG-VGLTT--DINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRALT 80 (105)
Q Consensus 5 ~SI~HRiTGv~L~~~-~~~l~~-l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g~~ 80 (105)
.+-.+|+||+++.++ .+=+.. ...|+ +.+...+.++++ ....+-.....++.+|.++|+.-...+.|..-.
T Consensus 125 ~w~~q~~tG~iillfii~Hl~~~~~~~~~~~~~~~~~~f~~p-----~~~~~Yiv~lval~~Hl~hGl~s~~qt~G~~~~ 199 (256)
T 2bs2_C 125 LWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSE-----WMWPLYLVLLFAVELHGSVGLYRLAVKWGWFDG 199 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSTTHHHHHHHTT-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhHHHHHhCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 446789999998887 322221 12222 111111223332 334566778899999999999999999996433
Q ss_pred ------HHHHHHHHHHHH
Q psy9433 81 ------IKKVYTTGYAML 92 (105)
Q Consensus 81 ------~~~~~~~~~~v~ 92 (105)
++..++.++.+.
T Consensus 200 ~~~~~~~~~~~~i~~~l~ 217 (256)
T 2bs2_C 200 ETPDKTRANLKKLKTLMS 217 (256)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cchHhHHHHHHHHHHHHH
Confidence 344455554433
No 7
>2bs2_C Quinol-fumarate reductase diheme cytochrome B subunit C; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: f.21.2.1 PDB: 1qlb_C* 1e7p_C* 2bs3_C* 2bs4_C*
Probab=93.83 E-value=0.22 Score=36.15 Aligned_cols=65 Identities=11% Similarity=-0.120 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHH----HH-HHhhcChhhHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 5 LSITHRGTGVALTAYA----LG-LAGVGLTTDINSVVSFVDALN----LSAPILLAGKFILAFPVSYHTANGIR 69 (105)
Q Consensus 5 ~SI~HRiTGv~L~~~~----~~-l~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~yH~~nGiR 69 (105)
.=.+|=+||++|..++ .. ...+.||+.|+.+.+++++.. ..++...+...++..++.+|...|+|
T Consensus 26 ~~~lmalTGliL~lFL~~Hm~~N~~il~G~eafn~~a~fl~~~~~~~~g~p~~l~i~~~~L~~~~l~H~~~al~ 99 (256)
T 2bs2_C 26 LDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHAFLAMR 99 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTCHHHHHHHHHHTTCTTTSSSCCTHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999988872 22 223579999999999887621 12345678888999999999999999
No 8
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=92.21 E-value=1.5 Score=28.39 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy9433 30 TDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRALT 80 (105)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g~~ 80 (105)
.+|+...++.+++ +++++.+++.....+|.+--++|-+=|.+....
T Consensus 50 lsY~~~~aFa~s~-----ig~l~ll~~i~lplWh~~HRihh~lHDlkih~~ 95 (119)
T 1kf6_D 50 LSYERVLAFAQSF-----IGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVP 95 (119)
T ss_dssp TSHHHHHHHHTSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred ccHHHHHHHHhcH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhheeecC
Confidence 4899999887775 889999999999999999999999999877654
No 9
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=87.10 E-value=4.7 Score=26.47 Aligned_cols=90 Identities=14% Similarity=0.160 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHH----HHHHHhh-cChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---hcc
Q psy9433 8 THRGTGVALTAY----ALGLAGV-GLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLI--WD---TGR 77 (105)
Q Consensus 8 ~HRiTGv~L~~~----~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~--wD---~g~ 77 (105)
+.-.|.+....+ ++++..+ .||++|+.+.++.+++ +.-++....+.+..||...=..-.= ++ -|+
T Consensus 27 lRE~T~v~~~wf~l~Ll~Gl~~L~~G~~aw~~fv~fl~nP-----ivvilniiaLaa~L~Ha~TwF~l~Pka~~I~v~~~ 101 (130)
T 1kf6_C 27 LREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNP-----VIVIINLITLAAALLHTKTWFELAPKAANIIVKDE 101 (130)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSS-----HHHHHHHHHHHHHHHHHHHHHHHGGGGCCCBSSSS
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCc-----HHHHHHHHHHHHHHHHHHHHHHHcchhheeeeCCC
Confidence 444566655555 3455444 6889999999888876 6778888899999999864221110 11 123
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Q psy9433 78 ALTIKKVYTTGYAMLGAAILTNLVL 102 (105)
Q Consensus 78 g~~~~~~~~~~~~v~~~s~v~t~~~ 102 (105)
..+.+.+.+..|++.+..-++.+.+
T Consensus 102 ~~~~~~i~~~~wa~~~vvsvi~L~~ 126 (130)
T 1kf6_C 102 KMGPEPIIKSLWAVTVVATIVILFV 126 (130)
T ss_dssp BCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677787776655554443
No 10
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=81.02 E-value=7.9 Score=24.14 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhcChhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Q psy9433 6 SITHRGTGVALTAY-ALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRALTIK 82 (105)
Q Consensus 6 SI~HRiTGv~L~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~yH~~nGiRHl~wD~g~g~~~~ 82 (105)
...+|+++++|... ++... . +.+ .....+..+..+|+=-|+.-.+-|+-++...+
T Consensus 10 W~~eR~~avallpL~p~~~~----------------~---~~p---v~d~~l~~~l~~H~~~G~q~vI~DYv~~~~~~ 65 (103)
T 2h88_D 10 WTSERAVSALLLGLLPAAYL----------------Y---PGP---AVDYSLAAALTLHGHWGLGQVITDYVHGDTPI 65 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------------S---CSH---HHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH----------------c---CcH---HHHHHHHHHHHHHHHHhcCeeeecccccchHH
Confidence 45789999988653 21111 1 111 45566788999999999999999998764433
No 11
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=34.71 E-value=19 Score=19.97 Aligned_cols=27 Identities=22% Similarity=0.089 Sum_probs=22.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 78 ALTIKKVYTTGYAMLGAAILTNLVLTL 104 (105)
Q Consensus 78 g~~~~~~~~~~~~v~~~s~v~t~~~~~ 104 (105)
..++++..++..+|++.+++.++.++.
T Consensus 21 WPtr~e~~~~t~vViv~v~i~~~~~~~ 47 (60)
T 2zjs_E 21 WPTREQVVEGTQAILLFTLAFMVILGL 47 (60)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888999999999998888764
No 12
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=31.97 E-value=25 Score=19.85 Aligned_cols=27 Identities=7% Similarity=-0.014 Sum_probs=15.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9433 78 ALTIKKVYTTGYAMLGAAILTNLVLTL 104 (105)
Q Consensus 78 g~~~~~~~~~~~~v~~~s~v~t~~~~~ 104 (105)
..++++..++..+|++.+++.++.++.
T Consensus 20 WPtr~e~~~~T~vViv~v~i~~~~i~~ 46 (65)
T 3dl8_C 20 WPSRELVVKATISVIIFSLAIGVYLWI 46 (65)
T ss_dssp --------CHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888899999888887764
No 13
>1jek_A ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=22.03 E-value=86 Score=16.02 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9433 56 LAFPVSYHTANGIRHL 71 (105)
Q Consensus 56 ~~~a~~yH~~nGiRHl 71 (105)
..++..-|.-.|||.|
T Consensus 17 a~yamvqhvakgiril 32 (42)
T 1jek_A 17 ASYAMVQHIAKGIRIL 32 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHH
Confidence 5678889999999976
Done!