Your job contains 1 sequence.
>psy9433
ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPV
SYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9433
(105 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0037873 - symbol:SdhC "Succinate dehydrogenase C" ... 282 9.7e-25 1
UNIPROTKB|P70097 - symbol:SDHC "Succinate dehydrogenase c... 223 1.7e-18 1
ZFIN|ZDB-GENE-040801-26 - symbol:sdhc "succinate dehydrog... 217 7.5e-18 1
UNIPROTKB|P35720 - symbol:SDHC "Succinate dehydrogenase c... 204 1.8e-16 1
UNIPROTKB|E2R9X3 - symbol:SDHC "Uncharacterized protein" ... 203 2.3e-16 1
MGI|MGI:1913302 - symbol:Sdhc "succinate dehydrogenase co... 203 2.3e-16 1
UNIPROTKB|E2R9X4 - symbol:SDHC "Uncharacterized protein" ... 202 2.9e-16 1
UNIPROTKB|Q99643 - symbol:SDHC "Succinate dehydrogenase c... 197 9.8e-16 1
UNIPROTKB|D0VWV4 - symbol:SDHC "Succinate dehydrogenase c... 192 3.3e-15 1
RGD|1359454 - symbol:Sdhc "succinate dehydrogenase comple... 191 4.2e-15 1
POMBASE|SPCC330.12c - symbol:sdh3 "succinate dehydrogenas... 177 1.3e-13 1
CGD|CAL0004732 - symbol:orf19.1480 species:5476 "Candida ... 175 2.1e-13 1
UNIPROTKB|Q5ALU6 - symbol:CaO19.1480 "Putative uncharacte... 175 2.1e-13 1
DICTYBASE|DDB_G0275115 - symbol:sdhC "succinate dehydroge... 173 3.4e-13 1
ASPGD|ASPL0000076613 - symbol:carC species:162425 "Emeric... 155 2.8e-11 1
FB|FBgn0037860 - symbol:CG6629 species:7227 "Drosophila m... 146 4.7e-10 1
WB|WBGene00003225 - symbol:mev-1 species:6239 "Caenorhabd... 142 6.6e-10 1
UNIPROTKB|P41956 - symbol:mev-1 "Succinate dehydrogenase ... 142 6.6e-10 1
SGD|S000001624 - symbol:SDH3 "Subunit of both succinate d... 141 8.4e-10 1
UNIPROTKB|P41955 - symbol:mev-1 "Succinate dehydrogenase ... 139 1.4e-09 1
UNIPROTKB|Q9KQA9 - symbol:VC_2091 "Succinate dehydrogenas... 117 2.9e-07 1
TIGR_CMR|VC_2091 - symbol:VC_2091 "succinate dehydrogenas... 117 2.9e-07 1
TIGR_CMR|APH_0999 - symbol:APH_0999 "succinate dehydrogen... 112 1.0e-06 1
SGD|S000004724 - symbol:SHH3 "Putative mitochondrial inne... 110 2.2e-06 1
TIGR_CMR|SPO_0358 - symbol:SPO_0358 "succinate dehydrogen... 106 4.3e-06 1
TIGR_CMR|ECH_0918 - symbol:ECH_0918 "succinate dehydrogen... 104 7.0e-06 1
UNIPROTKB|P69054 - symbol:sdhC species:83333 "Escherichia... 97 3.9e-05 1
TIGR_CMR|SO_1927 - symbol:SO_1927 "succinate dehydrogenas... 96 5.0e-05 1
TIGR_CMR|NSE_0047 - symbol:NSE_0047 "succinate dehydrogen... 90 0.00021 1
>FB|FBgn0037873 [details] [associations]
symbol:SdhC "Succinate dehydrogenase C" species:7227
"Drosophila melanogaster" [GO:0006105 "succinate metabolic process"
evidence=ISS] [GO:0000104 "succinate dehydrogenase activity"
evidence=ISS] [GO:0005749 "mitochondrial respiratory chain complex
II" evidence=ISS] [GO:0006099 "tricarboxylic acid cycle"
evidence=ISS] [GO:0006121 "mitochondrial electron transport,
succinate to ubiquinone" evidence=ISS;IMP] [GO:0008177 "succinate
dehydrogenase (ubiquinone) activity" evidence=ISS] [GO:0009055
"electron carrier activity" evidence=IEA] [GO:0006979 "response to
oxidative stress" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000701 InterPro:IPR014314
InterPro:IPR018495 Pfam:PF01127 PROSITE:PS01001 GO:GO:0008340
GO:GO:0006979 GO:GO:0009055 GO:GO:0006099 eggNOG:COG2009
GO:GO:0000104 InterPro:IPR014361 PIRSF:PIRSF000178
TIGRFAMs:TIGR02970 GO:GO:0006121 GO:GO:0045281 EMBL:AY113556
HSSP:P10446 ProteinModelPortal:Q8MYW1 SMR:Q8MYW1 STRING:Q8MYW1
PaxDb:Q8MYW1 PRIDE:Q8MYW1 FlyBase:FBgn0037873 InParanoid:Q8MYW1
OrthoDB:EOG42V6ZM ArrayExpress:Q8MYW1 Bgee:Q8MYW1 Uniprot:Q8MYW1
Length = 171
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 57/107 (53%), Positives = 76/107 (71%)
Query: 1 ITSVLSITHRGTGVALTA--YALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAF 58
+TS+LSI HRGTG+AL + LGL + + DI+ V+ V+ L LS L A KFI+A+
Sbjct: 65 LTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMVEGLQLSGATLTALKFIIAY 124
Query: 59 PVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
P YHTANGIRHL+WDTGR L IK+VY+TGYAM+ + + + +L LL
Sbjct: 125 PAGYHTANGIRHLLWDTGRFLKIKEVYSTGYAMVATSFVLSAILALL 171
>UNIPROTKB|P70097 [details] [associations]
symbol:SDHC "Succinate dehydrogenase cytochrome b560
subunit, mitochondrial" species:10029 "Cricetulus griseus"
[GO:0005743 "mitochondrial inner membrane" evidence=ISS]
[GO:0005749 "mitochondrial respiratory chain complex II"
evidence=ISS] [GO:0020037 "heme binding" evidence=ISS]
InterPro:IPR000701 InterPro:IPR014314 InterPro:IPR018495
Pfam:PF01127 PROSITE:PS01000 PROSITE:PS01001 UniPathway:UPA00223
GO:GO:0016021 GO:GO:0009055 GO:GO:0046872 GO:GO:0006099
GO:GO:0020037 GO:GO:0022900 HOVERGEN:HBG003187 GO:GO:0005749
GO:GO:0000104 InterPro:IPR014361 PIRSF:PIRSF000178
TIGRFAMs:TIGR02970 EMBL:U31241 RefSeq:NP_001233755.1
ProteinModelPortal:P70097 SMR:P70097 GeneID:100689402
Uniprot:P70097
Length = 169
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 45/104 (43%), Positives = 69/104 (66%)
Query: 4 VLSITHRGTGVALTAYA--LGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVS 61
V+SI HRGTGVAL+ GL+ + L + S + F+ +L L ++ + KF+L FP+
Sbjct: 66 VMSICHRGTGVALSGGVSLFGLSALLLPGNFESYLMFIKSLCLGPALIHSAKFVLVFPLM 125
Query: 62 YHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
YH+ NGIRHLIWD G+ L+I +VY +G A+L A+L+++ L +
Sbjct: 126 YHSLNGIRHLIWDLGKGLSISQVYQSGVAVLMLAVLSSVGLAAM 169
>ZFIN|ZDB-GENE-040801-26 [details] [associations]
symbol:sdhc "succinate dehydrogenase complex,
subunit C, integral membrane protein" species:7955 "Danio rerio"
[GO:0006099 "tricarboxylic acid cycle" evidence=IEA] [GO:0000104
"succinate dehydrogenase activity" evidence=IEA] [GO:0016627
"oxidoreductase activity, acting on the CH-CH group of donors"
evidence=IEA] [GO:0045281 "succinate dehydrogenase complex"
evidence=IEA] [GO:0009055 "electron carrier activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] InterPro:IPR000701
InterPro:IPR014314 InterPro:IPR018495 Pfam:PF01127 PROSITE:PS01000
PROSITE:PS01001 ZFIN:ZDB-GENE-040801-26 GO:GO:0009055 GO:GO:0006099
eggNOG:COG2009 GeneTree:ENSGT00390000000566 HOVERGEN:HBG003187
OMA:VMSICHR OrthoDB:EOG4BCDP5 GO:GO:0000104 InterPro:IPR014361
PIRSF:PIRSF000178 TIGRFAMs:TIGR02970 GO:GO:0045281 EMBL:BX294126
IPI:IPI00618559 UniGene:Dr.1362 SMR:B0S5Q2
Ensembl:ENSDART00000145728 Uniprot:B0S5Q2
Length = 169
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 44/107 (41%), Positives = 62/107 (57%)
Query: 1 ITSVLSITHRGTGVALTA--YALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAF 58
+ +SI+HRGTG+AL++ A LA + L + + +L L KF LAF
Sbjct: 63 VPMAMSISHRGTGIALSSGISAFALAALVLPESYPYYLDLIHSLTFGPQFLAFSKFALAF 122
Query: 59 PVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
PV YHT NGIRHL WD G+ I +VY +GY +LG +LT++ L +
Sbjct: 123 PVVYHTYNGIRHLAWDAGKGFKIPEVYRSGYVVLGLTVLTSIGLAAM 169
>UNIPROTKB|P35720 [details] [associations]
symbol:SDHC "Succinate dehydrogenase cytochrome b560
subunit, mitochondrial" species:9913 "Bos taurus" [GO:0005743
"mitochondrial inner membrane" evidence=ISS;TAS] [GO:0005749
"mitochondrial respiratory chain complex II" evidence=ISS]
[GO:0020037 "heme binding" evidence=ISS] [GO:0006099 "tricarboxylic
acid cycle" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0022900 "electron transport chain" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0009055
"electron carrier activity" evidence=IEA] [GO:0000104 "succinate
dehydrogenase activity" evidence=IEA] Reactome:REACT_115420
InterPro:IPR000701 InterPro:IPR014314 InterPro:IPR018495
Pfam:PF01127 PROSITE:PS01000 PROSITE:PS01001 UniPathway:UPA00223
GO:GO:0016021 GO:GO:0009055 GO:GO:0046872 GO:GO:0006099
GO:GO:0020037 GO:GO:0022900 EMBL:S74803 EMBL:BC102062 EMBL:BT025477
EMBL:M76747 IPI:IPI00700619 PIR:A45159 RefSeq:NP_787008.1
UniGene:Bt.89093 ProteinModelPortal:P35720 SMR:P35720 IntAct:P35720
STRING:P35720 PRIDE:P35720 Ensembl:ENSBTAT00000021075 GeneID:327696
KEGG:bta:327696 CTD:6391 eggNOG:COG2009
GeneTree:ENSGT00390000000566 HOGENOM:HOG000160253
HOVERGEN:HBG003187 InParanoid:P35720 KO:K00236 OMA:VMSICHR
OrthoDB:EOG4BCDP5 NextBio:20810160 GO:GO:0005749 GO:GO:0000104
InterPro:IPR014361 PIRSF:PIRSF000178 TIGRFAMs:TIGR02970
Uniprot:P35720
Length = 169
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 42/103 (40%), Positives = 65/103 (63%)
Query: 5 LSITHRGTGVALTAYA--LGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSY 62
+SI HRGTG+AL+A GL+ + + S + FV +L L ++ KF L FP+ Y
Sbjct: 67 MSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFVKSLCLGPALIHTAKFALVFPLMY 126
Query: 63 HTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
HT NGIRHL+WD G+ LTI +++ +G A+L +L+++ L +
Sbjct: 127 HTWNGIRHLMWDLGKGLTISQLHQSGVAVLVLTVLSSVGLAAM 169
>UNIPROTKB|E2R9X3 [details] [associations]
symbol:SDHC "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045281 "succinate dehydrogenase complex"
evidence=IEA] [GO:0009055 "electron carrier activity" evidence=IEA]
[GO:0006099 "tricarboxylic acid cycle" evidence=IEA] [GO:0000104
"succinate dehydrogenase activity" evidence=IEA] InterPro:IPR000701
InterPro:IPR014314 InterPro:IPR018495 Pfam:PF01127 PROSITE:PS01001
GO:GO:0009055 GO:GO:0006099 GeneTree:ENSGT00390000000566
GO:GO:0000104 InterPro:IPR014361 PIRSF:PIRSF000178
TIGRFAMs:TIGR02970 GO:GO:0045281 EMBL:AAEX03018444
Ensembl:ENSCAFT00000020626 NextBio:20854239 Uniprot:E2R9X3
Length = 135
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 43/103 (41%), Positives = 64/103 (62%)
Query: 5 LSITHRGTGVALTAYA--LGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSY 62
+SI HRGTGVAL+A GL+ + + + S + V +L L ++ KF L FP+ Y
Sbjct: 33 MSICHRGTGVALSAGVSLFGLSALLVPGNFESHLELVKSLCLGPSLIYTAKFALVFPLMY 92
Query: 63 HTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
HT NGIRHLIWD G+ L I ++Y +G A+L +L+++ L +
Sbjct: 93 HTWNGIRHLIWDLGKGLKIPQLYQSGVAVLVLTVLSSVGLAAM 135
>MGI|MGI:1913302 [details] [associations]
symbol:Sdhc "succinate dehydrogenase complex, subunit C,
integral membrane protein" species:10090 "Mus musculus" [GO:0000104
"succinate dehydrogenase activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005743 "mitochondrial inner
membrane" evidence=IEA] [GO:0006099 "tricarboxylic acid cycle"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0009055
"electron carrier activity" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016627 "oxidoreductase activity, acting on the CH-CH group of
donors" evidence=IEA] [GO:0022900 "electron transport chain"
evidence=IEA] [GO:0045281 "succinate dehydrogenase complex"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000701 InterPro:IPR014314 InterPro:IPR018495
Pfam:PF01127 PROSITE:PS01000 PROSITE:PS01001 UniPathway:UPA00223
MGI:MGI:1913302 GO:GO:0016021 GO:GO:0009055 GO:GO:0046872
GO:GO:0006099 GO:GO:0020037 GO:GO:0022900 CTD:6391 eggNOG:COG2009
GeneTree:ENSGT00390000000566 HOGENOM:HOG000160253
HOVERGEN:HBG003187 KO:K00236 OMA:VMSICHR OrthoDB:EOG4BCDP5
GO:GO:0005749 GO:GO:0000104 InterPro:IPR014361 PIRSF:PIRSF000178
TIGRFAMs:TIGR02970 EMBL:AK002459 EMBL:AK012818 EMBL:AK032458
EMBL:AK135503 EMBL:BC005779 IPI:IPI00319111 RefSeq:NP_079597.2
UniGene:Mm.198138 ProteinModelPortal:Q9CZB0 SMR:Q9CZB0
IntAct:Q9CZB0 STRING:Q9CZB0 PhosphoSite:Q9CZB0 PaxDb:Q9CZB0
PRIDE:Q9CZB0 Ensembl:ENSMUST00000111336 GeneID:66052 KEGG:mmu:66052
UCSC:uc007dnb.2 InParanoid:Q9CZB0 ChiTaRS:SDHC NextBio:320482
Bgee:Q9CZB0 Genevestigator:Q9CZB0 GermOnline:ENSMUSG00000058076
Uniprot:Q9CZB0
Length = 169
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 39/97 (40%), Positives = 64/97 (65%)
Query: 5 LSITHRGTGVALTAYA--LGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSY 62
LS+ HRG+G+AL+ GL+ + L + S + FV +L L ++ + KF+L FP+ Y
Sbjct: 67 LSVCHRGSGIALSGGVSLFGLSALLLPGNFESYLMFVKSLCLGPTLIYSAKFVLVFPLMY 126
Query: 63 HTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTN 99
H+ NGIRHL+WD G+ L I +V+ +G A++ A+L++
Sbjct: 127 HSLNGIRHLLWDLGKGLAIPQVWLSGVAVVVLAVLSS 163
>UNIPROTKB|E2R9X4 [details] [associations]
symbol:SDHC "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045281 "succinate dehydrogenase complex"
evidence=IEA] [GO:0009055 "electron carrier activity" evidence=IEA]
[GO:0006099 "tricarboxylic acid cycle" evidence=IEA] [GO:0000104
"succinate dehydrogenase activity" evidence=IEA] InterPro:IPR000701
InterPro:IPR014314 InterPro:IPR018495 Pfam:PF01127 PROSITE:PS01000
PROSITE:PS01001 GO:GO:0009055 GO:GO:0006099
GeneTree:ENSGT00390000000566 OMA:VMSICHR GO:GO:0000104
InterPro:IPR014361 PIRSF:PIRSF000178 TIGRFAMs:TIGR02970
GO:GO:0045281 EMBL:AAEX03018444 Ensembl:ENSCAFT00000020625
Uniprot:E2R9X4
Length = 168
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 43/100 (43%), Positives = 63/100 (63%)
Query: 5 LSITHRGTGVALTAYA--LGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSY 62
+SI HRGTGVAL+A GL+ + + + S + V +L L ++ KF L FP+ Y
Sbjct: 67 MSICHRGTGVALSAGVSLFGLSALLVPGNFESHLELVKSLCLGPSLIYTAKFALVFPLMY 126
Query: 63 HTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVL 102
HT NGIRHLIWD G+ L I ++Y +G A+L +L+++ L
Sbjct: 127 HTWNGIRHLIWDLGKGLKIPQLYQSGVAVLVLTVLSSVGL 166
>UNIPROTKB|Q99643 [details] [associations]
symbol:SDHC "Succinate dehydrogenase cytochrome b560
subunit, mitochondrial" species:9606 "Homo sapiens" [GO:0000104
"succinate dehydrogenase activity" evidence=IEA] [GO:0009055
"electron carrier activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006099 "tricarboxylic acid cycle"
evidence=IEA;TAS] [GO:0055114 "oxidation-reduction process"
evidence=TAS] [GO:0009060 "aerobic respiration" evidence=TAS]
[GO:0016021 "integral to membrane" evidence=TAS] [GO:0045273
"respiratory chain complex II" evidence=TAS] [GO:0005739
"mitochondrion" evidence=TAS] [GO:0005743 "mitochondrial inner
membrane" evidence=ISS;TAS] [GO:0020037 "heme binding"
evidence=ISS] [GO:0005749 "mitochondrial respiratory chain complex
II" evidence=ISS] [GO:0022904 "respiratory electron transport
chain" evidence=TAS] [GO:0044281 "small molecule metabolic process"
evidence=TAS] Reactome:REACT_111217 InterPro:IPR000701
InterPro:IPR014314 InterPro:IPR018495 Pfam:PF01127 PROSITE:PS01000
PROSITE:PS01001 UniPathway:UPA00223 GO:GO:0016021 GO:GO:0044281
GO:GO:0009055 GO:GO:0046872 GO:GO:0006099 GO:GO:0020037
EMBL:CH471121 DrugBank:DB00139 GO:GO:0022904 CTD:6391
eggNOG:COG2009 HOGENOM:HOG000160253 HOVERGEN:HBG003187 KO:K00236
OMA:VMSICHR OrthoDB:EOG4BCDP5 GO:GO:0005749 GO:GO:0000104
InterPro:IPR014361 PIRSF:PIRSF000178 TIGRFAMs:TIGR02970 EMBL:U57877
EMBL:D49737 EMBL:AF039594 EMBL:AF039589 EMBL:AF039590 EMBL:AF039591
EMBL:AF039592 EMBL:AF039593 EMBL:AF081495 EMBL:AB201252
EMBL:AB211234 EMBL:AB211235 EMBL:AB212048 EMBL:AK294305
EMBL:AL592295 EMBL:BC020808 EMBL:BC033626 EMBL:BC066329
IPI:IPI00016968 IPI:IPI00655605 IPI:IPI00655681 IPI:IPI00655889
IPI:IPI00943958 RefSeq:NP_001030588.1 RefSeq:NP_001030589.1
RefSeq:NP_001030590.1 RefSeq:NP_002992.1 UniGene:Hs.444472
ProteinModelPortal:Q99643 SMR:Q99643 IntAct:Q99643 STRING:Q99643
PhosphoSite:Q99643 DMDM:5915811 PaxDb:Q99643 PRIDE:Q99643
Ensembl:ENST00000342751 Ensembl:ENST00000367975
Ensembl:ENST00000392169 Ensembl:ENST00000432287
Ensembl:ENST00000513009 GeneID:6391 KEGG:hsa:6391 UCSC:uc001gag.3
UCSC:uc001gah.3 UCSC:uc001gai.3 UCSC:uc001gaj.3 UCSC:uc001gak.3
GeneCards:GC01P161285 HGNC:HGNC:10682 MIM:602413 MIM:605373
MIM:606864 neXtProt:NX_Q99643 Orphanet:97286 Orphanet:44890
Orphanet:29072 PharmGKB:PA35607 InParanoid:Q99643 PhylomeDB:Q99643
BioCyc:MetaCyc:HS07014-MONOMER GenomeRNAi:6391 NextBio:24828
ArrayExpress:Q99643 Bgee:Q99643 CleanEx:HS_SDHC
Genevestigator:Q99643 GermOnline:ENSG00000143252 Uniprot:Q99643
Length = 169
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 40/103 (38%), Positives = 63/103 (61%)
Query: 5 LSITHRGTGVALTAYA--LGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSY 62
+SI HRGTG+AL+A G++ + L + S + V +L L ++ KF L FP+ Y
Sbjct: 67 MSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMY 126
Query: 63 HTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
HT NGIRHL+WD G+ L I ++Y +G +L +L+++ L +
Sbjct: 127 HTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 169
>UNIPROTKB|D0VWV4 [details] [associations]
symbol:SDHC "Succinate dehydrogenase cytochrome b560
subunit, mitochondrial" species:9823 "Sus scrofa" [GO:0005749
"mitochondrial respiratory chain complex II" evidence=IDA]
[GO:0020037 "heme binding" evidence=IDA] [GO:0005743 "mitochondrial
inner membrane" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006099 "tricarboxylic acid cycle" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0022900 "electron
transport chain" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0009055 "electron carrier activity" evidence=IEA]
[GO:0000104 "succinate dehydrogenase activity" evidence=IEA]
InterPro:IPR000701 InterPro:IPR014314 InterPro:IPR018495
Pfam:PF01127 PROSITE:PS01000 PROSITE:PS01001 UniPathway:UPA00223
GO:GO:0016021 GO:GO:0009055 GO:GO:0046872 GO:GO:0006099
GO:GO:0020037 GO:GO:0022900 GeneTree:ENSGT00390000000566 KO:K00236
OMA:VMSICHR GO:GO:0005749 GO:GO:0000104 InterPro:IPR014361
PIRSF:PIRSF000178 TIGRFAMs:TIGR02970 RefSeq:XP_003125707.2
UniGene:Ssc.23817 PDB:1ZOY PDB:1ZP0 PDB:3ABV PDB:3AE1 PDB:3AE2
PDB:3AE3 PDB:3AE4 PDB:3AE5 PDB:3AE6 PDB:3AE7 PDB:3AE8 PDB:3AE9
PDB:3AEA PDB:3AEB PDB:3AEC PDB:3AED PDB:3AEE PDB:3AEF PDB:3AEG
PDB:3SFD PDB:3SFE PDBsum:1ZOY PDBsum:1ZP0 PDBsum:3ABV PDBsum:3AE1
PDBsum:3AE2 PDBsum:3AE3 PDBsum:3AE4 PDBsum:3AE5 PDBsum:3AE6
PDBsum:3AE7 PDBsum:3AE8 PDBsum:3AE9 PDBsum:3AEA PDBsum:3AEB
PDBsum:3AEC PDBsum:3AED PDBsum:3AEE PDBsum:3AEF PDBsum:3AEG
PDBsum:3SFD PDBsum:3SFE Ensembl:ENSSSCT00000029845 GeneID:100524676
KEGG:ssc:100524676 EvolutionaryTrace:D0VWV4 Uniprot:D0VWV4
Length = 169
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 41/103 (39%), Positives = 63/103 (61%)
Query: 5 LSITHRGTGVALTAYA--LGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSY 62
+SI HRGTG+AL+A GL+ + L + S + V +L L ++ KF + FP+ Y
Sbjct: 67 MSICHRGTGIALSAGVSLFGLSALLLPGNFESHLELVKSLCLGPTLIYTAKFGIVFPLMY 126
Query: 63 HTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
HT NGIRHLIWD G+ LTI ++ +G +L +L+++ L +
Sbjct: 127 HTWNGIRHLIWDLGKGLTIPQLTQSGVVVLILTVLSSVGLAAM 169
>RGD|1359454 [details] [associations]
symbol:Sdhc "succinate dehydrogenase complex, subunit C,
integral membrane protein" species:10116 "Rattus norvegicus"
[GO:0000104 "succinate dehydrogenase activity" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006099 "tricarboxylic acid cycle"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0009055 "electron carrier activity" evidence=IEA] [GO:0045281
"succinate dehydrogenase complex" evidence=IEA] InterPro:IPR000701
InterPro:IPR014314 InterPro:IPR018495 Pfam:PF01127 PROSITE:PS01000
PROSITE:PS01001 RGD:1359454 GO:GO:0005739 GO:GO:0009055
GO:GO:0006099 CTD:6391 eggNOG:COG2009 GeneTree:ENSGT00390000000566
HOGENOM:HOG000160253 HOVERGEN:HBG003187 KO:K00236 OrthoDB:EOG4BCDP5
GO:GO:0000104 InterPro:IPR014361 PIRSF:PIRSF000178
TIGRFAMs:TIGR02970 GO:GO:0045281 EMBL:CH473985 EMBL:BC082027
IPI:IPI00371518 RefSeq:NP_001005534.1 UniGene:Rn.1698 SMR:Q641Z9
STRING:Q641Z9 Ensembl:ENSRNOT00000004228 GeneID:289217
KEGG:rno:289217 UCSC:RGD:1359454 InParanoid:Q641Z9 NextBio:629396
Genevestigator:Q641Z9 Uniprot:Q641Z9
Length = 169
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 37/103 (35%), Positives = 64/103 (62%)
Query: 5 LSITHRGTGVALTAYA--LGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSY 62
+S+ HRG+G+A++ GL+ + L + S + V +L L ++ A KF+L FP+ Y
Sbjct: 67 MSVCHRGSGIAMSGGVSLFGLSALLLPGNFESYLMLVKSLCLGPALIHAAKFVLVFPLMY 126
Query: 63 HTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
H+ NG+RHL+WD G+ L+I +V +G +L A+L++ L +
Sbjct: 127 HSLNGVRHLMWDLGKGLSISQVQLSGVTVLVLAVLSSAGLAAI 169
>POMBASE|SPCC330.12c [details] [associations]
symbol:sdh3 "succinate dehydrogenase (ubiquinone)
cytochrome b subunit (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005749
"mitochondrial respiratory chain complex II" evidence=ISS]
[GO:0006099 "tricarboxylic acid cycle" evidence=IEA] [GO:0006105
"succinate metabolic process" evidence=IC] [GO:0006121
"mitochondrial electron transport, succinate to ubiquinone"
evidence=ISS] [GO:0008177 "succinate dehydrogenase (ubiquinone)
activity" evidence=ISS] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000701 InterPro:IPR014314 Pfam:PF01127
UniPathway:UPA00223 PomBase:SPCC330.12c GO:GO:0016021 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0006099
eggNOG:COG2009 HOGENOM:HOG000160253 KO:K00236 OMA:VMSICHR
GO:GO:0005749 InterPro:IPR014361 PIRSF:PIRSF000178
TIGRFAMs:TIGR02970 GO:GO:0006121 GO:GO:0008177 GO:GO:0006105
PIR:T41322 RefSeq:NP_587712.1 ProteinModelPortal:O74882
STRING:O74882 EnsemblFungi:SPCC330.12c.1 GeneID:2539100
KEGG:spo:SPCC330.12c OrthoDB:EOG4TXG2C NextBio:20800272
Uniprot:O74882
Length = 180
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 46/109 (42%), Positives = 67/109 (61%)
Query: 1 ITSVLSITHRGTG--VA--LTAYALG-----LAGVGL-TTDINSVVSFVDALNLSAPILL 50
+T LS HR TG VA L A+A+G LAG L T I+ ++ V I +
Sbjct: 71 LTWYLSSLHRITGCVVAGTLYAFAMGYLVAPLAGYSLDTATISGLIQQVPTW-----IKV 125
Query: 51 AGKFILAFPVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTN 99
KF++++P+++H NGIRHLIWDT + L++K VY TGYA+L ++LT+
Sbjct: 126 PAKFVISYPLTFHIFNGIRHLIWDTTKELSLKGVYRTGYAVLALSVLTS 174
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 38/111 (34%), Positives = 58/111 (52%)
Query: 1 ITSVLSITHRGTGVALTAYALG-----LAGVGL-TTDINSVVSFVDALNLSAPILLAGKF 54
++S+ IT L A+A+G LAG L T I+ ++ V I + KF
Sbjct: 75 LSSLHRITGCVVAGTLYAFAMGYLVAPLAGYSLDTATISGLIQQVPTW-----IKVPAKF 129
Query: 55 ILAFPVSYHTANGIRHLIWDTGRALTIKKVYTTGYA-------------ML 92
++++P+++H NGIRHLIWDT + L++K VY TGYA M+
Sbjct: 130 VISYPLTFHIFNGIRHLIWDTTKELSLKGVYRTGYAVLALSVLTSGYFAMI 180
>CGD|CAL0004732 [details] [associations]
symbol:orf19.1480 species:5476 "Candida albicans" [GO:0006099
"tricarboxylic acid cycle" evidence=NAS] [GO:0000104 "succinate
dehydrogenase activity" evidence=NAS] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000701 InterPro:IPR014314 InterPro:IPR018495
Pfam:PF01127 PROSITE:PS01000 PROSITE:PS01001 CGD:CAL0004732
GO:GO:0005886 GO:GO:0009055 GO:GO:0006099 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG2009 HOGENOM:HOG000160253 KO:K00236
GO:GO:0000104 InterPro:IPR014361 PIRSF:PIRSF000178
TIGRFAMs:TIGR02970 GO:GO:0045281 RefSeq:XP_722390.1
RefSeq:XP_722529.1 ProteinModelPortal:Q5ALU6 STRING:Q5ALU6
GeneID:3635728 GeneID:3636002 KEGG:cal:CaO19.1480
KEGG:cal:CaO19.9055 Uniprot:Q5ALU6
Length = 176
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 45/111 (40%), Positives = 57/111 (51%)
Query: 1 ITSVLSITHRGTGVALTA--YALGLAGVGLTTDIN---SVVSFVDALNLSAPILLAG-KF 54
+T ++S HR TGVA+ YAL G T+ +N + V A G K
Sbjct: 66 LTWIMSSFHRITGVAMAGAFYAL-TCGFAATSILNIPFDTTTLVSAFTTLPTFAQYGIKA 124
Query: 55 ILAFPVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
I A+P YH NGIRHL+WD G+ LTI VY TGYA+L A + L L
Sbjct: 125 ICAYPFVYHIGNGIRHLVWDFGKELTIPGVYRTGYAVLAATAVIGSYLAFL 175
>UNIPROTKB|Q5ALU6 [details] [associations]
symbol:CaO19.1480 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0000104 "succinate
dehydrogenase activity" evidence=NAS] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0006099 "tricarboxylic acid cycle" evidence=NAS]
InterPro:IPR000701 InterPro:IPR014314 InterPro:IPR018495
Pfam:PF01127 PROSITE:PS01000 PROSITE:PS01001 CGD:CAL0004732
GO:GO:0005886 GO:GO:0009055 GO:GO:0006099 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG2009 HOGENOM:HOG000160253 KO:K00236
GO:GO:0000104 InterPro:IPR014361 PIRSF:PIRSF000178
TIGRFAMs:TIGR02970 GO:GO:0045281 RefSeq:XP_722390.1
RefSeq:XP_722529.1 ProteinModelPortal:Q5ALU6 STRING:Q5ALU6
GeneID:3635728 GeneID:3636002 KEGG:cal:CaO19.1480
KEGG:cal:CaO19.9055 Uniprot:Q5ALU6
Length = 176
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 45/111 (40%), Positives = 57/111 (51%)
Query: 1 ITSVLSITHRGTGVALTA--YALGLAGVGLTTDIN---SVVSFVDALNLSAPILLAG-KF 54
+T ++S HR TGVA+ YAL G T+ +N + V A G K
Sbjct: 66 LTWIMSSFHRITGVAMAGAFYAL-TCGFAATSILNIPFDTTTLVSAFTTLPTFAQYGIKA 124
Query: 55 ILAFPVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
I A+P YH NGIRHL+WD G+ LTI VY TGYA+L A + L L
Sbjct: 125 ICAYPFVYHIGNGIRHLVWDFGKELTIPGVYRTGYAVLAATAVIGSYLAFL 175
>DICTYBASE|DDB_G0275115 [details] [associations]
symbol:sdhC "succinate dehydrogenase (ubiquinone)"
species:44689 "Dictyostelium discoideum" [GO:0045281 "succinate
dehydrogenase complex" evidence=IEA] [GO:0016627 "oxidoreductase
activity, acting on the CH-CH group of donors" evidence=IEA]
[GO:0006099 "tricarboxylic acid cycle" evidence=IEA;ISS]
[GO:0000104 "succinate dehydrogenase activity" evidence=IEA]
[GO:0020037 "heme binding" evidence=ISS] [GO:0006121 "mitochondrial
electron transport, succinate to ubiquinone" evidence=ISS]
[GO:0005749 "mitochondrial respiratory chain complex II"
evidence=ISS] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA;ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0022900 "electron transport chain" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000701
InterPro:IPR014314 Pfam:PF01127 PROSITE:PS01000 PROSITE:PS01001
UniPathway:UPA00223 dictyBase:DDB_G0275115 GO:GO:0016021
GO:GO:0046872 GenomeReviews:CM000151_GR GO:GO:0006099 GO:GO:0020037
EMBL:AAFI02000013 eggNOG:COG2009 KO:K00236 GO:GO:0005749
GO:GO:0000104 TIGRFAMs:TIGR02970 GO:GO:0006121 RefSeq:XP_643757.1
ProteinModelPortal:Q8T2T5 STRING:Q8T2T5 PRIDE:Q8T2T5
EnsemblProtists:DDB0231385 GeneID:8619802 KEGG:ddi:DDB_G0275115
OMA:TITEKRI ProtClustDB:CLSZ2430978 Uniprot:Q8T2T5
Length = 192
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 35/107 (32%), Positives = 61/107 (57%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILL-AGKFILAFP 59
+ +V+SI HR TG+ L GLAGV L + + ++ L+ P L+ KF +A P
Sbjct: 84 LPAVMSIMHRATGICLALGITGLAGVTLFAP-HDAIHYIQLLHTQYPALVYPAKFAVALP 142
Query: 60 VSYHTANGIRHLIWD-TGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
++YH G+RH+IWD T + L+I ++ ++G +L + + + T +
Sbjct: 143 LTYHFCTGVRHIIWDETVKGLSISQIESSGKVLLAVVAVLSTIFTFV 189
>ASPGD|ASPL0000076613 [details] [associations]
symbol:carC species:162425 "Emericella nidulans"
[GO:0008177 "succinate dehydrogenase (ubiquinone) activity"
evidence=IEA;RCA] [GO:0035690 "cellular response to drug"
evidence=IEA] [GO:0006099 "tricarboxylic acid cycle" evidence=RCA]
[GO:0045282 "plasma membrane succinate dehydrogenase complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000701 InterPro:IPR014314 InterPro:IPR018495
Pfam:PF01127 PROSITE:PS01000 PROSITE:PS01001 GO:GO:0009055
GO:GO:0006099 EMBL:BN001303 EMBL:AACD01000161 eggNOG:COG2009
HOGENOM:HOG000160253 KO:K00236 GO:GO:0000104 TIGRFAMs:TIGR02970
OMA:GWHLESA GO:GO:0045281 OrthoDB:EOG4TXG2C RefSeq:XP_682062.1
ProteinModelPortal:Q5ASD7 STRING:Q5ASD7
EnsemblFungi:CADANIAT00006269 GeneID:2868433 KEGG:ani:AN8793.2
Uniprot:Q5ASD7
Length = 191
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 45/111 (40%), Positives = 62/111 (55%)
Query: 1 ITSVLSITHRGTGVAL--------TAY-ALGLAGVGLTTDINSVVSFVDALNLSAPILLA 51
IT +S HR TG+ L TAY A L G L + + SF L L+A L
Sbjct: 82 ITWYMSALHRVTGIILSGPLYIFATAYLAAPLFGWHLES-ASLAASFA-TLPLAAKFSL- 138
Query: 52 GKFILAFPVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVL 102
K + A P +YH+ NG+RHL+WDTGR +T K+V TG+ ++G +I + L L
Sbjct: 139 -KTLAALPFTYHSFNGLRHLMWDTGRGITNKQVIQTGWTVVGLSIASALYL 188
>FB|FBgn0037860 [details] [associations]
symbol:CG6629 species:7227 "Drosophila melanogaster"
[GO:0006121 "mitochondrial electron transport, succinate to
ubiquinone" evidence=ISS] [GO:0000104 "succinate dehydrogenase
activity" evidence=ISS] [GO:0006105 "succinate metabolic process"
evidence=ISS] [GO:0006099 "tricarboxylic acid cycle" evidence=ISS]
[GO:0005749 "mitochondrial respiratory chain complex II"
evidence=ISS] InterPro:IPR000701 InterPro:IPR014314 Pfam:PF01127
EMBL:AE014297 GO:GO:0006099 eggNOG:COG2009
GeneTree:ENSGT00390000000566 KO:K00236 GO:GO:0000104
TIGRFAMs:TIGR02970 GO:GO:0045281 EMBL:AY089360 RefSeq:NP_650041.1
UniGene:Dm.5074 SMR:Q9VGT9 IntAct:Q9VGT9 MINT:MINT-1012381
STRING:Q9VGT9 EnsemblMetazoa:FBtr0082380 GeneID:41324
KEGG:dme:Dmel_CG6629 UCSC:CG6629-RA FlyBase:FBgn0037860
InParanoid:Q9VGT9 OMA:YATGYVA OrthoDB:EOG4MGQR2 GenomeRNAi:41324
NextBio:823318 Uniprot:Q9VGT9
Length = 261
Score = 146 (56.5 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 33/104 (31%), Positives = 54/104 (51%)
Query: 1 ITSVLSITHRGTGVALTAYA--LGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAF 58
+TS LS R +G L + +G++G+ L D+ + V+ + + +A K ++
Sbjct: 97 LTSTLSAFLRISGFVLAVFVWFVGISGLCLQGDMEGFIKKVEKCDCHGMVTMA-KVMVTM 155
Query: 59 PVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVL 102
P +YHT G RHLIW + LTI ++Y TGY + I + L
Sbjct: 156 PFAYHTVAGTRHLIWYLNKFLTIPEIYATGYVAVALTIALSAFL 199
>WB|WBGene00003225 [details] [associations]
symbol:mev-1 species:6239 "Caenorhabditis elegans"
[GO:0016627 "oxidoreductase activity, acting on the CH-CH group of
donors" evidence=IEA] [GO:0000104 "succinate dehydrogenase
activity" evidence=IEA] [GO:0006099 "tricarboxylic acid cycle"
evidence=IEA] [GO:0045281 "succinate dehydrogenase complex"
evidence=IEA] [GO:0009055 "electron carrier activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0006121 "mitochondrial electron transport,
succinate to ubiquinone" evidence=IMP] [GO:0005749 "mitochondrial
respiratory chain complex II" evidence=ISS] [GO:0020037 "heme
binding" evidence=ISS] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000701 InterPro:IPR014314 InterPro:IPR018495
Pfam:PF01127 PROSITE:PS01000 PROSITE:PS01001 UniPathway:UPA00223
GO:GO:0016021 GO:GO:0009792 GO:GO:0006898 GO:GO:0040010
GO:GO:0009055 GO:GO:0046872 GO:GO:0000003 GO:GO:0006099
GO:GO:0020037 eggNOG:COG2009 GeneTree:ENSGT00390000000566
HOGENOM:HOG000160253 KO:K00236 GO:GO:0005749 GO:GO:0000104
InterPro:IPR014361 PIRSF:PIRSF000178 TIGRFAMs:TIGR02970 OMA:GWHLESA
EMBL:L26545 EMBL:Z29443 PIR:B53189 RefSeq:NP_499283.1
ProteinModelPortal:P41956 SMR:P41956 STRING:P41956 PaxDb:P41956
EnsemblMetazoa:T07C4.7.1 EnsemblMetazoa:T07C4.7.2 GeneID:260040
KEGG:cel:CELE_T07C4.7 UCSC:T07C4.7.1 CTD:260040 WormBase:T07C4.7
InParanoid:P41956 NextBio:952798 GO:GO:0006121 Uniprot:P41956
Length = 182
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 35/102 (34%), Positives = 58/102 (56%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVG---LTTDINSVVSFVDALNLSAPILLAGKFILA 57
+T +LS HR +G + L + G+G L D + V F+ + NL + K+I+A
Sbjct: 65 LTWMLSGFHRISGCVMAGTLL-VGGIGFAVLPFDFTAFVDFIRSWNLPCAVTAVFKYIIA 123
Query: 58 FPVSYHTANGIRHLIWDTGRALT-IKKVYTTGYAMLG-AAIL 97
FP+ +HT NGIR L +D + + + ++Y +GY + G +AIL
Sbjct: 124 FPIIFHTLNGIRFLGFDLAKGVNNVGQIYKSGYLVSGLSAIL 165
>UNIPROTKB|P41956 [details] [associations]
symbol:mev-1 "Succinate dehydrogenase cytochrome b560
subunit, mitochondrial" species:6239 "Caenorhabditis elegans"
[GO:0005749 "mitochondrial respiratory chain complex II"
evidence=ISS] [GO:0020037 "heme binding" evidence=ISS] [GO:0005743
"mitochondrial inner membrane" evidence=ISS] InterPro:IPR000701
InterPro:IPR014314 InterPro:IPR018495 Pfam:PF01127 PROSITE:PS01000
PROSITE:PS01001 UniPathway:UPA00223 GO:GO:0016021 GO:GO:0009792
GO:GO:0006898 GO:GO:0040010 GO:GO:0009055 GO:GO:0046872
GO:GO:0000003 GO:GO:0006099 GO:GO:0020037 eggNOG:COG2009
GeneTree:ENSGT00390000000566 HOGENOM:HOG000160253 KO:K00236
GO:GO:0005749 GO:GO:0000104 InterPro:IPR014361 PIRSF:PIRSF000178
TIGRFAMs:TIGR02970 OMA:GWHLESA EMBL:L26545 EMBL:Z29443 PIR:B53189
RefSeq:NP_499283.1 ProteinModelPortal:P41956 SMR:P41956
STRING:P41956 PaxDb:P41956 EnsemblMetazoa:T07C4.7.1
EnsemblMetazoa:T07C4.7.2 GeneID:260040 KEGG:cel:CELE_T07C4.7
UCSC:T07C4.7.1 CTD:260040 WormBase:T07C4.7 InParanoid:P41956
NextBio:952798 GO:GO:0006121 Uniprot:P41956
Length = 182
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 35/102 (34%), Positives = 58/102 (56%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVG---LTTDINSVVSFVDALNLSAPILLAGKFILA 57
+T +LS HR +G + L + G+G L D + V F+ + NL + K+I+A
Sbjct: 65 LTWMLSGFHRISGCVMAGTLL-VGGIGFAVLPFDFTAFVDFIRSWNLPCAVTAVFKYIIA 123
Query: 58 FPVSYHTANGIRHLIWDTGRALT-IKKVYTTGYAMLG-AAIL 97
FP+ +HT NGIR L +D + + + ++Y +GY + G +AIL
Sbjct: 124 FPIIFHTLNGIRFLGFDLAKGVNNVGQIYKSGYLVSGLSAIL 165
>SGD|S000001624 [details] [associations]
symbol:SDH3 "Subunit of both succinate dehydrogenase and of
TIM22 translocase" species:4932 "Saccharomyces cerevisiae"
[GO:0006121 "mitochondrial electron transport, succinate to
ubiquinone" evidence=TAS] [GO:0016021 "integral to membrane"
evidence=ISM;IEA] [GO:0042721 "mitochondrial inner membrane protein
insertion complex" evidence=IDA] [GO:0006099 "tricarboxylic acid
cycle" evidence=IEA;TAS] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0045333 "cellular respiration" evidence=IMP]
[GO:0009055 "electron carrier activity" evidence=IEA] [GO:0000104
"succinate dehydrogenase activity" evidence=IEA] [GO:0016627
"oxidoreductase activity, acting on the CH-CH group of donors"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0005749
"mitochondrial respiratory chain complex II" evidence=IDA]
[GO:0045039 "protein import into mitochondrial inner membrane"
evidence=IMP] [GO:0048038 "quinone binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0022900 "electron
transport chain" evidence=IEA] [GO:0008177 "succinate dehydrogenase
(ubiquinone) activity" evidence=IGI] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] InterPro:IPR000701 InterPro:IPR018495
Pfam:PF01127 PROSITE:PS01000 PROSITE:PS01001 UniPathway:UPA00223
SGD:S000001624 GO:GO:0016021 GO:GO:0009055 GO:GO:0046872
GO:GO:0006099 EMBL:BK006944 GO:GO:0048038 eggNOG:COG2009
HOGENOM:HOG000160253 KO:K00236 GO:GO:0005749 GO:GO:0000104
GO:GO:0006121 PDB:1ORZ PDB:1PB4 PDBsum:1ORZ PDBsum:1PB4
GO:GO:0042721 GO:GO:0045039 EMBL:Z25464 OrthoDB:EOG4TXG2C
EMBL:X73884 EMBL:Z28141 EMBL:AY693024 PIR:S37970 RefSeq:NP_012781.1
ProteinModelPortal:P33421 SMR:P33421 DIP:DIP-5310N IntAct:P33421
MINT:MINT-502608 STRING:P33421 PaxDb:P33421 PeptideAtlas:P33421
EnsemblFungi:YKL141W GeneID:853716 KEGG:sce:YKL141W CYGD:YKL141w
GeneTree:ENSGT00510000053031 OMA:SVHRISH NextBio:974731
Genevestigator:P33421 GermOnline:YKL141W Uniprot:P33421
Length = 198
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 36/84 (42%), Positives = 48/84 (57%)
Query: 22 GLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTANGIRHLIWDTGRALTI 81
GL G+GLTT+ S + + + G F F + Y A IRHLIWDT + LT+
Sbjct: 118 GLLGLGLTTEKVSNW-YHQKFSKITEWSIKGSFAYLFAIHYGGA--IRHLIWDTAKELTL 174
Query: 82 KKVYTTGYAMLG-AAILTNLVLTL 104
K VY TGYA++G A+L +LTL
Sbjct: 175 KGVYRTGYALIGFTAVLGTYLLTL 198
>UNIPROTKB|P41955 [details] [associations]
symbol:mev-1 "Succinate dehydrogenase cytochrome b560
subunit, mitochondrial" species:6238 "Caenorhabditis briggsae"
[GO:0005743 "mitochondrial inner membrane" evidence=ISS]
[GO:0005749 "mitochondrial respiratory chain complex II"
evidence=ISS] [GO:0020037 "heme binding" evidence=ISS]
InterPro:IPR000701 InterPro:IPR014314 InterPro:IPR018495
Pfam:PF01127 PROSITE:PS01000 PROSITE:PS01001 UniPathway:UPA00223
GO:GO:0016021 GO:GO:0009055 GO:GO:0046872 GO:GO:0006099
GO:GO:0020037 GO:GO:0022900 eggNOG:COG2009 HOGENOM:HOG000160253
KO:K00236 GO:GO:0005749 GO:GO:0000104 InterPro:IPR014361
PIRSF:PIRSF000178 TIGRFAMs:TIGR02970 EMBL:L26546 EMBL:HE601354
RefSeq:XP_002641307.1 ProteinModelPortal:P41955 STRING:P41955
EnsemblMetazoa:CBG24607 GeneID:8583299 KEGG:cbr:CBG24607
CTD:8583299 WormBase:CBG24607 OMA:GWHLESA Uniprot:P41955
Length = 184
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 33/107 (30%), Positives = 56/107 (52%)
Query: 1 ITSVLSITHRGTGVALTAYAL--GLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAF 58
+T +LS HR +G + L GL L D + V ++ NL + K+I+AF
Sbjct: 65 LTWMLSGFHRISGCVMAGTLLVGGLGFAVLPLDFTTFVEYIRGWNLPCAVTAVFKYIIAF 124
Query: 59 PVSYHTANGIRHLIWDTGRAL-TIKKVYTTGYAMLGAAILTNLVLTL 104
P+ +HT NGIR L +D + + I +VY +G+ + G + + L + +
Sbjct: 125 PIIFHTLNGIRFLGFDLAKGVDNIGQVYKSGWLVFGVSAVIALAIVI 171
>UNIPROTKB|Q9KQA9 [details] [associations]
symbol:VC_2091 "Succinate dehydrogenase, cytochrome b556
subunit" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0000104 "succinate dehydrogenase activity"
evidence=ISS] [GO:0006099 "tricarboxylic acid cycle" evidence=ISS]
[GO:0009055 "electron carrier activity" evidence=ISS] [GO:0045282
"plasma membrane succinate dehydrogenase complex" evidence=ISS]
InterPro:IPR000701 InterPro:IPR014314 InterPro:IPR018495
Pfam:PF01127 PROSITE:PS01000 PROSITE:PS01001 GO:GO:0009055
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006099 GO:GO:0000104
InterPro:IPR014361 PIRSF:PIRSF000178 TIGRFAMs:TIGR02970
GO:GO:0045282 KO:K00241 OMA:IVKFIVW ProtClustDB:PRK09487
HSSP:P10446 PIR:A82119 RefSeq:NP_231723.1 ProteinModelPortal:Q9KQA9
SMR:Q9KQA9 DNASU:2613347 GeneID:2613347 KEGG:vch:VC2091
PATRIC:20083213 Uniprot:Q9KQA9
Length = 130
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 36/108 (33%), Positives = 59/108 (54%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFIL---A 57
I+++ SI HR +GV +T A+G+ L+ ++S V F++A N+ + KF+L
Sbjct: 24 ISAIASILHRVSGV-ITFVAVGILLWLLSLSLSSPVGFMEASNIVDSFFV--KFVLWGIL 80
Query: 58 FPVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
++YH A GIRHL+ D G ++ +G A A +VL+LL
Sbjct: 81 TALAYHIAGGIRHLLMDLGHFEELE----SGAASAKVAFAATVVLSLL 124
>TIGR_CMR|VC_2091 [details] [associations]
symbol:VC_2091 "succinate dehydrogenase, cytochrome b556
subunit" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000104
"succinate dehydrogenase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] [GO:0009055 "electron
carrier activity" evidence=ISS] [GO:0045282 "plasma membrane
succinate dehydrogenase complex" evidence=ISS] InterPro:IPR000701
InterPro:IPR014314 InterPro:IPR018495 Pfam:PF01127 PROSITE:PS01000
PROSITE:PS01001 GO:GO:0009055 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006099 GO:GO:0000104
InterPro:IPR014361 PIRSF:PIRSF000178 TIGRFAMs:TIGR02970
GO:GO:0045282 KO:K00241 OMA:IVKFIVW ProtClustDB:PRK09487
HSSP:P10446 PIR:A82119 RefSeq:NP_231723.1 ProteinModelPortal:Q9KQA9
SMR:Q9KQA9 DNASU:2613347 GeneID:2613347 KEGG:vch:VC2091
PATRIC:20083213 Uniprot:Q9KQA9
Length = 130
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 36/108 (33%), Positives = 59/108 (54%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFIL---A 57
I+++ SI HR +GV +T A+G+ L+ ++S V F++A N+ + KF+L
Sbjct: 24 ISAIASILHRVSGV-ITFVAVGILLWLLSLSLSSPVGFMEASNIVDSFFV--KFVLWGIL 80
Query: 58 FPVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
++YH A GIRHL+ D G ++ +G A A +VL+LL
Sbjct: 81 TALAYHIAGGIRHLLMDLGHFEELE----SGAASAKVAFAATVVLSLL 124
>TIGR_CMR|APH_0999 [details] [associations]
symbol:APH_0999 "succinate dehydrogenase, cytochrome b556
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000104
"succinate dehydrogenase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] [GO:0009055 "electron
carrier activity" evidence=ISS] [GO:0045282 "plasma membrane
succinate dehydrogenase complex" evidence=ISS] InterPro:IPR000701
InterPro:IPR014314 InterPro:IPR018495 Pfam:PF01127 PROSITE:PS01000
PROSITE:PS01001 GO:GO:0009055 GO:GO:0006099 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG2009 HOGENOM:HOG000160253
GO:GO:0000104 InterPro:IPR014361 PIRSF:PIRSF000178
TIGRFAMs:TIGR02970 GO:GO:0045281 KO:K00241 OMA:WALMHHM
RefSeq:YP_505561.1 ProteinModelPortal:Q2GJ90 STRING:Q2GJ90
GeneID:3930141 KEGG:aph:APH_0999 PATRIC:20950734
ProtClustDB:CLSK747292 BioCyc:APHA212042:GHPM-1008-MONOMER
Uniprot:Q2GJ90
Length = 127
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 37/106 (34%), Positives = 55/106 (51%)
Query: 1 ITSVLSITHRGTGV----ALTAYALGLAGVGLTTDINSVVSFVDA-LNLSAPILLAGKFI 55
IT+ LSITHR TGV LT + L + T+ + +D+ + + ++ G I
Sbjct: 18 ITAWLSITHRITGVLLLMGLTLFTWLLISLHWTS--GQLWGLLDSWIGVLLVKVIIGGCI 75
Query: 56 LAFPVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLV 101
A + YH NGIRHL WD G + +G+ MLG A+ T+L+
Sbjct: 76 AA--LCYHYYNGIRHLFWDCGIGFGKSEATFSGWLMLGFAV-TSLI 118
>SGD|S000004724 [details] [associations]
symbol:SHH3 "Putative mitochondrial inner membrane protein of
unknown function" species:4932 "Saccharomyces cerevisiae"
[GO:0045281 "succinate dehydrogenase complex" evidence=IEA]
[GO:0005743 "mitochondrial inner membrane" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048038 "quinone binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA;ISM] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006099 "tricarboxylic acid
cycle" evidence=IEA] [GO:0022900 "electron transport chain"
evidence=IEA] [GO:0000104 "succinate dehydrogenase activity"
evidence=IEA] [GO:0009055 "electron carrier activity" evidence=IEA]
[GO:0016627 "oxidoreductase activity, acting on the CH-CH group of
donors" evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000701
InterPro:IPR014314 InterPro:IPR018495 Pfam:PF01127 PROSITE:PS01000
PROSITE:PS01001 SGD:S000004724 GO:GO:0016021 GO:GO:0005743
GO:GO:0009055 GO:GO:0046872 GO:GO:0006099 GO:GO:0022900
EMBL:BK006946 GO:GO:0048038 EMBL:Z49702 eggNOG:COG2009
HOGENOM:HOG000160253 KO:K00236 GO:GO:0000104 TIGRFAMs:TIGR02970
GO:GO:0045281 OrthoDB:EOG4TXG2C GeneTree:ENSGT00510000053031
EMBL:AY557968 PIR:S54580 RefSeq:NP_013836.1
ProteinModelPortal:Q04487 SMR:Q04487 DIP:DIP-5316N MINT:MINT-534886
STRING:Q04487 EnsemblFungi:YMR118C GeneID:855145 KEGG:sce:YMR118C
CYGD:YMR118c OMA:FVPRIST NextBio:978543 Genevestigator:Q04487
GermOnline:YMR118C Uniprot:Q04487
Length = 196
Score = 110 (43.8 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 40/107 (37%), Positives = 53/107 (49%)
Query: 5 LSITHRGTGV--ALTAYALGLAGVGLTTDINSVVSFVDALNL----SAP--ILLAGKFIL 56
LS HR +GV AL YA + +G+TT + +F D LN P K
Sbjct: 90 LSSLHRISGVLLALGFYAFTIT-LGVTTIMGMDTTFQD-LNKWYHEKMPKWSQWVAKGSA 147
Query: 57 AFPVSYHTANGIRHLIWDTGRALTIKKVYTTGYAML-GAAILTNLVL 102
A+ ++H NGIRHLIWD G LT + V TG +L G +L +L
Sbjct: 148 AYLFAFHFGNGIRHLIWDMGYELTNRGVIKTGSIVLAGTLVLGTYLL 194
>TIGR_CMR|SPO_0358 [details] [associations]
symbol:SPO_0358 "succinate dehydrogenase, cytochrome b556
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000104
"succinate dehydrogenase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] [GO:0009055 "electron
carrier activity" evidence=ISS] [GO:0045282 "plasma membrane
succinate dehydrogenase complex" evidence=ISS] InterPro:IPR000701
InterPro:IPR014314 InterPro:IPR018495 Pfam:PF01127 PROSITE:PS01001
GO:GO:0009055 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006099
HOGENOM:HOG000160253 GO:GO:0000104 InterPro:IPR014361
PIRSF:PIRSF000178 TIGRFAMs:TIGR02970 GO:GO:0045281 KO:K00241
OMA:WALMHHM RefSeq:YP_165621.1 ProteinModelPortal:Q5LXF0
GeneID:3196468 KEGG:sil:SPO0358 PATRIC:23373975
ProtClustDB:CLSK933241 Uniprot:Q5LXF0
Length = 128
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 36/110 (32%), Positives = 53/110 (48%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVGLTTDIN-SVVSFVDALNLSAPILLAGKFILAFP 59
+TS+ SI R TG AL AL + L + + D + S L G ++A
Sbjct: 22 LTSITSILTRITGNALLFAALLIVWWFLAAATSPEYFAVADGVITS----LIGDLVMALS 77
Query: 60 VS---YHTANGIRHLIWDTGRALTIKKVYTTGYAM-LGAAILTNLVLTLL 105
+ YHT GIRHLIWD L + G+A+ +G+ +LT L L ++
Sbjct: 78 LWGLWYHTLAGIRHLIWDNALGLDLPTAEKLGWAVVIGSVLLTILTLVVI 127
>TIGR_CMR|ECH_0918 [details] [associations]
symbol:ECH_0918 "succinate dehydrogenase, cytochrome b556
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000104 "succinate dehydrogenase activity" evidence=ISS]
[GO:0006099 "tricarboxylic acid cycle" evidence=ISS] [GO:0009055
"electron carrier activity" evidence=ISS] [GO:0045282 "plasma
membrane succinate dehydrogenase complex" evidence=ISS]
InterPro:IPR000701 InterPro:IPR014314 InterPro:IPR018495
Pfam:PF01127 PROSITE:PS01001 GO:GO:0009055 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006099 eggNOG:COG2009
HOGENOM:HOG000160253 GO:GO:0000104 InterPro:IPR014361
PIRSF:PIRSF000178 TIGRFAMs:TIGR02970 GO:GO:0045281 KO:K00241
RefSeq:YP_507709.1 ProteinModelPortal:Q2GFS4 STRING:Q2GFS4
GeneID:3927388 KEGG:ech:ECH_0918 PATRIC:20577234
ProtClustDB:CLSK749090 BioCyc:ECHA205920:GJNR-921-MONOMER
Uniprot:Q2GFS4
Length = 128
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 32/103 (31%), Positives = 52/103 (50%)
Query: 5 LSITHRGTGVALTAYALGLA-GVGLTTDINSVVSFVDALNLSAPILLAGKFILAF----P 59
LSI HR TG+ L L L+ G L+ VV + + ++ + L ++ F
Sbjct: 20 LSIMHRFTGMILFLGLLVLSWGFILSFLCPQVVYRICSFFCNSYVSLYSLKLITFIWLNV 79
Query: 60 VSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVL 102
+ YH NGIRH+ WD G L+ V TTG ++ ++++ +L
Sbjct: 80 LCYHYMNGIRHIFWDLGLGLSKSAVRTTGVVVVFLCLVSSFIL 122
>UNIPROTKB|P69054 [details] [associations]
symbol:sdhC species:83333 "Escherichia coli K-12"
[GO:0008177 "succinate dehydrogenase (ubiquinone) activity"
evidence=IMP] [GO:0048039 "ubiquinone binding" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0045281
"succinate dehydrogenase complex" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0022900 "electron transport chain"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0020037 "heme binding" evidence=IMP] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0006099 "tricarboxylic acid cycle"
evidence=IEA] [GO:0009060 "aerobic respiration" evidence=IEP]
[GO:0017004 "cytochrome complex assembly" evidence=IMP] [GO:0009055
"electron carrier activity" evidence=IEA;IDA] InterPro:IPR000701
InterPro:IPR014314 InterPro:IPR018495 Pfam:PF01127 PROSITE:PS01000
PROSITE:PS01001 UniPathway:UPA00223 GO:GO:0016021 GO:GO:0005886
GO:GO:0009055 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006099 GO:GO:0017004
GO:GO:0020037 GO:GO:0022900 GO:GO:0009060 eggNOG:COG2009
InterPro:IPR014361 PIRSF:PIRSF000178 TIGRFAMs:TIGR02970 EMBL:J01619
EMBL:X00980 GO:GO:0048039 GO:GO:0008177 PDB:1NEK PDB:1NEN PDB:2ACZ
PDB:2AD0 PDB:2WDQ PDB:2WDR PDB:2WDV PDB:2WP9 PDB:2WS3 PDB:2WU2
PDB:2WU5 PDBsum:1NEK PDBsum:1NEN PDBsum:2ACZ PDBsum:2AD0
PDBsum:2WDQ PDBsum:2WDR PDBsum:2WDV PDBsum:2WP9 PDBsum:2WS3
PDBsum:2WU2 PDBsum:2WU5 GO:GO:0045281 HOGENOM:HOG000160252
KO:K00241 EMBL:M28989 PIR:A28836 RefSeq:NP_415249.1
RefSeq:YP_489001.1 ProteinModelPortal:P69054 SMR:P69054
IntAct:P69054 EnsemblBacteria:EBESCT00000003061
EnsemblBacteria:EBESCT00000017698 GeneID:12930948 GeneID:945316
KEGG:ecj:Y75_p0701 KEGG:eco:b0721 PATRIC:32116637 EchoBASE:EB0926
EcoGene:EG10933 OMA:IVKFIVW ProtClustDB:PRK09487
BioCyc:EcoCyc:SDH-MEMB1 BioCyc:ECOL316407:JW0711-MONOMER
BioCyc:MetaCyc:SDH-MEMB1 EvolutionaryTrace:P69054
Genevestigator:P69054 Uniprot:P69054
Length = 129
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 32/108 (29%), Positives = 55/108 (50%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFIL---A 57
IT++ SI HR +GV +T A+G+ L T ++S F A + + KFI+
Sbjct: 22 ITAIASILHRVSGV-ITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFV--KFIMWGIL 78
Query: 58 FPVSYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAILTNLVLTLL 105
++YH GIRH++ D G +++ + G + + +VL+LL
Sbjct: 79 TALAYHVVVGIRHMMMDFGY---LEETFEAGKRSAKISFVITVVLSLL 123
>TIGR_CMR|SO_1927 [details] [associations]
symbol:SO_1927 "succinate dehydrogenase, cytochrome b556
subunit" species:211586 "Shewanella oneidensis MR-1" [GO:0000104
"succinate dehydrogenase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] [GO:0009055 "electron
carrier activity" evidence=ISS] [GO:0045282 "plasma membrane
succinate dehydrogenase complex" evidence=ISS] InterPro:IPR000701
InterPro:IPR014314 InterPro:IPR018495 Pfam:PF01127 PROSITE:PS01001
GO:GO:0009055 GO:GO:0006099 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014361 PIRSF:PIRSF000178 TIGRFAMs:TIGR02970
GO:GO:0008177 GO:GO:0045281 HOGENOM:HOG000160252 KO:K00241
OMA:IVKFIVW HSSP:P10446 RefSeq:NP_717534.1
ProteinModelPortal:Q8EFP3 SMR:Q8EFP3 GeneID:1169688
KEGG:son:SO_1927 PATRIC:23523487 ProtClustDB:CLSK906504
Uniprot:Q8EFP3
Length = 131
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 2 TSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFIL---AF 58
T+++SI HR +GV + +A+G+ L + + S SF +L ++ KFI+
Sbjct: 26 TAIVSILHRVSGVIML-FAVGILIWLLNSSLASAESFAGVQSLFDNFVV--KFIMWGILT 82
Query: 59 PVSYHTANGIRHLIWDTGR 77
+++H G+RHL+ DTGR
Sbjct: 83 ALTFHLFGGLRHLVMDTGR 101
>TIGR_CMR|NSE_0047 [details] [associations]
symbol:NSE_0047 "succinate dehydrogenase, cytochrome b556
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000104 "succinate dehydrogenase activity" evidence=ISS]
[GO:0006099 "tricarboxylic acid cycle" evidence=ISS] [GO:0009055
"electron carrier activity" evidence=ISS] [GO:0045282 "plasma
membrane succinate dehydrogenase complex" evidence=ISS]
InterPro:IPR000701 InterPro:IPR014314 Pfam:PF01127 GO:GO:0006099
EMBL:CP000237 GenomeReviews:CP000237_GR HOGENOM:HOG000160253
GO:GO:0000104 InterPro:IPR014361 PIRSF:PIRSF000178
TIGRFAMs:TIGR02970 GO:GO:0045281 KO:K00241 RefSeq:YP_505948.1
ProteinModelPortal:Q2GEZ8 STRING:Q2GEZ8 GeneID:3932111
KEGG:nse:NSE_0047 PATRIC:22680209 eggNOG:NOG240239 OMA:WALMHHM
ProtClustDB:CLSK2527723 BioCyc:NSEN222891:GHFU-84-MONOMER
Uniprot:Q2GEZ8
Length = 140
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 33/103 (32%), Positives = 51/103 (49%)
Query: 1 ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPIL---LAGKFILA 57
+ ++LSI+HR +G L Y G + SF+ + LS P LAG F+L
Sbjct: 31 LAAILSISHRLSGAFLFFYT-GFFSWYVFACFYMPSSFLHTV-LS-PFFSGYLAG-FLLC 86
Query: 58 FPV---SYHTANGIRHLIWDTGRALTIKKVYTTGYAMLGAAIL 97
F + YH +G+RHL WD L+ V + + ++ AA+L
Sbjct: 87 FFLFFFCYHLCSGVRHLFWDFCTGLSQASVKVSNFLVIIAALL 129
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.138 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 105 105 0.00091 102 3 11 22 0.37 30
29 0.39 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 467 (50 KB)
Total size of DFA: 90 KB (2068 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.77u 0.12s 9.89t Elapsed: 00:00:00
Total cpu time: 9.78u 0.13s 9.91t Elapsed: 00:00:00
Start: Thu Aug 15 14:00:10 2013 End: Thu Aug 15 14:00:10 2013