RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9433
         (105 letters)



>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC
           {Escherichia coli [TaxId: 562]}
          Length = 129

 Score = 62.6 bits (152), Expect = 1e-14
 Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 1   ITSVLSITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPV 60
           IT++ SI HR +GV        L  +  T+  +       +  + +  +    + +   +
Sbjct: 22  ITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTAL 81

Query: 61  SYHTANGIRHLIWDTGRAL-TIKKVYTTGYAMLGAAILTNLVLTLL 105
           +YH   GIRH++ D G    T +    +        ++ +L+  +L
Sbjct: 82  AYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVL 127


>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751
          {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 167

 Score = 24.6 bits (54), Expect = 2.0
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 3  SVLSITHRG-------TGVALTAYALGLAGVGLTTDINSVVSFVDALN 43
           VL + HR        T VALTA A G  G+   T+  SV   V  + 
Sbjct: 4  YVLRLGHRPERDKRISTHVALTARAFGAKGIYFDTEDKSVFESVRDVV 51


>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD
           {Escherichia coli [TaxId: 562]}
          Length = 113

 Score = 23.1 bits (50), Expect = 6.5
 Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 7   ITHRGTGVALTAYALGLAGVGLTTDINSVVSFVDALNLSAPILLAGKFILAFPVSYHTAN 66
           I  R T + LT Y + + G   T+   +   ++     +   +     + +  +  H   
Sbjct: 15  ILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFS--ILIHAWI 72

Query: 67  GIRHLIWDTGRALTIKKVYTTGYAMLGAAIL 97
           G+  ++ D  + L ++ +      +     +
Sbjct: 73  GMWQVLTDYVKPLALRLMLQLVIVVALVVYV 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 341,580
Number of extensions: 12945
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 5
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)