BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9434
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 58/88 (65%), Gaps = 7/88 (7%)
Query: 15 LVDFDELLSEPRFRSIEKIKTVGACYMAASGLDP---KHHSHLDELD--HVCALIDFSLA 69
+ DFD+LLS+P+F +EKIKT+G+ YMAA+GL + H+ E H+ +++F+ A
Sbjct: 49 IADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYA 108
Query: 70 IKQCLDQVNKHSFNHFFLRVG--SGPFL 95
+ LD +NKHSFN F LRVG GP +
Sbjct: 109 LVGKLDAINKHSFNDFKLRVGINHGPVI 136
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 58/88 (65%), Gaps = 7/88 (7%)
Query: 15 LVDFDELLSEPRFRSIEKIKTVGACYMAASGLDP---KHHSHLDELD--HVCALIDFSLA 69
+ DFD+LLS+P+F +EKIKT+G+ YMAA+GL + H+ E H+ +++F+ A
Sbjct: 50 IADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYA 109
Query: 70 IKQCLDQVNKHSFNHFFLRVG--SGPFL 95
+ LD +NKHSFN F LRVG GP +
Sbjct: 110 LVGKLDAINKHSFNDFKLRVGINHGPVI 137
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 58/88 (65%), Gaps = 7/88 (7%)
Query: 15 LVDFDELLSEPRFRSIEKIKTVGACYMAASGLDP---KHHSHLDELD--HVCALIDFSLA 69
+ DFD+LLS+P+F +EKIKT+G+ YMAA+GL + H+ E H+ +++F+ A
Sbjct: 46 IADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYA 105
Query: 70 IKQCLDQVNKHSFNHFFLRVG--SGPFL 95
+ LD +NKHSFN F LRVG GP +
Sbjct: 106 LVGKLDAINKHSFNDFKLRVGINHGPVI 133
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 18 FDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQV 77
FDEL+ + +EKI+ G YM SG+ P+ DH AL DF+L + Q+
Sbjct: 44 FDELVDQ---HGLEKIEVSGDSYMVVSGV-PRPRP-----DHTQALADFALDMTNVAAQL 94
Query: 78 NKHSFNHFFLRVG--SGPFL 95
N LRVG +GP +
Sbjct: 95 KDPRGNPVPLRVGLATGPVV 114
>pdb|2VFA|A Chain A, Crystal Structure Of A Chimera Of Plasmodium Falciparum
And Human Hypoxanthine-Guanine Phosphoribosyl
Transferases
pdb|2VFA|B Chain B, Crystal Structure Of A Chimera Of Plasmodium Falciparum
And Human Hypoxanthine-Guanine Phosphoribosyl
Transferases
Length = 229
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 1 MKANQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGA 38
+KA +NSD P VDF L S +S IK +G
Sbjct: 90 IKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGG 127
>pdb|1HMP|A Chain A, The Crystal Structure Of Human Hypoxanthine-Guanine
Phosphoribosyltransferase With Bound Gmp
pdb|1HMP|B Chain B, The Crystal Structure Of Human Hypoxanthine-Guanine
Phosphoribosyltransferase With Bound Gmp
pdb|1BZY|A Chain A, Human Hgprtase With Transition State Inhibitor
pdb|1BZY|B Chain B, Human Hgprtase With Transition State Inhibitor
pdb|1BZY|C Chain C, Human Hgprtase With Transition State Inhibitor
pdb|1BZY|D Chain D, Human Hgprtase With Transition State Inhibitor
pdb|1Z7G|A Chain A, Free Human Hgprt
pdb|1Z7G|B Chain B, Free Human Hgprt
pdb|1Z7G|C Chain C, Free Human Hgprt
pdb|1Z7G|D Chain D, Free Human Hgprt
pdb|3GEP|A Chain A, Human Hypoxanthine Guanine Phosphoribosyltranserfase In
Complex With (S)-9-(3-Hydroxy-2-Phosphonylmethoxypropyl)
Guanine
pdb|3GEP|B Chain B, Human Hypoxanthine Guanine Phosphoribosyltranserfase In
Complex With (S)-9-(3-Hydroxy-2-Phosphonylmethoxypropyl)
Guanine
pdb|3GGC|A Chain A, Human Hypoxanthine-guanine Phosphoribosyltransferase In
Complex With 9-(2-phosphonoethoxyethyl)hypoxanthine
pdb|3GGC|B Chain B, Human Hypoxanthine-guanine Phosphoribosyltransferase In
Complex With 9-(2-phosphonoethoxyethyl)hypoxanthine
pdb|3GGJ|A Chain A, Human Hypoxanthine-guanine Phosphoribosyltransferase In
Complex With 9-(2-phosphonoethoxyethyl)guanine
pdb|3GGJ|B Chain B, Human Hypoxanthine-guanine Phosphoribosyltransferase In
Complex With 9-(2-phosphonoethoxyethyl)guanine
Length = 217
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 1 MKANQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGA 38
+KA +NSD P VDF L S +S IK +G
Sbjct: 81 IKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGG 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,989,451
Number of Sequences: 62578
Number of extensions: 99936
Number of successful extensions: 275
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 10
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)