Query psy9434
Match_columns 100
No_of_seqs 132 out of 1007
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:15:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4171|consensus 100.0 4.4E-28 9.6E-33 194.3 10.4 88 3-99 461-551 (671)
2 KOG3619|consensus 99.9 2.9E-24 6.4E-29 176.8 8.2 96 4-99 674-775 (867)
3 KOG1023|consensus 99.8 7.4E-22 1.6E-26 155.3 4.8 89 3-99 315-407 (484)
4 KOG3619|consensus 99.8 1.2E-20 2.5E-25 155.7 9.8 88 3-99 131-220 (867)
5 KOG3618|consensus 99.8 4.9E-21 1.1E-25 156.0 5.6 86 5-99 361-448 (1318)
6 KOG3618|consensus 99.8 1.5E-20 3.1E-25 153.3 3.2 96 4-99 1105-1204(1318)
7 PF00211 Guanylate_cyc: Adenyl 99.8 5.7E-18 1.2E-22 116.4 10.0 87 4-99 28-116 (184)
8 cd07302 CHD cyclase homology d 99.6 7.7E-15 1.7E-19 98.5 11.4 87 4-99 21-111 (177)
9 smart00044 CYCc Adenylyl- / gu 99.6 5.7E-14 1.2E-18 97.6 11.5 88 3-99 55-146 (194)
10 COG2114 CyaA Adenylate cyclase 99.5 5.7E-13 1.2E-17 95.8 10.8 83 4-99 66-151 (227)
11 cd07556 Nucleotidyl_cyc_III Cl 97.2 0.015 3.2E-07 36.7 10.4 76 8-97 25-102 (133)
12 COG2429 Archaeal GTP cyclohydr 81.8 11 0.00024 27.9 7.2 35 8-45 156-190 (250)
13 PF01025 GrpE: GrpE; InterPro 79.7 3 6.4E-05 28.2 3.5 33 5-40 88-120 (165)
14 PF07342 DUF1474: Protein of u 78.1 0.71 1.5E-05 29.6 0.0 29 4-34 61-89 (100)
15 PRK02240 GTP cyclohydrolase II 69.9 33 0.00072 25.6 7.1 34 12-48 32-66 (254)
16 PF06085 Rz1: Lipoprotein Rz1 55.3 4.2 9.2E-05 21.9 0.1 16 1-16 20-35 (40)
17 cd00446 GrpE GrpE is the adeni 51.2 15 0.00032 24.3 2.3 32 6-40 63-94 (137)
18 PRK14147 heat shock protein Gr 50.9 14 0.00031 25.7 2.3 31 7-40 95-125 (172)
19 PRK14144 heat shock protein Gr 49.3 16 0.00036 26.2 2.4 32 6-40 122-153 (199)
20 cd03756 proteasome_alpha_arche 46.0 1E+02 0.0022 21.5 6.4 21 28-48 56-77 (211)
21 cd03755 proteasome_alpha_type_ 45.1 1E+02 0.0022 21.4 6.0 21 28-48 55-76 (207)
22 PRK14151 heat shock protein Gr 44.4 21 0.00045 25.1 2.2 32 6-40 99-130 (176)
23 PF05165 GGDN: GGDN family; I 42.5 1.4E+02 0.0031 22.2 7.8 31 11-44 155-185 (246)
24 KOG0180|consensus 42.3 28 0.00062 24.8 2.7 63 29-98 38-112 (204)
25 PRK10325 heat shock protein Gr 42.0 18 0.0004 25.7 1.7 31 7-40 119-149 (197)
26 PRK14145 heat shock protein Gr 41.3 19 0.00042 25.7 1.7 31 7-40 121-151 (196)
27 PRK14139 heat shock protein Gr 41.3 23 0.00049 25.1 2.1 31 7-40 109-139 (185)
28 PRK14140 heat shock protein Gr 40.3 20 0.00043 25.5 1.7 29 8-39 117-145 (191)
29 PRK14162 heat shock protein Gr 39.1 28 0.0006 24.9 2.3 32 6-40 117-148 (194)
30 PRK14157 heat shock protein Gr 38.9 21 0.00046 26.2 1.7 27 11-40 153-179 (227)
31 PRK14163 heat shock protein Gr 38.2 23 0.0005 25.7 1.7 31 7-40 112-142 (214)
32 PRK14164 heat shock protein Gr 38.2 23 0.0005 25.8 1.7 27 11-40 147-173 (218)
33 PRK14153 heat shock protein Gr 37.9 30 0.00065 24.7 2.3 31 7-40 112-142 (194)
34 PRK14143 heat shock protein Gr 36.5 33 0.00071 25.3 2.4 31 7-40 147-177 (238)
35 PRK14142 heat shock protein Gr 35.5 28 0.00062 25.5 1.9 27 11-40 110-136 (223)
36 PRK14141 heat shock protein Gr 35.0 36 0.00079 24.6 2.3 31 7-40 116-146 (209)
37 PRK14150 heat shock protein Gr 34.8 35 0.00075 24.2 2.2 31 7-40 118-148 (193)
38 PRK14146 heat shock protein Gr 34.4 36 0.00078 24.7 2.2 31 7-40 133-163 (215)
39 KOG3003|consensus 34.0 36 0.00077 25.2 2.2 30 8-40 157-186 (236)
40 COG0056 AtpA F0F1-type ATP syn 33.9 56 0.0012 26.7 3.4 43 4-49 5-47 (504)
41 PRK14538 putative bifunctional 31.7 3.5E+02 0.0077 23.6 8.2 68 10-91 230-297 (838)
42 cd06246 M14_CPB2 Peptidase M14 31.3 48 0.001 24.9 2.6 28 11-40 8-35 (300)
43 TIGR00190 thiC thiamine biosyn 31.1 27 0.00058 27.9 1.2 28 12-41 199-226 (423)
44 PF10664 NdhM: Cyanobacterial 31.0 40 0.00086 21.9 1.8 16 9-24 42-57 (108)
45 PF08987 DUF1892: Protein of u 30.4 65 0.0014 21.2 2.7 19 6-24 49-67 (115)
46 PF01964 ThiC: ThiC family; I 29.9 33 0.00072 27.4 1.5 27 12-40 198-224 (420)
47 PRK03609 umuC DNA polymerase V 29.6 1.8E+02 0.0039 22.6 5.6 61 8-91 78-139 (422)
48 PF14485 DUF4431: Domain of un 29.5 81 0.0018 17.3 2.7 29 12-47 8-36 (48)
49 PRK14158 heat shock protein Gr 28.2 59 0.0013 23.2 2.4 32 6-40 117-149 (194)
50 PF06198 DUF999: Protein of un 27.7 66 0.0014 21.3 2.4 19 6-24 54-72 (143)
51 PRK13352 thiamine biosynthesis 27.5 34 0.00074 27.4 1.2 28 12-41 202-229 (431)
52 COG1259 Uncharacterized conser 27.1 73 0.0016 22.0 2.7 36 8-48 61-96 (151)
53 PRK14148 heat shock protein Gr 26.5 47 0.001 23.7 1.7 31 7-40 119-149 (195)
54 PRK10635 bacterioferritin; Pro 26.2 56 0.0012 22.3 2.0 16 1-16 1-16 (158)
55 PRK02406 DNA polymerase IV; Va 25.3 2.9E+02 0.0064 20.6 6.0 62 8-91 72-134 (343)
56 cd06247 M14_CPO Peptidase M14 25.1 66 0.0014 24.3 2.4 28 11-40 7-34 (298)
57 PF01195 Pept_tRNA_hydro: Pept 24.7 81 0.0017 22.0 2.6 11 82-92 123-133 (184)
58 KOG3099|consensus 24.3 67 0.0015 24.8 2.2 17 83-99 164-183 (340)
59 PRK14155 heat shock protein Gr 24.0 69 0.0015 23.1 2.2 31 7-40 95-126 (208)
60 PF09061 Stirrup: Stirrup; In 23.9 1.7E+02 0.0038 17.5 4.0 29 14-46 8-36 (79)
61 cd03872 M14_CPA6 Carboxypeptid 23.9 75 0.0016 24.0 2.5 28 11-40 5-32 (300)
62 COG0576 GrpE Molecular chapero 23.8 79 0.0017 22.4 2.5 31 7-40 116-146 (193)
63 PF10379 nec1: Virulence prote 23.5 40 0.00088 23.1 0.9 23 31-54 3-25 (184)
64 PRK03858 DNA polymerase IV; Va 23.5 2.5E+02 0.0055 21.4 5.4 62 8-91 77-139 (396)
65 COG3887 Predicted signaling pr 23.2 4.2E+02 0.0091 22.6 6.7 70 8-91 197-267 (655)
66 cd03468 PolY_like DNA Polymera 23.1 2.7E+02 0.0059 20.5 5.3 35 8-48 75-109 (335)
67 KOG0544|consensus 22.4 70 0.0015 20.7 1.8 17 82-98 44-60 (108)
68 COG3427 Carbon monoxide dehydr 22.1 1.2E+02 0.0026 20.8 2.9 39 4-48 13-51 (146)
69 COG2193 Bfr Bacterioferritin ( 22.0 72 0.0016 22.1 1.9 16 1-16 1-16 (157)
70 TIGR00447 pth peptidyl-tRNA hy 21.7 1.1E+02 0.0025 21.5 2.9 10 83-92 126-135 (188)
71 cd00462 PTH Peptidyl-tRNA hydr 21.6 97 0.0021 21.5 2.5 10 83-92 123-132 (171)
72 KOG0496|consensus 20.9 4.9E+02 0.011 22.2 6.7 54 15-72 90-156 (649)
73 KOG0185|consensus 20.6 1.4E+02 0.003 22.3 3.2 20 26-45 68-87 (256)
74 COG1534 Predicted RNA-binding 20.5 1.4E+02 0.003 19.1 2.8 24 13-39 31-54 (97)
75 cd03870 M14_CPA Peptidase M14 20.4 1E+02 0.0022 23.3 2.5 29 10-40 8-36 (301)
76 PRK14161 heat shock protein Gr 20.3 1.1E+02 0.0023 21.6 2.5 31 7-40 100-131 (178)
77 cd02406 CRS2 Chloroplast RNA s 20.2 1.3E+02 0.0029 21.3 3.0 10 83-92 127-136 (191)
No 1
>KOG4171|consensus
Probab=99.95 E-value=4.4e-28 Score=194.26 Aligned_cols=88 Identities=22% Similarity=0.348 Sum_probs=82.9
Q ss_pred ccchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcC-
Q psy9434 3 ANQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHS- 81 (100)
Q Consensus 3 ~~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~- 81 (100)
.|.+++++||++|++||++++. |++|||+||||+||++||+|. ....||+.++++||.|+...+++-...
T Consensus 461 tp~~vV~~LN~lyt~fD~~i~~---~~VYKVETIGDaYm~vsG~P~------~~~~HAe~i~~~AL~Mm~~ak~v~~p~~ 531 (671)
T KOG4171|consen 461 TPMQVVNMLNELYTRFDRIIDT---HDVYKVETIGDAYMVVSGLPD------ASDYHAEHIADLALGMMEEAKEVVSPVT 531 (671)
T ss_pred CcHHHHHHHHHHHHHHHHhhcc---cCeEEEeeccchheeecCCCC------CChhHHHHHHHHHHHHHHHhhhhcCcCC
Confidence 5778999999999999999998 999999999999999999999 788999999999999999999877654
Q ss_pred CCceeEEEee--eceEEEEe
Q psy9434 82 FNHFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 82 ~~~~~iRIGi--GpvvaGVV 99 (100)
..+++||||| ||||||||
T Consensus 532 ~~pi~iRiGIHsG~VvAGVV 551 (671)
T KOG4171|consen 532 GEPIQIRIGIHSGPVVAGVV 551 (671)
T ss_pred CCceEEEEEeccCCeeeeee
Confidence 7899999999 99999998
No 2
>KOG3619|consensus
Probab=99.90 E-value=2.9e-24 Score=176.82 Aligned_cols=96 Identities=44% Similarity=0.754 Sum_probs=86.9
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCC----CchHHHHHHHHhHHHHHHHHHHhhh
Q psy9434 4 NQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHL----DELDHVCALIDFSLAIKQCLDQVNK 79 (100)
Q Consensus 4 ~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~----~~~~h~~~~~~~al~m~~~~~~~~~ 79 (100)
.-+.+++||++++.||+++++++|.+++||||||.+||||+||........ ....|+..+++||++|...++.+|.
T Consensus 674 GlECLRlLNEIIaDFDeLL~~pkF~~IEKIKTIGSTYMAAsGL~~~~~~~~~~~~~~~~h~~~l~eFAlal~~~L~~IN~ 753 (867)
T KOG3619|consen 674 GLECLRLLNEIIADFDELLSKPKFSGVEKIKTIGSTYMAASGLNPTSAQENDQSLRQWSHLGALVEFALALMHKLDEINR 753 (867)
T ss_pred cchHHHHHHHHHhhHHHhcCccccccceeEEEecchhhhhhCCChhhhhccCcchhHHhhHHHHHHHHHHHHHHHHhhhH
Confidence 467799999999999999999999999999999999999999977552211 2247999999999999999999999
Q ss_pred cCCCceeEEEee--eceEEEEe
Q psy9434 80 HSFNHFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 80 ~~~~~~~iRIGi--GpvvaGVV 99 (100)
++.+.+++|||| |||+||||
T Consensus 754 ~SfNnF~LrIGin~GpvvAGVI 775 (867)
T KOG3619|consen 754 HSFNNFELRIGINHGPVVAGVI 775 (867)
T ss_pred HhhccceeeeceeccceeeeEe
Confidence 999999999999 99999998
No 3
>KOG1023|consensus
Probab=99.85 E-value=7.4e-22 Score=155.35 Aligned_cols=89 Identities=21% Similarity=0.402 Sum_probs=81.4
Q ss_pred ccchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcCC
Q psy9434 3 ANQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHSF 82 (100)
Q Consensus 3 ~~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~~ 82 (100)
.|.+++.+||++|+.||.++++ |++|||+||||+||++||+|.. ....|+..++.+|+++++.++.+...+.
T Consensus 315 ~P~~vv~~lNdlyt~Fd~ii~~---~d~yKVetiGDaYmvvSglp~~-----n~~~H~~eia~msl~~~~~~~~f~i~H~ 386 (484)
T KOG1023|consen 315 TPIQVVTLLNDLYTTFDRIIDK---HDVYKVETIGDAYMVVSGLPIR-----NGYRHAREIASMALGLRSFLESFSLPHR 386 (484)
T ss_pred CCceeeeeccchHHhhhhcccc---cCCeeEeccCcceeecccCcee-----cHhHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 4566899999999999999999 9999999999999999999995 4556999999999999999999997554
Q ss_pred C--ceeEEEee--eceEEEEe
Q psy9434 83 N--HFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 83 ~--~~~iRIGi--GpvvaGVV 99 (100)
+ ++++|||+ |||+||||
T Consensus 387 P~~~l~iRig~~sg~~~agVv 407 (484)
T KOG1023|consen 387 PWEKLRLRIGFHSGPVVAGVV 407 (484)
T ss_pred CchhhheeeccccCCceeccc
Confidence 3 89999999 99999998
No 4
>KOG3619|consensus
Probab=99.84 E-value=1.2e-20 Score=155.69 Aligned_cols=88 Identities=26% Similarity=0.423 Sum_probs=84.9
Q ss_pred ccchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcCC
Q psy9434 3 ANQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHSF 82 (100)
Q Consensus 3 ~~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~~ 82 (100)
..|+.+++||++|.+||.++.+ +++.+||..||||.|++|+|. +.+|||..+++|+++|+++++.++...+
T Consensus 131 saqelv~~LneLf~rfd~lA~~---~~clRiKiLGdcyyCvsglp~------~~~dHA~~~v~mgl~Mi~aI~~vr~at~ 201 (867)
T KOG3619|consen 131 SAQELVKVLNELFARFDRLAAE---NHCLRIKILGDCYYCVSGLPE------ARPDHAVCCVEMGLDMIKAIKQVREATG 201 (867)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh---cceEeeeeecceeEEecCCCC------CChhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3588999999999999999999 999999999999999999998 8899999999999999999999999999
Q ss_pred CceeEEEee--eceEEEEe
Q psy9434 83 NHFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 83 ~~~~iRIGi--GpvvaGVV 99 (100)
.+++||||| |+|.|||+
T Consensus 202 ~dvnmrvGihsG~Vl~Gvl 220 (867)
T KOG3619|consen 202 VDVNMRVGIHSGSVLCGVL 220 (867)
T ss_pred CCCceEEEEecCceeeccc
Confidence 999999999 99999996
No 5
>KOG3618|consensus
Probab=99.83 E-value=4.9e-21 Score=156.01 Aligned_cols=86 Identities=24% Similarity=0.383 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcCCCc
Q psy9434 5 QKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHSFNH 84 (100)
Q Consensus 5 ~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~~~~ 84 (100)
.+.+.+||++|.+||.+|.. .+++||.|+||||.|++|.|+ |..|||.++++|+|+|+++++.|..+....
T Consensus 361 ~~LV~lLNDLFgRFD~LC~l---~gcEKISTLGDCYYCVaGCPE------PraDHA~ccvEMGLgMI~AirqFd~~r~e~ 431 (1318)
T KOG3618|consen 361 HALVGLLNDLFGRFDRLCEL---TGCEKISTLGDCYYCVAGCPE------PRADHAYCCVEMGLGMIKAIRQFDQERKEM 431 (1318)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCcchhccccceeeeecCCCC------CcccceeeehhhcchHHHHHHHHHHHhhcc
Confidence 45789999999999999999 999999999999999999999 899999999999999999999999999999
Q ss_pred eeEEEee--eceEEEEe
Q psy9434 85 FFLRVGS--GPFLIFQV 99 (100)
Q Consensus 85 ~~iRIGi--GpvvaGVV 99 (100)
++||+|+ |.|.+|+|
T Consensus 432 VnMRVGvHTGtVlCGiv 448 (1318)
T KOG3618|consen 432 VNMRVGVHTGTVLCGIV 448 (1318)
T ss_pred cceEEEEecceEEeeee
Confidence 9999999 99999987
No 6
>KOG3618|consensus
Probab=99.80 E-value=1.5e-20 Score=153.26 Aligned_cols=96 Identities=41% Similarity=0.618 Sum_probs=86.1
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCC-CCCCchHHHHHHHHhHHHHHHHHHHhhhcCC
Q psy9434 4 NQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHH-SHLDELDHVCALIDFSLAIKQCLDQVNKHSF 82 (100)
Q Consensus 4 ~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~-~~~~~~~h~~~~~~~al~m~~~~~~~~~~~~ 82 (100)
.++.++.||+++..||+++++++|..++||||||.+|||+|||++... +-..+.+|...+.+||++|++.++.||....
T Consensus 1105 GkEflRVLNElIGDFDELLsrPdf~~iEKIKTIG~tyMAASGLnp~~~~~~~hp~EHl~~l~eFa~amq~Vvd~FN~dlL 1184 (1318)
T KOG3618|consen 1105 GKEFLRVLNELIGDFDELLSRPDFSSIEKIKTIGATYMAASGLNPAQAQDGSHPQEHLQILFEFAKAMQRVVDDFNNDLL 1184 (1318)
T ss_pred hHHHHHHHHHHhccHHHHhccccchhhHHHhhhhHHHHHhcCCChHHccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 467789999999999999999999999999999999999999987542 2224568999999999999999999998876
Q ss_pred C-ceeEEEee--eceEEEEe
Q psy9434 83 N-HFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 83 ~-~~~iRIGi--GpvvaGVV 99 (100)
+ .+.+|+|+ |||.||||
T Consensus 1185 ~Fnf~lrvG~NiGpvTAGVI 1204 (1318)
T KOG3618|consen 1185 WFNFKLRVGFNIGPVTAGVI 1204 (1318)
T ss_pred heeeeEEeeccccCcccccc
Confidence 5 79999999 99999998
No 7
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=99.76 E-value=5.7e-18 Score=116.39 Aligned_cols=87 Identities=25% Similarity=0.364 Sum_probs=81.0
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcCCC
Q psy9434 4 NQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHSFN 83 (100)
Q Consensus 4 ~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~~~ 83 (100)
++++.++||++|+.+++++.+ +++++++++||+|||++|+|. +..+|+.+++++|++|++.+++++.....
T Consensus 28 ~~~~~~~l~~~~~~~~~~v~~---~~g~~~~~~Gd~~~~~f~~~~------~~~~~~~~a~~~al~~~~~~~~~~~~~~~ 98 (184)
T PF00211_consen 28 PEELVRLLNDFFSSLDRIVKQ---HGGEIIKFIGDGVMAVFGLPE------PDEDAAERAVQFALALLEALERLNKESGP 98 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---TTEEEEEEETTEEEEEESSSS------CHCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhHHHHHHHHHHHhhhcccc---ccccccccccceeEEEecccc------ccccccccccccccchhhcccccccccce
Confidence 567899999999999999999 999999999999999999996 77889999999999999999999987778
Q ss_pred ceeEEEee--eceEEEEe
Q psy9434 84 HFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 84 ~~~iRIGi--GpvvaGVV 99 (100)
++++|||| ||+++|++
T Consensus 99 ~~~~rIGI~~G~v~~g~~ 116 (184)
T PF00211_consen 99 PLSVRIGIHTGPVVVGVV 116 (184)
T ss_dssp S-EEEEEEEEEEEEEEEE
T ss_pred eeeeeccccccccccccc
Confidence 99999999 99999986
No 8
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=99.63 E-value=7.7e-15 Score=98.45 Aligned_cols=87 Identities=24% Similarity=0.332 Sum_probs=80.9
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhc--C
Q psy9434 4 NQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKH--S 81 (100)
Q Consensus 4 ~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~--~ 81 (100)
++.++++||.+++.+++++.+ ++++++++.||+||++++.|. ...+++.+++++|++|++.+.+++.. .
T Consensus 21 ~~~~~~~l~~~~~~~~~~~~~---~~g~~~~~~gd~~~~~f~~~~------~~~~~~~~A~~~a~~i~~~~~~~~~~~~~ 91 (177)
T cd07302 21 PEELVELLNEYFSAFDEIIER---HGGTVDKTIGDAVMAVFGLPG------AHEDHAERAVRAALEMQEALAELNAEREG 91 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---cCCEEEEEeCceEEEEeCCCC------CchhHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 567889999999999999999 999999999999999999988 67889999999999999999999876 5
Q ss_pred CCceeEEEee--eceEEEEe
Q psy9434 82 FNHFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 82 ~~~~~iRIGi--GpvvaGVV 99 (100)
...+++|||| ||+++|.+
T Consensus 92 ~~~~~~riGi~~G~~~~g~~ 111 (177)
T cd07302 92 GPPLRLRIGIHTGPVVAGVV 111 (177)
T ss_pred CCCeEEEEEEecceEEEEec
Confidence 6789999999 99999975
No 9
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=99.57 E-value=5.7e-14 Score=97.57 Aligned_cols=88 Identities=26% Similarity=0.385 Sum_probs=78.9
Q ss_pred ccchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCc-hHHHHHHHHhHHHHHHHHHHhhhcC
Q psy9434 3 ANQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDE-LDHVCALIDFSLAIKQCLDQVNKHS 81 (100)
Q Consensus 3 ~~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~-~~h~~~~~~~al~m~~~~~~~~~~~ 81 (100)
.+.+.+++||++|..+++++.+ |+++.++++||++|+++|.|. .. .+|+.+++.+|+++++.+.+++...
T Consensus 55 ~~~~~~~~l~~~~~~~~~~i~~---~gg~v~~~~Gd~~l~~F~~~~------~~~~~~a~~a~~~al~l~~~~~~~~~~~ 125 (194)
T smart00044 55 TPEQVVTLLNDLYSRFDRIIDR---HGGYKVKTIGDAYMVVSGLPT------EALVDHAELAADEALDMVESLKTVLSQH 125 (194)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh---cCeEEEEEeCCEEEEEECCCC------CcchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567789999999999999999 999999999999999999988 34 5899999999999999999887643
Q ss_pred -CCceeEEEee--eceEEEEe
Q psy9434 82 -FNHFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 82 -~~~~~iRIGi--GpvvaGVV 99 (100)
..++++|||| |+|++|.+
T Consensus 126 ~~~~l~~riGih~G~v~~~~~ 146 (194)
T smart00044 126 RGNGLRVRIGIHTGPVVAGVV 146 (194)
T ss_pred cCCCeeEEEEEeccceEEEec
Confidence 5689999999 99999975
No 10
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=99.48 E-value=5.7e-13 Score=95.82 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=67.6
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHH-hHHHHHHHHHHhhhcCC
Q psy9434 4 NQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALID-FSLAIKQCLDQVNKHSF 82 (100)
Q Consensus 4 ~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~-~al~m~~~~~~~~~~~~ 82 (100)
+..+.++||.+|..++..+.+ |++..+|+|||++|+++|.|. +.. ++.+++. .+++|.+..++.+.+.
T Consensus 66 ~~~~~~ll~~~~~~~~~~v~~---~gG~v~k~iGD~~la~F~~p~------~~~-~A~~~a~~~~~~~~~~~~~~~~~~- 134 (227)
T COG2114 66 DEALVELLNLYFDAVAEVVAR---HGGRVVKFIGDGFLAVFGRPS------PLE-DAVACALDLQLALRNPLARLRRES- 134 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---cCCEEEEEecceEEEEeCCCC------CcH-HHHHHHHHHHHHHHHHHhhccCcC-
Confidence 345789999999999999999 999999999999999999998 444 4444443 5667766666655443
Q ss_pred CceeEEEee--eceEEEEe
Q psy9434 83 NHFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 83 ~~~~iRIGi--GpvvaGVV 99 (100)
+++|||| |+|++|.+
T Consensus 135 --l~~riGi~~G~vv~~~~ 151 (227)
T COG2114 135 --LRVRIGIHTGEVVVGNT 151 (227)
T ss_pred --eeEEEEEEeecEEEEee
Confidence 9999999 99999976
No 11
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=97.17 E-value=0.015 Score=36.66 Aligned_cols=76 Identities=29% Similarity=0.479 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcCCCceeE
Q psy9434 8 SDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHSFNHFFL 87 (100)
Q Consensus 8 v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~~~~~~i 87 (100)
-++|..+.+.+.+.+.. ++.....+-||.|+++..- ....++.+++..+.+.+..........+.+
T Consensus 25 ~~~l~~~~~~l~~~~~~---~~~~~~r~~~d~f~~l~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 90 (133)
T cd07556 25 DELLNELAGRFDSLIRR---SGDLKIKTIGDEFMVVSGL-----------DHPAAAVAFAEDMREAVSALNQSEGNPVRV 90 (133)
T ss_pred HHHHHHHHHHHHHHHHH---cCcEEEEeecceEEEEECc-----------hHHHHHHHHHHHHHHHHHHHHhccCCceEE
Confidence 36778888888888876 5667778899999999732 123556777888888777665445557889
Q ss_pred EEee--eceEEE
Q psy9434 88 RVGS--GPFLIF 97 (100)
Q Consensus 88 RIGi--GpvvaG 97 (100)
+||+ |++..+
T Consensus 91 ~ig~~~g~~~~~ 102 (133)
T cd07556 91 RIGIHTGPVVVG 102 (133)
T ss_pred EEEEecccEEEE
Confidence 9999 988766
No 12
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=81.82 E-value=11 Score=27.88 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeC
Q psy9434 8 SDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASG 45 (100)
Q Consensus 8 v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~G 45 (100)
....+..+..+++-+.+ ++.----.=||-||+++.
T Consensus 156 ~~~I~~~~~~L~~~l~k---~gal~fflGGDN~ma~~p 190 (250)
T COG2429 156 YTEIQRVYATLMRFLEK---IGALLFFLGGDNIMAVCP 190 (250)
T ss_pred HHHHHHHHHHHHHHHHh---cCcEEEEecCcceEEECC
Confidence 34678888999999988 777766666899999983
No 13
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=79.72 E-value=3 Score=28.19 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 5 QKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 5 ~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
+....-++.++..|..++.+ +|+++|.+.|+.|
T Consensus 88 ~~~~~g~~~~~~~l~~~L~~---~Gv~~i~~~G~~F 120 (165)
T PF01025_consen 88 ESLLEGLEMILKQLEDILEK---NGVEEIEPVGEPF 120 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---TTEEEE--TSSB-
T ss_pred HHHHHHHHHHHHHHHHHHHH---CCCEecCCCCCCC
Confidence 45567889999999999999 9999999999876
No 14
>PF07342 DUF1474: Protein of unknown function (DUF1474); InterPro: IPR009942 This entry is represented by Bacteriophage PT1028, Orf16. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 100 residues in length. Members of this family seem to be found exclusively in Staphylococcus aureus. The function of this family is unknown.
Probab=78.07 E-value=0.71 Score=29.64 Aligned_cols=29 Identities=38% Similarity=0.618 Sum_probs=24.5
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcCCeEEEe
Q psy9434 4 NQKNSDTVEPRLVDFDELLSEPRFRSIEKIK 34 (100)
Q Consensus 4 ~~~~v~lLn~lf~~FD~l~~~~~~~~v~Kik 34 (100)
+.+++++|.-+..+||.++.+ |+.++|-.
T Consensus 61 n~Q~~dL~~~Ylkefd~li~k--F~eiEKas 89 (100)
T PF07342_consen 61 NTQTIDLMHMYLKEFDELIEK--FKEIEKAS 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence 345899999999999999987 88888843
No 15
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=69.86 E-value=33 Score=25.60 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEee-CCCC
Q psy9434 12 EPRLVDFDELLSEPRFRSIEKIKTVGACYMAAS-GLDP 48 (100)
Q Consensus 12 n~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~-Gl~~ 48 (100)
.++|..+-+.+.+ ++.+-.-+=||-|||++ |+..
T Consensus 32 srLya~L~~~~~~---~ggl~Ff~RgDN~iavtNGI~~ 66 (254)
T PRK02240 32 SRLYADLAQQFGA---RDGYVFFTRFDNMIAVTNGIDL 66 (254)
T ss_pred HHHHHHHHHHHHh---CCCEEEeccCceEEEEcCCCCH
Confidence 4677888888888 89998889999999996 6654
No 16
>PF06085 Rz1: Lipoprotein Rz1 precursor; InterPro: IPR010346 This family consists of several bacteria and phage lipoprotein Rz1 precursors. Rz1 is a proline-rich lipoprotein from bacteriophage lambda, which is known to have fusogenic properties. Rz1-induced liposome fusion is thought to be mediated primarily by the generation of local perturbation in the bilayer lipid membrane and to a lesser extent by electrostatic forces [].; GO: 0019064 viral envelope fusion with host membrane, 0019867 outer membrane
Probab=55.32 E-value=4.2 Score=21.87 Aligned_cols=16 Identities=6% Similarity=0.092 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHHH
Q psy9434 1 MKANQKNSDTVEPRLV 16 (100)
Q Consensus 1 ~~~~~~~v~lLn~lf~ 16 (100)
|+.++....+||++|+
T Consensus 20 M~p~~n~~~~Ld~iis 35 (40)
T PF06085_consen 20 MQPPPNWQQLLDGIIS 35 (40)
T ss_pred ccCChhhHHHhhceec
Confidence 6777888899999886
No 17
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=51.15 E-value=15 Score=24.28 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 6 KNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 6 ~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
...+=++.+++.|..+..+ +++++|...|+.|
T Consensus 63 ~~~~g~~~i~~~l~~~L~~---~Gv~~i~~~g~~F 94 (137)
T cd00446 63 NLVEGVEMTLKQLLDVLEK---HGVEKIEPEGEPF 94 (137)
T ss_pred HHHHHHHHHHHHHHHHHHH---CCCEEECCCCCCC
Confidence 4567788999999999999 9999999888643
No 18
>PRK14147 heat shock protein GrpE; Provisional
Probab=50.93 E-value=14 Score=25.74 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 7 NSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
+..=++.++..|..++.+ +|+.+|.++|+.|
T Consensus 95 l~~Gv~mi~k~l~~~L~~---~Gv~~i~~~G~~F 125 (172)
T PRK14147 95 LRDGLELTYKQLLKVAAD---NGLTLLDPVGQPF 125 (172)
T ss_pred HHHHHHHHHHHHHHHHHH---CCCEEeCCCCCCC
Confidence 445677889999999999 9999999998754
No 19
>PRK14144 heat shock protein GrpE; Provisional
Probab=49.34 E-value=16 Score=26.18 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 6 KNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 6 ~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
.++.=+..++..|..++.+ +++.+|..+|+.|
T Consensus 122 ~i~~Gv~mi~k~l~~~L~k---~GV~~I~~~G~~F 153 (199)
T PRK14144 122 SMHEGLELTMKLFLDALQK---FDVEQIDPLGQTF 153 (199)
T ss_pred HHHHHHHHHHHHHHHHHHH---CCCEEeCCCCCCC
Confidence 4567788899999999999 9999999998754
No 20
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=45.99 E-value=1e+02 Score=21.51 Aligned_cols=21 Identities=43% Similarity=0.427 Sum_probs=16.4
Q ss_pred CCeEEEeeeCC-EEEEeeCCCC
Q psy9434 28 RSIEKIKTVGA-CYMAASGLDP 48 (100)
Q Consensus 28 ~~v~KiktiGd-~yma~~Gl~~ 48 (100)
....||..|+| .+|+.+|++.
T Consensus 56 ~~~~KI~~I~~~i~~~~sG~~~ 77 (211)
T cd03756 56 ESIEKIYKIDDHVGAATSGLVA 77 (211)
T ss_pred CccceEEEEcCCEEEEEecCHH
Confidence 45678888877 6788899876
No 21
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=45.14 E-value=1e+02 Score=21.41 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=16.7
Q ss_pred CCeEEEeeeCC-EEEEeeCCCC
Q psy9434 28 RSIEKIKTVGA-CYMAASGLDP 48 (100)
Q Consensus 28 ~~v~KiktiGd-~yma~~Gl~~ 48 (100)
....||..|+| .+|+.+|+..
T Consensus 55 ~~~~KI~~I~~~i~~~~sG~~~ 76 (207)
T cd03755 55 RTVRKICMLDDHVCLAFAGLTA 76 (207)
T ss_pred CccCcEEEECCCEEEEEecchh
Confidence 35778889999 4688899976
No 22
>PRK14151 heat shock protein GrpE; Provisional
Probab=44.42 E-value=21 Score=25.07 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 6 KNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 6 ~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
.+++=+..++..|..+..+ +|+.+|.+.|+.|
T Consensus 99 ~~~~Gv~mi~k~l~~~L~k---~Gv~~i~~~G~~F 130 (176)
T PRK14151 99 PMREGVELTLKMFQDTLKR---YQLEAVDPHGEPF 130 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH---CCCEEeCCCCCCC
Confidence 3455677788999999999 9999999988743
No 23
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=42.53 E-value=1.4e+02 Score=22.20 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEee
Q psy9434 11 VEPRLVDFDELLSEPRFRSIEKIKTVGACYMAAS 44 (100)
Q Consensus 11 Ln~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~ 44 (100)
.++++...-+.+.+ ++.----.=||-+|+++
T Consensus 155 I~~l~~~l~~~~~~---~G~L~fylGGDNi~~v~ 185 (246)
T PF05165_consen 155 IEDLYAKLMKYLEK---YGSLAFYLGGDNIMAVC 185 (246)
T ss_dssp HHHHHHHHHHHHHT---TT---EEEETTEEEEE-
T ss_pred HHHHHHHHHHHHHh---cCCEEEEecCceEEEEC
Confidence 34445555555556 66665666799999988
No 24
>KOG0180|consensus
Probab=42.34 E-value=28 Score=24.81 Aligned_cols=63 Identities=16% Similarity=0.287 Sum_probs=35.7
Q ss_pred CeEEEeeeCCE-EEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcCCC--------ceeEEEee---eceEE
Q psy9434 29 SIEKIKTVGAC-YMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHSFN--------HFFLRVGS---GPFLI 96 (100)
Q Consensus 29 ~v~KiktiGd~-yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~~~--------~~~iRIGi---Gpvva 96 (100)
+-.||.-|||- |+..+|+.. +.+-..+.++|-..+.+.-++-+.+... --+-|.|= +||||
T Consensus 38 df~ki~~igdr~y~GL~glat-------Dvqtl~~~~~fr~nLy~lre~R~i~P~~~s~mvS~~lYekRfgpYf~~PvVA 110 (204)
T KOG0180|consen 38 DFQKIFKIGDRLYLGLTGLAT-------DVQTLLERLRFRKNLYELREEREIKPETFSSMVSSLLYEKRFGPYFTEPVVA 110 (204)
T ss_pred cchhheecCCeeEEeccccch-------hHHHHHHHHHHHHhHHHhhhhcccCcHHHHHHHHHHHHHhhcCCcccceeEe
Confidence 44567778965 888888855 3445555566655554432222211110 23456676 99999
Q ss_pred EE
Q psy9434 97 FQ 98 (100)
Q Consensus 97 GV 98 (100)
|+
T Consensus 111 Gl 112 (204)
T KOG0180|consen 111 GL 112 (204)
T ss_pred cc
Confidence 86
No 25
>PRK10325 heat shock protein GrpE; Provisional
Probab=41.99 E-value=18 Score=25.72 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 7 NSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
++.=+..++..|..++.+ +|+++|..+|+.|
T Consensus 119 l~~Gv~m~~~~l~~~L~~---~Gv~~i~~~G~~F 149 (197)
T PRK10325 119 MVEGIELTLKSMLDVVRK---FGVEVIAETNVPL 149 (197)
T ss_pred HHHHHHHHHHHHHHHHHH---CcCeeeCCCCCCC
Confidence 445566788889999999 9999999988754
No 26
>PRK14145 heat shock protein GrpE; Provisional
Probab=41.28 E-value=19 Score=25.74 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 7 NSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
+..=++.++..|..++.+ +|+.+|..+|+.|
T Consensus 121 l~~Gv~mi~k~l~~vL~k---~GVe~I~~~Ge~F 151 (196)
T PRK14145 121 LKEGIELIYRQFKKILDK---FGVKEIEAEGQIF 151 (196)
T ss_pred HHHHHHHHHHHHHHHHHH---CCCEEeCCCCCCC
Confidence 445677889999999999 9999999888754
No 27
>PRK14139 heat shock protein GrpE; Provisional
Probab=41.28 E-value=23 Score=25.15 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 7 NSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
++.=+..++..|..++.+ +++.+|..+|+.|
T Consensus 109 l~~Gv~mi~k~l~~vL~k---~Gv~~I~~~G~~F 139 (185)
T PRK14139 109 LREGVELTLKQLTSAFEK---GRVVEINPVGEKF 139 (185)
T ss_pred HHHHHHHHHHHHHHHHHH---CCCceeCCCCCCC
Confidence 445566788899999999 9999999998754
No 28
>PRK14140 heat shock protein GrpE; Provisional
Probab=40.35 E-value=20 Score=25.54 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCE
Q psy9434 8 SDTVEPRLVDFDELLSEPRFRSIEKIKTVGAC 39 (100)
Q Consensus 8 v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~ 39 (100)
+.=+..++..|..+..+ +|+.+|..+|+.
T Consensus 117 ~~Gv~mi~k~l~~~L~k---~GV~~i~~~Ge~ 145 (191)
T PRK14140 117 LKGVEMVHRQLLEALKK---EGVEVIEAVGEQ 145 (191)
T ss_pred HHHHHHHHHHHHHHHHH---CCCEeeCCCCCC
Confidence 44566788899999999 999999988874
No 29
>PRK14162 heat shock protein GrpE; Provisional
Probab=39.09 E-value=28 Score=24.87 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 6 KNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 6 ~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
..+.=++.++..|..++.+ +|+.+|..+|+.+
T Consensus 117 ~l~~Gvemi~k~l~~vL~~---~GV~~I~~~G~~F 148 (194)
T PRK14162 117 QLKKGVQMTLDHLVKALKD---HGVTEIKADGEKF 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH---CCCEEeCCCCCCC
Confidence 3456677788999999999 9999999888654
No 30
>PRK14157 heat shock protein GrpE; Provisional
Probab=38.87 E-value=21 Score=26.15 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 11 VEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 11 Ln~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
+..++..|..++.+ +++++|...|+.|
T Consensus 153 ~~~i~k~l~~vL~k---~GVe~I~~~Ge~F 179 (227)
T PRK14157 153 FKAVAAKIDKAFEK---FGVEKFGEKGEDF 179 (227)
T ss_pred HHHHHHHHHHHHHH---CCCEEeCCCCCCC
Confidence 45678899999999 9999999888754
No 31
>PRK14163 heat shock protein GrpE; Provisional
Probab=38.17 E-value=23 Score=25.74 Aligned_cols=31 Identities=3% Similarity=0.114 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 7 NSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
++.=++.++..|..++.+ +++.+|..+|+.|
T Consensus 112 l~~Gv~mi~k~l~~~L~k---~Gv~~I~~~G~~F 142 (214)
T PRK14163 112 LVGGFKSVAESLETTVAK---LGLQQFGKEGEPF 142 (214)
T ss_pred HHHHHHHHHHHHHHHHHH---CCCEEeCCCCCCC
Confidence 345567788899999999 9999999998765
No 32
>PRK14164 heat shock protein GrpE; Provisional
Probab=38.15 E-value=23 Score=25.77 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 11 VEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 11 Ln~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
|+.+...|-.++.+ +++++|..+|+.|
T Consensus 147 l~~i~~~l~~vL~k---~Gve~I~~~Ge~F 173 (218)
T PRK14164 147 LKAFSDKLTNVLAG---LKVEKFGEEGDAF 173 (218)
T ss_pred HHHHHHHHHHHHHH---CCCEEeCCCCCCC
Confidence 45577889999999 9999999888743
No 33
>PRK14153 heat shock protein GrpE; Provisional
Probab=37.88 E-value=30 Score=24.71 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 7 NSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
++.=+..++..|..++.+ +++.+|..+|+.|
T Consensus 112 l~~Gvemi~k~~~~vL~k---~Gv~~I~~~G~~F 142 (194)
T PRK14153 112 IVEGIEMVSKQFFSILEK---YGLERIECEGEEF 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHH---CCCeeeCCCCCCC
Confidence 445567788999999999 9999999998865
No 34
>PRK14143 heat shock protein GrpE; Provisional
Probab=36.47 E-value=33 Score=25.26 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 7 NSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
+.+-++.++..|..++.+ +|+.+|..+|+.|
T Consensus 147 l~~Gve~i~k~l~~~L~k---~GV~~i~~~G~~F 177 (238)
T PRK14143 147 LHRSYQGLYKQLVDVLKR---LGVSPMRVVGQEF 177 (238)
T ss_pred HHHHHHHHHHHHHHHHHH---CCCeeeCCCCCCC
Confidence 445667789999999999 9999999988754
No 35
>PRK14142 heat shock protein GrpE; Provisional
Probab=35.50 E-value=28 Score=25.46 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 11 VEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 11 Ln~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
++.++..|..++.+ +++.+|..+|+.|
T Consensus 110 v~~I~kqL~~iLek---~GVe~I~~~Ge~F 136 (223)
T PRK14142 110 LKSVADKLDSALTG---LGLVAFGAEGEDF 136 (223)
T ss_pred HHHHHHHHHHHHHH---CCCEEeCCCCCCC
Confidence 45688999999999 9999999888654
No 36
>PRK14141 heat shock protein GrpE; Provisional
Probab=35.04 E-value=36 Score=24.58 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 7 NSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
++.=+..++..|..++.+ +++.+|..+|+.|
T Consensus 116 l~eGv~mi~k~l~~vLek---~GV~~I~~~Ge~F 146 (209)
T PRK14141 116 LIEGVEMTERAMLNALER---HGVKKLDPEGQKF 146 (209)
T ss_pred HHHHHHHHHHHHHHHHHH---CCCEEECCCCCCC
Confidence 445566778899999999 9999999998654
No 37
>PRK14150 heat shock protein GrpE; Provisional
Probab=34.76 E-value=35 Score=24.24 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 7 NSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
++.=+..++..|..+..+ +|+.+|..+|+.|
T Consensus 118 ~~~Gv~mi~~~l~~~L~~---~Gv~~i~~~G~~F 148 (193)
T PRK14150 118 LIEGVELTLKSLLDTVAK---FGVEVVGPVGEPF 148 (193)
T ss_pred HHHHHHHHHHHHHHHHHH---CCCeeeCCCCCCC
Confidence 445667788889999999 9999999888754
No 38
>PRK14146 heat shock protein GrpE; Provisional
Probab=34.37 E-value=36 Score=24.67 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 7 NSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
++.=+..++..|..++.+ +|+.+|..+|+.+
T Consensus 133 l~~Gv~mi~k~l~~~L~k---~Gv~~i~~~G~~F 163 (215)
T PRK14146 133 FVEGVKMILKEFYSVLEK---SNVIRFDPKGEPF 163 (215)
T ss_pred HHHHHHHHHHHHHHHHHH---CcCeeeCCCCCCC
Confidence 455677889999999999 9999999888754
No 39
>KOG3003|consensus
Probab=33.97 E-value=36 Score=25.18 Aligned_cols=30 Identities=13% Similarity=0.386 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 8 SDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 8 v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
..-|......|-++..+ ||+.|..+||+-|
T Consensus 157 ~eGl~mte~ql~~vf~K---hGLekldPigekF 186 (236)
T KOG3003|consen 157 FEGLSMTEAQLKEVFAK---HGLEKLDPIGEKF 186 (236)
T ss_pred HhHHHHHHHHHHHHHHH---cCceecCCCCCCC
Confidence 34566678889999999 9999999999976
No 40
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=33.85 E-value=56 Score=26.67 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=37.5
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCC
Q psy9434 4 NQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPK 49 (100)
Q Consensus 4 ~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~ 49 (100)
+.++.+++++....|+..... ..+-+|..|||.+.-++||+..
T Consensus 5 ~~ei~~~i~~~i~~~~~~~~~---~~~g~V~sv~DgIa~v~Gl~~~ 47 (504)
T COG0056 5 PTEISSLIKQQIENFDVEAEV---KEVGTVISVGDGIARVSGLENV 47 (504)
T ss_pred HHHHHHHHHHHHHhcchhhhh---hccceEEEEecceEEEecCchh
Confidence 345778999999999999987 7888999999999999999763
No 41
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=31.74 E-value=3.5e+02 Score=23.64 Aligned_cols=68 Identities=7% Similarity=0.094 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcCCCceeEEE
Q psy9434 10 TVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHSFNHFFLRV 89 (100)
Q Consensus 10 lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~~~~~~iRI 89 (100)
+...+-+.+++.+.+ ++++-=++-.|-|+++.. ..+...+.+=-+++++.+++.+.....++.+-|
T Consensus 230 l~~~i~~~l~~~~~~---~~~~~r~~~~dry~~~~~-----------~~~l~~~~~~kF~iLd~ir~~~~~~~~~vTLSi 295 (838)
T PRK14538 230 IQGEYLSALSDFIEP---YEGYLKQLIDDRFLLLIN-----------RQNLDKMIENKFSILDTIRNISHKYQLKVTLSM 295 (838)
T ss_pred HHHHHHHHHHHHHHh---CCEEEEEecCCcEEEEEE-----------HHHHHHHHHhCCcHHHHHHHhhcCCCCceEEEE
Confidence 444555567777777 666666788899999873 346677777788899999988877777888888
Q ss_pred ee
Q psy9434 90 GS 91 (100)
Q Consensus 90 Gi 91 (100)
|+
T Consensus 296 Gi 297 (838)
T PRK14538 296 GI 297 (838)
T ss_pred EE
Confidence 88
No 42
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=31.29 E-value=48 Score=24.95 Aligned_cols=28 Identities=4% Similarity=0.099 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 11 VEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 11 Ln~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
++++...++.+..+ |.+..++.+||.+|
T Consensus 8 ~~ei~~~l~~l~~~--~p~~v~~~~iG~S~ 35 (300)
T cd06246 8 LNEIYSWIEFITER--HSDMLEKIHIGSSF 35 (300)
T ss_pred HHHHHHHHHHHHHH--CCCcEEEEecccCC
Confidence 67888899999876 67899999999887
No 43
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=31.13 E-value=27 Score=27.92 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCCcCCeEEEeeeCCEEE
Q psy9434 12 EPRLVDFDELLSEPRFRSIEKIKTVGACYM 41 (100)
Q Consensus 12 n~lf~~FD~l~~~~~~~~v~KiktiGd~ym 41 (100)
|-+|+.||++++=-+-|+++- .+||+.=
T Consensus 199 NPlye~fD~lLeI~~~yDVtl--SLGDglR 226 (423)
T TIGR00190 199 NPLYKNFDYILEIAKEYDVTL--SLGDGLR 226 (423)
T ss_pred CchHHHHHHHHHHHHHhCeee--eccCCcC
Confidence 679999998776211178876 6888653
No 44
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=31.02 E-value=40 Score=21.87 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhcC
Q psy9434 9 DTVEPRLVDFDELLSE 24 (100)
Q Consensus 9 ~lLn~lf~~FD~l~~~ 24 (100)
..|+..|.+||++++.
T Consensus 42 ~~l~kVy~~F~eLVe~ 57 (108)
T PF10664_consen 42 EALQKVYRKFDELVES 57 (108)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4688999999999998
No 45
>PF08987 DUF1892: Protein of unknown function (DUF1892); InterPro: IPR015080 Proteins in this entry, which are synthesised by Saccharomycetes, adopt a structure consisting of a four-stranded beta-sheet, with strand order beta2-beta1-beta4-beta3, and two alpha-helices, with an overall topology of beta-beta-alpha-beta-beta-alpha. They have no known function []. ; PDB: 1N6Z_A.
Probab=30.40 E-value=65 Score=21.21 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q psy9434 6 KNSDTVEPRLVDFDELLSE 24 (100)
Q Consensus 6 ~~v~lLn~lf~~FD~l~~~ 24 (100)
..+..||..|-.||+-+.-
T Consensus 49 ~~~d~lN~wFDkFDEeIci 67 (115)
T PF08987_consen 49 DEFDELNEWFDKFDEEICI 67 (115)
T ss_dssp T-HHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHhhcceeec
Confidence 3588999999999987763
No 46
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=29.86 E-value=33 Score=27.40 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 12 EPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 12 n~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
|-+|+.||++++=-+-|+++- .+||+.
T Consensus 198 NPly~~fD~lLeI~k~yDVtL--SLGDgl 224 (420)
T PF01964_consen 198 NPLYEHFDRLLEIAKEYDVTL--SLGDGL 224 (420)
T ss_dssp -HHHHTHHHHHHHHTTTT-EE--EE--TT
T ss_pred CcHHHhHHHHHHHHHHhCeeE--eccccc
Confidence 679999998877211288876 677754
No 47
>PRK03609 umuC DNA polymerase V subunit UmuC; Reviewed
Probab=29.61 E-value=1.8e+02 Score=22.63 Aligned_cols=61 Identities=21% Similarity=0.413 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHH-HHhhhcCCCcee
Q psy9434 8 SDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCL-DQVNKHSFNHFF 86 (100)
Q Consensus 8 v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~-~~~~~~~~~~~~ 86 (100)
.+++++++..+.+.... ++ +--|..+|+-++|... .. ....+|-++.+.+ +++ .+.
T Consensus 78 ~~~s~~i~~~l~~~tp~-----ve-~~siDE~~lDvt~~~~------l~-----~~~~~a~~i~~~I~~~~------gl~ 134 (422)
T PRK03609 78 ADMSNRVMSTLEELSPR-----VE-IYSIDEAFCDLTGVRN------CR-----DLTDFGREIRATVLQRT------HLT 134 (422)
T ss_pred HHHHHHHHHHHHHhCCC-----ce-EeccccceecCCCCcC------CC-----CHHHHHHHHHHHHHHHH------CCc
Confidence 45677777777765533 44 3468889999999743 11 1234555555542 222 377
Q ss_pred EEEee
Q psy9434 87 LRVGS 91 (100)
Q Consensus 87 iRIGi 91 (100)
.+|||
T Consensus 135 ~siGi 139 (422)
T PRK03609 135 VGVGI 139 (422)
T ss_pred eEEEe
Confidence 88888
No 48
>PF14485 DUF4431: Domain of unknown function (DUF4431)
Probab=29.45 E-value=81 Score=17.33 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCC
Q psy9434 12 EPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLD 47 (100)
Q Consensus 12 n~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~ 47 (100)
++-|+.+..+..+ +|+-.|+-|.|.+|--
T Consensus 8 ~~~~~~~~~~~Gk-------~V~V~G~l~~a~t~hH 36 (48)
T PF14485_consen 8 EEDYSYLKSLLGK-------RVSVTGKLFHAHTGHH 36 (48)
T ss_pred hhhhHHHHHhcCC-------eEEEEEEEeeccCccc
Confidence 4566777777776 7888899999998853
No 49
>PRK14158 heat shock protein GrpE; Provisional
Probab=28.16 E-value=59 Score=23.22 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcCCeEEEee-eCCEE
Q psy9434 6 KNSDTVEPRLVDFDELLSEPRFRSIEKIKT-VGACY 40 (100)
Q Consensus 6 ~~v~lLn~lf~~FD~l~~~~~~~~v~Kikt-iGd~y 40 (100)
.++.=+..++..|..+..+ +|+.+|.. +|+.|
T Consensus 117 ~i~~Gv~mi~k~l~~vLek---~Gv~~I~~~~G~~F 149 (194)
T PRK14158 117 AIIEGIRMTLSMLLSTLKK---FGVTPVEAEKGTPF 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH---CCCEEecCCCCCCC
Confidence 3455677788889999999 99999986 77643
No 50
>PF06198 DUF999: Protein of unknown function (DUF999); InterPro: IPR009340 This is a family of conserved Schizosaccharomyces pombe proteins with unknown function.
Probab=27.68 E-value=66 Score=21.31 Aligned_cols=19 Identities=11% Similarity=0.272 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q psy9434 6 KNSDTVEPRLVDFDELLSE 24 (100)
Q Consensus 6 ~~v~lLn~lf~~FD~l~~~ 24 (100)
++-.+||++|++|.+--+.
T Consensus 54 kik~flndlftefskfhns 72 (143)
T PF06198_consen 54 KIKEFLNDLFTEFSKFHNS 72 (143)
T ss_pred HHHHHHHhHHHHHHHhhhc
Confidence 3457999999999887654
No 51
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=27.47 E-value=34 Score=27.43 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCCcCCeEEEeeeCCEEE
Q psy9434 12 EPRLVDFDELLSEPRFRSIEKIKTVGACYM 41 (100)
Q Consensus 12 n~lf~~FD~l~~~~~~~~v~KiktiGd~ym 41 (100)
|-+|+.||++++=-+-|+++- .+||+.=
T Consensus 202 NPlye~fD~lLeI~~~yDVtl--SLGDglR 229 (431)
T PRK13352 202 NPLYEHFDYLLEILKEYDVTL--SLGDGLR 229 (431)
T ss_pred CchHHHHHHHHHHHHHhCeee--eccCCcC
Confidence 679999998876211178876 6888653
No 52
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=27.07 E-value=73 Score=21.96 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCC
Q psy9434 8 SDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDP 48 (100)
Q Consensus 8 v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~ 48 (100)
-.+|+++|+.|+.-+.+ +.-...+-++|+|.-=+-.
T Consensus 61 Hdll~~i~~~l~~~v~k-----VvI~d~~d~tyyA~L~~~~ 96 (151)
T COG1259 61 HDLLVEIFEELGARVEK-----VVIDDLIDNTYYATLILEQ 96 (151)
T ss_pred HHHHHHHHHHhCCcEEE-----EEEEEeccCeEEEEEEEEc
Confidence 47999999999988866 7777788889999876544
No 53
>PRK14148 heat shock protein GrpE; Provisional
Probab=26.54 E-value=47 Score=23.71 Aligned_cols=31 Identities=13% Similarity=0.291 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 7 NSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
++.=+..++..|..++.+ +|+.+|...|+.+
T Consensus 119 l~~Gv~mi~k~l~~vL~k---~Gv~~I~~~G~~F 149 (195)
T PRK14148 119 MKEGIELTAKMLVDILKK---NGVEELDPKGEKF 149 (195)
T ss_pred HHHHHHHHHHHHHHHHHH---CCCEEeCCCCCCC
Confidence 344566678899999999 9999998887653
No 54
>PRK10635 bacterioferritin; Provisional
Probab=26.22 E-value=56 Score=22.25 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=13.1
Q ss_pred CCccchHHHHHHHHHH
Q psy9434 1 MKANQKNSDTVEPRLV 16 (100)
Q Consensus 1 ~~~~~~~v~lLn~lf~ 16 (100)
|+.++++++.||+.++
T Consensus 1 m~~~~~vi~~LN~~L~ 16 (158)
T PRK10635 1 MKGDVKIINYLNKLLG 16 (158)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 8888999999997544
No 55
>PRK02406 DNA polymerase IV; Validated
Probab=25.34 E-value=2.9e+02 Score=20.64 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHH-HHhhhcCCCcee
Q psy9434 8 SDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCL-DQVNKHSFNHFF 86 (100)
Q Consensus 8 v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~-~~~~~~~~~~~~ 86 (100)
-..+++++..+..... .++ +..++.+|+-++|....- .. ...+|..+.+.+ +++ .+.
T Consensus 72 ~~~s~~i~~~l~~~sp-----~ve-~~siDe~~ldvt~~~~~~----~~------~~~la~~i~~~i~~~~------gl~ 129 (343)
T PRK02406 72 KEVSRQIREIFRRYTD-----LIE-PLSLDEAYLDVTDNKLCI----GS------ATLIAQEIRQDIFEEL------GLT 129 (343)
T ss_pred HHHHHHHHHHHHHhCC-----ceE-EccCCeEEEeccCccccC----CC------HHHHHHHHHHHHHHHH------CCC
Confidence 3566667766665543 344 346788999999875411 11 224555555554 222 366
Q ss_pred EEEee
Q psy9434 87 LRVGS 91 (100)
Q Consensus 87 iRIGi 91 (100)
.+|||
T Consensus 130 ~siGi 134 (343)
T PRK02406 130 ASAGV 134 (343)
T ss_pred eEEEe
Confidence 77887
No 56
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=25.09 E-value=66 Score=24.27 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 11 VEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 11 Ln~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
+.++...++++..+ |.+..+++.||.+|
T Consensus 7 ~~ei~~~l~~L~~~--~p~~v~l~~iG~S~ 34 (298)
T cd06247 7 MDEIYNWMDQIKEK--YSELVSQHYLGCTY 34 (298)
T ss_pred HHHHHHHHHHHHHH--CCCcEEEEeceECc
Confidence 67888889999876 67899999999887
No 57
>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3.1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....
Probab=24.74 E-value=81 Score=22.01 Aligned_cols=11 Identities=36% Similarity=0.437 Sum_probs=8.0
Q ss_pred CCceeEEEeee
Q psy9434 82 FNHFFLRVGSG 92 (100)
Q Consensus 82 ~~~~~iRIGiG 92 (100)
..-.++|||||
T Consensus 123 ~~f~RlrIGIG 133 (184)
T PF01195_consen 123 EDFPRLRIGIG 133 (184)
T ss_dssp SGSEEEEEEE-
T ss_pred ccceeEEEecC
Confidence 34689999994
No 58
>KOG3099|consensus
Probab=24.34 E-value=67 Score=24.81 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=15.5
Q ss_pred CceeEEEee---eceEEEEe
Q psy9434 83 NHFFLRVGS---GPFLIFQV 99 (100)
Q Consensus 83 ~~~~iRIGi---GpvvaGVV 99 (100)
..+.++||| |..++|||
T Consensus 164 ~~VTvLIGi~~kg~av~GVI 183 (340)
T KOG3099|consen 164 DCVTVLIGIAYKGRAVGGVI 183 (340)
T ss_pred ceEEEEEEEEecCcccceee
Confidence 479999999 99999998
No 59
>PRK14155 heat shock protein GrpE; Provisional
Probab=23.96 E-value=69 Score=23.08 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCeEEEee-eCCEE
Q psy9434 7 NSDTVEPRLVDFDELLSEPRFRSIEKIKT-VGACY 40 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~~~~~~~v~Kikt-iGd~y 40 (100)
++.=+..++..|..++.+ +++.+|.. +|+.+
T Consensus 95 i~~Gvemi~k~~~~~L~k---~GV~~I~~~~G~~F 126 (208)
T PRK14155 95 FIIGVEMTEKELLGAFER---NGLKKIDPAKGDKF 126 (208)
T ss_pred HHHHHHHHHHHHHHHHHH---CCCceecCCCCCCC
Confidence 445577788999999999 99999986 78654
No 60
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=23.90 E-value=1.7e+02 Score=17.51 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCC
Q psy9434 14 RLVDFDELLSEPRFRSIEKIKTVGACYMAASGL 46 (100)
Q Consensus 14 lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl 46 (100)
-|..|-+-..+ |+++ .||-|...+|.-+-
T Consensus 8 nf~afk~was~---ygve-fktngsqtlaii~~ 36 (79)
T PF09061_consen 8 NFNAFKEWASK---YGVE-FKTNGSQTLAIIKN 36 (79)
T ss_dssp -HHHHHHHHHT---TT-E-EEEETTEEEEEETT
T ss_pred cHHHHHHHHHH---hCeE-EecCCceEEEeecC
Confidence 48889999999 8987 79999999998763
No 61
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=23.88 E-value=75 Score=24.01 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 11 VEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 11 Ln~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
++++...++.+..+ |.+.-++.+||.+|
T Consensus 5 ~~ei~~~l~~L~~~--~p~~v~l~~iG~S~ 32 (300)
T cd03872 5 LEEIESWMFYMNKT--HSDLVHLFSIGKSY 32 (300)
T ss_pred HHHHHHHHHHHHHH--CCCceEEEEeeecC
Confidence 67888999999876 67888999999887
No 62
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=23.82 E-value=79 Score=22.35 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 7 NSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
.+.=+..++..|...+.+ +++.+|...|+.+
T Consensus 116 l~~Gvem~~~~l~~~L~k---~Gv~~i~~~Ge~F 146 (193)
T COG0576 116 LLEGVEMTLDQLLDALEK---LGVEEIGPEGEKF 146 (193)
T ss_pred HHHHHHHHHHHHHHHHHH---CCCEEeCCCCCCC
Confidence 445577788889999999 9999999988654
No 63
>PF10379 nec1: Virulence protein nec1; InterPro: IPR018836 The Nec1 protein has necrogenic activity on excised potato tuber tissue, and the encoding gene is highly conserved in plant-pathogenic Streptomyces spp. The G+C content of nec1 indicates lateral transfer from an unrelated taxon, but its origins are unclear. Deletion analysis of nec1 demonstrated that the 151-amino-acid C-terminal region of the Nec1 protein is sufficient to confer necrogenic activity. Streptomyces turgidiscabies containing a nec1 deletion was greatly compromised in virulence on Arabidopsis thaliana (Mouse-ear cress), Nicotiana tabacum (Common tobacco), and Raphanus sativus (Radish) seedlings. The wild-type strain, S. turgidiscabies Car8, aggressively colonized and infected the root meristem of radish, whereas the delta-nec1 mutant Car811 did not. Taken together, the data suggest that Nec1 is a secreted virulence protein with a conserved plant cell target that acts early in plant infection [].
Probab=23.52 E-value=40 Score=23.08 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=16.9
Q ss_pred EEEeeeCCEEEEeeCCCCCCCCCC
Q psy9434 31 EKIKTVGACYMAASGLDPKHHSHL 54 (100)
Q Consensus 31 ~KiktiGd~yma~~Gl~~~~~~~~ 54 (100)
.||.|+|| .|-.+|+.++.+++.
T Consensus 3 lkirtlgd-lmrtsgvtpktqsS~ 25 (184)
T PF10379_consen 3 LKIRTLGD-LMRTSGVTPKTQSSC 25 (184)
T ss_pred ceeeehhh-HHhhcCCCccccccc
Confidence 48999999 477889877665433
No 64
>PRK03858 DNA polymerase IV; Validated
Probab=23.51 E-value=2.5e+02 Score=21.41 Aligned_cols=62 Identities=13% Similarity=0.247 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHH-HhhhcCCCcee
Q psy9434 8 SDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLD-QVNKHSFNHFF 86 (100)
Q Consensus 8 v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~-~~~~~~~~~~~ 86 (100)
-++.++++.-+.+.... ++ .-.++.+|+-++|....- . ...++|..+.+.+. ++ .+.
T Consensus 77 ~~~s~~i~~~l~~~s~~-----ve-~~siDe~~ldvt~~~~~~----~------~~~~la~~ir~~i~~~~------gl~ 134 (396)
T PRK03858 77 SRASKAVFEVFRDTTPL-----VE-GLSIDEAFLDVGGLRRIS----G------TPVQIAARLRRRVREEV------GLP 134 (396)
T ss_pred HHHHHHHHHHHHHhCCc-----eE-EecCCeEEEEcccccccc----C------CHHHHHHHHHHHHHHHH------CCC
Confidence 35677777777766543 44 335788999999974310 1 12345666666554 23 266
Q ss_pred EEEee
Q psy9434 87 LRVGS 91 (100)
Q Consensus 87 iRIGi 91 (100)
.+|||
T Consensus 135 ~svGi 139 (396)
T PRK03858 135 ITVGV 139 (396)
T ss_pred eEEEE
Confidence 77777
No 65
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=23.17 E-value=4.2e+02 Score=22.59 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHHHHHHHHHH-HHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcCCCcee
Q psy9434 8 SDTVEPRLVDF-DELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHSFNHFF 86 (100)
Q Consensus 8 v~lLn~lf~~F-D~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~~~~~~ 86 (100)
...+|.+.+.| ++.+.+ |+++-=++-+|-|+++..- .-...+.+-=+.+++.+++.......++.
T Consensus 197 rs~inS~V~s~l~~~a~~---~~if~rr~s~drf~~~~~~-----------~~L~~l~~~kF~iLd~~RE~s~~~~ipLT 262 (655)
T COG3887 197 RSQINSFVTSFLEEWATE---YNIFLRRYSSDRFYAFTNY-----------KILEKLEEDKFSILDEFREESSQKNIPLT 262 (655)
T ss_pred HHHHHHHHHHHHHHHHHH---hhhhheeecCCeEEEEecH-----------HHHHHHHHhhhHHHHHHHHHhhccCcceE
Confidence 45566665554 555666 8888888999999999741 23456666677777777777766677999
Q ss_pred EEEee
Q psy9434 87 LRVGS 91 (100)
Q Consensus 87 iRIGi 91 (100)
+-||+
T Consensus 263 LSiGv 267 (655)
T COG3887 263 LSIGV 267 (655)
T ss_pred EEEEe
Confidence 99998
No 66
>cd03468 PolY_like DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.
Probab=23.09 E-value=2.7e+02 Score=20.49 Aligned_cols=35 Identities=3% Similarity=0.012 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCC
Q psy9434 8 SDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDP 48 (100)
Q Consensus 8 v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~ 48 (100)
-+..++++..+...... ++ +.-++.+|+=++|...
T Consensus 75 ~~~s~~i~~~l~~~s~~-----ve-~~s~de~~ldvs~~~~ 109 (335)
T cd03468 75 ARALQELALWLLRFTPL-----VA-LDGPDGLLLDVTGCLH 109 (335)
T ss_pred HHHHHHHHHHHHhcCCc-----cc-cCCCCeEEEEcccchh
Confidence 45667777777665543 43 3367889999998754
No 67
>KOG0544|consensus
Probab=22.44 E-value=70 Score=20.68 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=13.8
Q ss_pred CCceeEEEeeeceEEEE
Q psy9434 82 FNHFFLRVGSGPFLIFQ 98 (100)
Q Consensus 82 ~~~~~iRIGiGpvvaGV 98 (100)
..+|+.+||.|.|+-|.
T Consensus 44 ~kPfkf~IGkgeVIkGw 60 (108)
T KOG0544|consen 44 GKPFKFKIGKGEVIKGW 60 (108)
T ss_pred CCCeeEEecCcceeech
Confidence 46899999998887663
No 68
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=22.13 E-value=1.2e+02 Score=20.79 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=28.3
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCC
Q psy9434 4 NQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDP 48 (100)
Q Consensus 4 ~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~ 48 (100)
++++.++||+ .+.+.. ++.++..+++.||.|-+..=|+.
T Consensus 13 ~e~Vw~~L~d----pe~~a~--ciPG~qs~e~~g~e~~~~v~l~i 51 (146)
T COG3427 13 PEAVWEFLND----PEQVAA--CIPGVQSVETNGDEYTAKVKLKI 51 (146)
T ss_pred HHHHHHHhcC----HHHHHh--hcCCcceeeecCCeEEEEEEEee
Confidence 4566677765 344442 35899999999999998876665
No 69
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=22.00 E-value=72 Score=22.14 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=13.7
Q ss_pred CCccchHHHHHHHHHH
Q psy9434 1 MKANQKNSDTVEPRLV 16 (100)
Q Consensus 1 ~~~~~~~v~lLn~lf~ 16 (100)
||-.++|++.||++..
T Consensus 1 MkG~~~Vi~~LN~~L~ 16 (157)
T COG2193 1 MKGDPKVIRLLNEALG 16 (157)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 8889999999998654
No 70
>TIGR00447 pth peptidyl-tRNA hydrolase. The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function.
Probab=21.70 E-value=1.1e+02 Score=21.50 Aligned_cols=10 Identities=50% Similarity=0.687 Sum_probs=7.9
Q ss_pred CceeEEEeee
Q psy9434 83 NHFFLRVGSG 92 (100)
Q Consensus 83 ~~~~iRIGiG 92 (100)
+-.++|||||
T Consensus 126 ~f~RlrIGIG 135 (188)
T TIGR00447 126 NFNRLRIGIG 135 (188)
T ss_pred CcceEEEEeC
Confidence 4678999994
No 71
>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.
Probab=21.56 E-value=97 Score=21.52 Aligned_cols=10 Identities=40% Similarity=0.610 Sum_probs=8.0
Q ss_pred CceeEEEeee
Q psy9434 83 NHFFLRVGSG 92 (100)
Q Consensus 83 ~~~~iRIGiG 92 (100)
+-.++|||||
T Consensus 123 ~f~RlriGIG 132 (171)
T cd00462 123 DFPRLRIGIG 132 (171)
T ss_pred CeeEEEEEeC
Confidence 4689999993
No 72
>KOG0496|consensus
Probab=20.87 E-value=4.9e+02 Score=22.21 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCCcCCeEEEeeeCCEEEEe----eCCCCCC---------CCCCCchHHHHHHHHhHHHHHH
Q psy9434 15 LVDFDELLSEPRFRSIEKIKTVGACYMAA----SGLDPKH---------HSHLDELDHVCALIDFSLAIKQ 72 (100)
Q Consensus 15 f~~FD~l~~~~~~~~v~KiktiGd~yma~----~Gl~~~~---------~~~~~~~~h~~~~~~~al~m~~ 72 (100)
+..|=+++.+ .+++-+--|| .|.|+ +|+|.=. .++++-..|.++-.+--+.|++
T Consensus 90 lvkFikl~~~---~GLyv~LRiG-PyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk 156 (649)
T KOG0496|consen 90 LVKFIKLIHK---AGLYVILRIG-PYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK 156 (649)
T ss_pred HHHHHHHHHH---CCeEEEecCC-CeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH
Confidence 3567889999 9999999999 88887 5777311 1344556677777777777766
No 73
>KOG0185|consensus
Probab=20.59 E-value=1.4e+02 Score=22.28 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=16.0
Q ss_pred CcCCeEEEeeeCCEEEEeeC
Q psy9434 26 RFRSIEKIKTVGACYMAASG 45 (100)
Q Consensus 26 ~~~~v~KiktiGd~yma~~G 45 (100)
||.+++++.-+||.-+...+
T Consensus 68 R~~nVeRi~kVgdntllG~s 87 (256)
T KOG0185|consen 68 RYKNVERIFKVGDNTLLGAS 87 (256)
T ss_pred hhcCceeeEEecCceEEecC
Confidence 47999999999998665543
No 74
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=20.54 E-value=1.4e+02 Score=19.10 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCCcCCeEEEeeeCCE
Q psy9434 13 PRLVDFDELLSEPRFRSIEKIKTVGAC 39 (100)
Q Consensus 13 ~lf~~FD~l~~~~~~~~v~KiktiGd~ 39 (100)
.+....|..++. |++-||+..+++
T Consensus 31 ~vi~Ei~~aL~~---reLIKVkvl~~~ 54 (97)
T COG1534 31 GVIKEIDRALEA---RELIKVKVLQNA 54 (97)
T ss_pred HHHHHHHHHHHh---CCcEEEEeeccc
Confidence 567788888888 999999987544
No 75
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=20.45 E-value=1e+02 Score=23.29 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 10 TVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 10 lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
-++++...+|.+... |.+.-++.+||.++
T Consensus 8 ~~~ei~~~l~~L~~~--~p~~v~~~~iG~S~ 36 (301)
T cd03870 8 TLDEIYDFMDLLVAE--HPNLVSKLQIGRSY 36 (301)
T ss_pred CHHHHHHHHHHHHHH--CCCceEEEecccCC
Confidence 367888889999876 57888888999876
No 76
>PRK14161 heat shock protein GrpE; Provisional
Probab=20.28 E-value=1.1e+02 Score=21.56 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCeEEEee-eCCEE
Q psy9434 7 NSDTVEPRLVDFDELLSEPRFRSIEKIKT-VGACY 40 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~~~~~~~v~Kikt-iGd~y 40 (100)
+++=+..++..|..++.+ +|+.+|.. .|+.+
T Consensus 100 ~~~Gv~mi~k~l~~vL~~---~Gv~~I~~~~G~~F 131 (178)
T PRK14161 100 IIAGVQMTKDELDKVFHK---HHIEEIKPEIGSMF 131 (178)
T ss_pred HHHHHHHHHHHHHHHHHH---CCCEEecCCCCCCC
Confidence 455666778899999999 99999976 57643
No 77
>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast. CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).
Probab=20.20 E-value=1.3e+02 Score=21.33 Aligned_cols=10 Identities=30% Similarity=0.404 Sum_probs=7.9
Q ss_pred CceeEEEeee
Q psy9434 83 NHFFLRVGSG 92 (100)
Q Consensus 83 ~~~~iRIGiG 92 (100)
.-.++|||||
T Consensus 127 ~f~RlrIGIG 136 (191)
T cd02406 127 EFPRLSIGIG 136 (191)
T ss_pred CeEEEEEEeC
Confidence 4689999993
Done!