Query psy9434
Match_columns 100
No_of_seqs 132 out of 1007
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:15:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ab8_A Adenylyl cyclase; lyase 99.9 2.6E-22 9E-27 142.1 11.8 97 3-99 37-140 (220)
2 1azs_A VC1; complex (lyase/hyd 99.9 9.3E-22 3.2E-26 140.0 10.1 87 4-99 54-142 (220)
3 3uvj_A Guanylate cyclase solub 99.9 5.8E-22 2E-26 140.7 8.5 88 3-99 33-122 (225)
4 2wz1_A Guanylate cyclase solub 99.9 2.3E-21 7.9E-26 137.4 9.1 89 4-99 36-126 (219)
5 3et6_A Soluble guanylyl cyclas 99.9 4.3E-21 1.5E-25 132.2 10.0 88 3-99 28-118 (190)
6 1yk9_A Adenylate cyclase; beta 99.8 2.2E-21 7.5E-26 136.0 4.0 87 4-99 30-118 (204)
7 2w01_A Adenylate cyclase; guan 99.8 1.1E-19 3.9E-24 127.2 10.7 87 4-99 34-126 (208)
8 1wc3_A Adenylate cyclase; solu 99.8 3.3E-19 1.1E-23 126.0 11.5 89 4-99 47-147 (219)
9 3r5g_A CYAB; adenylyl cyclase, 99.8 4.2E-19 1.5E-23 122.7 11.1 90 3-99 28-124 (198)
10 1fx2_A Receptor-type adenylate 99.7 6.5E-17 2.2E-21 114.6 8.9 80 4-99 31-148 (235)
11 1y10_A Hypothetical protein RV 99.7 5.7E-17 1.9E-21 124.6 8.1 74 4-98 235-310 (407)
12 1ybt_A Hydrolase, alpha/beta h 99.6 2.7E-16 9.4E-21 108.5 6.7 73 4-98 37-111 (184)
13 3mr7_A Adenylate/guanylate cyc 99.6 1.4E-15 4.9E-20 104.6 8.7 77 5-97 27-108 (189)
14 4am5_A Bacterioferritin; metal 55.8 5.9 0.0002 25.5 1.9 17 1-17 1-17 (159)
15 1dkg_A Nucleotide exchange fac 44.3 22 0.00075 24.3 3.4 31 7-40 119-149 (197)
16 2qv6_A MJ0145, GTP cyclohydrol 42.5 91 0.0031 22.3 7.8 35 8-45 156-190 (268)
17 3a6m_A Protein GRPE, HSP-70 co 33.4 21 0.0007 24.0 1.8 31 7-40 96-126 (177)
18 1n6z_A Hypothetical 12.3 kDa p 27.8 42 0.0014 20.7 2.4 17 7-23 49-65 (105)
19 1ryp_H 20S proteasome; multica 27.4 70 0.0024 21.0 3.7 21 28-48 38-59 (205)
20 3gvy_A Bacterioferritin; iron 25.3 40 0.0014 21.1 2.1 16 1-16 1-16 (161)
21 3r2k_A Bacterioferritin, BFR; 24.2 43 0.0015 20.7 2.1 16 1-16 1-16 (154)
22 3uoi_A Bacterioferritin, BFR; 23.6 45 0.0015 20.8 2.1 16 1-16 3-18 (161)
23 1bby_A RAP30; average structur 23.5 49 0.0017 18.9 2.0 12 9-20 8-19 (69)
24 2p06_A Hypothetical protein AF 23.0 52 0.0018 19.9 2.1 16 9-24 60-75 (114)
25 2nps_B Syntaxin 13, vesicle-as 21.3 71 0.0024 17.7 2.4 19 6-24 13-31 (71)
26 1gl2_B Syntaxin 7; membrane pr 21.0 75 0.0025 17.4 2.4 19 6-24 16-34 (65)
27 2oct_A Cystatin B; stefin, amy 20.9 1.4E+02 0.0048 17.6 4.5 17 55-71 11-27 (98)
28 4ani_A Protein GRPE; chaperone 20.2 33 0.0011 23.9 0.9 30 8-40 139-168 (213)
No 1
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*
Probab=99.88 E-value=2.6e-22 Score=142.10 Aligned_cols=97 Identities=39% Similarity=0.659 Sum_probs=82.2
Q ss_pred ccchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCC-----CCCCchHHHHHHHHhHHHHHHHHHHh
Q psy9434 3 ANQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHH-----SHLDELDHVCALIDFSLAIKQCLDQV 77 (100)
Q Consensus 3 ~~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~-----~~~~~~~h~~~~~~~al~m~~~~~~~ 77 (100)
.|++++++||++|+.||+++.+.+|++++|+||+||+|||++|+|.... +.....+|+.+++++|++|++.++++
T Consensus 37 ~p~~~~~~Ln~~~~~~~~~i~~~~~~g~~~ik~iGD~~ma~fg~p~~~~~~~~~~~~~~~~~a~~a~~~Al~~~~~l~~~ 116 (220)
T 1ab8_A 37 EGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAI 116 (220)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEECCCCSCCC--------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeCceEEEEECCCccccccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999998223489999999999999999987321 01124689999999999999999999
Q ss_pred hhcCCCceeEEEee--eceEEEEe
Q psy9434 78 NKHSFNHFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 78 ~~~~~~~~~iRIGi--GpvvaGVV 99 (100)
|.....++++|||| |||++|+|
T Consensus 117 ~~~~~~~l~~rIGIh~G~v~~G~i 140 (220)
T 1ab8_A 117 NKHSFNDFKLRVGINHGPVIAGVI 140 (220)
T ss_dssp HTTTTCCCCCEEEEEEEEEEEEEE
T ss_pred hhccCCceEEEEEEEeeeEEEEee
Confidence 98777799999999 99999986
No 2
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*
Probab=99.86 E-value=9.3e-22 Score=140.02 Aligned_cols=87 Identities=24% Similarity=0.376 Sum_probs=81.6
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcCCC
Q psy9434 4 NQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHSFN 83 (100)
Q Consensus 4 ~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~~~ 83 (100)
+++++++||++|+.||+++.+ ++++++||+||+|||++|+|. +..+|+.+++++|++|++.+++++.....
T Consensus 54 ~~~~~~~Ln~~~~~~~~~i~~---~gG~v~k~iGD~~ma~fg~p~------~~~~~a~~Av~~Al~m~~~l~~~~~~~~~ 124 (220)
T 1azs_A 54 AQELVMTLNELFARFDKLAAE---NHCLRIKILGDCYYCVSGLPE------ARADHAHCCVEMGMDMIEAISLVREMTGV 124 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HTEEEEEEETTEEEEEESCSS------CCSTHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHH---cCcEEEEEeCCeEEEEECCCC------CChHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 567899999999999999999 999999999999999999998 66789999999999999999999876667
Q ss_pred ceeEEEee--eceEEEEe
Q psy9434 84 HFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 84 ~~~iRIGi--GpvvaGVV 99 (100)
++++|||| |||++|+|
T Consensus 125 ~l~irIGI~tG~v~~G~v 142 (220)
T 1azs_A 125 NVNMRVGIHSGRVHCGVL 142 (220)
T ss_dssp CCEEEEEEEEEEEEEEEC
T ss_pred CcEEEEEEEEeEEEEEEe
Confidence 99999999 99999986
No 3
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens}
Probab=99.86 E-value=5.8e-22 Score=140.72 Aligned_cols=88 Identities=20% Similarity=0.290 Sum_probs=82.7
Q ss_pred ccchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcCC
Q psy9434 3 ANQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHSF 82 (100)
Q Consensus 3 ~~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~~ 82 (100)
.+++++.+||++|+.||+++.+ |+++++||+||+|||++|+|. +..+|+.+++.+|++|++.+++++....
T Consensus 33 ~~~~~~~~ln~~~~~~~~~i~~---~~g~v~k~~GD~~ma~fg~p~------~~~~~a~~a~~~al~~~~~~~~~~~~~~ 103 (225)
T 3uvj_A 33 SPLQVITMLNALYTRFDQQCGE---LDVYKVETIGDAYCVAGGLHK------ESDTHAVQIALMALKMMELSDEVMSPHG 103 (225)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH---HTCEEECCSTTCEEEEESSSS------CCTTHHHHHHHHHHHHHHHHTTSBCTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHh---cCeEEEEeeCcEEEEEECCCC------CchHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3678899999999999999999 999999999999999999998 7788999999999999999999988777
Q ss_pred CceeEEEee--eceEEEEe
Q psy9434 83 NHFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 83 ~~~~iRIGi--GpvvaGVV 99 (100)
.++++|||| |||++|+|
T Consensus 104 ~~l~~riGih~G~v~~G~i 122 (225)
T 3uvj_A 104 EPIKMRIGLHSGSVFAGVV 122 (225)
T ss_dssp CBCCEEEEEEEEEEEEEEE
T ss_pred CceEEEEEEEeccEEEEEe
Confidence 899999999 99999987
No 4
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Probab=99.85 E-value=2.3e-21 Score=137.39 Aligned_cols=89 Identities=21% Similarity=0.290 Sum_probs=80.0
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcCCC
Q psy9434 4 NQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHSFN 83 (100)
Q Consensus 4 ~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~~~ 83 (100)
+++++++||++|+.||+++.+...|+++|+||+||+|||++|+|. +..+|+.+++++|++|++.+++++.. ..
T Consensus 36 ~~~~~~~Ln~~~~~~~~~i~~~~~~~g~~~k~~GD~~ma~fg~p~------~~~~~a~~A~~~Al~~~~~~~~~~~~-~~ 108 (219)
T 2wz1_A 36 AMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPE------PCIHHARSICHLALDMMEIAGQVQVD-GE 108 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCTTCEEECCCTTCEEEEESSSS------CCTTHHHHHHHHHHHHHHHHTTCEET-TE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCEEEEeecCCEEEEEECCCC------CChhHHHHHHHHHHHHHHHHHHHhcc-CC
Confidence 678999999999999999992112899999999999999999998 66789999999999999999988754 66
Q ss_pred ceeEEEee--eceEEEEe
Q psy9434 84 HFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 84 ~~~iRIGi--GpvvaGVV 99 (100)
++++|||| |||++|+|
T Consensus 109 ~l~~rIGi~~G~v~~G~i 126 (219)
T 2wz1_A 109 SVQITIGIHTGEVVTGVI 126 (219)
T ss_dssp ECCEEEEEEEEEEEEEEE
T ss_pred ceEEEEEEEEEEEEEEEe
Confidence 89999999 99999986
No 5
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=99.85 E-value=4.3e-21 Score=132.22 Aligned_cols=88 Identities=23% Similarity=0.342 Sum_probs=79.5
Q ss_pred ccchHHHHHHHHHHHHHHHhcCCCcC-CeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcC
Q psy9434 3 ANQKNSDTVEPRLVDFDELLSEPRFR-SIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHS 81 (100)
Q Consensus 3 ~~~~~v~lLn~lf~~FD~l~~~~~~~-~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~ 81 (100)
.+++++++||++|+.|++++.+ | +++++|++||+|||++|+|. +..+|+.+++++|++|++.+++++...
T Consensus 28 ~~~~~~~~l~~~~~~~~~~i~~---~~g~~~vk~~GD~~~a~fg~~~------~~~~~~~~a~~~al~~~~~~~~~~~~~ 98 (190)
T 3et6_A 28 SPLEVXSLLDELYQRFDAAIEE---YPQLYKVETIGDAYMVVCNVTV------PCDDHADVLLEFALRMHEEASRVASSL 98 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGG---CTTEEEEECTTSCEEEEESSSS------CCSTHHHHHHHHHHHHHHHHHTSCCC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHH---cCCEEEEEEeCCEEEEEECCCC------CchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3578899999999999999999 7 99999999999999999998 677899999999999999999988877
Q ss_pred CCceeEEEee--eceEEEEe
Q psy9434 82 FNHFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 82 ~~~~~iRIGi--GpvvaGVV 99 (100)
..++++|||| |||++|+|
T Consensus 99 ~~~l~~riGi~~G~v~~g~v 118 (190)
T 3et6_A 99 GEPVRIRVGMHSGPVVAGVV 118 (190)
T ss_dssp --CCCEEEEEEEEEEEEEEE
T ss_pred CCCceEEEEEEeccEEEEec
Confidence 7789999999 99999986
No 6
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}
Probab=99.83 E-value=2.2e-21 Score=135.98 Aligned_cols=87 Identities=32% Similarity=0.443 Sum_probs=81.5
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcCCC
Q psy9434 4 NQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHSFN 83 (100)
Q Consensus 4 ~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~~~ 83 (100)
+++++++||++|+.|++++.+ |+++++||+||+|||++|+|. +..+|+.+++++|++|++.+++++.....
T Consensus 30 ~~~~~~~ln~~~~~~~~~i~~---~gG~v~k~~GD~~ma~fg~p~------~~~~~a~~A~~~Al~~~~~~~~~~~~~~~ 100 (204)
T 1yk9_A 30 PADLVRFLDRLYSAFDELVDQ---HGLEKIEVSGDSYMVVSGVPR------PRPDHTQALADFALDMTNVAAQLKDPRGN 100 (204)
T ss_dssp SSSTTTHHHHHHTTTTGGGTT---SSCEECCCSSSCEEEESCCSS------CCTTHHHHHHTHHHHHHHHTTTCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH---cCCEEEEEeCCeEEEEECCCC------CChHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 567899999999999999999 999999999999999999998 66789999999999999999999887777
Q ss_pred ceeEEEee--eceEEEEe
Q psy9434 84 HFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 84 ~~~iRIGi--GpvvaGVV 99 (100)
++++|||| |+|++|+|
T Consensus 101 ~l~~rIGI~tG~v~~g~v 118 (204)
T 1yk9_A 101 PVPLRVGLATGPVVAGVV 118 (204)
T ss_dssp CCCEEEEEEEECEEECCC
T ss_pred CceEEEEEEeeEEEEEEe
Confidence 99999999 99999976
No 7
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=99.82 E-value=1.1e-19 Score=127.17 Aligned_cols=87 Identities=9% Similarity=0.194 Sum_probs=79.4
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhc---
Q psy9434 4 NQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKH--- 80 (100)
Q Consensus 4 ~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~--- 80 (100)
+++++++||++|+.|++++.+ |+++++||+||+|||++|+|. +..+|+.+++++|++|++.++++|..
T Consensus 34 ~~~~~~~l~~~~~~~~~~i~~---~~G~v~k~~GD~~~a~fg~p~------~~~~~a~~Av~~Al~~~~~l~~~~~~~~~ 104 (208)
T 2w01_A 34 PEEVVKVLNIYFGKMADVITH---HGGTIDEFMGDGILVLFGAPT------SQQDDALRAVACGVEMQLALREVNQQVTG 104 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---TTCEEEEEETTEEEEEESSSS------CCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---cCCEEEEEEcCEEEEEECCCC------CChhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567899999999999999999 999999999999999999998 66789999999999999999988753
Q ss_pred -CCCceeEEEee--eceEEEEe
Q psy9434 81 -SFNHFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 81 -~~~~~~iRIGi--GpvvaGVV 99 (100)
...++++|||| |+|++|+|
T Consensus 105 ~~~~~l~~riGi~~G~v~~g~v 126 (208)
T 2w01_A 105 LGLQPLEMGIGINTGEVVVGNI 126 (208)
T ss_dssp TTCCCCCCEEEEEEEEEEEEEE
T ss_pred cCCCceEEEEEEEeeEEEEEEe
Confidence 34579999999 99999986
No 8
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=99.81 E-value=3.3e-19 Score=126.04 Aligned_cols=89 Identities=18% Similarity=0.152 Sum_probs=78.9
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhc---
Q psy9434 4 NQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKH--- 80 (100)
Q Consensus 4 ~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~--- 80 (100)
+++++++||++|+.+++++.+ ++++++||+||+|||++|+|... +..+|+.+++++|++|++.++++|..
T Consensus 47 ~~~~~~~Ln~~~~~~~~~i~~---~gG~v~k~iGD~~ma~fg~p~~~----~~~~~a~~Av~~Al~~~~~l~~~~~~~~~ 119 (219)
T 1wc3_A 47 SQGVAELLNEYLGEMTRAVFE---NQGTVDKFVGDAIMALYGAPEEM----SPSEQVRRAIATARQMLVALEKLNQGWQE 119 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---TTCEEEEEETTEEEEEESSSSCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---cCCEEEEEEcCeEEEEECCCCCC----CChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567899999999999999999 99999999999999999999731 35689999999999999999988752
Q ss_pred -------CCCceeEEEee--eceEEEEe
Q psy9434 81 -------SFNHFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 81 -------~~~~~~iRIGi--GpvvaGVV 99 (100)
...++++|||| |||++|+|
T Consensus 120 ~~~~~~~~~~~l~~rIGIh~G~v~~G~v 147 (219)
T 1wc3_A 120 RGLVGRNEVPPVRFRCGIHQGMAVVGLF 147 (219)
T ss_dssp HTSSSSTTCCCCEEEEEEEEEEEEEEEE
T ss_pred cccccccCCCccEEEEEEEeceEEEEEc
Confidence 23579999999 99999986
No 9
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=99.80 E-value=4.2e-19 Score=122.73 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=79.3
Q ss_pred ccchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhc--
Q psy9434 3 ANQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKH-- 80 (100)
Q Consensus 3 ~~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~-- 80 (100)
.+++++++||++|+.|++++.+ |+++++||+||+|||++|+|... +..+|+.+++++|++|++.++.++..
T Consensus 28 ~~~~~~~~l~~~~~~~~~~i~~---~~G~v~k~~GD~~~a~fg~p~~~----~~~~~a~~a~~~al~i~~~~~~~~~~~~ 100 (198)
T 3r5g_A 28 EAEALTDLLNNYLNEMSKIALK---YGGTIDKFVGDCVMVFFGDPSTQ----GAKKDAVAAVSMGIAMRKHMKVLRQQWR 100 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH---HTCEEEEEETTEEEEEESSSSCS----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH---cCCEEEeeeCCEEEEEECCCccc----ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999 99999999999999999999831 23789999999999999999988753
Q ss_pred ---CCCceeEEEee--eceEEEEe
Q psy9434 81 ---SFNHFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 81 ---~~~~~~iRIGi--GpvvaGVV 99 (100)
...++++|||| |||++|+|
T Consensus 101 ~~~~~~~l~~riGi~~G~v~~g~v 124 (198)
T 3r5g_A 101 AQGITKPLEIRMGINTGYCTVGNF 124 (198)
T ss_dssp TTTCCSCCEEEEEEEEEEEEEEEE
T ss_pred hcCCCCceEEEEEEEEEEEEEEEe
Confidence 13579999999 99999986
No 10
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Probab=99.70 E-value=6.5e-17 Score=114.56 Aligned_cols=80 Identities=23% Similarity=0.242 Sum_probs=67.5
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhc---
Q psy9434 4 NQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKH--- 80 (100)
Q Consensus 4 ~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~--- 80 (100)
+++++++||++|+.||+++.+ |+++++||+||+|||++|.|. +++++|++|++.+.+.++.
T Consensus 31 ~~~~~~~l~~~~~~~~~~i~~---~~G~v~k~~GD~~ma~fg~p~-------------~A~~~Al~i~~~l~~~~w~~~~ 94 (235)
T 1fx2_A 31 PDLMPDAVAAHHRMVRSLIGR---YKCYEVKTVGDSFMIASKSPF-------------AAVQLAQELQLCFLHHDWGTNA 94 (235)
T ss_dssp TTTHHHHHHHHHHHHHHHHHH---TTCEEEEEETTEEEEEESCHH-------------HHHHHHHHHHHHHHHSCCSCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---cCCEEEEEcCCeEEEEeCCHH-------------HHHHHHHHHHHHHHhCCCchhH
Confidence 567889999999999999999 999999999999999999865 3678889998887553321
Q ss_pred ---------------------------------CCCceeEEEee--eceEEEEe
Q psy9434 81 ---------------------------------SFNHFFLRVGS--GPFLIFQV 99 (100)
Q Consensus 81 ---------------------------------~~~~~~iRIGi--GpvvaGVV 99 (100)
...++++|||| |||++|++
T Consensus 95 l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~riGIh~G~v~~G~~ 148 (235)
T 1fx2_A 95 LDDSYREFEEQRAEGECEYTPPTAHMDPEVYSRLWNGLRVRVGIHTGLCDIRHD 148 (235)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCSSTTSCHHHHHHHCCSCCEEEEEEEECCEEEEC
T ss_pred hhhhhhhhhhhccccccccCccccccccccccccccCcEEEEEEEeeEEEEEec
Confidence 01469999999 99999986
No 11
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=99.69 E-value=5.7e-17 Score=124.56 Aligned_cols=74 Identities=22% Similarity=0.153 Sum_probs=65.0
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcCCC
Q psy9434 4 NQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHSFN 83 (100)
Q Consensus 4 ~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~~~ 83 (100)
+++++++||++|+.||.++. |+++|+|||||+|||++|+|. +++++|++|++.++..+ .
T Consensus 235 p~evv~lLn~~~~~~~~i~~----~~g~~iKtiGDa~mavfg~p~-------------~a~~~Al~m~~~l~~~~----~ 293 (407)
T 1y10_A 235 AEELGHLAGRLAGLARDLTA----PPVWFIKTIGDAVMLVCPDPA-------------PLLDTVLKLVEVVDTDN----N 293 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHCC----TTCEEEEEETTEEEEEESSHH-------------HHHHHHHHHHHHHHTCT----T
T ss_pred HHHHHHHHHHHHHHHHHHHH----cCcEEEEEecceEEEEECCHH-------------HHHHHHHHHHHHHHHhC----C
Confidence 67889999999999998874 689999999999999999765 37899999999888743 4
Q ss_pred ceeEEEee--eceEEEE
Q psy9434 84 HFFLRVGS--GPFLIFQ 98 (100)
Q Consensus 84 ~~~iRIGi--GpvvaGV 98 (100)
++++|||| |||++|+
T Consensus 294 ~l~iRIGIhtG~Vv~Gv 310 (407)
T 1y10_A 294 FPRLRAGVASGMAVSRA 310 (407)
T ss_dssp SCCEEEEEEEEEEEEET
T ss_pred CceEEEEEEEEEEEEec
Confidence 68999999 9999984
No 12
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*
Probab=99.64 E-value=2.7e-16 Score=108.53 Aligned_cols=73 Identities=14% Similarity=0.148 Sum_probs=66.4
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcCCC
Q psy9434 4 NQKNSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHSFN 83 (100)
Q Consensus 4 ~~~~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~~~ 83 (100)
+++++++||++|+.|++++.+ |+++++||+||+|||++|.|. +++++|++|++.+++++
T Consensus 37 ~~~~~~~l~~~~~~~~~~i~~---~gG~v~k~~GD~~ma~f~~p~-------------~A~~~Al~~~~~l~~~~----- 95 (184)
T 1ybt_A 37 DDRWRDLLDNHDTIVCHEIQR---FGGREVNTAGDGFVATFTSPS-------------AAIACADDIVDAVAALG----- 95 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---TTCEECCCSSSSEEEEESCHH-------------HHHHHHHHHHHHHHTTT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHH---cCCEEEeEeCCEEEEEeCCHH-------------HHHHHHHHHHHHHHhcC-----
Confidence 567889999999999999999 999999999999999999653 57899999999998764
Q ss_pred ceeEEEee--eceEEEE
Q psy9434 84 HFFLRVGS--GPFLIFQ 98 (100)
Q Consensus 84 ~~~iRIGi--GpvvaGV 98 (100)
+++|||| |+|++|.
T Consensus 96 -l~~riGi~~G~v~~g~ 111 (184)
T 1ybt_A 96 -IEVRIGIHAGEVEVRD 111 (184)
T ss_dssp -CCEEEEEEEEEEEEEE
T ss_pred -CcEEEEEEEeEEEEEe
Confidence 9999999 9999994
No 13
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=99.62 E-value=1.4e-15 Score=104.61 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHH-HHHHhcCCCcCCeEEEeeeCCEEEEeeCCCCCCCCCCCchHHHHHHHHhHHHHHHHHHHhhhcCC-
Q psy9434 5 QKNSDTVEPRLVD-FDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHSF- 82 (100)
Q Consensus 5 ~~~v~lLn~lf~~-FD~l~~~~~~~~v~KiktiGd~yma~~Gl~~~~~~~~~~~~h~~~~~~~al~m~~~~~~~~~~~~- 82 (100)
.+.+..||++|.. |++++.+ |+++++|++||+|||++|.| .+++++|++|++.+++++....
T Consensus 27 ~~~~~~l~~~~~~~~~~~i~~---~~G~v~k~~GD~~~a~f~~~-------------~~A~~~Al~i~~~l~~~~~~~~~ 90 (189)
T 3mr7_A 27 TDVLNRQKLYRRELIDPAIAQ---AGGQIVKTTGDGMLARFDTA-------------QAALRCALEIQQAMQQREEDTPR 90 (189)
T ss_dssp HHHHHHHHHHHHHTHHHHHHH---TTCEEEEEETTEEEEEESSH-------------HHHHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHH---cCCEEEEEeCCEEEEEeCCH-------------HHHHHHHHHHHHHHHHHhhhccc
Confidence 4567899999998 9999999 99999999999999999843 4789999999999999987543
Q ss_pred -CceeEEEee--eceEEE
Q psy9434 83 -NHFFLRVGS--GPFLIF 97 (100)
Q Consensus 83 -~~~~iRIGi--GpvvaG 97 (100)
.++++|||| |||++|
T Consensus 91 ~~~l~~riGi~~G~v~~g 108 (189)
T 3mr7_A 91 KERIQYRIGINIGDIVLE 108 (189)
T ss_dssp GGCCCEEEEEEEEEEEEC
T ss_pred CCceeEEEEEEEEEEEEE
Confidence 479999999 999987
No 14
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=55.77 E-value=5.9 Score=25.45 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHHH
Q psy9434 1 MKANQKNSDTVEPRLVD 17 (100)
Q Consensus 1 ~~~~~~~v~lLn~lf~~ 17 (100)
||.++++++.||+.++.
T Consensus 1 Mk~~~kvi~~LN~~l~~ 17 (159)
T 4am5_A 1 MKGDQKVIEYLNRGLRS 17 (159)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999975543
No 15
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=44.30 E-value=22 Score=24.29 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 7 NSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
+.+=+..++..|..++.+ +++.+|.++|+.|
T Consensus 119 l~~Gv~~~~~~l~~~L~~---~Gv~~i~~~G~~F 149 (197)
T 1dkg_A 119 MVEDIELTLKSMLDVVRK---FGVEVIAETNVPL 149 (197)
T ss_dssp HHHHHHHHHHHHHHHHTT---TTEEEECCCSSBC
T ss_pred HHHHHHHHHHHHHHHHHH---CCCEEeCCCCCCC
Confidence 445677889999999999 9999999999844
No 16
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=42.47 E-value=91 Score=22.29 Aligned_cols=35 Identities=20% Similarity=0.050 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEEEEeeC
Q psy9434 8 SDTVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAASG 45 (100)
Q Consensus 8 v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~yma~~G 45 (100)
.....+++...-+.+.+ ++..-...=||-||+.+.
T Consensus 156 ~~~~l~l~~~Ll~y~~~---igG~lf~iGgdny~iftt 190 (268)
T 2qv6_A 156 YLNVNKVKLALMEELLK---YNALLFFIGGDNFMAPSN 190 (268)
T ss_dssp HHHHHHHHHHHHHHHHT---TTCCCEEEETTEEEEECT
T ss_pred HHHHHHHHHHHHHHHHH---hCCEEEEECCCEEEEEeC
Confidence 34455666666667777 777766677888999983
No 17
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=33.37 E-value=21 Score=24.05 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 7 NSDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
..+=+..++..|..++.+ +++.+|.+.|+.|
T Consensus 96 l~~Gv~m~~~~l~~~L~k---~Gv~~i~~~Ge~F 126 (177)
T 3a6m_A 96 IRQGVRAIRDGFFRILAG---LGVEEVPGEGEAF 126 (177)
T ss_dssp HHHHHHHHHHHHHHHHHH---TTCEECCCTTSBC
T ss_pred HHHHHHHHHHHHHHHHHH---CCCEEeCCCCCCC
Confidence 345567788999999999 9999999999843
No 18
>1n6z_A Hypothetical 12.3 kDa protein in ZDS2-URA5 intergenic region; structural proteomics, structural genomics, OCSP, NESG; NMR {Saccharomyces cerevisiae} SCOP: d.263.1.1
Probab=27.76 E-value=42 Score=20.68 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy9434 7 NSDTVEPRLVDFDELLS 23 (100)
Q Consensus 7 ~v~lLn~lf~~FD~l~~ 23 (100)
.+..||..|..||+-+.
T Consensus 49 ~~d~lN~~FDkFDE~I~ 65 (105)
T 1n6z_A 49 ELDELNTWFDKFDAEIC 65 (105)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcccee
Confidence 47899999999998776
No 19
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=27.37 E-value=70 Score=21.04 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=15.2
Q ss_pred CCeEEEeeeCC-EEEEeeCCCC
Q psy9434 28 RSIEKIKTVGA-CYMAASGLDP 48 (100)
Q Consensus 28 ~~v~KiktiGd-~yma~~Gl~~ 48 (100)
....||..|+| .+++.+|+..
T Consensus 38 ~~~~Ki~~i~~~i~~~~aG~~a 59 (205)
T 1ryp_H 38 RVTDKLTRVHDKIWCCRSGSAA 59 (205)
T ss_dssp SSCCCEEEEETTEEEEEEEBHH
T ss_pred CCcCceEEcCCCEEEEccCCHH
Confidence 34567777776 6889999865
No 20
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1
Probab=25.35 E-value=40 Score=21.11 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=11.8
Q ss_pred CCccchHHHHHHHHHH
Q psy9434 1 MKANQKNSDTVEPRLV 16 (100)
Q Consensus 1 ~~~~~~~v~lLn~lf~ 16 (100)
|+.++++++.||+.+.
T Consensus 1 m~~~~~~~~~Ln~~la 16 (161)
T 3gvy_A 1 MQGDAKVIEYLNAALR 16 (161)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 7777888888886544
No 21
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A
Probab=24.15 E-value=43 Score=20.75 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=11.5
Q ss_pred CCccchHHHHHHHHHH
Q psy9434 1 MKANQKNSDTVEPRLV 16 (100)
Q Consensus 1 ~~~~~~~v~lLn~lf~ 16 (100)
|+-++++++.||+.+.
T Consensus 1 M~~~~~~~~~Ln~~la 16 (154)
T 3r2k_A 1 MQGHPEVIDYLNTLLT 16 (154)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 7777788888886444
No 22
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=23.62 E-value=45 Score=20.80 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=11.0
Q ss_pred CCccchHHHHHHHHHH
Q psy9434 1 MKANQKNSDTVEPRLV 16 (100)
Q Consensus 1 ~~~~~~~v~lLn~lf~ 16 (100)
|+.++++++.||+.+.
T Consensus 3 m~~~~~~~~~Ln~~la 18 (161)
T 3uoi_A 3 MQGDPDVLRLLNEQLT 18 (161)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5667777888886444
No 23
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=23.47 E-value=49 Score=18.90 Aligned_cols=12 Identities=8% Similarity=0.332 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHH
Q psy9434 9 DTVEPRLVDFDE 20 (100)
Q Consensus 9 ~lLn~lf~~FD~ 20 (100)
.+|+.||..|++
T Consensus 8 ~l~d~lF~~Fek 19 (69)
T 1bby_A 8 HVLDMLFSAFEK 19 (69)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 578888888875
No 24
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=23.01 E-value=52 Score=19.86 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhcC
Q psy9434 9 DTVEPRLVDFDELLSE 24 (100)
Q Consensus 9 ~lLn~lf~~FD~l~~~ 24 (100)
++|.++|..+|++.+.
T Consensus 60 rllsrlfeemdelrea 75 (114)
T 2p06_A 60 RLLSRLFEEMDELREA 75 (114)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6899999999998764
No 25
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=21.30 E-value=71 Score=17.75 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q psy9434 6 KNSDTVEPRLVDFDELLSE 24 (100)
Q Consensus 6 ~~v~lLn~lf~~FD~l~~~ 24 (100)
+.+.-||++|..+..++..
T Consensus 13 ~~i~eL~~iF~dla~lV~e 31 (71)
T 2nps_B 13 ADILDVNQIFKDLAMMIHD 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577899999999988864
No 26
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=20.98 E-value=75 Score=17.40 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q psy9434 6 KNSDTVEPRLVDFDELLSE 24 (100)
Q Consensus 6 ~~v~lLn~lf~~FD~l~~~ 24 (100)
+.+.-||++|..+..++..
T Consensus 16 ~~i~eL~~iF~dla~lV~e 34 (65)
T 1gl2_B 16 ADIMDINEIFKDLGMMIHE 34 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577899999999888764
No 27
>2oct_A Cystatin B; stefin, amyloid, domain-swapping, hand shaking, PR isomerization, protein binding; 1.40A {Homo sapiens} PDB: 1stf_I*
Probab=20.88 E-value=1.4e+02 Score=17.61 Aligned_cols=17 Identities=6% Similarity=-0.136 Sum_probs=12.2
Q ss_pred CchHHHHHHHHhHHHHH
Q psy9434 55 DELDHVCALIDFSLAIK 71 (100)
Q Consensus 55 ~~~~h~~~~~~~al~m~ 71 (100)
+...++..++++|..-.
T Consensus 11 ~~~~evq~i~~~a~~~~ 27 (98)
T 2oct_A 11 PATAETQHIADQVRSQL 27 (98)
T ss_dssp ECCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 34568888999987643
No 28
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=20.18 E-value=33 Score=23.86 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCeEEEeeeCCEE
Q psy9434 8 SDTVEPRLVDFDELLSEPRFRSIEKIKTVGACY 40 (100)
Q Consensus 8 v~lLn~lf~~FD~l~~~~~~~~v~KiktiGd~y 40 (100)
..=+..++..|..++.+ +++.+|...|+.|
T Consensus 139 ~eGvemi~k~l~~~L~k---~Gv~~I~~~Ge~F 168 (213)
T 4ani_A 139 LQGMEMVYRSLVDALKK---EGVEAIEAVGKPF 168 (213)
T ss_dssp HHHHHHHHHHHHHHHHH---TTEECCCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHH---CCCEEeCCCCCCC
Confidence 34466788899999999 9999999999843
Done!