RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9434
(100 letters)
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 65.7 bits (161), Expect = 7e-15
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 17 DFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQ 76
FDELL + + K+KT+G YMAASGL H L + +L + + +
Sbjct: 41 RFDELLDKHG---VYKVKTIGDAYMAASGL------PEPSPAHAQTLAEMALDMLEAIKS 91
Query: 77 VNKHSFNHFFLRVG--SGPFLI 96
VN HSF +RVG +GP +
Sbjct: 92 VNIHSFEGLRVRVGIHTGPVVA 113
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be
divided into two major groups; the mononucleotidyl
cyclases (MNC's) and the diguanylate cyclases (DGC's).
The MNC's, which include the adenylate cyclases (AC's)
and the guanylate cyclases (GC's), have a conserved
cyclase homology domain (CHD), while the DGC's have a
conserved GGDEF domain, named after a conserved motif
within this subgroup. Their products, cyclic guanylyl
and adenylyl nucleotides, are second messengers that
play important roles in eukaryotic signal transduction
and prokaryotic sensory pathways.
Length = 133
Score = 51.2 bits (123), Expect = 1e-09
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 17 DFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQ 76
FD L+ KIKT+G +M SGLD H A + F+ +++ +
Sbjct: 34 RFDSLIRRS---GDLKIKTIGDEFMVVSGLD-----------HPAAAVAFAEDMREAVSA 79
Query: 77 VNKHSFNHFFLRVG--SGP 93
+N+ N +R+G +GP
Sbjct: 80 LNQSEGNPVRVRIGIHTGP 98
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 51.5 bits (124), Expect = 2e-09
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 18 FDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQV 77
FD+++ K+KT+G YM ASGL + +DH + D +L + + L V
Sbjct: 70 FDQIIDR---HGGYKVKTIGDAYMVASGLPEE-----ALVDHAELIADEALDMVEELKTV 121
Query: 78 -NKHSFNHFFLRVG--SGP 93
+H +R+G +GP
Sbjct: 122 LVQHREEGLRVRIGIHTGP 140
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic and
prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions to
bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 44.9 bits (107), Expect = 5e-07
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 17 DFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQ 76
FDE++ KT+G MA GL H DH + +L +++ L +
Sbjct: 34 AFDEIIER---HGGTVDKTIGDAVMAVFGLPGAHE------DHAERAVRAALEMQEALAE 84
Query: 77 VNKHSFNHFFLRVGSG 92
+N LR+ G
Sbjct: 85 LNAEREGGPPLRLRIG 100
>gnl|CDD|165514 PHA03256, PHA03256, BDLF3; Provisional.
Length = 77
Score = 28.9 bits (64), Expect = 0.17
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 17 DFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFS 67
+F ELLS + + +TV Y+A GL + S + L+++C L+D +
Sbjct: 21 EFGELLS---WDPTDLPRTVARVYVAVGGLFEQEVSEVQRLENICTLLDLA 68
>gnl|CDD|241101 cd12657, RRM1_hnRNPM, RNA recognition motif 1 in vertebrate
heterogeneous nuclear ribonucleoprotein M (hnRNP M).
This subgroup corresponds to the RRM1 of hnRNP M, a
pre-mRNA binding protein that may play an important
role in the pre-mRNA processing. It also preferentially
binds to poly(G) and poly(U) RNA homopolymers.
Moreover, hnRNP M is able to interact with early
spliceosomes, further influencing splicing patterns of
specific pre-mRNAs. hnRNP M functions as the receptor
of carcinoembryonic antigen (CEA) that contains the
penta-peptide sequence PELPK signaling motif. In
addition, hnRNP M and another splicing factor Nova-1
work together as dopamine D2 receptor (D2R)
pre-mRNA-binding proteins. They regulate alternative
splicing of D2R pre-mRNA in an antagonistic manner.
hnRNP M contains three RNA recognition motifs (RRMs),
also termed RBDs (RNA binding domains) or RNPs
(ribonucleoprotein domains), and an unusual
hexapeptide-repeat region rich in methionine and
arginine residues (MR repeat motif). .
Length = 76
Score = 26.1 bits (57), Expect = 1.8
Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 61 CALIDFSL--AIKQCLDQVNKHSFNHFFLRV 89
CA+++F + ++K+ ++ +NKH N L+V
Sbjct: 43 CAVVEFKMEESMKKAVEVLNKHVLNGRPLKV 73
>gnl|CDD|200462 cd11323, AmyAc_AGS, Alpha amylase catalytic domain found in Alpha
1,3-glucan synthase (also called uridine
diphosphoglucose-1,3-alpha-glucan glucosyltransferase
and 1,3-alpha-D-glucan synthase). Alpha 1,3-glucan
synthase (AGS, EC 2.4.1.183) is an enzyme that catalyzes
the reversible chemical reaction of UDP-glucose and
[alpha-D-glucosyl-(1-3)]n to form UDP and
[alpha-D-glucosyl-(1-3)]n+1. AGS is a component of
fungal cell walls. The cell wall of filamentous fungi is
composed of 10-15% chitin and 10-35% alpha-1,3-glucan.
AGS is triggered in fungi as a response to cell wall
stress and elongates the glucan chains in cell wall
synthesis. This group includes proteins from Ascomycetes
and Basidomycetes. The Alpha-amylase family comprises
the largest family of glycoside hydrolases (GH), with
the majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 569
Score = 26.5 bits (59), Expect = 2.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 60 VCALIDFSLAIKQCLDQVNKHSF 82
V L ++S A+++C +V K +F
Sbjct: 311 VDFLGEWSAAVRECARKVGKDNF 333
>gnl|CDD|145021 pfam01658, Inos-1-P_synth, Myo-inositol-1-phosphate synthase.
This is a family of myo-inositol-1-phosphate synthases.
Inositol-1-phosphate catalyzes the conversion of
glucose-6- phosphate to inositol-1-phosphate, which is
then dephosphorylated to inositol. Inositol phosphates
play an important role in signal transduction.
Length = 108
Score = 25.6 bits (57), Expect = 3.7
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 17 DFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHH 51
D LL RF+S E K+ + D H
Sbjct: 33 DGLNLLEPERFKSKEISKSSVVDDILGYNYDVPDH 67
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 25.1 bits (56), Expect = 7.6
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 10 TVEPRLVDFDELLSEPRFRSIEKIKTVGACYMAA 43
TVE R V DE ++ + + AC AA
Sbjct: 274 TVEERPVSIDEWQAD---AASGEFTEAFACGTAA 304
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.419
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,061,796
Number of extensions: 420079
Number of successful extensions: 466
Number of sequences better than 10.0: 1
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 19
Length of query: 100
Length of database: 10,937,602
Length adjustment: 66
Effective length of query: 34
Effective length of database: 8,010,238
Effective search space: 272348092
Effective search space used: 272348092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)