RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9434
(100 letters)
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 97.3 bits (243), Expect = 7e-27
Identities = 40/84 (47%), Positives = 54/84 (64%), Gaps = 7/84 (8%)
Query: 17 DFDELLSEPRFRSIEKIKTVGACYMAASGLDPKH-HSHLDEL----DHVCALIDFSLAIK 71
DFD+LLS+P+F +EKIKT+G+ YMAA+GL H E H+ +++F+ A+
Sbjct: 51 DFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALV 110
Query: 72 QCLDQVNKHSFNHFFLRVG--SGP 93
LD +NKHSFN F LRVG GP
Sbjct: 111 GKLDAINKHSFNDFKLRVGINHGP 134
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 58.5 bits (142), Expect = 3e-12
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 18 FDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQV 77
FD + + + K++T+G YM + DH L++F+L + + +V
Sbjct: 43 FDAAIE--EYPQLYKVETIGDAYMVVCNV-TVPCD-----DHADVLLEFALRMHEEASRV 94
Query: 78 NKHSFNHFFLRVG--SGP 93
+RVG SGP
Sbjct: 95 ASSLGEPVRIRVGMHSGP 112
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 58.5 bits (142), Expect = 4e-12
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 18 FDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQV 77
FD L + + K++TVG YM SGL P+ H ++ +L + + QV
Sbjct: 50 FDTLTDSRKNPFVYKVETVGDKYMTVSGL-PEPCI-----HHARSICHLALDMMEIAGQV 103
Query: 78 NKHSFNHFFLRVG--SGP 93
+ +G +G
Sbjct: 104 QVDG-ESVQITIGIHTGE 120
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 58.0 bits (141), Expect = 4e-12
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 18 FDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQV 77
FDEL+ + +EKI+ G YM SG+ P+ DH AL DF+L + Q+
Sbjct: 44 FDELVDQ---HGLEKIEVSGDSYMVVSGV-PRPRP-----DHTQALADFALDMTNVAAQL 94
Query: 78 NKHSFNHFFLRVG--SGP 93
N LRVG +GP
Sbjct: 95 KDPRGNPVPLRVGLATGP 112
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 55.0 bits (133), Expect = 8e-11
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 18 FDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQV 77
FD+ E + K++T+G Y A GL K H + +L + + D+V
Sbjct: 48 FDQQCGE---LDVYKVETIGDAYCVAGGL-HKESD-----THAVQIALMALKMMELSDEV 98
Query: 78 NKHSFNHFFLRVG--SGP 93
+R+G SG
Sbjct: 99 MSPHGEPIKMRIGLHSGS 116
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 52.7 bits (127), Expect = 7e-10
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 18 FDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQV 77
FD+L +E +IK +G CY SGL P+ + DH ++ + + + + V
Sbjct: 68 FDKLAAE---NHCLRIKILGDCYYCVSGL-PEARA-----DHAHCCVEMGMDMIEAISLV 118
Query: 78 NKHSFNHFFLRVG--SGP 93
+ + + +RVG SG
Sbjct: 119 REMTGVNVNMRVGIHSGR 136
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.016
Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 38/94 (40%)
Query: 38 ACYMAA-SGLDPKH--------HSHLDELDHVC-----------------ALIDFSLAI- 70
M + S L + +SHL V +L +L +
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 71 KQC----LDQVN------KHSFNHFFLRVGSGPF 94
K LDQ K F++ FL V S PF
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVAS-PF 427
Score = 26.9 bits (59), Expect = 1.4
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 20/77 (25%)
Query: 17 DFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDE--LDHVCALIDFSLAIKQCL 74
F+++L EP T G A+ +P + L L +V +L++ S + Q
Sbjct: 36 QFNKILPEP---------TEGF----AADDEPTTPAELVGKFLGYVSSLVEPS-KVGQ-F 80
Query: 75 DQVNKHSFNHF---FLR 88
DQV F +L
Sbjct: 81 DQVLNLCLTEFENCYLE 97
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 31.5 bits (71), Expect = 0.028
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 19/65 (29%)
Query: 31 EKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIKQCLDQVNKHSFNHFFLRVG 90
IKT+G M DP +D L + + +D N N LR G
Sbjct: 258 WFIKTIGDAVMLVCP-DPAPL------------LDTVLKLVEVVDTDN----NFPRLRAG 300
Query: 91 --SGP 93
SG
Sbjct: 301 VASGM 305
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN
joint center for structural genomics, JCSG, protein
structu initiative; HET: MSE; 1.75A {Silicibacter
pomeroyi dss-3}
Length = 344
Score = 30.6 bits (70), Expect = 0.062
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 8 SDTVEPRLVDFDELLSEPRFRSIEKIKTVGAC 39
++ D + + R R + TV A
Sbjct: 21 QRLLDHGAQDVARVAAVLRLRDPSFVATV-AR 51
>3knz_A Putative sugar binding protein; structural genomics, joint C
structural genomics, JCSG, protein structure
initiative; 2.50A {Salmonella enterica subsp}
Length = 366
Score = 27.9 bits (63), Expect = 0.54
Identities = 3/32 (9%), Positives = 7/32 (21%), Gaps = 1/32 (3%)
Query: 8 SDTVEPRLVDFDELLSEPRFRSIEKIKTVGAC 39
+ + D R + +I
Sbjct: 28 LEMLTQTREDLWRAAQALTERGVTRIILT-GS 58
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 0.83
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 6/32 (18%)
Query: 50 HHSHLD----ELDHVCA--LIDFSLAIKQCLD 75
HH H+D E + L F A D
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFD 34
>3hba_A Putative phosphosugar isomerase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella
denitrificans OS217}
Length = 334
Score = 26.7 bits (60), Expect = 1.2
Identities = 4/32 (12%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 8 SDTVEPRLVDFDELLSEPRFRSIEKIKTVGAC 39
++ + + L S R + + V
Sbjct: 20 AEQLLANDAITESLGSVLREFKPKFVMIV-GR 50
>1dj2_A Adenylosuccinate synthetase; GDP, ligase; HET: GDP; 2.90A
{Arabidopsis thaliana} SCOP: c.37.1.10 PDB: 1dj3_A*
Length = 443
Score = 24.8 bits (55), Expect = 5.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 88 RVGSGPF 94
RVGSGPF
Sbjct: 290 RVGSGPF 296
>3r7t_A Adenylosuccinate synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
fold, cytosol; HET: CIT PGE; 2.30A {Campylobacter
jejuni}
Length = 419
Score = 24.7 bits (55), Expect = 5.9
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 88 RVGSGPF 94
RVG+G F
Sbjct: 271 RVGNGAF 277
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A
{Plasmodium falciparum} SCOP: c.37.1.10
Length = 442
Score = 24.8 bits (55), Expect = 6.1
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 88 RVGSGPF 94
RVG GPF
Sbjct: 280 RVGCGPF 286
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis,
metal- binding, purine metabolism, nucleotide-binding,
GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens}
PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A*
1mf0_A* 1mf1_A* 2dgn_A*
Length = 459
Score = 24.8 bits (55), Expect = 6.3
Identities = 5/7 (71%), Positives = 5/7 (71%)
Query: 88 RVGSGPF 94
RVG G F
Sbjct: 306 RVGIGAF 312
>3ue9_A Adenylosuccinate synthetase; ssgcid, ligase, ADSS, BTH_I2245,
IMP-aspartate ligase, struc genomics; 1.95A
{Burkholderia thailandensis}
Length = 452
Score = 24.8 bits (55), Expect = 6.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 88 RVGSGPF 94
RVGSGPF
Sbjct: 286 RVGSGPF 292
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A
{Aneurinibacillus SP} PDB: 2ek9_A*
Length = 421
Score = 24.7 bits (53), Expect = 6.4
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 44 SGLDPKHHSHLDELDHV 60
+ ++P +H+ D LD +
Sbjct: 364 APVEPWYHTPNDTLDKI 380
>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence
associated factor, PURA, purine ribonucleotide
biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92}
PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A*
1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A*
1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A*
...
Length = 432
Score = 24.7 bits (55), Expect = 6.9
Identities = 6/7 (85%), Positives = 7/7 (100%)
Query: 88 RVGSGPF 94
RVG+GPF
Sbjct: 273 RVGAGPF 279
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation,
ATPase, transmembrane transport, helicase-like motor
domain; HET: ADP; 2.60A {Mycobacterium tuberculosis}
SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB:
1nl3_A
Length = 922
Score = 24.5 bits (54), Expect = 7.1
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 14 RLVDFDELLSEPRFRSIEKIKTVGACYMAASGLDPKHHSHLDELDH 59
R + +E+ E R +E+ + + +D K HL E+D+
Sbjct: 780 REAELEEIAGEGAMRQLER-------NVLLNVIDRKWREHLYEMDY 818
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 24.4 bits (53), Expect = 8.6
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 31 EKIKTVGACYMAASGLDPKHHSHLDELDHVCALIDFSLAIK 71
++KTVG +M AS P + L L
Sbjct: 55 YEVKTVGDSFMIASK-SP-----FAAVQLAQELQLCFLHHD 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.419
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,561,745
Number of extensions: 80957
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 27
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)