BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9435
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FBW|C Chain C, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2FBW|P Chain P, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2WQY|C Chain C, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
pdb|2WQY|P Chain P, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
Length = 141
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 48 RNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALT 83
+N + RPLSPH++IYK + +SITHRGTGVAL+
Sbjct: 15 KNTKSSRPLSPHISIYKWSLPMAMSITHRGTGVALS 50
>pdb|2H88|C Chain C, Avian Mitochondrial Respiratory Complex Ii At 1.8
Angstrom Resolution
pdb|2H88|P Chain P, Avian Mitochondrial Respiratory Complex Ii At 1.8
Angstrom Resolution
pdb|2H89|C Chain C, Avian Respiratory Complex Ii With Malonate Bound
Length = 140
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 48 RNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALT 83
+N + RPLSPH++IYK + +SITHRGTGVAL+
Sbjct: 15 KNTKSSRPLSPHISIYKWSLPMAMSITHRGTGVALS 50
>pdb|1YQ3|C Chain C, Avian Respiratory Complex Ii With Oxaloacetate And
Ubiquinone
pdb|1YQ4|C Chain C, Avian Respiratory Complex Ii With 3-Nitropropionate And
Ubiquinone
Length = 141
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 48 RNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALT 83
+N + RPLSPH++IYK + +SITHRGTGVAL+
Sbjct: 15 KNTKSSRPLSPHISIYKWSLPMAMSITHRGTGVALS 50
>pdb|1ZOY|C Chain C, Crystal Structure Of Mitochondrial Respiratory Complex
Ii From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|C Chain C, Crystal Structure Of Mitochondrial Respiratory Complex
Ii Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3ABV|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
pdb|3SFD|C Chain C, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And
Pentachlorophenol
pdb|3SFE|C Chain C, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 140
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 42 KEGHAVRNERLG--RPLSPHLTIYKLQITSVLSITHRGTGVALTA 84
+E N+ LG RPLSPH+TIY+ + +SI HRGTG+AL+A
Sbjct: 7 EEMERFWNKNLGSNRPLSPHITIYRWSLPMAMSICHRGTGIALSA 51
>pdb|3VR8|C Chain C, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|G Chain G, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|C Chain C, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|G Chain G, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 188
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 45 HAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTAYALGLAGVGLT 95
+ +R L RP++PHLTIYK Q+T ++S HR TG A+ A L + GVG +
Sbjct: 45 YLMRQRALKRPIAPHLTIYKPQMTWMVSGLHRVTGCAM-AGTLLIGGVGFS 94
>pdb|2WU2|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
Length = 129
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 47 VRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTAYALGLAGVGLTTDINS 100
+RN + RP++ L + IT++ SI HR +GV +T A+G+ L T ++S
Sbjct: 2 IRNVKKQRPVNLDLQTIRFPITAIASILHRVSGV-ITFVAVGILLWLLGTSLSS 54
>pdb|1NEK|C Chain C, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Ubiquinone Bound
pdb|1NEN|C Chain C, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Dinitrophenol-17 Inhibitor Co-Crystallized At The
Ubiquinone Binding Site
pdb|2ACZ|C Chain C, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Atpenin A5 Inhibitor Co-Crystallized At The Ubiquinone
Binding Site
pdb|2WDQ|C Chain C, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|G Chain G, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|K Chain K, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDV|C Chain C, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|G Chain G, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|K Chain K, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDR|C Chain C, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|G Chain G, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|K Chain K, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WP9|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WS3|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WU5|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
Length = 129
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 47 VRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTAYALGLAGVGLTTDINS 100
+RN + RP++ L + IT++ SI HR +GV +T A+G+ L T ++S
Sbjct: 2 IRNVKKQRPVNLDLQTIRFPITAIASILHRVSGV-ITFVAVGILLWLLGTSLSS 54
>pdb|4HPP|A Chain A, Crystal Structure Of Novel Glutamine Synthase Homolog
Length = 443
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 14/84 (16%)
Query: 7 LSTLCNPIASSHLRLLPH----------IR----TITIKPVAAPTGVPSKEGHAVRNERL 52
L L P A+S+LRL PH +R + I PV + G P + + + +
Sbjct: 277 LCALTAPTAASYLRLKPHHWSAAYACLGLRNREAALRICPVVSVGGKPLGKQYNLEFRPM 336
Query: 53 GRPLSPHLTIYKLQITSVLSITHR 76
PHL + + I L I R
Sbjct: 337 DATTCPHLAMAAVLIAGRLGIERR 360
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,920,030
Number of Sequences: 62578
Number of extensions: 106063
Number of successful extensions: 246
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 8
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)