BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9435
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|D0VWV4|C560_PIG Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
OS=Sus scrofa GN=SDHC PE=1 SV=2
Length = 169
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 34 AAPTGVPSKEG-HAVRNERLG--RPLSPHLTIYKLQITSVLSITHRGTGVALTA 84
A P G +KE N+ LG RPLSPH+TIY+ + +SI HRGTG+AL+A
Sbjct: 27 AVPLGTTAKEEMERFWNKNLGSNRPLSPHITIYRWSLPMAMSICHRGTGIALSA 80
>sp|Q9CZB0|C560_MOUSE Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
OS=Mus musculus GN=Sdhc PE=2 SV=1
Length = 169
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 34 AAPTGVPSKEG---HAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTA 84
AAP G +KE +N RPLSPHLTIYK + LS+ HRG+G+AL+
Sbjct: 27 AAPLGTTAKEEMERFWKKNTSSNRPLSPHLTIYKWSLPMALSVCHRGSGIALSG 80
>sp|P80481|C560_RECAM Succinate dehydrogenase cytochrome b560 subunit OS=Reclinomonas
americana GN=SDH3 PE=3 SV=1
Length = 144
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 30/39 (76%), Gaps = 2/39 (5%)
Query: 47 VRNERLGRPLSPHLTIYKLQITSVLSITHRGTG--VALT 83
+ N + RP+SPHLTIYKLQIT+ LSI HR TG +ALT
Sbjct: 14 IINMNINRPISPHLTIYKLQITNTLSIFHRITGGVLALT 52
>sp|Q4UKC1|DHSC_RICFE Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia
felis (strain ATCC VR-1525 / URRWXCal2) GN=sdhC PE=3
SV=1
Length = 124
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 41 SKEGHAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVAL 82
+K + N+R P SPHL+IYKLQI+S LSI HR TGVAL
Sbjct: 2 TKTKQEIYNKR---PTSPHLSIYKLQISSTLSILHRMTGVAL 40
>sp|Q99643|C560_HUMAN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
OS=Homo sapiens GN=SDHC PE=1 SV=1
Length = 169
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 34 AAPTGVPSKEG-HAVRNERLG--RPLSPHLTIYKLQITSVLSITHRGTGVALTA 84
A P G +KE N+ +G RPLSPH+TIY + +SI HRGTG+AL+A
Sbjct: 27 AVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSA 80
>sp|P70097|C560_CRIGR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
OS=Cricetulus griseus GN=SDHC PE=2 SV=1
Length = 169
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 34 AAPTGVPSKEG---HAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTA 84
A P G +KE +N RP+SPHLTIY+ + V+SI HRGTGVAL+
Sbjct: 27 AVPLGTTAKEEMERFWNKNTSSKRPVSPHLTIYRWSLPMVMSICHRGTGVALSG 80
>sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
OS=Bos taurus GN=SDHC PE=1 SV=2
Length = 169
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 34 AAPTGVPSKEG---HAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTA 84
A P G +KE +N L RPLSPH++IY + +SI HRGTG+AL+A
Sbjct: 27 AVPLGTTAKEEMERFWSKNTTLNRPLSPHISIYGWSLPMAMSICHRGTGIALSA 80
>sp|Q8T2T5|C560_DICDI Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
OS=Dictyostelium discoideum GN=sdhC PE=3 SV=1
Length = 192
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 54 RPLSPHLTIYKLQITSVLSITHRGTGVALTAYALGLAGVGL 94
+P SPHLTIYK + +V+SI HR TG+ L GLAGV L
Sbjct: 71 QPTSPHLTIYKFPLPAVMSIMHRATGICLALGITGLAGVTL 111
>sp|Q1RHB5|DHSC_RICBR Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia
bellii (strain RML369-C) GN=sdhC PE=3 SV=1
Length = 125
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 41 SKEGHAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVAL 82
+K + N+R P SPHLTIYK QI+S LSI HR TGVAL
Sbjct: 2 TKTKQEIYNKR---PTSPHLTIYKPQISSTLSILHRMTGVAL 40
>sp|P41085|DHSC_RICPR Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia
prowazekii (strain Madrid E) GN=sdhC PE=3 SV=1
Length = 124
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 24/29 (82%)
Query: 54 RPLSPHLTIYKLQITSVLSITHRGTGVAL 82
RP SPHLTIYK QI+S LSI HR TGVAL
Sbjct: 12 RPTSPHLTIYKPQISSTLSILHRMTGVAL 40
>sp|Q68XP1|DHSC_RICTY Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia
typhi (strain ATCC VR-144 / Wilmington) GN=sdhC PE=3
SV=1
Length = 124
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 24/29 (82%)
Query: 54 RPLSPHLTIYKLQITSVLSITHRGTGVAL 82
RP SPHLTIYK QI+S LSI HR TGVAL
Sbjct: 12 RPTSPHLTIYKPQISSTLSILHRMTGVAL 40
>sp|Q92J99|DHSC_RICCN Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=sdhC PE=3
SV=1
Length = 124
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 41 SKEGHAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVAL 82
+K + N+R P SPHLTIYK QI+S LSI +R TGVAL
Sbjct: 2 TKTKQEIYNKR---PTSPHLTIYKPQISSTLSILYRMTGVAL 40
>sp|P35721|C560_MARPO Succinate dehydrogenase cytochrome b560 subunit OS=Marchantia
polymorpha GN=SDH3 PE=3 SV=1
Length = 137
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 25/37 (67%)
Query: 51 RLGRPLSPHLTIYKLQITSVLSITHRGTGVALTAYAL 87
++ RPLSPHLTIYK Q+TS SI HR +G L L
Sbjct: 2 KINRPLSPHLTIYKPQLTSTFSIFHRISGAFLATMVL 38
>sp|O74882|SDH3_SCHPO Succinate dehydrogenase cytochrome B subunit, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sdh3 PE=3 SV=1
Length = 180
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 25 IRTITIKPVAAPTGVPSKEGHAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVA--- 81
+R + + +A ++ + ++R+ RP SPHLTIY+ Q+T LS HR TG
Sbjct: 29 LRNVWRRSIATEHLTQTEANSRLASQRVHRPNSPHLTIYEPQLTWYLSSLHRITGCVVAG 88
Query: 82 -LTAYALG-----LAGVGLTTDINS----VVPTYL 106
L A+A+G LAG L T S VPT++
Sbjct: 89 TLYAFAMGYLVAPLAGYSLDTATISGLIQQVPTWI 123
>sp|P80478|C560_PORPU Succinate dehydrogenase cytochrome b560 subunit OS=Porphyra
purpurea GN=SDH3 PE=3 SV=1
Length = 125
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 51 RLGRPLSPHLTIYKLQITSVLSITHRGTGVAL 82
+ RP+SPHLTIY Q +S+ SI HR +GVA+
Sbjct: 3 NINRPISPHLTIYNTQKSSLFSIWHRISGVAM 34
>sp|Q04487|YM07_YEAST Putative succinate dehydrogenase [ubiquinone] cytochrome b subunit,
mitochondrial OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YMR118C PE=3 SV=1
Length = 196
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 41 SKEGHAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTAYALGLAGVGLTTDINS 100
+KE + ++R RP+SPHLT+Y+ +++ LS HR +GV L ALG +T + +
Sbjct: 60 NKEEELLVSQRKKRPISPHLTVYEPEMSWYLSSLHRISGVLL---ALGFYAFTITLGVTT 116
Query: 101 VV 102
++
Sbjct: 117 IM 118
>sp|P48935|C560_CYACA Succinate dehydrogenase cytochrome b560 subunit OS=Cyanidium
caldarium GN=SDH3 PE=3 SV=1
Length = 132
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 53 GRPLSPHLTIYKLQITSVLSITHRGTGVALTAYALGL 89
RPLSP++TIY Q TS+ SI HR +G+ L + L
Sbjct: 5 NRPLSPYVTIYSSQWTSISSIFHRLSGLYLVFFLFVL 41
>sp|P33421|SDH3_YEAST Succinate dehydrogenase [ubiquinone] cytochrome b subunit,
mitochondrial OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SDH3 PE=1 SV=1
Length = 198
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 30 IKPVAAP--TGVPSKEGHAVRNERLGRPLSPHLTIYKLQITSVLSITHR 76
+K VA+ T E + +R RP+SPHLTIY+ Q+T LS HR
Sbjct: 49 LKNVASEMNTKAAIAEEQILNKQRAKRPISPHLTIYQPQLTWYLSSLHR 97
>sp|P41955|C560_CAEBR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
OS=Caenorhabditis briggsae GN=mev-1 PE=2 SV=1
Length = 184
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 48 RNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTAYALGLAGVGL 94
+ + RP++PHLTIY+ Q+T +LS HR +G + L + G+G
Sbjct: 46 KQRDMKRPIAPHLTIYQPQLTWMLSGFHRISGCVMAGTLL-VGGLGF 91
>sp|P48934|C560_CHOCR Succinate dehydrogenase cytochrome b560 subunit OS=Chondrus
crispus GN=SDH3 PE=3 SV=1
Length = 127
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 53 GRPLSPHLTIYKLQITSVLSITHRGTGVAL 82
RP++PHL +Y Q++S+ SI HR +GV L
Sbjct: 9 NRPIAPHLLVYTPQLSSLFSIWHRISGVGL 38
>sp|P41956|C560_CAEEL Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
OS=Caenorhabditis elegans GN=mev-1 PE=2 SV=1
Length = 182
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 45 HAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTAYALGLAGVGL 94
+ ++ RP++PHLT+Y+ Q+T +LS HR +G + A L + G+G
Sbjct: 43 YLLKQRSKNRPIAPHLTVYQPQLTWMLSGFHRISGCVM-AGTLLVGGIGF 91
>sp|Q59659|DHSC_PARDE Succinate dehydrogenase cytochrome b556 subunit OS=Paracoccus
denitrificans GN=sdhC PE=3 SV=1
Length = 130
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 50 ERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTA 84
R RPLSPHL +Y+L + ++ SI R TG AL A
Sbjct: 5 NRGNRPLSPHLQVYRLPLAAITSIMTRITGHALVA 39
>sp|Q2TAF3|EMAL4_XENLA Echinoderm microtubule-associated protein-like 4 OS=Xenopus laevis
GN=eml4 PE=2 SV=1
Length = 927
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 27 TITIKPVAA-PTGVPSKEGHAVRNERLGRPLSPHLTIYKLQITSVLSITHRGT---GVAL 82
T +K +A P + G ++ GRPL PH+ ++ S L + GT GV
Sbjct: 249 TDCVKCIAVHPDKIRIATGQIAGVDKDGRPLQPHVRVWDSVSLSTLQVIGLGTFERGVGC 308
Query: 83 TAYALGLAGVGLT 95
A++ +GV L+
Sbjct: 309 LAFSKADSGVHLS 321
>sp|Q6DIP5|EMAL4_XENTR Echinoderm microtubule-associated protein-like 4 OS=Xenopus
tropicalis GN=eml4 PE=2 SV=1
Length = 928
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 27 TITIKPVAA-PTGVPSKEGHAVRNERLGRPLSPHLTIYKLQITSVLSITHRGT---GVAL 82
T +K +A P + G ++ GRPL PH+ ++ S L + GT GV
Sbjct: 249 TDCVKCIAVHPDKIRIATGQIAGVDKDGRPLQPHVRVWDSVSLSTLQVIGLGTFERGVGC 308
Query: 83 TAYALGLAGVGLT 95
A++ +GV L+
Sbjct: 309 LAFSKADSGVHLS 321
>sp|P69054|DHSC_ECOLI Succinate dehydrogenase cytochrome b556 subunit OS=Escherichia coli
(strain K12) GN=sdhC PE=1 SV=1
Length = 129
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 47 VRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTAYALGLAGVGLTTDINS 100
+RN + RP++ L + IT++ SI HR +GV +T A+G+ L T ++S
Sbjct: 2 IRNVKKQRPVNLDLQTIRFPITAIASILHRVSGV-ITFVAVGILLWLLGTSLSS 54
>sp|P69055|DHSC_ECO57 Succinate dehydrogenase cytochrome b556 subunit OS=Escherichia coli
O157:H7 GN=sdhC PE=3 SV=1
Length = 129
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 47 VRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTAYALGLAGVGLTTDINS 100
+RN + RP++ L + IT++ SI HR +GV +T A+G+ L T ++S
Sbjct: 2 IRNVKKQRPVNLDLQTIRFPITAIASILHRVSGV-ITFVAVGILLWLLGTSLSS 54
>sp|Q5ZRQ7|PPNK_LEGPH Probable inorganic polyphosphate/ATP-NAD kinase OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=ppnK PE=3 SV=1
Length = 295
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 43 EGHAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVAL------TAYALGLAGVGLTT 96
EG A+ + LGR HL + + I L +R G+ L TAYAL G +
Sbjct: 143 EGDALNDVVLGRGSETHLIEFDVYINQQLVSHYRSDGMILSTPTGSTAYALSAGGPIMHP 202
Query: 97 DINSVV 102
+N++V
Sbjct: 203 QLNAIV 208
>sp|Q5X168|PPNK_LEGPA Probable inorganic polyphosphate/ATP-NAD kinase OS=Legionella
pneumophila (strain Paris) GN=ppnK PE=3 SV=1
Length = 295
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 43 EGHAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVAL------TAYALGLAGVGLTT 96
EG A+ + LGR HL + + I L +R G+ L TAYAL G +
Sbjct: 143 EGDALNDVVLGRGSETHLIEFDVYINQQLVSHYRSDGMILSTPTGSTAYALSAGGPIMHP 202
Query: 97 DINSVV 102
+N++V
Sbjct: 203 QLNAIV 208
>sp|A5IHZ7|PPNK_LEGPC Probable inorganic polyphosphate/ATP-NAD kinase OS=Legionella
pneumophila (strain Corby) GN=ppnK PE=3 SV=1
Length = 295
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 43 EGHAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVAL------TAYALGLAGVGLTT 96
EG A+ + LGR HL + + I L +R G+ L TAYAL G +
Sbjct: 143 EGDALNDVVLGRGSETHLIEFDVYINQQLVSHYRSDGMILSTPTGSTAYALSAGGPIMHP 202
Query: 97 DINSVV 102
+N++V
Sbjct: 203 QLNAIV 208
>sp|Q5WSY8|PPNK_LEGPL Probable inorganic polyphosphate/ATP-NAD kinase OS=Legionella
pneumophila (strain Lens) GN=ppnK PE=3 SV=1
Length = 295
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 43 EGHAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVAL------TAYALGLAGVGLTT 96
EG A+ + LGR HL + + I L +R G+ L TAYAL G +
Sbjct: 143 EGDALNDVVLGRGSETHLIEFDVYINQQLVSHYRSDGMILSTPTGSTAYALSAGGPIMHP 202
Query: 97 DINSVV 102
+N++V
Sbjct: 203 QLNAIV 208
>sp|Q6Q304|GLYC_EMARV Envelope glycoprotein OS=European mountain ash ringspot-associated
virus (isolate Sorbus aucuparia) PE=2 SV=2
Length = 646
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 5 FKLSTLCNPIASSHLRLLPHIRTITIKP 32
F +T+C S H+ + H+R I +KP
Sbjct: 299 FTTATICGTCKSEHIAIGDHVRVINVKP 326
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,701,056
Number of Sequences: 539616
Number of extensions: 1444459
Number of successful extensions: 3185
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3162
Number of HSP's gapped (non-prelim): 37
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)