Query psy9435
Match_columns 106
No_of_seqs 128 out of 608
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 19:16:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zoy_C Large cytochrome bindin 99.9 1E-22 3.5E-27 146.8 5.0 66 40-105 7-74 (140)
2 2h88_C Succinate dehydrogenase 99.9 1.1E-22 3.9E-27 146.8 5.0 66 40-105 7-74 (140)
3 3vr8_C Cytochrome B-large subu 99.8 6.4E-22 2.2E-26 150.5 5.5 62 44-105 44-107 (188)
4 2wdq_C Succinate dehydrogenase 99.8 4.2E-20 1.4E-24 130.6 4.7 59 47-105 2-65 (129)
5 2wdq_D Succinate dehydrogenase 96.1 0.006 2.1E-07 41.8 4.2 35 71-105 15-52 (115)
6 2bs2_C Quinol-fumarate reducta 49.5 13 0.00044 28.5 3.2 40 66-105 21-65 (256)
7 1dj7_B Ferredoxin thioredoxin 10.3 65 0.0022 21.0 0.2 11 52-62 43-53 (75)
8 3mhp_C TIC62_peptide, ferredox 9.7 1E+02 0.0035 16.4 0.9 8 52-59 2-9 (26)
9 4gmj_A CCR4-NOT transcription 9.4 1.2E+02 0.004 23.2 1.4 19 61-79 162-180 (229)
10 4b19_A PEPA1; toxin, toxin apo 7.9 2.8E+02 0.0096 15.1 2.2 13 77-89 12-24 (30)
No 1
>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate, ubiquinone oxidoreductase, mitochondrial respiratory complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa} PDB: 1zp0_C* 3abv_C* 3ae1_C* 3ae2_C* 3ae3_C* 3ae4_C* 3ae5_C* 3ae6_C* 3ae7_C* 3ae8_C* 3ae9_C* 3aea_C* 3aeb_C* 3aec_C* 3aed_C* 3aee_C* 3aef_C* 3aeg_C* 3sfd_C* 3sfe_C*
Probab=99.86 E-value=1e-22 Score=146.77 Aligned_cols=66 Identities=38% Similarity=0.562 Sum_probs=58.0
Q ss_pred CCccchhhhhhccCCCCCCCccccccchhhHHHHHHHHHHHHHHHHH--HHHHHhcCCCCHHHHhhhc
Q psy9435 40 PSKEGHAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTAYA--LGLAGVGLTTDINSVVPTY 105 (106)
Q Consensus 40 ~~~~~~~~~~~r~~RPvSPhL~iYr~~lt~i~SIlHRiTGv~L~~~~--~~l~sl~~p~~f~~~~~~~ 105 (106)
+++++++++|+|++||+||||+|||||+||++||+|||||++|++++ ...+++.+|++|+.+.+.+
T Consensus 7 ~~~~~~~~~~~~~~RP~sphL~iYr~~~t~~~SIlHRiTGv~L~~~l~~~~~~~l~~p~~~~~~~~~~ 74 (140)
T 1zoy_C 7 EEMERFWNKNLGSNRPLSPHITIYRWSLPMAMSICHRGTGIALSAGVSLFGLSALLLPGNFESHLELV 74 (140)
T ss_dssp HHHHHHHHHHHSSCCCBCCCTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHH
T ss_pred hhHHHHHHhhhhcCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999988 3345778999999987654
No 2
>2h88_C Succinate dehydrogenase cytochrome B, large subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 2h89_C* 1yq3_C* 1yq4_C* 2fbw_C* 2wqy_C*
Probab=99.86 E-value=1.1e-22 Score=146.75 Aligned_cols=66 Identities=38% Similarity=0.550 Sum_probs=58.0
Q ss_pred CCccchhhhhhccCCCCCCCccccccchhhHHHHHHHHHHHHHHHHH--HHHHHhcCCCCHHHHhhhc
Q psy9435 40 PSKEGHAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTAYA--LGLAGVGLTTDINSVVPTY 105 (106)
Q Consensus 40 ~~~~~~~~~~~r~~RPvSPhL~iYr~~lt~i~SIlHRiTGv~L~~~~--~~l~sl~~p~~f~~~~~~~ 105 (106)
+++++++++|+|++||+||||+|||||+||++||+|||||++|++++ ...+++.+|++|+.+.+.+
T Consensus 7 ~~~~~~~~~~~~~~RP~sphL~iYr~~lt~~~SIlHRiTGv~L~~~l~~~~~~~l~~p~~~~~~~~~~ 74 (140)
T 2h88_C 7 EEMARFWEKNTKSSRPLSPHISIYKWSLPMAMSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVV 74 (140)
T ss_dssp HHHHHHHHHHHTSCCCBCCCTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred hhHHHHHHhhhhcCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999988 3335778999999987654
No 3
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=99.85 E-value=6.4e-22 Score=150.52 Aligned_cols=62 Identities=37% Similarity=0.457 Sum_probs=55.9
Q ss_pred chhhhhhccCCCCCCCccccccchhhHHHHHHHHHHHHHHHHH--HHHHHhcCCCCHHHHhhhc
Q psy9435 44 GHAVRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTAYA--LGLAGVGLTTDINSVVPTY 105 (106)
Q Consensus 44 ~~~~~~~r~~RPvSPhL~iYr~~lt~i~SIlHRiTGv~L~~~~--~~l~sl~~p~~f~~~~~~~ 105 (106)
++.++|+|++||+||||+|||||+||++||+|||||++|++++ ++++++.+|++|+.+.+.+
T Consensus 44 ~~l~~~~r~~RPlSPHLtIYr~qlt~~~SIlHRITGv~L~~~l~l~~la~l~sp~~f~~~~~~~ 107 (188)
T 3vr8_C 44 DYLMRQRALKRPIAPHLTIYKPQMTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEFI 107 (188)
T ss_pred HHHHHhhhcCCCCCCCcCeeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999888 4556888999999987754
No 4
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=99.79 E-value=4.2e-20 Score=130.59 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=46.2
Q ss_pred hhhhccCCCCCCCccccccchhhHHHHHHHHHHHHHHHHH----HHH-HHhcCCCCHHHHhhhc
Q psy9435 47 VRNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTAYA----LGL-AGVGLTTDINSVVPTY 105 (106)
Q Consensus 47 ~~~~r~~RPvSPhL~iYr~~lt~i~SIlHRiTGv~L~~~~----~~l-~sl~~p~~f~~~~~~~ 105 (106)
++|+|++||+||||+|||+|+++++||+|||||++|++++ +++ .++.+|++|+.+.+.+
T Consensus 2 ~~~~~~~RP~sphl~iyr~~~t~~~silhRiTGv~L~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 65 (129)
T 2wdq_C 2 IRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIM 65 (129)
T ss_dssp ------CCCBCCCGGGSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CccccccCCCCCCcCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999876 334 3667899999887653
No 5
>2wdq_D Succinate dehydrogenase hydrophobic membrane ANCH subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* 2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Probab=96.12 E-value=0.006 Score=41.79 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHH-HHH--HHhcCCCCHHHHhhhc
Q psy9435 71 LSITHRGTGVALTAYA-LGL--AGVGLTTDINSVVPTY 105 (106)
Q Consensus 71 ~SIlHRiTGv~L~~~~-~~l--~sl~~p~~f~~~~~~~ 105 (106)
-=++||+||++|++.+ +.+ ....++++|+.+.+.+
T Consensus 15 ~Wi~~RiSgv~L~~l~~~~l~~~~~~~~~~y~~~~~~~ 52 (115)
T 2wdq_D 15 DFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFF 52 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 3588999999999887 322 2345799999987653
No 6
>2bs2_C Quinol-fumarate reductase diheme cytochrome B subunit C; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: f.21.2.1 PDB: 1qlb_C* 1e7p_C* 2bs3_C* 2bs4_C*
Probab=49.53 E-value=13 Score=28.50 Aligned_cols=40 Identities=13% Similarity=0.080 Sum_probs=31.1
Q ss_pred chhhHHHHHHHHHHHHHHHHH---HHH--HHhcCCCCHHHHhhhc
Q psy9435 66 QITSVLSITHRGTGVALTAYA---LGL--AGVGLTTDINSVVPTY 105 (106)
Q Consensus 66 ~lt~i~SIlHRiTGv~L~~~~---~~l--~sl~~p~~f~~~~~~~ 105 (106)
..++..=.+|=+||++|++.+ ... ..+.+||.|+.+.+.+
T Consensus 21 ~~~a~~~~lmalTGliL~lFL~~Hm~~N~~il~G~eafn~~a~fl 65 (256)
T 2bs2_C 21 RMPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKF 65 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 456788888999999998877 332 3777899999988754
No 7
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=10.33 E-value=65 Score=21.04 Aligned_cols=11 Identities=45% Similarity=0.939 Sum_probs=9.4
Q ss_pred cCCCCCCCccc
Q psy9435 52 LGRPLSPHLTI 62 (106)
Q Consensus 52 ~~RPvSPhL~i 62 (106)
+.||+|++|.+
T Consensus 43 kGr~ISanlP~ 53 (75)
T 1dj7_B 43 QGRPISANLPV 53 (75)
T ss_dssp TTEECCCSSCE
T ss_pred cCcEecCCCCE
Confidence 68999999964
No 8
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=9.74 E-value=1e+02 Score=16.41 Aligned_cols=8 Identities=50% Similarity=0.775 Sum_probs=5.9
Q ss_pred cCCCCCCC
Q psy9435 52 LGRPLSPH 59 (106)
Q Consensus 52 ~~RPvSPh 59 (106)
..||+||-
T Consensus 2 ~~rPlSpy 9 (26)
T 3mhp_C 2 TEQPLSPY 9 (26)
T ss_dssp CCCCSSTT
T ss_pred CccccCcc
Confidence 46899883
No 9
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=9.36 E-value=1.2e+02 Score=23.21 Aligned_cols=19 Identities=5% Similarity=0.078 Sum_probs=15.0
Q ss_pred cccccchhhHHHHHHHHHH
Q psy9435 61 TIYKLQITSVLSITHRGTG 79 (106)
Q Consensus 61 ~iYr~~lt~i~SIlHRiTG 79 (106)
.||+||=+|+++|++=..-
T Consensus 162 ~iFkPPNPW~~~IL~lL~E 180 (229)
T 4gmj_A 162 VVFRPPNPWTMAIMNVLAE 180 (229)
T ss_dssp TTTSTTCHHHHHHHHHHHH
T ss_pred CcCCCCChhHHHHHHHHHH
Confidence 4899999999999864433
No 10
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=7.88 E-value=2.8e+02 Score=15.08 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHH
Q psy9435 77 GTGVALTAYALGL 89 (106)
Q Consensus 77 iTGv~L~~~~~~l 89 (106)
++|++.++.-.||
T Consensus 12 isGcivalF~hWL 24 (30)
T 4b19_A 12 ISGCAIAFFSYWL 24 (30)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6788888766555
Done!