RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9435
         (106 letters)



>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC
          {Escherichia coli [TaxId: 562]}
          Length = 129

 Score = 54.9 bits (132), Expect = 9e-12
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 48 RNERLGRPLSPHLTIYKLQITSVLSITHRGTGVALTAYALGL 89
          RN +  RP++  L   +  IT++ SI HR +GV        L
Sbjct: 3  RNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGIL 44


>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 167

 Score = 25.4 bits (56), Expect = 1.3
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 69  SVLSITHRG-------TGVALTAYALGLAGVGLTTDINSVVPT 104
            VL + HR        T VALTA A G  G+   T+  SV  +
Sbjct: 4   YVLRLGHRPERDKRISTHVALTARAFGAKGIYFDTEDKSVFES 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 350,309
Number of extensions: 13574
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 4
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)