BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9436
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8MUR4|RL13A_CHOPR 60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A
PE=2 SV=1
Length = 204
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 79/124 (63%), Gaps = 8/124 (6%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK +RG AL+RL+ Y+G PP Y R+R+ VP ALR CLKPGR YC VGR+SHEV
Sbjct: 88 GMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEV 147
Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQIN 183
GWKY+ +VR LE KR+ K++ K+ +TK AG +V KAT P T I
Sbjct: 148 GWKYREVVRKLEDKRKFKAVHKVAYERKL--------KKITKDAGAKVSKATAPFTAVIQ 199
Query: 184 TFGY 187
++GY
Sbjct: 200 SYGY 203
>sp|Q962U0|RL13A_SPOFR 60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2
SV=1
Length = 204
Score = 126 bits (316), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 8/124 (6%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK +RG AL+RL+ Y+G PP Y R+R+ VP ALR CLKPGR YC VGR+SHEV
Sbjct: 88 GMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEV 147
Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQIN 183
GWKY+ +VR LE KR+ KS++ L+ +TK++G++V K T P T I
Sbjct: 148 GWKYRDVVRKLENKRKVKSVK--------LMAYEKKLKRITKESGEKVAKTTAPFTAVIQ 199
Query: 184 TFGY 187
++GY
Sbjct: 200 SYGY 203
>sp|Q9VNE9|RL13A_DROME 60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A
PE=1 SV=1
Length = 205
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 76/125 (60%), Gaps = 8/125 (6%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RG AL RL+V++GIP Y +R+R+ VP A+R + L+ R YC VGR+SHEV
Sbjct: 88 GMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEV 147
Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQIN 183
GW Y+ +++ LERKR+ K +K H L LT KA + + KA P K I
Sbjct: 148 GWHYQDVIKSLERKRKAKLRVTLK-HNREL-------KKLTVKARENIAKAAEPFNKIIK 199
Query: 184 TFGYK 188
++GY+
Sbjct: 200 SYGYE 204
>sp|Q9P720|RL16_NEUCR 60S ribosomal protein L16 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-16
PE=3 SV=1
Length = 202
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 60/79 (75%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RGA AL+RLKV+EG+PP Y +++++ VP ALR + L+PGR +C+VGR+S EV
Sbjct: 88 GMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEV 147
Query: 124 GWKYKTIVRHLERKRREKS 142
GWKY+ +V LE +R+ K
Sbjct: 148 GWKYEDVVSRLEERRKAKG 166
>sp|O42991|RL16B_SCHPO 60S ribosomal protein L16-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl16b PE=1 SV=1
Length = 197
Score = 99.8 bits (247), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 13/124 (10%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RG AL+ L+ EGIPP + +++R+ VP ALR + LKPGR YC+VGR+S EV
Sbjct: 87 GMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEV 146
Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQIN 183
GWKY IV LE +R K+K Y ++ L K+ K P+ ++++
Sbjct: 147 GWKYNDIVAKLEERR------KVKSAAFY-------QAKLAKQKKIASAKEASPVNQKLS 193
Query: 184 TFGY 187
FGY
Sbjct: 194 QFGY 197
>sp|Q91487|RL13A_SALTR 60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a
PE=2 SV=1
Length = 189
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 58/79 (73%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RG AL+RLKV++G+PP Y +R+R+ VP AL+ V LKP R + +GR++HEV
Sbjct: 72 GMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEV 131
Query: 124 GWKYKTIVRHLERKRREKS 142
GWKY+ I LE KR+EK+
Sbjct: 132 GWKYQAITATLEEKRKEKA 150
>sp|O43004|RL16C_SCHPO 60S ribosomal protein L16-C OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl16c PE=3 SV=1
Length = 197
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 56/79 (70%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RG ALK L+ EGIPP + +++RL VP ALR + LKP R YC++GR+S EV
Sbjct: 87 GMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEV 146
Query: 124 GWKYKTIVRHLERKRREKS 142
GWKYK IV LE +R+ KS
Sbjct: 147 GWKYKNIVSKLEERRKIKS 165
>sp|Q3SZ90|RL13A_BOVIN 60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3
Length = 203
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 67/106 (63%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RG AL+RLKV++GIPP Y +++R+ VP AL+ V LKP R + +GR++HEV
Sbjct: 86 GMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEV 145
Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGK 169
GWKY+ + LE KR+EK+ + + E N+ KK GK
Sbjct: 146 GWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGK 191
>sp|O42848|RL16A_SCHPO 60S ribosomal protein L16-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl16a PE=1 SV=1
Length = 197
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 56/79 (70%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RG AL+ L+ EGIPP + +++R+ VP ALR + LKPGR YC+VGR+S EV
Sbjct: 87 GMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEV 146
Query: 124 GWKYKTIVRHLERKRREKS 142
GWKY IV LE +R+ KS
Sbjct: 147 GWKYSDIVSKLEERRKVKS 165
>sp|Q9XSU0|RL13A_CANFA 60S ribosomal protein L13a OS=Canis familiaris GN=RPL13A PE=1 SV=2
Length = 203
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 57/79 (72%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RG AL RLKV++GIPP Y +++R+ VP AL+ V LKP R + +GR++HEV
Sbjct: 86 GMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEV 145
Query: 124 GWKYKTIVRHLERKRREKS 142
GWKY+ + LE KR+EK+
Sbjct: 146 GWKYQAVTATLEEKRKEKA 164
>sp|P40429|RL13A_HUMAN 60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2
Length = 203
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 57/79 (72%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RG AL RLKV++GIPP Y +++R+ VP AL+ V LKP R + +GR++HEV
Sbjct: 86 GMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEV 145
Query: 124 GWKYKTIVRHLERKRREKS 142
GWKY+ + LE KR+EK+
Sbjct: 146 GWKYQAVTATLEEKRKEKA 164
>sp|Q5RA38|RL13A_PONAB 60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3
Length = 203
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 57/79 (72%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RG AL RLKV++GIPP Y +++R+ VP AL+ V LKP R + +GR++HEV
Sbjct: 86 GMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEV 145
Query: 124 GWKYKTIVRHLERKRREKS 142
GWKY+ + LE KR+EK+
Sbjct: 146 GWKYQAVTATLEEKRKEKA 164
>sp|Q4R8Z2|RL13A_MACFA 60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2
SV=3
Length = 203
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 57/79 (72%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RG AL RLKV++GIPP Y +++R+ VP AL+ V LKP R + +GR++HEV
Sbjct: 86 GMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEV 145
Query: 124 GWKYKTIVRHLERKRREKS 142
GWKY+ + LE KR+EK+
Sbjct: 146 GWKYQAVTTTLEEKRKEKA 164
>sp|P93099|RL13A_CYAPA 60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1
Length = 200
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 57/79 (72%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RGA AL+RLK +EG+PP Y + +R+ +P ALR + LKPGR +C +GR++ EV
Sbjct: 85 GMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEV 144
Query: 124 GWKYKTIVRHLERKRREKS 142
GW++ +V LE KR+ KS
Sbjct: 145 GWRHSDLVTRLEEKRKTKS 163
>sp|P35427|RL13A_RAT 60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2
Length = 203
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 57/79 (72%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RG AL+RLKV +GIPP Y +++R+ VP AL+ V LKP R + +GR++HEV
Sbjct: 86 GMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEV 145
Query: 124 GWKYKTIVRHLERKRREKS 142
GWKY+ + LE KR+EK+
Sbjct: 146 GWKYQAVTATLEEKRKEKA 164
>sp|P19253|RL13A_MOUSE 60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4
Length = 203
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 57/79 (72%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RG AL+RLKV +GIPP Y +++R+ VP AL+ V LKP R + +GR++HEV
Sbjct: 86 GMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEV 145
Query: 124 GWKYKTIVRHLERKRREKS 142
GWKY+ + LE KR+EK+
Sbjct: 146 GWKYQAVTATLEEKRKEKA 164
>sp|P26784|RL16A_YEAST 60S ribosomal protein L16-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL16A PE=1 SV=3
Length = 199
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M HK RG AL+RLKV+EGIPP Y +++R+ VP ALR + LKPGR Y ++G++S V
Sbjct: 86 GMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSV 145
Query: 124 GWKYKTIVRHLERKRREKSIE 144
GWKY+ +V LE KR+ S E
Sbjct: 146 GWKYEDVVAKLEAKRKVSSAE 166
>sp|P26785|RL16B_YEAST 60S ribosomal protein L16-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL16B PE=1 SV=3
Length = 198
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 58/81 (71%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M HK RG AL+RLK++EGIPP Y +++R+ VP ALR + LKPGR Y ++G++S V
Sbjct: 85 GMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSV 144
Query: 124 GWKYKTIVRHLERKRREKSIE 144
GWKY+ +V LE KR+ +S E
Sbjct: 145 GWKYEDVVAKLEDKRKVRSAE 165
>sp|O49885|RL13A_LUPLU 60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1
Length = 205
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 56/79 (70%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RG AL RLKVYEGIPP + +++RL VP AL+ + L+ G YC +G++S EV
Sbjct: 90 GMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEV 149
Query: 124 GWKYKTIVRHLERKRREKS 142
GW Y ++ LE+KR+E+S
Sbjct: 150 GWNYYDTIKELEKKRKERS 168
>sp|Q9SVR0|R13A3_ARATH 60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC
PE=2 SV=1
Length = 206
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 55/79 (69%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RGA AL RLKV+EGIPP Y + +R+ +P AL+ + L+ G YC +GR+S EV
Sbjct: 91 GMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEV 150
Query: 124 GWKYKTIVRHLERKRREKS 142
GW + ++ LE KR+E+S
Sbjct: 151 GWNHYDTIKELETKRKERS 169
>sp|Q9LRX8|R13A2_ARATH 60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB
PE=1 SV=1
Length = 206
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 55/79 (69%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RGA AL RLKV+EG+PP Y + +R+ +P AL+ + L+ G YC +GR+S EV
Sbjct: 91 GMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEV 150
Query: 124 GWKYKTIVRHLERKRREKS 142
GW + ++ LE KR+E+S
Sbjct: 151 GWNHYDTIKELEVKRKERS 169
>sp|Q9FKC0|R13A4_ARATH 60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD
PE=2 SV=1
Length = 206
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 6/89 (6%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RGA AL RLKVYEG+P Y + +R+ +P AL+ + L+ G YC +GR+S EV
Sbjct: 91 GMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEV 150
Query: 124 GWKYKTIVRHLERKRREKSIEKIKLHTVY 152
GW + ++ LE KR+E++ H VY
Sbjct: 151 GWNHYDTIKELETKRKERA------HVVY 173
>sp|O65055|RL13A_PICMA 60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1
Length = 206
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 53/79 (67%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RGA AL L+ +EG+PP Y R++R+ +P AL+ + L+PG YC +GR+S EV
Sbjct: 91 GMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEV 150
Query: 124 GWKYKTIVRHLERKRREKS 142
GW + + LE KR+ K+
Sbjct: 151 GWHHFDTITELEEKRKAKA 169
>sp|Q9SFU1|R13A1_ARATH 60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA
PE=2 SV=1
Length = 206
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 54/79 (68%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RGA AL RLKV+EG+P Y + +R+ VP AL+ + L+ G YC +GR+S EV
Sbjct: 91 GMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEV 150
Query: 124 GWKYKTIVRHLERKRREKS 142
GW + ++ LE KR+E++
Sbjct: 151 GWNHYDTIKELENKRKERA 169
>sp|Q27389|RL13A_CAEEL 60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2
SV=1
Length = 202
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK +RG +ALK L+ YEG+P KY + + L P+A R L+P R +C VGR+SHEV
Sbjct: 87 GMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEV 145
Query: 124 GWKYKTIVRHLERKRREKS 142
GW+++ +V LE KR+ K
Sbjct: 146 GWQFQDVVAKLEAKRKVKG 164
>sp|Q553M7|RL13A_DICDI 60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a
PE=1 SV=1
Length = 187
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 52/79 (65%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK RG AL +KV+EG+P Y + +R+ VP+ALR V L R Y + R+S EV
Sbjct: 86 GMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKLNTTRKYTVLSRLSQEV 145
Query: 124 GWKYKTIVRHLERKRREKS 142
GWKY+ +V LE +R+++S
Sbjct: 146 GWKYRAVVAKLEVQRKQRS 164
>sp|Q6NVV1|R13AX_HUMAN Putative 60S ribosomal protein L13a-like MGC87657 OS=Homo sapiens
PE=5 SV=1
Length = 102
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 52/78 (66%)
Query: 65 MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124
M HK RG +L LKV++GIPP Y +++R+ VP AL+ V LKP R + +GR + EV
Sbjct: 1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVR 60
Query: 125 WKYKTIVRHLERKRREKS 142
WKY+ + LE KR+EK+
Sbjct: 61 WKYQAVTATLEEKRKEKA 78
>sp|P0DJ15|RL13A_TETTS 60S ribosomal protein L13a OS=Tetrahymena thermophila (strain
SB210) GN=RPL13A PE=1 SV=1
Length = 198
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M PHK +GA AL+RLK++EGIP Y R ++ V AL+ L+ R C +G +S V
Sbjct: 85 GMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSASV 144
Query: 124 GWKYKTIVRHLERKRREKS 142
GW +T++ LE KRR ++
Sbjct: 145 GWGKQTLIEKLEEKRRARA 163
>sp|Q95307|RL13A_PIG 60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2
SV=2
Length = 137
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRI 119
M PHK RG AL RLKV++GIPP Y +++R+ VP AL+ V LK + +GR+
Sbjct: 82 GMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137
>sp|Q9V196|RL13_PYRAB 50S ribosomal protein L13P OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl13p PE=3 SV=1
Length = 142
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 54 SIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSY 113
S E R M P K DRG KA KRLKVY GIP ++ +Q + A + +P Y
Sbjct: 71 SDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEAHVSRLSRP--KY 128
Query: 114 CSVGRISHEVGWKY 127
+VG ++ +G K+
Sbjct: 129 VTVGEVAKFLGGKF 142
>sp|O59300|RL13_PYRHO 50S ribosomal protein L13P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl13p PE=1 SV=1
Length = 142
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 54 SIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSY 113
S E R M P K DRG KA +RLKVY GIP ++ +Q + A + +P Y
Sbjct: 71 SDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVSRLSRP--KY 128
Query: 114 CSVGRISHEVGWKY 127
+VG ++ +G K+
Sbjct: 129 VTVGEVAKFLGGKF 142
>sp|Q5JJF6|RL13_PYRKO 50S ribosomal protein L13P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl13p PE=3 SV=1
Length = 142
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 54 SIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSY 113
S E R M P K DRG KA KRLKVY G+P ++ ++ + A + P Y
Sbjct: 71 SDEIVRRTVRGMLPWKTDRGRKAFKRLKVYVGVPKEFEGKEFETISEAHMSRLATP--KY 128
Query: 114 CSVGRISHEVGWKY 127
+VG ++ +G K+
Sbjct: 129 VTVGEVAKFLGGKF 142
>sp|Q8U0E6|RL13_PYRFU 50S ribosomal protein L13P OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl13p PE=1 SV=1
Length = 142
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 54 SIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSY 113
S E R M P K DRG KA KRLKVY GIP ++ ++ + A + +P Y
Sbjct: 71 SDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEAHVSRLSRP--KY 128
Query: 114 CSVGRISHEVGWKY 127
+VG ++ +G K+
Sbjct: 129 VTVGEVAKFLGGKF 142
>sp|Q12TI6|RL13_METBU 50S ribosomal protein L13P OS=Methanococcoides burtonii (strain DSM
6242) GN=rpl13p PE=3 SV=1
Length = 139
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M P+K RG A+ RLKVY GIP +Y + + V A T Y ++G +S ++
Sbjct: 78 GMLPYKRARGKDAMGRLKVYVGIPYEYQDAEFVSVEGAEMTRL--SSNKYVTIGDVSRQL 135
Query: 124 GWKY 127
G K+
Sbjct: 136 GSKF 139
>sp|Q8TT43|RL13_METAC 50S ribosomal protein L13P OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpl13p PE=3
SV=1
Length = 143
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M P+K RG A+ RLKVY G+P + + + +P A + L Y +G +S ++
Sbjct: 82 GMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA--DMRLLSSSRYVELGEVSQKM 139
Query: 124 GWKY 127
G K+
Sbjct: 140 GSKF 143
>sp|Q46CK6|RL13_METBF 50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro
/ DSM 804) GN=rpl13p PE=3 SV=1
Length = 140
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M P+K RG A+ RLKVY G+P + + + + A + L Y +G +S ++
Sbjct: 79 GMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA--DMRLLSSSKYIELGEVSQKM 136
Query: 124 GWKY 127
G K+
Sbjct: 137 GSKF 140
>sp|Q2FTN5|RL13_METHJ 50S ribosomal protein L13P OS=Methanospirillum hungatei (strain
JF-1 / DSM 864) GN=rpl13p PE=3 SV=1
Length = 140
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M P+K +RG +A+KR+++Y G+P + + + + A + P S+ ++G +S +
Sbjct: 79 GMIPYKRERGIEAMKRIRIYVGVPDELSGQPFETIEDASKKRLGNP--SHVTLGAVSTFL 136
Query: 124 GWKY 127
G KY
Sbjct: 137 GAKY 140
>sp|Q8PW45|RL13_METMA 50S ribosomal protein L13P OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rpl13p PE=3 SV=2
Length = 140
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M P+K RG A+ RLKVY G+P + + + A + L Y +G +S ++
Sbjct: 79 GMLPYKRARGRDAMSRLKVYVGVPYELKGAETTTIADA--DMRLLSSNKYVELGEVSQKM 136
Query: 124 GWKY 127
G K+
Sbjct: 137 GSKF 140
>sp|P95991|RL13_SULSO 50S ribosomal protein L13P OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl13p PE=3 SV=1
Length = 149
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M P K +G + LK +K+Y G+P ++ RQ + P + V G+ Y +V +S E+
Sbjct: 90 GMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQFIKFPDS--DVSRLKGK-YVTVEVVSKEL 145
Query: 124 GW 125
GW
Sbjct: 146 GW 147
>sp|B1YC32|RL13_PYRNV 50S ribosomal protein L13P OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=rpl13p PE=3 SV=1
Length = 182
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCV----PTALRTVCLKPGRSYCSVGRI 119
M P + + G +ALKRL+VY +P + R+RL V P LR ++P Y ++ +
Sbjct: 100 GMLPKRAESGRRALKRLRVYVSVPMELLSRKRLVVYEVPPAKLR---MRPLAKYVTLEEV 156
Query: 120 SHEV---GWKYKTIVRHLERKRREKS 142
+V W+ + L +KR + S
Sbjct: 157 WRQVDPAAWEQWKKAQELWQKRLKPS 182
>sp|Q8ZYQ1|RL13_PYRAE 50S ribosomal protein L13P OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl13p PE=3 SV=1
Length = 187
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLC---VPTALRTVCLKPGRSYCSVGRIS 120
M P K + G ALKRL+VY IP + +R+RL VP A + L+P Y ++ +
Sbjct: 102 GMLPKKSETGRSALKRLRVYMSIPIEIMQRKRLVLYEVPEA--KLRLRPLLQYTTLEEVW 159
Query: 121 HEV 123
+
Sbjct: 160 RSI 162
>sp|O26146|RLSX_METTH Fused L13/S9 ribosomal protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpl13p/rps9p PE=3 SV=1
Length = 282
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M P+K +G +A K LK Y GIP ++ + + +P A + +K G +G IS +
Sbjct: 84 GMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA-KAGSIKKG---MELGEISELL 139
Query: 124 G 124
G
Sbjct: 140 G 140
>sp|A1RSE1|RL13_PYRIL 50S ribosomal protein L13P OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rpl13p PE=3 SV=1
Length = 185
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLC---VPTA 101
M P K RG ALKRL+VY IP + R++L VP A
Sbjct: 100 GMLPKKNMRGRSALKRLRVYMSIPLEMLNRKKLVLYEVPLA 140
>sp|O29137|RL13_ARCFU 50S ribosomal protein L13P OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rpl13p PE=3 SV=1
Length = 156
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 64 SMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123
M P K RG A +RL+V+ G+P + R+ + AL K + Y ++ +S +
Sbjct: 93 GMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDALLEKVSKTDK-YVTLAEVSRYL 151
Query: 124 GWK 126
G++
Sbjct: 152 GFR 154
>sp|B6D985|HPT_CEREL Haptoglobin OS=Cervus elaphus GN=HP PE=2 SV=1
Length = 400
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 22/115 (19%)
Query: 14 ATLVTEK---TTSTKRNIGHFDRKRKQARHESKIRAVEKLELFSIENARNQSESMTPHKL 70
ATL+ E+ TT+ +GH K+ + L L+ +N + E + H
Sbjct: 183 ATLINERWLLTTAKNLYLGHTSDKKAK-------DIAPTLRLYVGKNQPVEVEKVVLHP- 234
Query: 71 DRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGW 125
DR + +K+ RQ++ V + +CL P + Y +VGR+ + GW
Sbjct: 235 DRSKVDIGLIKL----------RQKVPVNEKVMPICL-PSKDYVAVGRVGYVSGW 278
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,725,998
Number of Sequences: 539616
Number of extensions: 2311126
Number of successful extensions: 5990
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5940
Number of HSP's gapped (non-prelim): 57
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)