Query psy9436
Match_columns 188
No_of_seqs 191 out of 423
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 19:18:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_K 60S ribosomal protein L 100.0 1.3E-47 4.4E-52 323.3 9.0 135 45-187 72-206 (206)
2 4a17_I RPL13A, 60S ribosomal p 100.0 3.8E-47 1.3E-51 318.8 11.2 132 46-187 67-198 (198)
3 4b6a_O 60S ribosomal protein L 100.0 3.7E-46 1.3E-50 313.1 11.8 134 44-187 66-199 (199)
4 2zkr_j 60S ribosomal protein L 100.0 2.4E-47 8.2E-52 321.0 3.2 150 31-188 48-202 (203)
5 3jyw_M 60S ribosomal protein L 100.0 8E-33 2.7E-37 228.7 3.1 91 46-136 62-152 (178)
6 1j3a_A 50S ribosomal protein L 100.0 7.3E-30 2.5E-34 204.3 5.9 84 41-127 59-142 (142)
7 1vq8_J 50S ribosomal protein L 99.9 5.5E-28 1.9E-32 194.3 5.4 78 45-127 66-143 (145)
8 3bbo_L Ribosomal protein L13; 99.5 1.9E-15 6.3E-20 130.8 3.9 63 44-107 186-248 (250)
9 3r8s_J 50S ribosomal protein L 99.5 6.1E-15 2.1E-19 118.3 4.1 54 44-98 87-140 (142)
10 3v2d_N 50S ribosomal protein L 99.5 6.6E-15 2.2E-19 117.9 4.0 56 42-98 83-138 (140)
11 3f1f_N 50S ribosomal protein L 99.5 2.1E-14 7.1E-19 117.7 4.8 57 41-98 105-161 (163)
12 2zjr_G 50S ribosomal protein L 99.5 1.8E-14 6.2E-19 119.0 2.7 56 43-99 112-167 (174)
13 2ftc_H L13MT, MRP-L13, 39S rib 99.4 3.4E-14 1.2E-18 114.6 4.0 54 44-98 90-143 (148)
14 1wi9_A Protein C20ORF116 homol 70.2 3.7 0.00013 29.5 3.2 27 111-137 19-45 (72)
15 1nd9_A Translation initiation 31.8 40 0.0014 20.2 2.9 24 114-137 3-26 (49)
16 3i71_A Ethanolamine utilizatio 23.4 51 0.0017 23.2 2.4 27 109-135 14-40 (68)
17 1sd4_A Penicillinase repressor 23.2 46 0.0016 23.2 2.3 25 113-137 24-55 (126)
18 2heo_A Z-DNA binding protein 1 21.4 99 0.0034 20.2 3.5 28 112-139 24-51 (67)
No 1
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=100.00 E-value=1.3e-47 Score=323.31 Aligned_cols=135 Identities=34% Similarity=0.565 Sum_probs=132.3
Q ss_pred chHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhhccCCCCCeeehhhhHHHhc
Q psy9436 45 RAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124 (188)
Q Consensus 45 ~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~rlkp~rKy~tLGeLs~evG 124 (188)
+++++++++|++|||++||||||||+++|+++|+||+||+|+|+||+.+++|+||+||++.+|+|+||||+|||||++||
T Consensus 72 ~~~~~~~r~P~~Il~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqk~~vvP~al~v~~l~p~rk~~~lg~ls~~~G 151 (206)
T 3iz5_K 72 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKEVG 151 (206)
T ss_dssp SSCSCCCCSHHHHHHHHHHHHSCTTSHHHHHHHTTEEEESSCCTTCCSCCBCCTTTBCBTTBCSSSSCEEEHHHHGGGTC
T ss_pred cccchhhcCHHHHHHHHHhccCCCCChhHHHHHhCCEEeCCCCCChhhcccccCchHHhhhhcCCCCCeEEHHHHHHHHC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHhhHHHHHHhHHHHHhcchHHHHHhhcCC
Q psy9436 125 WKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQINTFGY 187 (188)
Q Consensus 125 WKy~~vv~~LE~KRK~ka~~~y~kK~~~~~~~~~~~~kl~~~A~k~~~k~~~~~~~~L~~~Gy 187 (188)
|+|++||++||++||+|+++||++|++ .++++++|++++++++++++++|+++||
T Consensus 152 wk~~~vv~~le~krk~k~~~~y~~k~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~y 206 (206)
T 3iz5_K 152 WNYADTIRELEEKRKEKAKVSYDRRKQ--------LAKLRVKAEKAAEEKLGTQLEILAPIKY 206 (206)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHSCCCCSSTTHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhHHHHHHhhccC
Confidence 999999999999999999999999999 9999999999999999999999999998
No 2
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=100.00 E-value=3.8e-47 Score=318.77 Aligned_cols=132 Identities=30% Similarity=0.471 Sum_probs=127.9
Q ss_pred hHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhhccCCCCCeeehhhhHHHhcc
Q psy9436 46 AVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGW 125 (188)
Q Consensus 46 ~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~rlkp~rKy~tLGeLs~evGW 125 (188)
.+++++++|++|||++||||||||+++|+++|+||+||+|+|+||+.+++|+||+|+++.+|+|+||||+||+||++|||
T Consensus 67 ~g~~~~r~P~rIi~~AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~al~v~rl~~~rk~~~lg~ls~~~Gw 146 (198)
T 4a17_I 67 RGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSASVGW 146 (198)
T ss_dssp SSCCCCCSHHHHHHHHHHTTTTTTSHHHHHHHHHCEECSSCCGGGTTSCCBCCGGGBHHHHSCTTSCEEEHHHHHHHTTC
T ss_pred cccccccCHHHHHHHHHhccCCCCChhHHHHHhCcEEecCCCCChhhccccccchHhhhhhcCCCCCeEEHHHHHHHhCc
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHhhHHHHHHhHHHHHhcchHHHHHhhcCC
Q psy9436 126 KYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQINTFGY 187 (188)
Q Consensus 126 Ky~~vv~~LE~KRK~ka~~~y~kK~~~~~~~~~~~~kl~~~A~k~~~k~~~~~~~~L~~~Gy 187 (188)
+|++||++||++||+++++||++|++ ..+++++|+++++++ +++++|++|||
T Consensus 147 k~~~vv~~le~krk~k~~~~y~~k~~--------~~~~~~~a~~~~~~~--~~~~~l~~~g~ 198 (198)
T 4a17_I 147 GKQTLIEKLEEKRRARAKTYHDKKVK--------QADARKKELAAPALK--AIKDKLAQFGY 198 (198)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHTTSSHHHH--HHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhh--hHHHHHHHcCC
Confidence 99999999999999999999999999 999999999998875 59999999998
No 3
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=100.00 E-value=3.7e-46 Score=313.08 Aligned_cols=134 Identities=35% Similarity=0.571 Sum_probs=127.8
Q ss_pred cchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhhccCCCCCeeehhhhHHHh
Q psy9436 44 IRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEV 123 (188)
Q Consensus 44 ~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~rlkp~rKy~tLGeLs~ev 123 (188)
.+++++++++|++||+++||||||||+++|++||+||+||+|+|+||+.++++|||+|+++.+|+|+||||+|||||++|
T Consensus 66 ~~~~~~~~r~P~~il~~aVrGMLP~K~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~Al~~~~lkp~~Ky~~lg~ls~~~ 145 (199)
T 4b6a_O 66 KTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSV 145 (199)
T ss_dssp TTTSCCCCCSHHHHHHHHHHTTSCTTSHHHHHHHHTEEECSSCCSGGGGSCCBBCGGGBHHHHSCTTCCEEEHHHHHHHT
T ss_pred CCHHHHhhcCcHHHHHHHHhccCCCCChhhhHHHhccEEeCCCCCCcccCCCEecchHHHhhccCCCCCeEEhhhhHHHh
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHhhHHHHHHhHHHHHhcchHHHHHhhcCC
Q psy9436 124 GWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQINTFGY 187 (188)
Q Consensus 124 GWKy~~vv~~LE~KRK~ka~~~y~kK~~~~~~~~~~~~kl~~~A~k~~~k~~~~~~~~L~~~Gy 187 (188)
||||++||++||++||+|+++||++|++ ..+++++|.++++ .++++++|++|||
T Consensus 146 Gwk~~~vv~~le~krk~k~~~~~~~k~~--------~~k~~~~a~~~~~--~~~~~~~l~~~gy 199 (199)
T 4b6a_O 146 GWKYEDVVAKLEAKRKVRSAEYYAKKRA--------FTKKVASANATAA--ESDVAKQLAALGY 199 (199)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH--TSHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhh--hhHHHHHHHHcCC
Confidence 9999999999999999999999999999 8888888887764 4689999999998
No 4
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.4e-47 Score=321.01 Aligned_cols=150 Identities=35% Similarity=0.528 Sum_probs=80.4
Q ss_pred hhHHhHhhhccCcc-----chHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhh
Q psy9436 31 FDRKRKQARHESKI-----RAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTV 105 (188)
Q Consensus 31 ~~~~~~~~~~~~~~-----~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~ 105 (188)
++++..-.+|.+++ +++++++++|++|||++||||||||+++|+++|+||+||+|+|+||+.++.++||+|+++.
T Consensus 48 ~~~K~yy~~h~~~~~~~n~~~G~~~~r~P~~I~~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqkp~vvp~a~~v~ 127 (203)
T 2zkr_j 48 YRNKLNYLAFLRKRMNTNPSRGPYDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVV 127 (203)
T ss_dssp HHHHHHSSSSSCHHHHCCCSSCCCCCCSHHHHHHHHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGBCCSS
T ss_pred HHHHHHHHHHHhhcccCCCCCCccccCChHHHHHHHHHhhCCCCChhHHHHHhCcEEeCCCCCchhhcCCcccchhhhhh
Confidence 44555543565333 6677889999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCeeehhhhHHHhccchHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHhhHHHHHHhHHHHHhcchHHHHHhhc
Q psy9436 106 CLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKIKLHTVYLIPCLDCESNLTKKAGKQVKKATFPLTKQINTF 185 (188)
Q Consensus 106 rlkp~rKy~tLGeLs~evGWKy~~vv~~LE~KRK~ka~~~y~kK~~~~~~~~~~~~kl~~~A~k~~~k~~~~~~~~L~~~ 185 (188)
+++|+++||+|||||++|||||++||++||++||+++++||++|++ +.+++++|++++++++++++++|++|
T Consensus 128 ~~~~~~ky~~lg~ls~~~Gwk~~~vv~~le~kRk~k~~~~y~~kk~--------~~~~~~~a~~~~~~~~~~~~~~l~~~ 199 (203)
T 2zkr_j 128 RLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQ--------LMRLRKQAEKNVEKKIDKYTEVLKTH 199 (203)
T ss_dssp SSSCCSCEEEHHHHC-----------------------------------------------------------------
T ss_pred hcCCCCceEEHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhhHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred CCC
Q psy9436 186 GYK 188 (188)
Q Consensus 186 Gy~ 188 (188)
||+
T Consensus 200 g~~ 202 (203)
T 2zkr_j 200 GLL 202 (203)
T ss_dssp ---
T ss_pred CCC
Confidence 994
No 5
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.97 E-value=8e-33 Score=228.70 Aligned_cols=91 Identities=38% Similarity=0.616 Sum_probs=87.1
Q ss_pred hHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhhccCCCCCeeehhhhHHHhcc
Q psy9436 46 AVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGW 125 (188)
Q Consensus 46 ~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~rlkp~rKy~tLGeLs~evGW 125 (188)
.+++++++|++|||++||||||||+++|+++|+||+||+|+|+||+.+++++||+|+++.+++|+++||+||+||+++||
T Consensus 62 ~~~~~~r~P~~Il~~AVrGMLP~K~~lGr~~l~rLkVy~G~~hp~~aqk~~vvp~Alrv~RLkp~rKy~tLGels~~vGw 141 (178)
T 3jyw_M 62 RGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGW 141 (178)
T ss_dssp SSCCCCSSTTTHHHHHTTSSSCSSSHHHHHHHHHCCEESSCCCCSCCSCSSSCCSSCCCCCSSSCSCCCCHHHHSSTTTC
T ss_pred ccccccCCHHHHHHHHHHHHhhcccHhHHHHHhCCeeeCCCCCchhhcccccCchHhhhhccCCCCceEEcchhhhhcCC
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHH
Q psy9436 126 KYKTIVRHLER 136 (188)
Q Consensus 126 Ky~~vv~~LE~ 136 (188)
||++||+.--+
T Consensus 142 k~~~~~~~~~~ 152 (178)
T 3jyw_M 142 KAAAAAAAAAA 152 (178)
T ss_dssp CCHHHHHTHHH
T ss_pred cchhhHHHHHH
Confidence 99999986543
No 6
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=99.96 E-value=7.3e-30 Score=204.29 Aligned_cols=84 Identities=33% Similarity=0.426 Sum_probs=73.3
Q ss_pred cCccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhhccCCCCCeeehhhhH
Q psy9436 41 ESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRIS 120 (188)
Q Consensus 41 ~~~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~rlkp~rKy~tLGeLs 120 (188)
.++.+ +++++++|++|||++||||||||+++|+++|+||+||+|+|+||+.++.+++|.|+. .++ +++|||+|||||
T Consensus 59 ~~~~~-~~~~~r~P~~ii~~aVrGMLP~k~~lgr~~l~rLkVy~G~~hp~~aqkp~~~~~a~~-~~~-~~~k~~~lg~ls 135 (142)
T 1j3a_A 59 TNPRR-GPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHV-SRL-SRPKYVTVGEVA 135 (142)
T ss_dssp ---------CCCSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBG-GGS-SSCCEEEHHHHH
T ss_pred cCCcc-CcccccCHHHHHHHHHHhhccCCCHHHHHHHhCcEEeCCCCCCccccCcEeccHHHh-hcc-CCCCeEEHHHHH
Confidence 44566 889999999999999999999999999999999999999999999999999999996 676 599999999999
Q ss_pred HHhccch
Q psy9436 121 HEVGWKY 127 (188)
Q Consensus 121 ~evGWKy 127 (188)
++|||||
T Consensus 136 ~~~Gwk~ 142 (142)
T 1j3a_A 136 KFLGGKF 142 (142)
T ss_dssp HHHTCCC
T ss_pred HHhCCCC
Confidence 9999997
No 7
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=99.94 E-value=5.5e-28 Score=194.34 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=74.1
Q ss_pred chHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhhccCCCCCeeehhhhHHHhc
Q psy9436 45 RAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVG 124 (188)
Q Consensus 45 ~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~rlkp~rKy~tLGeLs~evG 124 (188)
+++++++++|++||+++||||||||+++|+++|+||+||+|+|+| +++++||.|+. .++ +++|||+|||||++||
T Consensus 66 ~~~~~~~r~P~~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p---~k~~vv~~a~~-~~l-~~~k~~~lg~ls~~~G 140 (145)
T 1vq8_J 66 DNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD---EDGEVLDGTSL-DRL-SNIKFVTLGEISETLG 140 (145)
T ss_dssp SSCCCCCCSHHHHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS---SCCBCCTTCBC-CTT-SCCSEEEHHHHHHHHT
T ss_pred CHHHHhhcChHHHHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC---CCceeeehhhh-hcc-CCCCeEEHHHHHHHhC
Confidence 888899999999999999999999999999999999999999999 78999999985 666 4999999999999999
Q ss_pred cch
Q psy9436 125 WKY 127 (188)
Q Consensus 125 WKy 127 (188)
|||
T Consensus 141 wk~ 143 (145)
T 1vq8_J 141 ANK 143 (145)
T ss_dssp CCC
T ss_pred Ccc
Confidence 998
No 8
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.54 E-value=1.9e-15 Score=130.76 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=48.9
Q ss_pred cchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecccchhhhcc
Q psy9436 44 IRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCL 107 (188)
Q Consensus 44 ~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP~Alrv~rl 107 (188)
.+++++++++|++|||++||||||+ +.+|+++|+||+||+|.|+||+.++.+++|-|+++++|
T Consensus 186 ~t~~~l~~r~PerIi~kAVrGMLPk-n~lGr~~lkrLkVY~G~~HPh~aQkp~~l~ia~k~v~~ 248 (250)
T 3bbo_L 186 ETFDQLQKRIPERIIEHAVRGMLPK-GRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRV 248 (250)
T ss_dssp CCHHHHTTSCTTHHHHHHHHTTSCS-SSSHHHHHTTCCCCSSSCCSCTTSCC------------
T ss_pred ccHHHhhhcChHHHHHHHHHhcCCC-CchHHHHHhCcEEeCCCCCCHHHcCCeeechhhheeec
Confidence 4689999999999999999999996 88999999999999999999999999999999988775
No 9
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=99.51 E-value=6.1e-15 Score=118.32 Aligned_cols=54 Identities=22% Similarity=0.192 Sum_probs=50.2
Q ss_pred cchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceec
Q psy9436 44 IRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCV 98 (188)
Q Consensus 44 ~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vV 98 (188)
.+++++++++|++|||++|||||| |+++|+++|+||+||+|.|+||+.++..++
T Consensus 87 ~~~~~~~~r~P~~ii~~aVrGMLP-kn~lgr~~l~rLkVy~G~~hph~aq~p~~l 140 (142)
T 3r8s_J 87 ATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAGNEHNHAAQQPQVL 140 (142)
T ss_dssp CBHHHHHHHCSHHHHHHHHHHHSC-SSHHHHHHHTTEEECSSSCCSCGGGCCEEC
T ss_pred cCHHHHHhhCHHHHHHHHHHhcCC-CChhHHHHHhCCEEECCCCCCcccCCCeec
Confidence 488999999999999999999999 799999999999999999999999886654
No 10
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=99.51 E-value=6.6e-15 Score=117.90 Aligned_cols=56 Identities=23% Similarity=0.234 Sum_probs=51.3
Q ss_pred CccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceec
Q psy9436 42 SKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCV 98 (188)
Q Consensus 42 ~~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vV 98 (188)
..++++++++++|++|||++||||||+ +++|+++|+||+||+|.|.||+.++-.++
T Consensus 83 k~~~~~~~~~r~P~~ii~~aVrGMLPk-~~lgr~~l~rLkVy~G~~hph~aq~p~~~ 138 (140)
T 3v2d_N 83 KKIPLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQRPEKL 138 (140)
T ss_dssp EEEEHHHHHHHCTHHHHHHHHHHTSCS-SHHHHHHHHTEEECSSSCCSCGGGCCEEE
T ss_pred eeccHHHhhhhCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEeCCCCCCcccCCCeec
Confidence 456899999999999999999999996 89999999999999999999999876543
No 11
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=99.48 E-value=2.1e-14 Score=117.68 Aligned_cols=57 Identities=23% Similarity=0.214 Sum_probs=51.7
Q ss_pred cCccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceec
Q psy9436 41 ESKIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCV 98 (188)
Q Consensus 41 ~~~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vV 98 (188)
-..++++++++++|++|||++||||||+ +.+|+++|+||+||+|.|+||+.++-.++
T Consensus 105 lk~~t~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVY~G~~hPh~aQ~P~~l 161 (163)
T 3f1f_N 105 LKKIPLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQRPEKL 161 (163)
T ss_dssp BCCEEHHHHHHSSCHHHHHHHHHTTSCS-SHHHHHHHHTCEECSSSCCCCCSCCCBCC
T ss_pred ceeeehHHhhhcCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEECCCCCCcccCCCeec
Confidence 3567899999999999999999999996 79999999999999999999999875543
No 12
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=99.45 E-value=1.8e-14 Score=119.03 Aligned_cols=56 Identities=21% Similarity=0.188 Sum_probs=52.3
Q ss_pred ccchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceecc
Q psy9436 43 KIRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVP 99 (188)
Q Consensus 43 ~~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vVP 99 (188)
.++++++++++|++|||++||||||+ +++|+++|+||+||+|.|+||+.++.++++
T Consensus 112 ~~~~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVy~G~~hph~aqkp~~l~ 167 (174)
T 2zjr_G 112 TETAREALSKHPERVIEHAVFGMLPK-GRQGRAMHTRLKVYAGETHPHSAQKPQVLK 167 (174)
T ss_dssp EEEESTTTTSCHHHHHHHHHGGGSCC-SHHHHHHHTTCEECSCSTGGGGSCCSCCCC
T ss_pred cccHHHHhhcChHHHHHHHHHhcCCC-ChhHHHHHhCeEEECCCCCChhccCCeEEe
Confidence 46888999999999999999999995 999999999999999999999999988776
No 13
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.45 E-value=3.4e-14 Score=114.58 Aligned_cols=54 Identities=11% Similarity=0.023 Sum_probs=49.4
Q ss_pred cchHHHHhhchHHHHHHHhhCCCCCCCcchHHHhhccccccCCCCCcccccceec
Q psy9436 44 IRAVEKLELFSIENARNQSESMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCV 98 (188)
Q Consensus 44 ~~~~~~l~r~Pd~If~RtVRGMLPhKt~RGr~ALkRLKvy~GiP~pyd~kKr~vV 98 (188)
.+++++++++|++|||++||||||++ .+|+++|+||+||+|.|.|++.++.+++
T Consensus 90 ~~~~~~~~r~P~~ii~~aVrGMLPkn-~lgr~~l~rLkVy~G~~hP~~aq~p~~~ 143 (148)
T 2ftc_H 90 VTAAQLHLRDPVAIVKLAIYGMLPKN-LHRRTMMERLHLFPDEYIPEDILKNLVE 143 (148)
T ss_pred ccHHHHhhcCHHHHHHHHHHhcCCCC-chHHHHHhCcEEeCCCCCChHHhCCeee
Confidence 47899999999999999999999975 9999999999999999999998876654
No 14
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=70.21 E-value=3.7 Score=29.47 Aligned_cols=27 Identities=4% Similarity=0.224 Sum_probs=24.7
Q ss_pred CCeeehhhhHHHhccchHHHHHHHHHH
Q psy9436 111 RSYCSVGRISHEVGWKYKTIVRHLERK 137 (188)
Q Consensus 111 rKy~tLGeLs~evGWKy~~vv~~LE~K 137 (188)
+|-+.|.+||.++|-+.+++|+++++-
T Consensus 19 ~Kvv~LedLA~~F~l~t~~~i~RI~~L 45 (72)
T 1wi9_A 19 SKVVLLEDLAFQMGLRTQDAINRIQDL 45 (72)
T ss_dssp CSEECHHHHHHHHCSCHHHHHHHHHHH
T ss_pred cCeeeHHHHHHHhCCChHHHHHHHHHH
Confidence 789999999999999999999988764
No 15
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=31.78 E-value=40 Score=20.24 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=20.3
Q ss_pred eehhhhHHHhccchHHHHHHHHHH
Q psy9436 114 CSVGRISHEVGWKYKTIVRHLERK 137 (188)
Q Consensus 114 ~tLGeLs~evGWKy~~vv~~LE~K 137 (188)
+++-+||.++|-.-+++++.|.+.
T Consensus 3 ~rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 3 VTIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp ECTTHHHHHHSSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHc
Confidence 357799999999999999999753
No 16
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=23.44 E-value=51 Score=23.22 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=19.2
Q ss_pred CCCCeeehhhhHHHhccchHHHHHHHH
Q psy9436 109 PGRSYCSVGRISHEVGWKYKTIVRHLE 135 (188)
Q Consensus 109 p~rKy~tLGeLs~evGWKy~~vv~~LE 135 (188)
..+.=.|.||+|-.+||-....-..||
T Consensus 14 s~~QGMTaGEVAA~f~w~Le~ar~aLe 40 (68)
T 3i71_A 14 SVRQGMTAGEVAAHFGWPLEKARNALE 40 (68)
T ss_dssp HCTTCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHhccccHHHHHHHhCCcHHHHHHHHH
Confidence 346778999999999998444333333
No 17
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=23.22 E-value=46 Score=23.16 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.3
Q ss_pred eeehhhhHHHhc----cchHH---HHHHHHHH
Q psy9436 113 YCSVGRISHEVG----WKYKT---IVRHLERK 137 (188)
Q Consensus 113 y~tLGeLs~evG----WKy~~---vv~~LE~K 137 (188)
=++.++|+..+| |.+.. ++++||++
T Consensus 24 ~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k 55 (126)
T 1sd4_A 24 SVSANEIVVEIQKYKEVSDKTIRTLITRLYKK 55 (126)
T ss_dssp SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHC
Confidence 389999999996 77665 67888887
No 18
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=21.44 E-value=99 Score=20.19 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=22.8
Q ss_pred CeeehhhhHHHhccchHHHHHHHHHHHH
Q psy9436 112 SYCSVGRISHEVGWKYKTIVRHLERKRR 139 (188)
Q Consensus 112 Ky~tLGeLs~evGWKy~~vv~~LE~KRK 139 (188)
.++++.+||..+|..-+.|...|..=+.
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5799999999999998888777665443
Done!