RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9438
(274 letters)
>2q2l_A Superoxide dismutase; SOD, SAD, antioxidant, oxidoreductase,
metal-binding; 2.37A {Potentilla atrosanguinea}
Length = 152
Score = 189 bits (481), Expect = 5e-61
Identities = 71/141 (50%), Positives = 90/141 (63%), Gaps = 5/141 (3%)
Query: 133 SGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQKQ 192
+G + F Q DG TV G ++GLK HGFH+H GD GC S G H+NP K+
Sbjct: 15 AGTILFTQEGDGPTTVTGNISGLKPG-----LHGFHVHALGDTTNGCMSTGPHFNPAGKE 69
Query: 193 HGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRGM 252
HG+P+ E RH GDLGNI G A F DK I LTGP+SI+GR ++VH+D DD G+G
Sbjct: 70 HGSPEDETRHAGDLGNITVGDDGTACFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKGG 129
Query: 253 FNDSTTTGHAGSRVACGVIGL 273
S +TG+AG R+ACG+IGL
Sbjct: 130 HELSKSTGNAGGRIACGIIGL 150
Score = 77.3 bits (191), Expect = 7e-18
Identities = 32/73 (43%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Query: 48 AVAVLRPYASSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDL 107
VAVL SS V +G + F Q DG TV G ++GLK HGFH+H GD
Sbjct: 4 GVAVLS---SSEGV---AGTILFTQEGDGPTTVTGNISGLKPG-----LHGFHVHALGDT 52
Query: 108 REGCASLGGHYNP 120
GC S G H+NP
Sbjct: 53 TNGCMSTGPHFNP 65
>2e47_A EA4, TIME interVal measuring enzyme TIME; motalloprotein,
glycoprotein, metal binding protein; HET: NAG MAN; 2.11A
{Bombyx mori} PDB: 2e46_A
Length = 156
Score = 185 bits (472), Expect = 1e-59
Identities = 68/144 (47%), Positives = 93/144 (64%), Gaps = 5/144 (3%)
Query: 131 SPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQ 190
+ GN+TF Q DG V V+G +TGL E+GFH+HEKGDL GC S G H+NP+
Sbjct: 18 TIRGNITFTQVQDGKVHVQGGITGLPPG-----EYGFHVHEKGDLSGGCLSTGSHFNPEH 72
Query: 191 KQHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGR 250
K HG P+ RH+GDLGN+ + + + D ISL+GP+ I+GR +++H DD+G+
Sbjct: 73 KDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK 132
Query: 251 GMFNDSTTTGHAGSRVACGVIGLV 274
DS TG+AG RVACGVIG++
Sbjct: 133 SDHPDSRKTGNAGGRVACGVIGIL 156
Score = 78.5 bits (194), Expect = 3e-18
Identities = 36/81 (44%), Positives = 46/81 (56%), Gaps = 12/81 (14%)
Query: 40 EDFAGKIVAVAVLRPYASSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGF 99
F A+AVL S+ ++ GN+TF Q DG V V+G +TGL E+GF
Sbjct: 2 HGFTTPSRAIAVL----STETI---RGNITFTQVQDGKVHVQGGITGLPPG-----EYGF 49
Query: 100 HIHEKGDLREGCASLGGHYNP 120
H+HEKGDL GC S G H+NP
Sbjct: 50 HVHEKGDLSGGCLSTGSHFNP 70
>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A
{Schistosoma mansoni} SCOP: b.1.8.1 PDB: 1to5_A 3mnd_A
Length = 156
Score = 184 bits (470), Expect = 3e-59
Identities = 68/142 (47%), Positives = 92/142 (64%), Gaps = 6/142 (4%)
Query: 133 SGNVTFIQH-DDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQK 191
G V F Q D+G V V +GLK +HGFH+HE GD GC S G H+NP ++
Sbjct: 17 KGVVKFTQETDNGPVHVHAEFSGLKAG-----KHGFHVHEFGDTTNGCTSAGAHFNPTKQ 71
Query: 192 QHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRG 251
+HGAP+ +RH+GDLGN+ A G A + DK+ISL G +SI+GR +++H ++DD GRG
Sbjct: 72 EHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRSMVIHENEDDLGRG 131
Query: 252 MFNDSTTTGHAGSRVACGVIGL 273
S TG+AG R+ACGV+GL
Sbjct: 132 GHELSKVTGNAGGRLACGVVGL 153
Score = 72.7 bits (179), Expect = 4e-16
Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 48 AVAVLRPYASSPSVTSPSGNVTFIQH-DDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGD 106
AV V+ + V G V F Q D+G V V +GLK +HGFH+HE GD
Sbjct: 6 AVCVMT---GTAGV---KGVVKFTQETDNGPVHVHAEFSGLKAG-----KHGFHVHEFGD 54
Query: 107 LREGCASLGGHYNP 120
GC S G H+NP
Sbjct: 55 TTNGCTSAGAHFNP 68
>3pu7_A Superoxide dismutase [CU-ZN], chloroplastic; oxidoreductase,
antioxidant, metal-binding, DIS bond, transit peptide;
1.80A {Solanum lycopersicum} PDB: 3km1_A 3km2_A 3mkg_A
3hog_A 1srd_A
Length = 154
Score = 184 bits (469), Expect = 3e-59
Identities = 73/141 (51%), Positives = 87/141 (61%), Gaps = 5/141 (3%)
Query: 133 SGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQKQ 192
G VT Q DDG TV +TGL HGFH+HE GD GC S G H+NP +
Sbjct: 16 EGVVTLSQDDDGPTTVNVRITGLAPG-----LHGFHLHEYGDTTNGCMSTGAHFNPNKLT 70
Query: 193 HGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRGM 252
HGAP E+RH GDLGNI A+ GVA D I LTGP S++GR L+VH +DD G+G
Sbjct: 71 HGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGG 130
Query: 253 FNDSTTTGHAGSRVACGVIGL 273
S TTG+AG R+ACGV+GL
Sbjct: 131 HELSLTTGNAGGRLACGVVGL 151
Score = 76.2 bits (188), Expect = 2e-17
Identities = 33/77 (42%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 48 AVAVLRPYASSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDL 107
AVAVL+ + +V G VT Q DDG TV +TGL HGFH+HE GD
Sbjct: 5 AVAVLK---GNSNV---EGVVTLSQDDDGPTTVNVRITGLAPG-----LHGFHLHEYGDT 53
Query: 108 REGCASLGGHYNPQQGN 124
GC S G H+NP +
Sbjct: 54 TNGCMSTGAHFNPNKLT 70
>3f7l_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide
acceptor), greek KEY beta-barrel, amyloid filaments,
ALS, FALS; 0.99A {Alvinella pompejana} PDB: 3f7k_A
Length = 152
Score = 181 bits (462), Expect = 4e-58
Identities = 71/141 (50%), Positives = 91/141 (64%), Gaps = 6/141 (4%)
Query: 133 SGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQKQ 192
+G + + D VTV G +TGL +HGFH+HE GD GC S GGH+NP K+
Sbjct: 15 TGTIHLKEEGDM-VTVTGEITGLTPG-----KHGFHVHEFGDNTNGCTSAGGHFNPHGKE 68
Query: 193 HGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRGM 252
HGAP+ E RH GDLGN+ A G A +DK++ LTGP S++GR L+VH D+DD GRG
Sbjct: 69 HGAPEDENRHAGDLGNVVAGEDGKAVINMKDKLVKLTGPDSVIGRTLVVHVDEDDLGRGG 128
Query: 253 FNDSTTTGHAGSRVACGVIGL 273
S TG+AG R+ACGVIG+
Sbjct: 129 HEQSKITGNAGGRLACGVIGI 149
Score = 71.2 bits (175), Expect = 1e-15
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 48 AVAVLRPYASSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDL 107
AV VL+ + +G + + D VTV G +TGL +HGFH+HE GD
Sbjct: 4 AVCVLK------GDSPVTGTIHLKEEGDM-VTVTGEITGLTPG-----KHGFHVHEFGDN 51
Query: 108 REGCASLGGHYNPQ 121
GC S GGH+NP
Sbjct: 52 TNGCTSAGGHFNPH 65
>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide
acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1
Length = 150
Score = 180 bits (459), Expect = 8e-58
Identities = 71/141 (50%), Positives = 88/141 (62%), Gaps = 6/141 (4%)
Query: 133 SGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQKQ 192
G V F Q D+G V+V+G + GL HGFHIH GD GC S G H+NP+ K
Sbjct: 14 KGVVHFEQQDEGAVSVEGKIEGLTDG-----LHGFHIHVFGDNTNGCMSAGSHFNPENKN 68
Query: 193 HGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRGM 252
HGAP RH+GDLGN+ A GVA F+ D +ISL GP SI+GR +VH DD G+G
Sbjct: 69 HGAPGDTDRHVGDLGNVTAE-GGVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKGG 127
Query: 253 FNDSTTTGHAGSRVACGVIGL 273
++S TG+AG R+ACGVIG
Sbjct: 128 NDESLKTGNAGGRLACGVIGY 148
Score = 76.6 bits (189), Expect = 1e-17
Identities = 44/133 (33%), Positives = 55/133 (41%), Gaps = 20/133 (15%)
Query: 48 AVAVLRPYASSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDL 107
AV VL S V G V F Q D+G V+V+G + GL HGFHIH GD
Sbjct: 3 AVCVLA---GSGDV---KGVVHFEQQDEGAVSVEGKIEGLTDG-----LHGFHIHVFGDN 51
Query: 108 REGCASLGGHYNPQQGNSSPSVTSPS-----GNVTFIQHDDGTVTVKGFVTGLKKNTAGS 162
GC S G H+NP+ N + GNVT + G K + + S
Sbjct: 52 TNGCMSAGSHFNPENKNHGAPGDTDRHVGDLGNVTA---EGGVAQFKITDSLISLKGPNS 108
Query: 163 QE-HGFHIHEKGD 174
+HEK D
Sbjct: 109 IIGRTAVVHEKAD 121
>1do5_A Human copper chaperone for superoxide dismutase domain II;
beta-barrel; 2.75A {Homo sapiens} SCOP: b.1.8.1
Length = 154
Score = 179 bits (456), Expect = 3e-57
Identities = 54/141 (38%), Positives = 75/141 (53%), Gaps = 8/141 (5%)
Query: 133 SGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQKQ 192
G V F+Q ++G + GL+ HG H+H+ GDL C S G H+NP
Sbjct: 17 QGVVRFLQLTPERCLIEGTIDGLEPG-----LHGLHVHQYGDLTNNCNSCGNHFNPDGAS 71
Query: 193 HGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRGM 252
HG P RH GDLGN+ A G A F ED+ + + + ++GR LI+ +DD GRG
Sbjct: 72 HGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKV---WDVIGRSLIIDEGEDDLGRGG 128
Query: 253 FNDSTTTGHAGSRVACGVIGL 273
S TG++G R+ACG+I
Sbjct: 129 HPLSKITGNSGERLACGIIAR 149
Score = 76.2 bits (188), Expect = 2e-17
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 48 AVAVLRPYASSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDL 107
AVA+L + G V F+Q ++G + GL+ HG H+H+ GDL
Sbjct: 6 AVAILG------GPGTVQGVVRFLQLTPERCLIEGTIDGLEPG-----LHGLHVHQYGDL 54
Query: 108 REGCASLGGHYNP 120
C S G H+NP
Sbjct: 55 TNNCNSCGNHFNP 67
>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide,
oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP:
b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A
1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A
Length = 154
Score = 178 bits (453), Expect = 9e-57
Identities = 68/142 (47%), Positives = 89/142 (62%), Gaps = 5/142 (3%)
Query: 133 SGNVTFIQHDDGT-VTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQK 191
SG V F Q + TV + G N E GFHIHE GD GC S G H+NP +K
Sbjct: 15 SGVVKFEQASESEPTTVSYEIAGNSPNA----ERGFHIHEFGDATNGCVSAGPHFNPFKK 70
Query: 192 QHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRG 251
HGAP EVRH+GD+GN++ +GVA F+D +I L GP S++GR +++H+ +DD G+G
Sbjct: 71 THGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKG 130
Query: 252 MFNDSTTTGHAGSRVACGVIGL 273
+S TG+AG R ACGVIGL
Sbjct: 131 DTEESLKTGNAGPRPACGVIGL 152
Score = 72.8 bits (179), Expect = 4e-16
Identities = 30/74 (40%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 48 AVAVLRPYASSPSVTSPSGNVTFIQHDDGT-VTVKGFVTGLKKNTAGSQEHGFHIHEKGD 106
AVAVL+ V+ G V F Q + TV + G N E GFHIHE GD
Sbjct: 4 AVAVLK---GDAGVS---GVVKFEQASESEPTTVSYEIAGNSPNA----ERGFHIHEFGD 53
Query: 107 LREGCASLGGHYNP 120
GC S G H+NP
Sbjct: 54 ATNGCVSAGPHFNP 67
>3ce1_A Superoxide dismutase [CU-ZN]; greek-KEY beta barrel, antioxidant,
copper, metal-binding, oxidoreductase, zinc; 1.20A
{Cryptococcus liquefaciens}
Length = 168
Score = 178 bits (454), Expect = 1e-56
Identities = 63/142 (44%), Positives = 87/142 (61%), Gaps = 5/142 (3%)
Query: 133 SGNVTFIQHDDGT-VTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQK 191
G +TF Q G VTV G + + N + GFH+H+ GD GC S G H+NP
Sbjct: 18 QGVITFTQESSGGPVTVSGEIKNMDANA----QRGFHVHQFGDNSNGCTSAGPHFNPTGT 73
Query: 192 QHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRG 251
HG EVRH+GDLGN++ SGVA + D +SL GP+SI+GR +++H+ +DD G+
Sbjct: 74 NHGDRTAEVRHVGDLGNVKTDASGVAKVQISDSQLSLVGPHSIIGRTIVIHAGEDDLGKT 133
Query: 252 MFNDSTTTGHAGSRVACGVIGL 273
+S TG+AG+R ACGVIG+
Sbjct: 134 DHPESLKTGNAGARSACGVIGI 155
Score = 73.2 bits (180), Expect = 3e-16
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 43 AGKIVAVAVLRPYASSPSVTSPSGNVTFIQHDDGT-VTVKGFVTGLKKNTAGSQEHGFHI 101
+ I A+AVL+ V G +TF Q G VTV G + + N + GFH+
Sbjct: 2 SSTIKAIAVLK---GDSPV---QGVITFTQESSGGPVTVSGEIKNMDANA----QRGFHV 51
Query: 102 HEKGDLREGCASLGGHYNPQ 121
H+ GD GC S G H+NP
Sbjct: 52 HQFGDNSNGCTSAGPHFNPT 71
>2wyt_A Superoxide dismutase [CU-ZN]; oxidoreductase, disease mutation,
amyotrophic lateral sclero antioxidant; HET: SO4; 1.00A
{Homo sapiens} PDB: 2wyz_A* 2wz0_A* 2wz5_A* 1hl4_A
1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A*
3ecu_A 3kh3_A 3kh4_A 3re0_A 2wko_A 3gzo_A 2wz6_A* 3gzp_A
1uxl_A ...
Length = 153
Score = 176 bits (449), Expect = 3e-56
Identities = 68/142 (47%), Positives = 89/142 (62%), Gaps = 6/142 (4%)
Query: 133 SGNVTFIQH-DDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQK 191
G + F Q +G V V G + G+ + HGFH+HE GD GC S G H+NP +
Sbjct: 15 QGIINFEQKESNGPVKVWGSIKGVTEG-----LHGFHVHEFGDNTAGCTSAGPHFNPLSR 69
Query: 192 QHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRG 251
+HG P E RH+GDLGN+ A GVA ED +ISL+G + I+GR L+VH DD G+G
Sbjct: 70 KHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKG 129
Query: 252 MFNDSTTTGHAGSRVACGVIGL 273
+ST TG+AGSR+ACGVIG+
Sbjct: 130 GNEESTKTGNAGSRLACGVIGI 151
Score = 70.8 bits (174), Expect = 2e-15
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 48 AVAVLRPYASSPSVTSPSGNVTFIQH-DDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGD 106
AV VL+ V G + F Q +G V V G + G+ + HGFH+HE GD
Sbjct: 4 AVCVLK---GDGPV---QGIINFEQKESNGPVKVWGSIKGVTEG-----LHGFHVHEFGD 52
Query: 107 LREGCASLGGHYNP 120
GC S G H+NP
Sbjct: 53 NTAGCTSAGPHFNP 66
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase,
antioxidant, oxidoreductase, NEM disulfide bond,
metal-binding; 1.10A {Caenorhabditis elegans} PDB:
3kbf_A
Length = 157
Score = 176 bits (447), Expect = 7e-56
Identities = 60/145 (41%), Positives = 87/145 (60%), Gaps = 9/145 (6%)
Query: 133 SGNVTFIQHDDGT-VTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQK 191
+G + Q + ++G + GL HGFH+H+ GD GC S G H+NP K
Sbjct: 14 TGTIWITQKSENDQAVIEGEIKGLTPG-----LHGFHVHQYGDSTNGCISAGPHFNPFGK 68
Query: 192 QHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRG 251
HG P E+RH+GDLGN+EA GVA + D +++L GP +++GR ++VH+ +DD G G
Sbjct: 69 THGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEG 128
Query: 252 MFND---STTTGHAGSRVACGVIGL 273
+ + S TG+AG+R ACGVI L
Sbjct: 129 VGDKAEESKKTGNAGARAACGVIAL 153
Score = 71.6 bits (176), Expect = 1e-15
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 48 AVAVLRPYASSPSVTSPSGNVTFIQHDDGT-VTVKGFVTGLKKNTAGSQEHGFHIHEKGD 106
AVAVLR +V +G + Q + ++G + GL HGFH+H+ GD
Sbjct: 4 AVAVLR----GETV---TGTIWITQKSENDQAVIEGEIKGLTPG-----LHGFHVHQYGD 51
Query: 107 LREGCASLGGHYNP 120
GC S G H+NP
Sbjct: 52 STNGCISAGPHFNP 65
>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel,
antioxidant, copper, cytoplasm, metal- binding,
oxidoreductase; 1.80A {Bombyx mori} PDB: 3l9e_A
Length = 154
Score = 175 bits (445), Expect = 1e-55
Identities = 76/143 (53%), Positives = 91/143 (63%), Gaps = 7/143 (4%)
Query: 133 SGNVTFIQHDDGT-VTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQK 191
SG V F Q D+ + V V G V GL K +HGFH+HE GD GC S G H+NP+++
Sbjct: 14 SGTVFFDQQDEKSPVVVSGEVQGLTKG-----KHGFHVHEFGDNTNGCTSAGAHFNPEKQ 68
Query: 192 QHGAPDHEVRHIGDLGNIEASPS-GVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGR 250
HG P VRH+GDLGNIEA GV +D ISL GP SI+GR L+VH+D DD G
Sbjct: 69 DHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGL 128
Query: 251 GMFNDSTTTGHAGSRVACGVIGL 273
G S TTG+AG R+ACGVIGL
Sbjct: 129 GGNELSKTTGNAGGRIACGVIGL 151
Score = 72.8 bits (179), Expect = 4e-16
Identities = 33/74 (44%), Positives = 38/74 (51%), Gaps = 14/74 (18%)
Query: 48 AVAVLRPYASSPSVTSPSGNVTFIQHDDGT-VTVKGFVTGLKKNTAGSQEHGFHIHEKGD 106
AV VLR SG V F Q D+ + V V G V GL K +HGFH+HE GD
Sbjct: 5 AVCVLRG--------DVSGTVFFDQQDEKSPVVVSGEVQGLTKG-----KHGFHVHEFGD 51
Query: 107 LREGCASLGGHYNP 120
GC S G H+NP
Sbjct: 52 NTNGCTSAGAHFNP 65
>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD,
SOD-like, superoxide dismutase mutants, STRU genomics,
unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B
1s4i_B 1u3n_A
Length = 175
Score = 157 bits (400), Expect = 2e-48
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 131 SPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDL-REGCASLGGHYNPQ 189
G + + DD + + L+ GFHIHEKG R S GGH+NP
Sbjct: 32 KAVGFIEIKESDDEGLDIHISANSLRPG----ASLGFHIHEKGSCVRPDFESAGGHFNPL 87
Query: 190 QKQHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGP-----YSILGRGLIVHSD 244
K+HG + H GDL N+E G SL G I+H
Sbjct: 88 NKEHGFNNPMGHHAGDLPNLEVGADGKVDVIMNAPDTSLKKGSKLNILDEDGSAFIIHEQ 147
Query: 245 KDDFGRGMFNDSTTTGHAGSRVACGVIG 272
DD+ + +G++G+R+ CG +
Sbjct: 148 ADDYL------TNPSGNSGARIVCGALL 169
Score = 66.6 bits (163), Expect = 9e-14
Identities = 30/144 (20%), Positives = 42/144 (29%), Gaps = 24/144 (16%)
Query: 43 AGKIVAVAVLRPYASSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIH 102
+ V ++ G + + DD + + L+ GFHIH
Sbjct: 18 SAFGHHVQLV------NREGKAVGFIEIKESDDEGLDIHISANSLRPG----ASLGFHIH 67
Query: 103 EKGDL-REGCASLGGHYNPQQGN-SSPSVTSPS----GNVTFIQHDDGTVTVKGFVTGLK 156
EKG R S GGH+NP + N+ DG V V
Sbjct: 68 EKGSCVRPDFESAGGHFNPLNKEHGFNNPMGHHAGDLPNLEV--GADGKVDVIMNAPDTS 125
Query: 157 KNTAGSQE------HGFHIHEKGD 174
F IHE+ D
Sbjct: 126 LKKGSKLNILDEDGSAFIIHEQAD 149
>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant,
metal binding, greek KEY barrel, oxidoreductase; 1.63A
{Mycobacterium tuberculosis} SCOP: b.1.8.1
Length = 208
Score = 156 bits (396), Expect = 2e-47
Identities = 40/160 (25%), Positives = 56/160 (35%), Gaps = 21/160 (13%)
Query: 131 SPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCA-----SLGGH 185
+ F + TV TG+ K T G HG HIH+ G + G
Sbjct: 50 TKVATAKFEFANGY-ATVTIATTGVGKLTPG--FHGLHIHQVGKCEPNSVAPTGGAPGNF 106
Query: 186 YNPQQKQHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDK 245
+ H GDL +++ G A ++ S +I+H+
Sbjct: 107 LSAGGHYHVPGHTGTPASGDLASLQVRGDGSAMLVTTTDAFTMDDLLSGAKTAIIIHAGA 166
Query: 246 DDFGR-------------GMFNDSTTTGHAGSRVACGVIG 272
D+F G + TTG AG RVACGVIG
Sbjct: 167 DNFANIPPERYVQVNGTPGPDETTLTTGDAGKRVACGVIG 206
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric
superoxide dismutase, copper enzymes, enzyme evolution,
X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB:
2k4w_A
Length = 154
Score = 153 bits (388), Expect = 5e-47
Identities = 41/148 (27%), Positives = 55/148 (37%), Gaps = 20/148 (13%)
Query: 132 PSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLRE--------GCASLG 183
G+VT + D G + + L EHGFHIH KG + S G
Sbjct: 18 SIGSVTITETDKG-LEFSPDLKALPPG-----EHGFHIHAKGSCQPATKDGKASAAESAG 71
Query: 184 GHYNPQQKQHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHS 243
GH +PQ H+GDL + + G A+ L I + L+VH
Sbjct: 72 GHLDPQNTGKHEGPEGAGHLGDLPALVVNNDGKATDAVIAP--RLKSLDEIKDKALMVHV 129
Query: 244 DKDDFGRGMFNDSTTTGHAGSRVACGVI 271
D+ + G G R ACGVI
Sbjct: 130 GGDNMS----DQPKPLGGGGERYACGVI 153
Score = 63.9 bits (156), Expect = 7e-13
Identities = 36/158 (22%), Positives = 54/158 (34%), Gaps = 31/158 (19%)
Query: 43 AGKIVAVAVLRPYASSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIH 102
A + V + ++ S+ G+VT + D G + + L EHGFHIH
Sbjct: 1 ASEKVEMNLVTSQGVGQSI----GSVTITETDKG-LEFSPDLKALPPG-----EHGFHIH 50
Query: 103 EKGDLRE--------GCASLGGHYNPQ-QGNSSPSVTSPS----GNVTFIQHDDGTVTVK 149
KG + S GGH +PQ G + + ++DG T
Sbjct: 51 AKGSCQPATKDGKASAAESAGGHLDPQNTGKHEGPEGAGHLGDLPALVV--NNDGKATDA 108
Query: 150 GFVTGLK--KNTAGSQEHGFHIHEKGD-LREGCASLGG 184
LK +H GD + + LGG
Sbjct: 109 VIAPRLKSLDEIKD---KALMVHVGGDNMSDQPKPLGG 143
>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella
abortus}
Length = 154
Score = 151 bits (384), Expect = 2e-46
Identities = 40/149 (26%), Positives = 53/149 (35%), Gaps = 20/149 (13%)
Query: 131 SPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREG--------CASL 182
G V + G + K + L HGFH+HE G +
Sbjct: 17 KEVGTVVISEAPGG-LHFKVNMEKLTPG-----YHGFHVHENPSCAPGEKDGKIVPALAA 70
Query: 183 GGHYNPQQKQHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVH 242
GGHY+P H H+GDL + A+ G S L I R L+VH
Sbjct: 71 GGHYDPGNTHHHLGPEGDGHMGDLPRLSANADGKVSETVVA--PHLKKLAEIKQRSLMVH 128
Query: 243 SDKDDFGRGMFNDSTTTGHAGSRVACGVI 271
D++ G G+R ACGVI
Sbjct: 129 VGGDNYSDK----PEPLGGGGARFACGVI 153
Score = 59.2 bits (144), Expect = 3e-11
Identities = 27/125 (21%), Positives = 41/125 (32%), Gaps = 22/125 (17%)
Query: 63 SPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREG--------CASL 114
G V + G + K + L HGFH+HE G +
Sbjct: 17 KEVGTVVISEAPGG-LHFKVNMEKLTPG-----YHGFHVHENPSCAPGEKDGKIVPALAA 70
Query: 115 GGHYNPQ-QGNSSPSVTSPS----GNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHI 169
GGHY+P + ++ + DG V+ LKK A ++ +
Sbjct: 71 GGHYDPGNTHHHLGPEGDGHMGDLPRLSA--NADGKVSETVVAPHLKK-LAEIKQRSLMV 127
Query: 170 HEKGD 174
H GD
Sbjct: 128 HVGGD 132
>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase;
2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB:
2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A*
Length = 156
Score = 149 bits (379), Expect = 1e-45
Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 21/150 (14%)
Query: 131 SPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREG--------CASL 182
G +T + G + + GL HGFH+H G
Sbjct: 17 ENIGEITVSETPYG-LLFTPHLNGLTPG-----IHGFHVHTNPSCMPGMKDGKEVPALMA 70
Query: 183 GGHYNPQ-QKQHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIV 241
GGH +P+ +H P ++ H+GDL + + G A++ L + G L++
Sbjct: 71 GGHLDPEKTGKHLGPYNDKGHLGDLPGLVVNADGTATYPLLA--PRLKSLSELKGHSLMI 128
Query: 242 HSDKDDFGRGMFNDSTTTGHAGSRVACGVI 271
H D++ G G+R ACGVI
Sbjct: 129 HKGGDNYSDK----PAPLGGGGARFACGVI 154
Score = 62.3 bits (152), Expect = 3e-12
Identities = 31/139 (22%), Positives = 44/139 (31%), Gaps = 28/139 (20%)
Query: 63 SPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREG--------CASL 114
G +T + G + + GL HGFH+H G
Sbjct: 17 ENIGEITVSETPYG-LLFTPHLNGLTPG-----IHGFHVHTNPSCMPGMKDGKEVPALMA 70
Query: 115 GGHYNPQQGNSSPSVTSPS------GNVTFIQHDDGTVTVKGFVTGLK--KNTAGSQEHG 166
GGH +P++ + + + DGT T LK G H
Sbjct: 71 GGHLDPEKTGKHLGPYNDKGHLGDLPGLVV--NADGTATYPLLAPRLKSLSELKG---HS 125
Query: 167 FHIHEKGD-LREGCASLGG 184
IH+ GD + A LGG
Sbjct: 126 LMIHKGGDNYSDKPAPLGG 144
>2aqp_A Superoxide dismutase [CU-ZN]; electrostatic guidance, neisseria
MENI oxidoreductase; 1.30A {Neisseria meningitidis} PDB:
2aqn_A 2aqr_A 2aqq_A 2aqt_C 2aqs_A 2aps_A 1z9p_A
Length = 164
Score = 149 bits (378), Expect = 2e-45
Identities = 40/149 (26%), Positives = 59/149 (39%), Gaps = 21/149 (14%)
Query: 132 PSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDL--------REGCASLG 183
G VT + + G + + GL HGFHIHE G
Sbjct: 27 DVGTVTITESNYG-LVFTPDLQGLSAG-----LHGFHIHENPSCEPKEKEGKLTAGLGAG 80
Query: 184 GHYNPQ-QKQHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVH 242
GH++P+ KQHG P + H+GDL + G A+ L + G +++H
Sbjct: 81 GHWDPKGAKQHGYPWQDDAHLGDLPALTVLHDGTATNPVLAP--RLKHLDDVRGHSIMIH 138
Query: 243 SDKDDFGRGMFNDSTTTGHAGSRVACGVI 271
+ D+ + G G R+ACGVI
Sbjct: 139 TGGDNHS----DHPAPLGGGGPRMACGVI 163
Score = 63.5 bits (155), Expect = 1e-12
Identities = 40/159 (25%), Positives = 51/159 (32%), Gaps = 32/159 (20%)
Query: 43 AGKIVAVAVLRPYASSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIH 102
A V V L P + V G VT + + G + + GL HGFHIH
Sbjct: 10 ASIEVKVQQLDPVNGNKDV----GTVTITESNYG-LVFTPDLQGLSAG-----LHGFHIH 59
Query: 103 EKGDL--------REGCASLGGHYNPQQGNSSPSVTSPS------GNVTFIQHDDGTVTV 148
E GGH++P+ +T DGT T
Sbjct: 60 ENPSCEPKEKEGKLTAGLGAGGHWDPKGAKQHGYPWQDDAHLGDLPALTV--LHDGTATN 117
Query: 149 KGFVTGLK--KNTAGSQEHGFHIHEKGD-LREGCASLGG 184
LK + G H IH GD + A LGG
Sbjct: 118 PVLAPRLKHLDDVRG---HSIMIHTGGDNHSDHPAPLGG 153
>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation,
oxidoreductase, heparin binding, heparin-BIND oxidative
stress, antioxidant; 1.70A {Homo sapiens}
Length = 222
Score = 149 bits (377), Expect = 1e-44
Identities = 50/142 (35%), Positives = 67/142 (47%), Gaps = 9/142 (6%)
Query: 133 SGNVTFIQHDDGT-VTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQK 191
+G V F Q + + G S H+H+ GDL +GC S G HYNP
Sbjct: 61 TGVVLFRQLAPRAKLDAFFALEGFPTEPN-SSSRAIHVHQFGDLSQGCESTGPHYNPLAV 119
Query: 192 QHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRG 251
H +H GD GN G SL GP+SI+GR ++VH+ +DD GRG
Sbjct: 120 PHP------QHPGDFGNFAV-RDGSLWRYRAGLAASLAGPHSIVGRAVVVHAGEDDLGRG 172
Query: 252 MFNDSTTTGHAGSRVACGVIGL 273
S G+AG R+AC V+G+
Sbjct: 173 GNQASVENGNAGRRLACCVVGV 194
Score = 70.5 bits (172), Expect = 1e-14
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 7/112 (6%)
Query: 39 SEDFAGKIVAVAVLRPYASSPSVTSP-SGNVTFIQHDDGT-VTVKGFVTGLKKNTAGSQE 96
D G + A ++P A+ + +G V F Q + + G S
Sbjct: 34 RRDDDGTLHAACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPN-SSS 92
Query: 97 HGFHIHEKGDLREGCASLGGHYNPQQGNSSPSVTSPSGNVTFIQHDDGTVTV 148
H+H+ GDL +GC S G HYNP G+ DG++
Sbjct: 93 RAIHVHQFGDLSQGCESTGPHYNPLAVPHPQ----HPGDFGNFAVRDGSLWR 140
>1oal_A Superoxide dismutase; oxidoreductase, prokaryotic Cu,
protein-subunit interaction recognition, protein
electrostatic; 1.5A {Photobacterium leiognathi} SCOP:
b.1.8.1 PDB: 1bzo_A 1ibh_A 1ibd_A 1yai_A 1ib5_A 1oaj_A
1ibb_A 1ibf_A
Length = 151
Score = 146 bits (371), Expect = 2e-44
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 22/150 (14%)
Query: 131 SPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREG--------CASL 182
P G + Q+ G V + L EHGFHIH+ G +
Sbjct: 14 KPVGTIELSQNKYG-VVFIPELADLTPG-----EHGFHIHQNGSCASSEKDGKVVLGGAA 67
Query: 183 GGHYNPQQ-KQHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIV 241
GGHY+P+ +HG P + H GDL + S +G+A+ ++L + G +++
Sbjct: 68 GGHYDPEHTNKHGFPWTDDNHKGDLPALFVSANGLATNPVLAPRLTLK---ELKGHAIMI 124
Query: 242 HSDKDDFGRGMFNDSTTTGHAGSRVACGVI 271
H+ D+ + G G+RVACGVI
Sbjct: 125 HAGGDNHS----DMPKALGGGGARVACGVI 150
Score = 60.8 bits (148), Expect = 9e-12
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 56 ASSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREG----- 110
+ P G + Q+ G V + L EHGFHIH+ G
Sbjct: 7 MTDLQTGKPVGTIELSQNKYG-VVFIPELADLTPG-----EHGFHIHQNGSCASSEKDGK 60
Query: 111 ---CASLGGHYNPQQGN 124
+ GGHY+P+ N
Sbjct: 61 VVLGGAAGGHYDPEHTN 77
>1z9n_A Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxidoreductase; HET:
HEM; 1.50A {Haemophilus ducreyi}
Length = 177
Score = 146 bits (370), Expect = 5e-44
Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 21/149 (14%)
Query: 132 PSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCA--------SLG 183
G V + G + + L HGFHIHEK G
Sbjct: 40 DVGTVEITESAYG-LVFTPKLHDLAHG-----LHGFHIHEKPSCEPKEKDGKLVAGLGAG 93
Query: 184 GHYNPQQ-KQHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVH 242
GH++P+Q ++HG P + H+GDL + G A+ L + G L++H
Sbjct: 94 GHWDPKQTQKHGYPWSDDAHMGDLPALFVMHDGSATTPVLAP--RLKKLAEVKGHSLMIH 151
Query: 243 SDKDDFGRGMFNDSTTTGHAGSRVACGVI 271
+ D+ + G G R+ACGVI
Sbjct: 152 AGGDNHS----DHPAPLGGGGPRMACGVI 176
>1ej8_A Lys7; beta barrel, copper chaperone for SOD, domain 2; 1.55A
{Saccharomyces cerevisiae} SCOP: b.1.8.1
Length = 140
Score = 119 bits (299), Expect = 6e-34
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 24/139 (17%)
Query: 133 SGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQKQ 192
G +Q + V G+ + + IHEKGD+ +G S G ++ +
Sbjct: 24 RGLARIVQVGENKTLFDITVNGVPEAG----NYHASIHEKGDVSKGVESTGKVWHKFDEP 79
Query: 193 HGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRGM 252
+ DLG + + F + + ++GR ++ +
Sbjct: 80 IEC-----FNESDLGK-----NLYSGKTFLSAPLPT---WQLIGRSFVISKSLNHPENE- 125
Query: 253 FNDSTTTGHAGSRVACGVI 271
GVI
Sbjct: 126 ------PSSVKDYSFLGVI 138
Score = 71.0 bits (174), Expect = 1e-15
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 48 AVAVLRPYASSPSVTSP----SGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHE 103
AVA+L + G +Q + V G+ + + IHE
Sbjct: 3 AVAILETFQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAG----NYHASIHE 58
Query: 104 KGDLREGCASLGGHYNP 120
KGD+ +G S G ++
Sbjct: 59 KGDVSKGVESTGKVWHK 75
>1qup_A Superoxide dismutase 1 copper chaperone; two domains,
beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A
{Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Length = 222
Score = 117 bits (293), Expect = 5e-32
Identities = 29/203 (14%), Positives = 58/203 (28%), Gaps = 26/203 (12%)
Query: 71 IQHDDGTVTVKGFVTGLK-KNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQGNSSPSV 129
+ ++V+ V NT + I G ++ + +
Sbjct: 38 FDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKPNSSAVAILETFQKYTIDQ-KKD 96
Query: 130 TSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQ 189
T+ G +Q + V G+ + + IHEKGD+ +G S G ++
Sbjct: 97 TAVRGLARIVQVGENKTLFDITVNGVPEAG----NYHASIHEKGDVSKGVESTGKVWHKF 152
Query: 190 QKQHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFG 249
+ + DLG + F + + ++GR ++ +
Sbjct: 153 DEPIE-----CFNESDLGKN-----LYSGKTFLSAPLPT---WQLIGRSFVISKSLNHPE 199
Query: 250 RGMFNDSTTTGHAGSRVACGVIG 272
GVI
Sbjct: 200 NE-------PSSVKDYSFLGVIA 215
Score = 60.1 bits (145), Expect = 4e-11
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 56 ASSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLG 115
T+ G +Q + V G+ + + IHEKGD+ +G S G
Sbjct: 91 IDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAG----NYHASIHEKGDVSKGVESTG 146
Query: 116 GHYNPQQGNSSPSVTSPSGNV 136
++ S G
Sbjct: 147 KVWHKFDEPIECFNESDLGKN 167
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein
complex, heterodimer, metallochaperone, amyotrophic
lateral sclerosis; 2.90A {Saccharomyces cerevisiae}
SCOP: b.1.8.1 d.58.17.1
Length = 249
Score = 116 bits (290), Expect = 2e-31
Identities = 29/203 (14%), Positives = 58/203 (28%), Gaps = 26/203 (12%)
Query: 71 IQHDDGTVTVKGFVTGLK-KNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQGNSSPSV 129
+ ++V+ V NT + I G ++ + +
Sbjct: 39 FDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKPNSSAVAILETFQKYTIDQ-KKD 97
Query: 130 TSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQ 189
T+ G +Q + V G+ + + IHEKGD+ +G S G ++
Sbjct: 98 TAVRGLARIVQVGENKTLFDITVNGVPEAG----NYHASIHEKGDVSKGVESTGKVWHKF 153
Query: 190 QKQHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFG 249
+ + DLG + F + + ++GR ++ +
Sbjct: 154 DEPIE-----CFNESDLGKN-----LYSGKTFLSAPLPT---WQLIGRSFVISKSLNHPE 200
Query: 250 RGMFNDSTTTGHAGSRVACGVIG 272
GVI
Sbjct: 201 NE-------PSSVKDYSFLGVIA 216
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.011
Identities = 36/227 (15%), Positives = 67/227 (29%), Gaps = 83/227 (36%)
Query: 55 YASSPSVTSPSGNVTFIQHDDGTVTVKGF-VTGLKKNTAGSQEHGFHIHEKG----DLRE 109
Y +S + + + D+ GF + + N + IH G +RE
Sbjct: 1636 YKTSKAAQD-----VWNRADNHFKDTYGFSILDIVINNPVN----LTIHFGGEKGKRIRE 1686
Query: 110 GCASLGGHYNPQQGNSS----PSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQ-- 163
+++ + + S + TF + + G ++ + T Q
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF-RSEKGLLS-------ATQFT---QPA 1735
Query: 164 ---------EHGFHIHEKGDLREGCASLGGHYNPQQKQHGAPDHEVRHIGDLGNIE---- 210
E + KG L A+ GH LG E
Sbjct: 1736 LTLMEKAAFED---LKSKG-LIPADATFAGH-------------------SLG--EYAAL 1770
Query: 211 ASPSGVASFEFED--KIISLTGPYSILGRGLIVHS--DKDDFGRGMF 253
AS + V E +++ RG+ + +D+ GR +
Sbjct: 1771 ASLADV--MSIESLVEVVFY--------RGMTMQVAVPRDELGRSNY 1807
Score = 32.7 bits (74), Expect = 0.14
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 26/96 (27%)
Query: 167 FHIHEKGDLREGCASLGGHYNPQQKQH-----GAPDHEVRHIGDLGNIEASPSGVASFEF 221
+ + DLR S+ + + HI D G P G +
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG-----PGGASG--- 511
Query: 222 EDKIISLTGPYSIL-GRG--LIV-----HSDKDDFG 249
+ LT + G G +IV + DD+G
Sbjct: 512 ---LGVLT--HRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 27.7 bits (61), Expect = 5.4
Identities = 49/300 (16%), Positives = 84/300 (28%), Gaps = 94/300 (31%)
Query: 5 FIIYLGVVVLEIERSIMWTTLAPVFFSFLVVQVLSEDFAGKIVAVAVLRPYASSPSVTSP 64
+ G +E + L P SF + L E F P T
Sbjct: 9 LTLSHG----SLEHVL----LVPTA-SFFIASQLQEQFN------------KILPEPTE- 46
Query: 65 SGNVTFIQHDDGTVTVK------GFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHY 118
F D+ T + G+V+ L + + G + +
Sbjct: 47 ----GFAADDEPTTPAELVGKFLGYVSSLVEP-----------SKVGQFDQVLNLCLTEF 91
Query: 119 NPQ--QGNSSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGD-- 174
+GN ++ + +Q +D T+ + +K +K +
Sbjct: 92 ENCYLEGNDIHALAA-----KLLQENDTTLVKTKEL--IKNYITARIMAKRPFDKKSNSA 144
Query: 175 ----LREGCASL----GGHYNPQQKQHGAPDH---EVRHIGDLGNIEASPSGVASFEFED 223
+ EG A L GG Q G D E+R + + V
Sbjct: 145 LFRAVGEGNAQLVAIFGG----Q----GNTDDYFEELRDLY-----QTYHVLVGDL---- 187
Query: 224 KIISLTGPYSILGRGLIVHSDKDDFGRGM------FNDSTTTGH---AGSRVACGVIGLV 274
I S L R + F +G+ N S T ++C +IG++
Sbjct: 188 -IKFSAETLSELIRT--TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Length = 92
Score = 27.3 bits (61), Expect = 1.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 59 PSVTSPSGNVTFIQHDDGTVTVK 81
P+V G+V + +DG V +K
Sbjct: 28 PTVQEDGGDVIYRGFEDGIVRLK 50
Score = 27.3 bits (61), Expect = 1.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 127 PSVTSPSGNVTFIQHDDGTVTVK 149
P+V G+V + +DG V +K
Sbjct: 28 PTVQEDGGDVIYRGFEDGIVRLK 50
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program
for RICE genome research, unknown function; NMR {Oryza
sativa} SCOP: d.52.8.1
Length = 74
Score = 26.5 bits (59), Expect = 2.3
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 52 LRPYASSPSVTSPSGNVTFIQHDDGTVTVK 81
+RPY + G + F+ V V+
Sbjct: 16 IRPYL----AGTGGGGLQFLMIKGPIVKVR 41
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal
fluid protein, CUB domain, X-RAY growth factor; 1.90A
{Bos taurus} SCOP: b.23.1.1
Length = 114
Score = 27.3 bits (61), Expect = 2.8
Identities = 4/30 (13%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 123 GNSSPSVTSPSGNVTFIQ-HDDGTVTVKGF 151
S S SG++ ++ + +
Sbjct: 76 EGSLMDYRS-SGSIMTVKYIREPEHPASFY 104
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural
genomics, protein structur initiative, NESG, PSI; NMR
{Staphylococcus epidermidis} SCOP: d.52.8.1
Length = 88
Score = 26.1 bits (58), Expect = 4.4
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 59 PSVTSPSGNVTFIQHDDGTVTVK 81
P + G+ T + +DG V ++
Sbjct: 21 PFLLRDGGDCTLVDVEDGIVKLQ 43
Score = 26.1 bits (58), Expect = 4.4
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 127 PSVTSPSGNVTFIQHDDGTVTVK 149
P + G+ T + +DG V ++
Sbjct: 21 PFLLRDGGDCTLVDVEDGIVKLQ 43
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster
biosynthesis, metal transport; 1.35A {Arabidopsis
thaliana} PDB: 2jnv_A
Length = 154
Score = 26.7 bits (59), Expect = 5.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 59 PSVTSPSGNVTFIQHDDGTVTVK 81
P + S GNV + D V VK
Sbjct: 18 PYLMSDGGNVALHEIDGNVVRVK 40
Score = 26.7 bits (59), Expect = 5.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 127 PSVTSPSGNVTFIQHDDGTVTVK 149
P + S GNV + D V VK
Sbjct: 18 PYLMSDGGNVALHEIDGNVVRVK 40
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex (seminal
plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Length = 116
Score = 25.8 bits (57), Expect = 8.7
Identities = 4/30 (13%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 123 GNSSPSVTSPSGNVTFIQ-HDDGTVTVKGF 151
++ S + N I+ + + F
Sbjct: 75 AGAAIVFLS-TANTMTIKYNRISGNSSSPF 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.408
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,362,779
Number of extensions: 271266
Number of successful extensions: 766
Number of sequences better than 10.0: 1
Number of HSP's gapped: 654
Number of HSP's successfully gapped: 65
Length of query: 274
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 182
Effective length of database: 4,133,061
Effective search space: 752217102
Effective search space used: 752217102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)