RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9438
(274 letters)
>d2c9va1 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD {Human
(Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 131 bits (330), Expect = 7e-39
Identities = 69/142 (48%), Positives = 90/142 (63%), Gaps = 6/142 (4%)
Query: 133 SGNVTFIQHD-DGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQK 191
G + F Q + +G V V G + GL + HGFH+HE GD GC S G H+NP +
Sbjct: 15 QGIINFEQKESNGPVKVWGSIKGLTEGL-----HGFHVHEFGDNTAGCTSAGPHFNPLSR 69
Query: 192 QHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRG 251
+HG P E RH+GDLGN+ A GVA ED +ISL+G + I+GR L+VH DD G+G
Sbjct: 70 KHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKG 129
Query: 252 MFNDSTTTGHAGSRVACGVIGL 273
+ST TG+AGSR+ACGVIG+
Sbjct: 130 GNEESTKTGNAGSRLACGVIGI 151
Score = 51.6 bits (123), Expect = 7e-09
Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 16/132 (12%)
Query: 48 AVAVLRPYASSPSVTSPSGNVTFIQHD-DGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGD 106
AV VL+ V G + F Q + +G V V G + GL + HGFH+HE GD
Sbjct: 4 AVCVLK---GDGPV---QGIINFEQKESNGPVKVWGSIKGLTEGL-----HGFHVHEFGD 52
Query: 107 LREGCASLGGHYNPQQGNSS--PSVTSPSGNV-TFIQHDDGTVTVKGFVTGLKKNTAGS- 162
GC S G H+NP G++ DG V + + +
Sbjct: 53 NTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCI 112
Query: 163 QEHGFHIHEKGD 174
+HEK D
Sbjct: 113 IGRTLVVHEKAD 124
>d1f1ga_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 153
Score = 130 bits (329), Expect = 1e-38
Identities = 68/142 (47%), Positives = 89/142 (62%), Gaps = 5/142 (3%)
Query: 133 SGNVTFIQHDDG-TVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQK 191
SG V F Q + TV + G N E GFHIHE GD GC S G H+NP +K
Sbjct: 14 SGVVKFEQASESEPTTVSYEIAGNSPNA----ERGFHIHEFGDATNGCVSAGPHFNPFKK 69
Query: 192 QHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRG 251
HGAP EVRH+GD+GN++ +GVA F+D +I L GP S++GR +++H+ +DD G+G
Sbjct: 70 THGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKG 129
Query: 252 MFNDSTTTGHAGSRVACGVIGL 273
+S TG+AG R ACGVIGL
Sbjct: 130 DTEESLKTGNAGPRPACGVIGL 151
Score = 51.6 bits (123), Expect = 6e-09
Identities = 40/132 (30%), Positives = 51/132 (38%), Gaps = 15/132 (11%)
Query: 48 AVAVLRPYASSPSVTSPSGNVTFIQHDDG-TVTVKGFVTGLKKNTAGSQEHGFHIHEKGD 106
AVAVL+ V SG V F Q + TV + G N E GFHIHE GD
Sbjct: 3 AVAVLK---GDAGV---SGVVKFEQASESEPTTVSYEIAGNSPNA----ERGFHIHEFGD 52
Query: 107 LREGCASLGGHYNPQQGNSSP--SVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQ- 163
GC S G H+NP + G++ ++ D+ V F L K +
Sbjct: 53 ATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSV 112
Query: 164 -EHGFHIHEKGD 174
IH D
Sbjct: 113 VGRSVVIHAGQD 124
>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 150
Score = 129 bits (324), Expect = 6e-38
Identities = 71/141 (50%), Positives = 88/141 (62%), Gaps = 6/141 (4%)
Query: 133 SGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQKQ 192
G V F Q D+G V+V+G + GL HGFHIH GD GC S G H+NP+ K
Sbjct: 14 KGVVHFEQQDEGAVSVEGKIEGLTDGL-----HGFHIHVFGDNTNGCMSAGSHFNPENKN 68
Query: 193 HGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRGM 252
HGAP RH+GDLGN+ A GVA F+ D +ISL GP SI+GR +VH DD G+G
Sbjct: 69 HGAPGDTDRHVGDLGNVTAE-GGVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKGG 127
Query: 253 FNDSTTTGHAGSRVACGVIGL 273
++S TG+AG R+ACGVIG
Sbjct: 128 NDESLKTGNAGGRLACGVIGY 148
Score = 56.3 bits (135), Expect = 1e-10
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 14/130 (10%)
Query: 48 AVAVLRPYASSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDL 107
AV VL S V G V F Q D+G V+V+G + GL HGFHIH GD
Sbjct: 3 AVCVLA---GSGDV---KGVVHFEQQDEGAVSVEGKIEGLTDGL-----HGFHIHVFGDN 51
Query: 108 REGCASLGGHYNPQQGNSS--PSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGS-QE 164
GC S G H+NP+ N G++ + + G K + + S
Sbjct: 52 TNGCMSAGSHFNPENKNHGAPGDTDRHVGDLGNVTAEGGVAQFKITDSLISLKGPNSIIG 111
Query: 165 HGFHIHEKGD 174
+HEK D
Sbjct: 112 RTAVVHEKAD 121
>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach
(Spinacia oleracea) [TaxId: 3562]}
Length = 154
Score = 128 bits (323), Expect = 9e-38
Identities = 74/141 (52%), Positives = 89/141 (63%), Gaps = 5/141 (3%)
Query: 133 SGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQKQ 192
G VT Q DDG TV ++GL HGFH+HE GD GC S G H+NP +K
Sbjct: 16 EGVVTLTQEDDGPTTVNVRISGLAPGK-----HGFHLHEFGDTTNGCMSTGPHFNPDKKT 70
Query: 193 HGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRGM 252
HGAP+ EVRH GDLGNI A+ GVA D I LTGP S++GR L+VH +DD G+G
Sbjct: 71 HGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGG 130
Query: 253 FNDSTTTGHAGSRVACGVIGL 273
S TTG+AG R+ACGV+GL
Sbjct: 131 HELSPTTGNAGGRLACGVVGL 151
Score = 50.1 bits (119), Expect = 2e-08
Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 15/131 (11%)
Query: 48 AVAVLRPYASSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDL 107
AVAVL+ ++ G VT Q DDG TV ++GL HGFH+HE GD
Sbjct: 5 AVAVLK------GTSNVEGVVTLTQEDDGPTTVNVRISGLAPGK-----HGFHLHEFGDT 53
Query: 108 REGCASLGGHYNP--QQGNSSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEH 165
GC S G H+NP + + +G++ I + V V T +
Sbjct: 54 TNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVV 113
Query: 166 G--FHIHEKGD 174
G +HE D
Sbjct: 114 GRALVVHELED 124
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke
(Schistosoma mansoni) [TaxId: 6183]}
Length = 156
Score = 126 bits (318), Expect = 5e-37
Identities = 68/142 (47%), Positives = 91/142 (64%), Gaps = 6/142 (4%)
Query: 133 SGNVTFIQH-DDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQK 191
G V F Q D+G V V +GLK HGFH+HE GD GC S G H+NP ++
Sbjct: 17 KGVVKFTQETDNGPVHVHAEFSGLKAGK-----HGFHVHEFGDTTNGCTSAGAHFNPTKQ 71
Query: 192 QHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRG 251
+HGAP+ +RH+GDLGN+ A G A + DK+ISL G +SI+GR +++H ++DD GRG
Sbjct: 72 EHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRSMVIHENEDDLGRG 131
Query: 252 MFNDSTTTGHAGSRVACGVIGL 273
S TG+AG R+ACGV+GL
Sbjct: 132 GHELSKVTGNAGGRLACGVVGL 153
Score = 50.5 bits (120), Expect = 2e-08
Identities = 38/132 (28%), Positives = 48/132 (36%), Gaps = 16/132 (12%)
Query: 48 AVAVLRPYASSPSVTSPSGNVTFIQH-DDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGD 106
AV V+ + V G V F Q D+G V V +GLK HGFH+HE GD
Sbjct: 6 AVCVMT---GTAGV---KGVVKFTQETDNGPVHVHAEFSGLKAGK-----HGFHVHEFGD 54
Query: 107 LREGCASLGGHYNPQQGNSS--PSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQE 164
GC S G H+NP + G++ + V L
Sbjct: 55 TTNGCTSAGAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSI 114
Query: 165 HG--FHIHEKGD 174
G IHE D
Sbjct: 115 IGRSMVIHENED 126
>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 123 bits (311), Expect = 5e-36
Identities = 54/140 (38%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 133 SGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQKQ 192
G V F+Q ++G + GL+ HG H+H+ GDL C S G H+NP
Sbjct: 17 QGVVRFLQLTPERCLIEGTIDGLEPGL-----HGLHVHQYGDLTNNCNSCGNHFNPDGAS 71
Query: 193 HGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRGM 252
HG P RH GDLGN+ A G A F ED+ + + + ++GR LI+ +DD GRG
Sbjct: 72 HGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKV---WDVIGRSLIIDEGEDDLGRGG 128
Query: 253 FNDSTTTGHAGSRVACGVIG 272
S TG++G R+ACG+I
Sbjct: 129 HPLSKITGNSGERLACGIIA 148
Score = 52.4 bits (125), Expect = 3e-09
Identities = 40/152 (26%), Positives = 52/152 (34%), Gaps = 26/152 (17%)
Query: 48 AVAVLRPYASSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDL 107
AVA+L +V G V F+Q ++G + GL+ HG H+H+ GDL
Sbjct: 6 AVAILG---GPGTV---QGVVRFLQLTPERCLIEGTIDGLEPGL-----HGLHVHQYGDL 54
Query: 108 REGCASLGGHYN-----PQQGNSSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGS 162
C S G H+N S GNV DG + LK
Sbjct: 55 TNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRA--DADGRAIFRMEDEQLKVWDVIG 112
Query: 163 QEHGFHIHEKGDLREGCASLGGHYNPQQKQHG 194
I E D LG +P K G
Sbjct: 113 --RSLIIDEGED------DLGRGGHPLSKITG 136
>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 171
Score = 112 bits (281), Expect = 2e-31
Identities = 41/160 (25%), Positives = 57/160 (35%), Gaps = 21/160 (13%)
Query: 131 SPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCAS-----LGGH 185
+ F +G TV TG+ K T G HG HIH+ G + G
Sbjct: 13 TKVATAKFEF-ANGYATVTIATTGVGKLTPG--FHGLHIHQVGKCEPNSVAPTGGAPGNF 69
Query: 186 YNPQQKQHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDK 245
+ H GDL +++ G A ++ S +I+H+
Sbjct: 70 LSAGGHYHVPGHTGTPASGDLASLQVRGDGSAMLVTTTDAFTMDDLLSGAKTAIIIHAGA 129
Query: 246 DDFGR-------------GMFNDSTTTGHAGSRVACGVIG 272
D+F G + TTG AG RVACGVIG
Sbjct: 130 DNFANIPPERYVQVNGTPGPDETTLTTGDAGKRVACGVIG 169
Score = 52.8 bits (126), Expect = 3e-09
Identities = 37/159 (23%), Positives = 52/159 (32%), Gaps = 23/159 (14%)
Query: 63 SPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCA---------- 112
+ F +G TV TG+ K T G HG HIH+ G
Sbjct: 13 TKVATAKFEF-ANGYATVTIATTGVGKLTPG--FHGLHIHQVGKCEPNSVAPTGGAPGNF 69
Query: 113 -SLGGHYNPQQGNSSPSVTSPSGNVTFIQHD-DGTVTVKGFVTGLKKNTAGS-QEHGFHI 169
S GGHY+ +P SG++ +Q DG+ + + S + I
Sbjct: 70 LSAGGHYHVPGHTGTP----ASGDLASLQVRGDGSAMLVTTTDAFTMDDLLSGAKTAIII 125
Query: 170 HEKGDLREGCASLGGHYNPQQKQHGAPDHEVRHIGDLGN 208
H D A++ Q PD GD G
Sbjct: 126 HAGAD---NFANIPPERYVQVNGTPGPDETTLTTGDAGK 161
>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD
{Actinobacillus pleuropneumoniae [TaxId: 715]}
Length = 155
Score = 109 bits (274), Expect = 2e-30
Identities = 39/153 (25%), Positives = 58/153 (37%), Gaps = 21/153 (13%)
Query: 128 SVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREG--------C 179
G V + G + + GL + HGFHIH+
Sbjct: 14 KGNKDVGTVEITESAYG-LVFTPHLHGLAQG-----LHGFHIHQNPSCEPKEKDGKLVAG 67
Query: 180 ASLGGHYNPQQ-KQHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRG 238
GGH++P++ KQHG P + H+GDL + G A+ L + G
Sbjct: 68 LGAGGHWDPKETKQHGYPWSDNAHLGDLPALFVEHDGSATNPVLAP--RLKKLDEVKGHS 125
Query: 239 LIVHSDKDDFGRGMFNDSTTTGHAGSRVACGVI 271
L++H D+ + G G R+ACGVI
Sbjct: 126 LMIHEGGDNHS----DHPAPLGGGGPRMACGVI 154
Score = 52.3 bits (125), Expect = 4e-09
Identities = 35/152 (23%), Positives = 53/152 (34%), Gaps = 24/152 (15%)
Query: 46 IVAVAVLRPYASSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKG 105
+V V L P + V G V + G + + GL + HGFHIH+
Sbjct: 4 VVQVQQLDPVKGNKDV----GTVEITESAYG-LVFTPHLHGLAQG-----LHGFHIHQNP 53
Query: 106 DLREG--------CASLGGHYNPQQGNSSPSVTSPSGNV----TFIQHDDGTVTVKGFVT 153
GGH++P++ S + ++ DG+ T +
Sbjct: 54 SCEPKEKDGKLVAGLGAGGHWDPKETKQHGYPWSDNAHLGDLPALFVEHDGSATNP-VLA 112
Query: 154 GLKKNTAGSQEHGFHIHEKGD-LREGCASLGG 184
K + H IHE GD + A LGG
Sbjct: 113 PRLKKLDEVKGHSLMIHEGGDNHSDHPAPLGG 144
>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella
typhimurium [TaxId: 90371]}
Length = 155
Score = 108 bits (272), Expect = 3e-30
Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 21/150 (14%)
Query: 131 SPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREG--------CASL 182
G +T + G + + GL HGFH+H G
Sbjct: 17 ENIGEITVSETPYG-LLFTPHLNGLTPG-----IHGFHVHTNPSCMPGMKDGKEVPALMA 70
Query: 183 GGHYNPQQK-QHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIV 241
GGH +P++ +H P ++ H+GDL + + G A++ L + G L++
Sbjct: 71 GGHLDPEKTGKHLGPYNDKGHLGDLPGLVVNADGTATYPLLAP--RLKSLSELKGHSLMI 128
Query: 242 HSDKDDFGRGMFNDSTTTGHAGSRVACGVI 271
H D++ G G+R ACGVI
Sbjct: 129 HKGGDNYSDK----PAPLGGGGARFACGVI 154
>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia
coli [TaxId: 562]}
Length = 154
Score = 108 bits (270), Expect = 5e-30
Identities = 40/149 (26%), Positives = 54/149 (36%), Gaps = 20/149 (13%)
Query: 131 SPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREG--------CASL 182
G+VT + D G + + L HGFHIH KG + S
Sbjct: 17 QSIGSVTITETDKG-LEFSPDLKALPPGE-----HGFHIHAKGSCQPATKDGKASAAESA 70
Query: 183 GGHYNPQQKQHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVH 242
GGH +PQ H+GDL + + G A+ L I + L+VH
Sbjct: 71 GGHLDPQNTGKHEGPEGAGHLGDLPALVVNNDGKATDAVIAP--RLKSLDEIKDKALMVH 128
Query: 243 SDKDDFGRGMFNDSTTTGHAGSRVACGVI 271
D+ + G G R ACGVI
Sbjct: 129 VGGDNMS----DQPKPLGGGGERYACGVI 153
Score = 47.7 bits (113), Expect = 1e-07
Identities = 33/134 (24%), Positives = 46/134 (34%), Gaps = 19/134 (14%)
Query: 63 SPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREG--------CASL 114
G+VT + D G + + L HGFHIH KG + S
Sbjct: 17 QSIGSVTITETDKG-LEFSPDLKALPPGE-----HGFHIHAKGSCQPATKDGKASAAESA 70
Query: 115 GGHYNPQQGN--SSPSVTSPSGNVTFIQHD-DGTVTVKGFVTGLKKNTAGSQEHGFHIHE 171
GGH +PQ P G++ + + DG T LK +H
Sbjct: 71 GGHLDPQNTGKHEGPEGAGHLGDLPALVVNNDGKATDAVIAPRLKSLDEIKD-KALMVHV 129
Query: 172 KGD-LREGCASLGG 184
GD + + LGG
Sbjct: 130 GGDNMSDQPKPLGG 143
>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD
{Photobacterium leiognathi [TaxId: 553611]}
Length = 151
Score = 107 bits (269), Expect = 9e-30
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
Query: 132 PSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREG--------CASLG 183
P G + Q+ G V + L EHGFHIH+ G + G
Sbjct: 15 PVGTIELSQNKYG-VVFIPELADLTPG-----EHGFHIHQNGSCASSEKDGKVVLGGAAG 68
Query: 184 GHYNPQQ-KQHGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVH 242
GHY+P+ +HG P + H GDL + S +G+A+ ++L + G +++H
Sbjct: 69 GHYDPEHTNKHGFPWTDDNHKGDLPALFVSANGLATNPVLAPRLTLK---ELKGHAIMIH 125
Query: 243 SDKDDFGRGMFNDSTTTGHAGSRVACGVI 271
+ D+ + G G+RVACGVI
Sbjct: 126 AGGDNHS----DMPKALGGGGARVACGVI 150
Score = 51.5 bits (123), Expect = 5e-09
Identities = 28/123 (22%), Positives = 39/123 (31%), Gaps = 20/123 (16%)
Query: 64 PSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREG--------CASLG 115
P G + Q+ G V + L EHGFHIH+ G + G
Sbjct: 15 PVGTIELSQNKYG-VVFIPELADLTPG-----EHGFHIHQNGSCASSEKDGKVVLGGAAG 68
Query: 116 GHYNPQQGNSSPSVTSPSGNV----TFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHE 171
GHY+P+ N + + +G T L + H IH
Sbjct: 69 GHYDPEHTNKHGFPWTDDNHKGDLPALFVSANGLATNPVLAPRLTLKEL--KGHAIMIHA 126
Query: 172 KGD 174
GD
Sbjct: 127 GGD 129
>d1ej8a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 140
Score = 96.2 bits (239), Expect = 1e-25
Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 24/139 (17%)
Query: 133 SGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGCASLGGHYNPQQKQ 192
G +Q + V G+ + + IHEKGD+ +G S G ++ +
Sbjct: 24 RGLARIVQVGENKTLFDITVNGVPEAG----NYHASIHEKGDVSKGVESTGKVWHKFDE- 78
Query: 193 HGAPDHEVRHIGDLGNIEASPSGVASFEFEDKIISLTGPYSILGRGLIVHSDKDDFGRGM 252
I + + + F + + ++GR ++ +
Sbjct: 79 ---------PIECFNESDLGKNLYSGKTFLSAPLPT---WQLIGRSFVISKSLNHPENE- 125
Query: 253 FNDSTTTGHAGSRVACGVI 271
GVI
Sbjct: 126 ------PSSVKDYSFLGVI 138
Score = 58.1 bits (140), Expect = 2e-11
Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 17/131 (12%)
Query: 48 AVAVLRPYASSPSV----TSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHE 103
AVA+L + T+ G +Q + V G+ + + IHE
Sbjct: 3 AVAILETFQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAG----NYHASIHE 58
Query: 104 KGDLREGCASLGGHYNPQQGNSSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQ 163
KGD+ +G S G ++ P ++ + L
Sbjct: 59 KGDVSKGVESTGKVWHK---FDEPIECFNESDL----GKNLYSGKTFLSAPLPTWQL--I 109
Query: 164 EHGFHIHEKGD 174
F I + +
Sbjct: 110 GRSFVISKSLN 120
>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 28.6 bits (64), Expect = 0.27
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 10/61 (16%)
Query: 61 VTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGC----ASLGG 116
VTSP+ VT + T+ G K GF I G A++ G
Sbjct: 29 VTSPNITVTLKKFPLDTLIPDG------KRIIWDSRKGFIISNATYKEIGLLTCEATVNG 82
Query: 117 H 117
H
Sbjct: 83 H 83
Score = 28.6 bits (64), Expect = 0.27
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 10/61 (16%)
Query: 129 VTSPSGNVTFIQHDDGTVTVKGFVTGLKKNTAGSQEHGFHIHEKGDLREGC----ASLGG 184
VTSP+ VT + T+ G K GF I G A++ G
Sbjct: 29 VTSPNITVTLKKFPLDTLIPDG------KRIIWDSRKGFIISNATYKEIGLLTCEATVNG 82
Query: 185 H 185
H
Sbjct: 83 H 83
>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 80
Score = 25.5 bits (56), Expect = 2.5
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 112 ASLGGHYNPQQGNSSPSVTSPSGN---VTFIQHDDGTVTVK 149
+L + Q+G + V PSG + DGT+TV+
Sbjct: 4 FNLVIPFAVQKGELTGEVRMPSGKTARPNITDNKDGTITVR 44
>d2a2la1 d.110.9.1 (A:4-145) DhaI homolog {Klebsiella pneumoniae
[TaxId: 573]}
Length = 142
Score = 26.2 bits (57), Expect = 3.2
Identities = 25/122 (20%), Positives = 39/122 (31%), Gaps = 12/122 (9%)
Query: 35 VQVLSEDFAGKIVAVAVLR----PYASSPSVTSPSGNVTFIQHDDGTVTVKGFVTGLKKN 90
VQ ++ A ++ A + A SV GN IQ D ++ K
Sbjct: 7 VQTITLAAAQQMAAAVEKKATEINVAVVFSVVDRGGNTLLIQRMDEAFVSSCDISLNKAW 66
Query: 91 TAGSQEHGFHIHEKGDLREGCASLGGHYNPQQGNSSPSVTSPSGNVTFIQHDD--GTVTV 148
+A S HE + G Q + + G + I ++ G V V
Sbjct: 67 SACS--LKQGTHEITSAVQP----GQSLYGLQLTNQQRIIIFGGGLPVIFNEQVIGAVGV 120
Query: 149 KG 150
G
Sbjct: 121 SG 122
>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 73
Score = 24.3 bits (53), Expect = 5.0
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 15/48 (31%)
Query: 34 VVQVLSEDFAGKIVAVAVLRPYASSPSVTSPSGNVTFIQHDDGTVTVK 81
V +VL+E +RPY + G + F+ V V+
Sbjct: 8 VEKVLNE-----------IRPYL----AGTGGGGLQFLMIKGPIVKVR 40
>d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4,
catalytic C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 370
Score = 25.9 bits (57), Expect = 5.5
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 192 QHGAPDHEVRHIGDLGNIEASP 213
G + + GN+E SP
Sbjct: 100 TRGPQTGGISGLDSFGNLEVSP 121
>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 24.9 bits (53), Expect = 6.5
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 97 HGFHIHEKGDLREGCASLGGHYNPQQGNSSP-SVTSPSGNVTFIQHDDGTVTVKGF 151
F +++ ++ +G +G H G +P + S SG ++ + + D + +GF
Sbjct: 48 GMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGF 103
>d1gnta_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 553
Score = 25.9 bits (57), Expect = 7.1
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 6 IIYLGVVVLEIERSIMWTTLAPVFFSFLVVQVLSEDF 42
+ L ++ L ++ + TL P F S V +VL E+F
Sbjct: 499 AVLLALLFLGVKGIRLGPTL-PAFLSPNVAKVLVENF 534
>d1gnla_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 543
Score = 25.5 bits (56), Expect = 8.3
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 6 IIYLGVVVLEIERSIMWTTLAPVFFSFLVVQVLSEDF 42
I+ L ++ L + ++I P F S V +VL E F
Sbjct: 492 IVLLALLSLGV-KNIHLGPTLPAFLSPNVAKVLVEQF 527
>d1m1la_ d.260.1.1 (A:) Suppressor of Fused, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 24.8 bits (54), Expect = 9.9
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 40 EDFAGKIVAVAVLRPYASSPSVTSPSGNVTFIQ 72
++ +I + + V +P G VTF+Q
Sbjct: 142 DNSESRIQHMLLTED-PQMQPVQTPFGVVTFLQ 173
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.408
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,046,563
Number of extensions: 48414
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 35
Length of query: 274
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,254,276
Effective search space: 238312440
Effective search space used: 238312440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.5 bits)