BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy944
(689 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/255 (48%), Positives = 168/255 (65%), Gaps = 21/255 (8%)
Query: 231 KNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQV 290
K+ K FV+ +PPPNVTG+LH+GHAL N+++D++ R+ RM+G +W PG DHAGIATQV
Sbjct: 30 KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQV 89
Query: 291 VVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPK 350
VVE+ L +E KTRH++GREKF+E+VW+WK+E G I +Q+K +G+S DW R FTMD K
Sbjct: 90 VVERLLLKE-GKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEK 148
Query: 351 LSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPV 410
SRAV AF + G YR+ RLV+W ++ +SD+EV+ T TP
Sbjct: 149 RSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVE----TEPTP---------- 194
Query: 411 DFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLR 470
G L + Y++ +G G I +AT R ET+FAD A+AVHPEDERY+HL+ K T +
Sbjct: 195 --GKLYTLRYEV-EGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVW 251
Query: 471 VPGYANPV---DFGV 482
+P A+P DFG
Sbjct: 252 IPILADPAVEKDFGT 266
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 86/130 (66%), Gaps = 3/130 (2%)
Query: 481 GVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFCERKIP 540
G L + Y++E G G I +AT R ET+FAD A+AVHPEDERY+HL+GK P E IP
Sbjct: 195 GKLYTLRYEVE-GGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIP 253
Query: 541 ILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY--GEFTGMK 598
ILAD VEKDFGTGA+K++P HD DYE+ +R L ++V N EG + G+ G+
Sbjct: 254 ILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLD 313
Query: 599 RFDARTRVTE 608
RF+AR + E
Sbjct: 314 RFEARRKAVE 323
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 100/206 (48%), Gaps = 46/206 (22%)
Query: 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKK 60
+AE+ ++ ++ G++ +P+ K WLEN +DW ISRQLWWGH+IPA+Y
Sbjct: 366 LAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAV-- 423
Query: 61 PKNVTEYELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWP 120
NV E ++ + EA L++DEDV DTWFSS L+P S GWP
Sbjct: 424 --NVPRPERYLEDPTSCEA-----------CGSPRLKRDEDVFDTWFSSALWPLSTLGWP 470
Query: 121 DK------------------------QRLSANGIH-------SEVFLHPIVRDAHGRKMS 149
++ R+ +G H V LH +V D G+KMS
Sbjct: 471 EETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMS 530
Query: 150 KSLGNVIDPLDVVKGISLAGLQGRLL 175
KS GNVIDPL++V+ L+ L+
Sbjct: 531 KSKGNVIDPLEMVERYGADALRFALI 556
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 146
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 86/130 (66%), Gaps = 3/130 (2%)
Query: 481 GVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFCERKIP 540
G L + Y++E G G I +AT R ET+FAD A+AVHPEDERY+HL+GK P E IP
Sbjct: 4 GKLYTLRYEVE-GGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIP 62
Query: 541 ILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY--GEFTGMK 598
ILAD VEKDFGTGA+K++P HD DYE+ +R L ++V N EG + G+ G+
Sbjct: 63 ILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLD 122
Query: 599 RFDARTRVTE 608
RF+AR + E
Sbjct: 123 RFEARRKAVE 132
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 413 GVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVP 472
G L + Y+++ G G I +AT R ET+FAD A+AVHPEDERY+HL+ K T + +P
Sbjct: 4 GKLYTLRYEVE-GGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIP 62
Query: 473 GYANPV---DFGVLA 484
A+P DFG A
Sbjct: 63 ILADPAVEKDFGTGA 77
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 147
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 86/130 (66%), Gaps = 3/130 (2%)
Query: 481 GVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFCERKIP 540
G L + Y++E G G I +AT R ET+FAD A+AVHPEDERY+HL+GK P E IP
Sbjct: 4 GKLYTLRYEVE-GGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIP 62
Query: 541 ILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY--GEFTGMK 598
ILAD VEKDFGTGA+K++P HD DYE+ +R L ++V N EG + G+ G+
Sbjct: 63 ILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLD 122
Query: 599 RFDARTRVTE 608
RF+AR + E
Sbjct: 123 RFEARRKAVE 132
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 413 GVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVP 472
G L + Y+++ G G I +AT R ET+FAD A+AVHPEDERY+HL+ K T + +P
Sbjct: 4 GKLYTLRYEVE-GGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIP 62
Query: 473 GYANPV---DFGVLA 484
A+P DFG A
Sbjct: 63 ILADPAVEKDFGTGA 77
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 101/388 (26%), Positives = 172/388 (44%), Gaps = 62/388 (15%)
Query: 230 EKNPKGK--FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIA 287
EKN KG F++ PP G LH+GHAL ++D I R+ M+G + PG D G+
Sbjct: 42 EKN-KGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLP 100
Query: 288 TQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTM 347
+ + KK R ++ +F EK E+ E+ + + + +G D++ T+
Sbjct: 101 IEQALTKK-----GVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITL 155
Query: 348 DPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYA 407
P+ A F + + G IY+ ++ V+WS S +S++++ E++ Y
Sbjct: 156 KPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIE--------------YH 201
Query: 408 NPVDFGVLASFAYKLD----DGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVEL 463
+ + +F K D D + ++ TT T+ ++VA+ VHPE + ++ V+
Sbjct: 202 DKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVN---- 257
Query: 464 TGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIV---VATTRLETLFADVAVAVHPEDE 520
G A L D E + A+ +LE +
Sbjct: 258 -----------------GEKYIIAEALSDAVAEALDWDKASIKLEKEYTG---------- 290
Query: 521 RYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITV 580
K L + HPF +R+ ++ V D GTG V +PGH +DY V Q+ LP+I+
Sbjct: 291 --KELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISP 348
Query: 581 FNEEGVIIGDYGEFTGMKRFDARTRVTE 608
+++GV + G+F GM A VT+
Sbjct: 349 IDDKGVFTEEGGQFEGMFYDKANKAVTD 376
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 32/170 (18%)
Query: 26 YQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEY-ELWVSGRSK--EEAEQK 82
Y + + +W ISRQ WG +P +Y + + V +L+ S E E K
Sbjct: 442 YNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAK 501
Query: 83 AISKFNVTQA---DISLRQDEDVLDTWFSSGL-------------FPFSVF--------G 118
+ T + + ++ D++D WF SG FP ++ G
Sbjct: 502 DLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRG 561
Query: 119 WPDKQ---RLSANGIHSEVFL--HPIVRDAHGRKMSKSLGNVIDPLDVVK 163
W + ++ G+ FL H V D G+KMSKSLGNVI P VVK
Sbjct: 562 WFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVK 611
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 99/426 (23%), Positives = 155/426 (36%), Gaps = 109/426 (25%)
Query: 224 RRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDH 283
R + E K K+ + P +G LH+GH + D I R+ RM GK L G D
Sbjct: 42 RTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDA 101
Query: 284 AGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRA 343
G+ + K T I K Q+K++G DW R
Sbjct: 102 FGLPAEGAAVKNNTAPAPWTYDNIAYMK-----------------NQLKMLGFGYDWSRE 144
Query: 344 CFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAIS------------DIEVD 391
T P+ R + F L++ G +Y+ V+W + ++ ++ D +V+
Sbjct: 145 LATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVE 204
Query: 392 KVELTGRTPLRVPGYANPV--DFGVL--------------------ASFAYKLDDGSGEI 429
+ E+ + +++ YA+ + D L + ++D +
Sbjct: 205 RKEIP-QWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTL 263
Query: 430 VVATTRLETLFADVAVAV---HPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASF 486
V TTR +T +AV HP ++ NP LA+F
Sbjct: 264 TVYTTRPDTFMGCTYLAVAAGHPLAQKAAE------------------NNP----ELAAF 301
Query: 487 AYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFCERKIPILADSF 546
D VA + T+ E+ G VHP +IP+ A +F
Sbjct: 302 I----DECRNTKVAEAEMATM------------EKKGVDTGFKAVHPLTGEEIPVWAANF 345
Query: 547 VEKDFGTGAVKISPGHDHNDYEVAQRLNL---PLI------------TVFNEEGVIIGDY 591
V ++GTGAV PGHD DYE A + L P+I E+GV+
Sbjct: 346 VLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNS- 404
Query: 592 GEFTGM 597
GEF G+
Sbjct: 405 GEFNGL 410
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 93/393 (23%), Positives = 141/393 (35%), Gaps = 99/393 (25%)
Query: 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVE 293
+GK +++ P +G LH+GH + D + R+ RM+G L G D G+
Sbjct: 32 RGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPA----- 86
Query: 294 KKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSR 353
E KF +W + E ++LMG DWDR T +P+ R
Sbjct: 87 ------------ENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYR 134
Query: 354 AVTEAFVILHEAGDIYRSERLVHWSCSLKSAIS-------------DIEVDKVELTGRTP 400
F+ + E G YR++ LV+W ++ ++ D V+K EL +
Sbjct: 135 WNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELE-QWY 193
Query: 401 LRVPGYANPV--DFGVL-------------------ASFAYKLDDGSGEIVVATTRLETL 439
LR+ YA + D L A + ++ I V TTR +TL
Sbjct: 194 LRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTL 253
Query: 440 FADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVV 499
F + + PE PL + E+
Sbjct: 254 FGATFLVLAPEH----------------PLTL------------------------ELAA 273
Query: 500 ATTRLETLFADVAVAVHPEDERYKH-------LVGKLLVHPFCERKIPILADSFVEKDFG 552
R E L A E ER +G ++P +IPI +V +G
Sbjct: 274 PEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYG 333
Query: 553 TGAVKISPGHDHNDYEVAQRLNLPLITVFNEEG 585
TGA+ P HD DYE A++ LP+ V G
Sbjct: 334 TGAIMAVPAHDQRDYEFARKFGLPIKKVIERPG 366
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 33 RDWCISRQLWWGHRIPAYYVSFND---------PAKKPKNVTEYELWVSGRSKEEAEQKA 83
RDW ISRQ +WG IP + P P ++ G+S EA +
Sbjct: 420 RDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPE- 478
Query: 84 ISKFNVTQADISLRQDEDVLDTWFSSGLF 112
+ + ++D D +DT+F S +
Sbjct: 479 FYETTCPKCGGPAKRDTDTMDTFFDSSWY 507
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 93/393 (23%), Positives = 141/393 (35%), Gaps = 99/393 (25%)
Query: 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVE 293
+GK +++ P +G LH+GH + D + R+ RM+G L G D G+
Sbjct: 32 RGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPA----- 86
Query: 294 KKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSR 353
E KF +W + E ++LMG DWDR T +P+ R
Sbjct: 87 ------------ENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYR 134
Query: 354 AVTEAFVILHEAGDIYRSERLVHWSCSLKSAIS-------------DIEVDKVELTGRTP 400
F+ + E G YR++ LV+W ++ ++ D V+K EL +
Sbjct: 135 WNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELE-QWY 193
Query: 401 LRVPGYANPV--DFGVL-------------------ASFAYKLDDGSGEIVVATTRLETL 439
LR+ YA + D L A + ++ I V TTR +TL
Sbjct: 194 LRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTL 253
Query: 440 FADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVV 499
F + + PE PL + E+
Sbjct: 254 FGATFLVLAPEH----------------PLTL------------------------ELAA 273
Query: 500 ATTRLETLFADVAVAVHPEDERYKH-------LVGKLLVHPFCERKIPILADSFVEKDFG 552
R E L A E ER +G ++P +IPI +V +G
Sbjct: 274 PEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYG 333
Query: 553 TGAVKISPGHDHNDYEVAQRLNLPLITVFNEEG 585
TGA+ P HD DYE A++ LP+ V G
Sbjct: 334 TGAIMAVPAHDQRDYEFARKFGLPIKKVIERPG 366
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 33 RDWCISRQLWWGHRIPAYYVSFND---------PAKKPKNVTEYELWVSGRSKEEAEQKA 83
RDW ISRQ +WG IP + P P ++ G+S EA +
Sbjct: 420 RDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPE- 478
Query: 84 ISKFNVTQADISLRQDEDVLDTWFSSGLF 112
+ + ++D D +DT+F S +
Sbjct: 479 FYETTCPKCGGPAKRDTDTMDTFFDSSWY 507
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 91/379 (24%), Positives = 147/379 (38%), Gaps = 71/379 (18%)
Query: 225 RKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHA 284
+KS+ + ++ + PP G H+GHA + +D R+ M+G G D
Sbjct: 28 QKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTH 87
Query: 285 GIATQVVVEKKLWREEKKTRHEIGREKF----------IEKVWEWKKEKGDRIYEQMKLM 334
G+ ++ VEKKL + K+ G E+F EK WE E+ +
Sbjct: 88 GLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTER----------I 137
Query: 335 GSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVE 394
+D + A T++P ++ + L + G +YR ++V + + +S EV
Sbjct: 138 AYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV---- 193
Query: 395 LTGRTPLRVPGYANPVDFGVLASFAY----KLDDGSGEIVVATTRLETLFADVAVAVHPE 450
GY D V F KL +++ TT TL +VA AVHPE
Sbjct: 194 --------ALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPE 245
Query: 451 DERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVAT-TRLETLFA 509
Y + +V A LE+G G ++ T++ F
Sbjct: 246 ---YTYAAFQV----------------------GDEALILEEGLGRKLLGEGTQVLKTFP 280
Query: 510 DVAVAVHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEV 569
A+ P Y + K +LAD +V ++ GTG V +P D E
Sbjct: 281 GKALEGLPYTPPYPQALEK--------GYFVVLAD-YVSQEDGTGIVHQAPAFGAEDLET 331
Query: 570 AQRLNLPLITVFNEEGVII 588
A+ LPL+ +EEG ++
Sbjct: 332 ARVYGLPLLKTVDEEGKLL 350
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 42/212 (19%)
Query: 13 ELKIIPDHHTKTWY-QWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWV 71
E+ +P H + Y +WL+N DW +SR +WG +P + K + + ++
Sbjct: 421 EIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQ---ACGKEEAIGSFQELK 477
Query: 72 SGRSKEEAEQKAISKFNVTQADI------SLRQDEDVLDTWFSSGLFPFSVFGWP----- 120
+ +K E + V Q ++ ++R+ V+D W+ SG PF+ +P
Sbjct: 478 ARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEE 537
Query: 121 ---------------DKQRLSANGIHS------------EVFLHPIVRDAHGRKMSKSLG 153
D+ R N +H V H ++ D G+KMSKS G
Sbjct: 538 VFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKG 597
Query: 154 NVIDPLDVVKGISLAGLQGRLLQDSNLEAAER 185
NV+DP D+++ L+ + + EA R
Sbjct: 598 NVVDPWDIIRKFGADALRWYIYVSAPPEADRR 629
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 98/410 (23%), Positives = 158/410 (38%), Gaps = 96/410 (23%)
Query: 227 SIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTL----WN-PGC 281
+I +K + KF + + P ++G LH+GHA T + D I R+ RM+G L W+ G
Sbjct: 26 NIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85
Query: 282 DHAGIATQVVVE--KKLW--REEKKTRHEIGREKFIEKVWEWKKEKGDRIY------EQM 331
GIA ++ K +W R+ K EI +W ++ Y E
Sbjct: 86 PIVGIAERIKNRDPKTIWIYRDVYKVPEEI--------LWTFEDPINIVKYFMKAAKETF 137
Query: 332 KLMGSSLDWDRACFT--MDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIE 389
G S+DW R +T + P S+ + F L E G I + V W + + + D +
Sbjct: 138 IRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHD 197
Query: 390 VDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHP 449
+ + G P+ ++ F + + + AT R ET++ + V+P
Sbjct: 198 L------------MEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNP 245
Query: 450 EDERYKHLV---DKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLET 506
K V DK E + V AYKL EI V
Sbjct: 246 NATYVKAKVRRKDKEE----------------TWIVSKEAAYKLSFQDREIEVI------ 283
Query: 507 LFADVAVAVHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGH---D 563
E+ + + L+GK + +P ++ IL FV+ D TG V P H D
Sbjct: 284 -----------EEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFD 332
Query: 564 H-------------NDYEVAQRL--NLPLITVFNEEGVIIGDYGEFTGMK 598
H Y++ R+ N+ I++ EG YG+F ++
Sbjct: 333 HVALEDLKRETEILEKYDIDPRIVENITYISLIKLEG-----YGDFPAVE 377
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 98/410 (23%), Positives = 158/410 (38%), Gaps = 96/410 (23%)
Query: 227 SIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTL----WN-PGC 281
+I +K + KF + + P ++G LH+GHA T + D I R+ RM+G L W+ G
Sbjct: 26 NIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85
Query: 282 DHAGIATQVVVE--KKLW--REEKKTRHEIGREKFIEKVWEWKKEKGDRIY------EQM 331
GIA ++ K +W R+ K EI +W ++ Y E
Sbjct: 86 PIVGIAERIKNRDPKTIWIYRDVYKVPEEI--------LWTFEDPINIVKYFMKAAKETF 137
Query: 332 KLMGSSLDWDRACFT--MDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIE 389
G S+DW R +T + P S+ + F L E G I + V W + + + D +
Sbjct: 138 IRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHD 197
Query: 390 VDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHP 449
+ + G P+ ++ F + + + AT R ET++ + V+P
Sbjct: 198 L------------MEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNP 245
Query: 450 EDERYKHLV---DKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLET 506
K V DK E + V AYKL EI V
Sbjct: 246 NATYVKAKVRRKDKEE----------------TWIVSKEAAYKLSFQDREIEVI------ 283
Query: 507 LFADVAVAVHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGH---D 563
E+ + + L+GK + +P ++ IL FV+ D TG V P H D
Sbjct: 284 -----------EEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFD 332
Query: 564 H-------------NDYEVAQRL--NLPLITVFNEEGVIIGDYGEFTGMK 598
H Y++ R+ N+ I++ EG YG+F ++
Sbjct: 333 HVALEDLKRETEILEKYDIDPRIVENITYISLIKLEG-----YGDFPAVE 377
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJG|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJH|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJH|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJI|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
pdb|2AJI|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
Length = 196
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 531 VHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNL---PLI--------- 578
VHP +IP+ A +FV ++GTGAV PGHD DYE A + L P+I
Sbjct: 93 VHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPD 152
Query: 579 ---TVFNEEGVIIGDYGEFTGM 597
E+GV+ + GEF G+
Sbjct: 153 LSQQALTEKGVLF-NSGEFNGL 173
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20
pdb|3PZ5|B Chain B, The Crystal Structure Of Aaleurs-Cp1-D20
Length = 201
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 518 EDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPL 577
E+++ +G +P KIP+ + ++V ++GTGA+ P HD D+E A++ +LP+
Sbjct: 87 EEDKEGVFLGVYATNPANGEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPI 146
Query: 578 ITVFNEEGVIIGDYGEFTG 596
V EG + G + G
Sbjct: 147 KVVVKPEGAWDFEKGAYEG 165
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|B Chain B, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|C Chain C, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|D Chain D, The Crystal Structure Of Aaleurs-Cp1
Length = 221
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 518 EDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPL 577
E+++ +G +P KIP+ + ++V ++GTGA+ P HD D+E A++ +LP+
Sbjct: 107 EEDKEGVFLGVYATNPANGEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPI 166
Query: 578 ITVFNEEGVIIGDYGEFTG 596
V EG + G + G
Sbjct: 167 KVVVKPEGAWDFEKGAYEG 185
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
pdb|3O0A|B Chain B, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
Length = 219
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 518 EDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPL 577
E+++ +G +P KIP+ + ++V ++GTGA+ P HD D+E A++ +LP+
Sbjct: 101 EEDKEGVFLGVYATNPANGEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPI 160
Query: 578 ITVFNEEGVIIGDYGEFTG 596
V EG + G + G
Sbjct: 161 KVVVKPEGAWDFEKGAYEG 179
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 56/146 (38%), Gaps = 24/146 (16%)
Query: 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKK 295
KF + P V HLGHA T D+I R+ R++ + G D G+ Q
Sbjct: 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQ------ 59
Query: 296 LWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACF--TMDPKLSR 353
K E+G KE DR E+ K + L + F T DP +
Sbjct: 60 ------KKAEELGIS---------PKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVK 104
Query: 354 AVTEAFVILHEAGDIYRSERLVHWSC 379
V + F ++ GDIY E W C
Sbjct: 105 FVQKVFEECYKRGDIYLGE-YEGWYC 129
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 145 GRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177
G+KMSK+LGNV+DP +VV+ L ++ LL++
Sbjct: 293 GKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLRE 325
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 82/209 (39%), Gaps = 22/209 (10%)
Query: 215 YMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKT 274
+ ++ E+T K+ + K + + P P+ +G LH+GH D I+R+ R+KG
Sbjct: 18 WQTRWEKTKAFKTTNKSKDKFYALDMFPYPSGSG-LHVGHPEGYTATDIISRYKRLKGFD 76
Query: 275 TLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLM 334
L G D G+ + + T I + Q+K +
Sbjct: 77 VLHPIGWDAFGLPAEQYALSSGKHPQPFTLKNI-----------------ENFRRQLKSL 119
Query: 335 GSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISD---IEVD 391
G S D+++ T DP R F +++ G E V+W L + +++ +E D
Sbjct: 120 GFSFDYEKEVNTTDPSYYRWTQWIFKQIYKKGLAEIREVDVNWCPGLGTVLANEEIVEND 179
Query: 392 KVELTGRTPLRVPGYANPVDFGVLASFAY 420
K E+ P Y P+ VL Y
Sbjct: 180 KGEMVSERG-SFPVYKKPMKQWVLKITNY 207
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 145 GRKMSKSLGNVIDPLDVVKGISLAGLQ 171
G+KMSKSLGNV++P ++++ L+
Sbjct: 408 GQKMSKSLGNVVNPDEIIQNFGADTLR 434
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 19/136 (13%)
Query: 237 FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKL 296
F + P V HLGHA T V D + RW+R+ G T + G D G + +
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG--------ETV 56
Query: 297 WREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVT 356
+R + + + F+++V R L+G + +D T + + + V
Sbjct: 57 YRAAQAAGED--PKAFVDRV-------SGRFKRAWDLLG--IAYDDFIRTTEERHKKVVQ 105
Query: 357 EAFVILHEAGDIYRSE 372
++EAGDIY E
Sbjct: 106 LVLKKVYEAGDIYYGE 121
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 111 LFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGL 170
L P +VF WP + + ++ + + + GRKMSK+LGNV+DP +++ L
Sbjct: 262 LKPHAVF-WPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDAL 320
Query: 171 QGRLLQD 177
+ LL++
Sbjct: 321 RYYLLRE 327
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 19/136 (13%)
Query: 237 FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKL 296
F + P V HLGHA T V D + RW+R+ G T + G D G + +
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG--------ETV 56
Query: 297 WREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVT 356
+R + + + F+++V R L+G + +D T + + + V
Sbjct: 57 YRAAQAAGED--PKAFVDRV-------SGRFKRAWDLLG--IAYDDFIRTTEERHKKVVQ 105
Query: 357 EAFVILHEAGDIYRSE 372
++EAGDIY E
Sbjct: 106 LVLKKVYEAGDIYYGE 121
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 111 LFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGL 170
L P +VF WP + + ++ + + + GRKMSK+LGNV+DP +++ L
Sbjct: 262 LKPHAVF-WPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDAL 320
Query: 171 QGRLLQD 177
+ LL++
Sbjct: 321 RYYLLRE 327
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 19/136 (13%)
Query: 237 FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKL 296
F + P V HLGHA T V D + RW+R+ G T + G D G + +
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG--------ETV 56
Query: 297 WREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVT 356
+R + + + F+++V R L+G + +D T + + + V
Sbjct: 57 YRAAQAAGED--PKAFVDRV-------SGRFKRAWDLLG--IAYDDFIRTTEERHKKVVQ 105
Query: 357 EAFVILHEAGDIYRSE 372
++EAGDIY E
Sbjct: 106 LVLKKVYEAGDIYYGE 121
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 111 LFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGL 170
L P +VF WP + + ++ + + + GRKMSK+LGNV+DP +++ L
Sbjct: 262 LKPHAVF-WPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDAL 320
Query: 171 QGRLLQD 177
+ LL++
Sbjct: 321 RYYLLRE 327
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 114 FSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGR 173
F WP + + VF H + + G KMSKS+GNVIDP ++V+ L L+
Sbjct: 289 FHAVYWPAFLMSAQLPLPKRVFAHGFLFN-RGEKMSKSVGNVIDPFELVERYGLDQLRYF 347
Query: 174 LLQD 177
L+++
Sbjct: 348 LMRE 351
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 241 IPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGI 286
I PN G H+GHA D++ R+ R+ G + G D GI
Sbjct: 33 IAYPN--GKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGI 76
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 114 FSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGR 173
F WP + + +F H + + G KMSKS+GNV+DP+++V L ++
Sbjct: 278 FHTVYWPAFLMSAGLPLPKRIFAHGWLLN-RGEKMSKSIGNVVDPVNLVDTFGLDQVRYF 336
Query: 174 LLQD 177
LL++
Sbjct: 337 LLRE 340
>pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNY|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Post-Transfer Editing Substrate Analogue, Val-2aa
Length = 186
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 541 ILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVII 588
+LAD +V ++ GTG V +P D E A+ LPL+ +EEG ++
Sbjct: 105 VLAD-YVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLL 151
>pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
pdb|1UE0|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
Length = 182
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 541 ILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVII 588
+LAD +V ++ GTG V +P D E A+ LPL+ +EEG ++
Sbjct: 105 VLAD-YVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLL 151
>pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1UDZ|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
Length = 182
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 541 ILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVII 588
+LAD +V ++ GTG V +P D E A+ LPL+ +EEG ++
Sbjct: 105 VLAD-YVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLL 151
>pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
pdb|1WK8|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
Length = 194
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 541 ILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVII 588
+LAD +V ++ GTG V +P D E A+ LPL+ +EEG ++
Sbjct: 110 VLAD-YVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLL 156
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 146 RKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLE 181
+K+SKSLGN DP++ K + L+ L+++SN +
Sbjct: 338 KKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQ 373
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 219 GERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWN 278
G + + G + F P V + H+GH + + D + R++R+KG+
Sbjct: 10 GTLEAQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVM 69
Query: 279 PGCDHAG 285
G D G
Sbjct: 70 TGTDEHG 76
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKG 272
K ++ P G++HLGH L + D R+ RM+G
Sbjct: 19 KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRG 55
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 237 FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAG 285
F + P V H+GH + + D I R++R+KG+ G D G
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG 59
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 143 AHG------RKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180
AHG +K+SKSLGNV DP++ + L+ LL++S
Sbjct: 313 AHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGF 356
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 237 FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAG 285
F + P V H+GH + + D I R++R+KG+ G D G
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG 59
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 143 AHG------RKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180
AHG +K+SKSLGNV DP++ + L+ LL++S
Sbjct: 313 AHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGF 356
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 237 FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAG 285
F + P V H+GH + + D I R++R+KG+ G D G
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG 59
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 143 AHG------RKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180
AHG +K+SKSLGNV DP++ + L+ LL++S
Sbjct: 313 AHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGF 356
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKG 272
K ++ P G++HLGH L + D R+ RM+G
Sbjct: 6 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRG 42
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKG 272
K ++ P G++HLGH L + D R+ RM+G
Sbjct: 6 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRG 42
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKG 272
K ++ P G++HLGH L + D R+ RM+G
Sbjct: 6 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRG 42
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKG 272
K ++ P G++HLGH L + D R+ RM+G
Sbjct: 7 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRG 43
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 229 GEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKG 272
GEK + F++ N TG LH+GHA D++TR R G
Sbjct: 25 GEKKQES-FLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLG 67
>pdb|1XNG|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Helicobacter Pylori
pdb|1XNG|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Helicobacter Pylori
pdb|1XNH|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Helicobacter Pylori
Length = 268
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 485 SFAYKLEDGSGEIVVATTRLE-------TLFADVAVAVHPEDERYKHLVGKLLVHPFCER 537
+F Y S +V+ T+ TLF D+A A++P E +K V +L +
Sbjct: 116 AFLYDYSLKSDSLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELARRLNIPK 175
Query: 538 KI---PILADSFV----EKDFGTGAVKISP 560
KI P AD FV EKD G I P
Sbjct: 176 KILNKPPSADLFVGQSDEKDLGYPYSVIDP 205
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 429 IVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASF 486
+V+ T L + D +P + LV + T LR PGY N G++AS
Sbjct: 203 VVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASL 260
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 429 IVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASF 486
+V+ T L + D +P + LV + T LR PGY N G++AS
Sbjct: 203 VVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASL 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,245,554
Number of Sequences: 62578
Number of extensions: 923672
Number of successful extensions: 2098
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2002
Number of HSP's gapped (non-prelim): 81
length of query: 689
length of database: 14,973,337
effective HSP length: 105
effective length of query: 584
effective length of database: 8,402,647
effective search space: 4907145848
effective search space used: 4907145848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)