Query psy944
Match_columns 689
No_of_seqs 391 out of 3794
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 19:24:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0060 IleS Isoleucyl-tRNA sy 100.0 3E-88 6.5E-93 774.4 26.9 411 205-670 17-453 (933)
2 PRK06039 ileS isoleucyl-tRNA s 100.0 8.9E-85 1.9E-89 779.1 34.8 413 199-671 6-443 (975)
3 PF00133 tRNA-synt_1: tRNA syn 100.0 3.6E-85 7.7E-90 749.2 27.0 398 214-672 1-415 (601)
4 PLN02882 aminoacyl-tRNA ligase 100.0 1.2E-83 2.6E-88 772.2 33.5 416 205-671 7-464 (1159)
5 PTZ00427 isoleucine-tRNA ligas 100.0 1.9E-83 4.2E-88 767.0 34.6 435 197-671 65-568 (1205)
6 COG0525 ValS Valyl-tRNA synthe 100.0 2.2E-83 4.9E-88 725.6 32.1 376 205-672 4-397 (877)
7 PRK13804 ileS isoleucyl-tRNA s 100.0 7.9E-83 1.7E-87 758.2 33.5 422 205-671 23-487 (961)
8 PRK05743 ileS isoleucyl-tRNA s 100.0 4.3E-82 9.4E-87 750.5 35.0 410 205-672 18-452 (912)
9 PTZ00419 valyl-tRNA synthetase 100.0 3.9E-82 8.5E-87 759.7 34.6 404 193-672 17-443 (995)
10 PLN02843 isoleucyl-tRNA synthe 100.0 3.2E-82 6.9E-87 752.7 32.5 433 207-671 4-466 (974)
11 PLN02381 valyl-tRNA synthetase 100.0 2.2E-81 4.7E-86 748.9 33.1 405 191-672 87-513 (1066)
12 TIGR00392 ileS isoleucyl-tRNA 100.0 4.9E-81 1.1E-85 743.8 33.7 417 205-671 5-460 (861)
13 PRK05729 valS valyl-tRNA synth 100.0 2.2E-80 4.8E-85 736.8 32.9 379 199-672 4-399 (874)
14 KOG0432|consensus 100.0 4E-80 8.8E-85 680.1 27.2 411 186-672 28-455 (995)
15 TIGR00422 valS valyl-tRNA synt 100.0 2.6E-79 5.7E-84 728.2 32.0 379 200-672 1-397 (861)
16 PRK14900 valS valyl-tRNA synth 100.0 6.1E-79 1.3E-83 729.4 32.5 385 197-672 12-414 (1052)
17 PLN02943 aminoacyl-tRNA ligase 100.0 5.7E-79 1.2E-83 725.0 32.0 375 199-672 56-449 (958)
18 PLN02959 aminoacyl-tRNA ligase 100.0 5E-78 1.1E-82 722.2 31.8 429 199-672 8-575 (1084)
19 TIGR00395 leuS_arch leucyl-tRN 100.0 7.4E-78 1.6E-82 716.1 29.5 408 210-672 2-485 (938)
20 PRK13208 valS valyl-tRNA synth 100.0 1.5E-75 3.2E-80 691.3 33.4 377 197-671 3-394 (800)
21 PRK12300 leuS leucyl-tRNA synt 100.0 1.4E-70 3E-75 651.2 27.3 368 250-672 1-438 (897)
22 KOG0434|consensus 100.0 1.5E-70 3.3E-75 586.4 22.3 415 205-670 7-452 (1070)
23 TIGR00396 leuS_bact leucyl-tRN 100.0 7.8E-68 1.7E-72 622.4 24.8 373 206-641 1-427 (842)
24 PLN02563 aminoacyl-tRNA ligase 100.0 3.3E-67 7.1E-72 617.6 23.8 386 199-641 75-520 (963)
25 PRK00390 leuS leucyl-tRNA synt 100.0 2.6E-66 5.6E-71 608.6 25.2 352 205-621 4-408 (805)
26 KOG0433|consensus 100.0 1.8E-63 4E-68 537.9 26.6 410 205-667 29-462 (937)
27 COG0495 LeuS Leucyl-tRNA synth 100.0 8.5E-63 1.8E-67 561.0 23.5 395 205-672 4-453 (814)
28 KOG0437|consensus 100.0 2.1E-53 4.6E-58 458.5 23.4 419 205-680 11-567 (1080)
29 KOG0435|consensus 100.0 1.3E-53 2.8E-58 457.9 16.2 375 207-641 31-435 (876)
30 KOG0432|consensus 100.0 8.5E-44 1.8E-48 393.2 13.9 257 1-286 423-710 (995)
31 COG0525 ValS Valyl-tRNA synthe 100.0 4.2E-38 9.1E-43 357.6 7.4 162 1-179 365-557 (877)
32 COG0060 IleS Isoleucyl-tRNA sy 100.0 5.7E-37 1.2E-41 352.5 2.6 167 1-178 425-633 (933)
33 cd00817 ValRS_core catalytic c 100.0 1.6E-34 3.4E-39 314.3 16.0 155 235-390 1-155 (382)
34 PLN02381 valyl-tRNA synthetase 100.0 7.2E-35 1.6E-39 349.3 12.4 214 1-218 478-725 (1066)
35 PTZ00419 valyl-tRNA synthetase 100.0 1.9E-34 4.1E-39 347.5 12.1 216 1-220 411-657 (995)
36 PTZ00427 isoleucine-tRNA ligas 100.0 1.3E-34 2.9E-39 347.4 7.4 176 2-179 539-752 (1205)
37 PRK05743 ileS isoleucyl-tRNA s 100.0 4.5E-34 9.8E-39 340.2 9.3 164 1-176 422-621 (912)
38 PLN02882 aminoacyl-tRNA ligase 100.0 6.3E-34 1.4E-38 343.0 8.0 175 1-178 434-645 (1159)
39 PRK13804 ileS isoleucyl-tRNA s 100.0 8.5E-34 1.8E-38 338.6 7.0 167 1-177 458-660 (961)
40 PF00133 tRNA-synt_1: tRNA syn 100.0 4.8E-34 1E-38 327.5 0.9 173 1-180 385-594 (601)
41 PLN02843 isoleucyl-tRNA synthe 100.0 2.3E-32 5.1E-37 326.2 9.6 169 1-177 437-650 (974)
42 PRK14900 valS valyl-tRNA synth 100.0 2.7E-32 5.8E-37 327.9 8.6 158 1-180 382-571 (1052)
43 PRK06039 ileS isoleucyl-tRNA s 100.0 2.7E-32 5.9E-37 327.4 8.4 177 1-180 413-625 (975)
44 PLN02943 aminoacyl-tRNA ligase 100.0 1E-31 2.2E-36 320.7 11.1 164 1-178 417-614 (958)
45 PRK05729 valS valyl-tRNA synth 100.0 6.9E-32 1.5E-36 321.8 9.1 155 1-179 367-552 (874)
46 TIGR00422 valS valyl-tRNA synt 100.0 1.7E-31 3.7E-36 318.6 10.6 163 1-180 365-558 (861)
47 KOG0433|consensus 100.0 1.1E-31 2.4E-36 291.7 4.5 173 1-177 437-649 (937)
48 TIGR00392 ileS isoleucyl-tRNA 100.0 2.3E-31 5E-36 317.8 7.4 169 1-177 431-641 (861)
49 cd00817 ValRS_core catalytic c 100.0 9.8E-31 2.1E-35 284.6 11.0 169 1-181 178-377 (382)
50 PRK13208 valS valyl-tRNA synth 100.0 1.2E-30 2.5E-35 309.3 8.6 168 1-180 365-565 (800)
51 cd00818 IleRS_core catalytic c 100.0 7.3E-29 1.6E-33 265.7 14.4 143 235-377 1-143 (338)
52 PLN02959 aminoacyl-tRNA ligase 100.0 9.7E-29 2.1E-33 297.5 10.5 169 2-180 546-751 (1084)
53 KOG0434|consensus 99.9 2.5E-29 5.4E-34 270.7 2.7 185 8-194 427-647 (1070)
54 PLN02563 aminoacyl-tRNA ligase 99.9 4.1E-29 8.9E-34 295.4 4.7 149 32-181 504-757 (963)
55 cd00818 IleRS_core catalytic c 99.9 1.3E-28 2.9E-33 263.7 7.2 143 1-181 160-333 (338)
56 TIGR00396 leuS_bact leucyl-tRN 99.9 2.6E-28 5.6E-33 288.1 4.6 149 31-180 410-637 (842)
57 cd00668 Ile_Leu_Val_MetRS_core 99.9 8.3E-27 1.8E-31 248.0 14.2 136 236-375 1-136 (312)
58 PLN02224 methionine-tRNA ligas 99.9 3.8E-26 8.3E-31 259.3 13.7 168 232-425 66-233 (616)
59 PLN02610 probable methionyl-tR 99.9 4.9E-26 1.1E-30 265.6 13.9 142 231-391 13-155 (801)
60 PRK12300 leuS leucyl-tRNA synt 99.9 2.3E-26 5E-31 273.9 7.9 168 1-181 408-611 (897)
61 COG0143 MetG Methionyl-tRNA sy 99.9 3E-25 6.5E-30 246.6 14.0 140 234-392 4-143 (558)
62 PRK00390 leuS leucyl-tRNA synt 99.9 1.7E-26 3.7E-31 272.2 3.9 142 31-181 414-604 (805)
63 PRK12268 methionyl-tRNA synthe 99.9 7.2E-25 1.6E-29 251.0 13.3 138 235-391 3-141 (556)
64 COG0143 MetG Methionyl-tRNA sy 99.9 8.8E-26 1.9E-30 250.9 5.4 164 1-181 197-367 (558)
65 cd00812 LeuRS_core catalytic c 99.9 1.1E-24 2.4E-29 231.4 12.5 126 236-378 1-126 (314)
66 PF09334 tRNA-synt_1g: tRNA sy 99.9 9E-25 1.9E-29 237.6 10.3 137 237-392 1-137 (391)
67 cd00814 MetRS_core catalytic c 99.9 3E-24 6.4E-29 228.9 13.5 132 236-386 1-132 (319)
68 PRK00133 metG methionyl-tRNA s 99.9 2.9E-24 6.3E-29 249.9 14.5 138 235-391 2-139 (673)
69 PRK12267 methionyl-tRNA synthe 99.9 3.1E-25 6.7E-30 257.6 3.7 158 1-181 168-333 (648)
70 PRK12267 methionyl-tRNA synthe 99.9 8E-24 1.7E-28 245.8 13.6 164 235-424 4-167 (648)
71 KOG0436|consensus 99.9 3.1E-25 6.7E-30 228.4 1.2 160 1-181 209-378 (578)
72 TIGR00395 leuS_arch leucyl-tRN 99.9 1.6E-24 3.4E-29 259.3 7.3 163 1-180 455-653 (938)
73 TIGR00398 metG methionyl-tRNA 99.9 2.1E-23 4.7E-28 237.6 13.6 137 237-392 1-137 (530)
74 PRK12268 methionyl-tRNA synthe 99.9 2.2E-24 4.8E-29 247.0 4.0 167 1-180 196-367 (556)
75 PRK00133 metG methionyl-tRNA s 99.9 3E-24 6.4E-29 249.8 5.0 161 1-180 194-362 (673)
76 PRK11893 methionyl-tRNA synthe 99.9 5E-23 1.1E-27 234.0 13.6 138 235-391 1-138 (511)
77 cd00668 Ile_Leu_Val_MetRS_core 99.9 9.5E-24 2.1E-28 224.6 6.9 156 1-181 149-307 (312)
78 KOG0435|consensus 99.9 2.9E-24 6.3E-29 232.3 1.9 148 32-181 419-651 (876)
79 PLN02224 methionine-tRNA ligas 99.9 1.1E-23 2.3E-28 239.4 4.7 161 1-181 233-400 (616)
80 TIGR00398 metG methionyl-tRNA 99.9 1.6E-23 3.4E-28 238.7 4.7 162 1-180 191-360 (530)
81 cd00814 MetRS_core catalytic c 99.9 2.4E-23 5.2E-28 221.9 5.4 161 1-181 147-314 (319)
82 PF13603 tRNA-synt_1_2: Leucyl 99.9 9.8E-23 2.1E-27 196.7 8.8 135 476-611 2-185 (185)
83 PLN02610 probable methionyl-tR 99.9 7.2E-23 1.6E-27 239.2 5.6 158 1-181 212-383 (801)
84 COG0495 LeuS Leucyl-tRNA synth 99.9 2.8E-23 6.1E-28 238.0 0.6 147 32-181 419-613 (814)
85 PF09334 tRNA-synt_1g: tRNA sy 99.8 2.8E-22 6.1E-27 218.1 -2.5 165 1-181 191-361 (391)
86 PRK11893 methionyl-tRNA synthe 99.8 5.3E-21 1.2E-25 217.4 6.8 160 1-180 166-332 (511)
87 KOG0436|consensus 99.8 1E-19 2.3E-24 187.8 11.6 143 231-392 35-177 (578)
88 cd00812 LeuRS_core catalytic c 99.7 2.8E-18 6E-23 182.5 1.4 158 1-179 141-307 (314)
89 cd00671 ArgRS_core catalytic c 99.7 6.4E-16 1.4E-20 155.1 12.0 123 237-381 2-124 (212)
90 PRK00260 cysS cysteinyl-tRNA s 99.6 1.4E-15 2.9E-20 169.7 11.3 127 233-382 22-149 (463)
91 TIGR00435 cysS cysteinyl-tRNA 99.6 1.3E-14 2.9E-19 161.5 12.3 128 233-382 20-148 (465)
92 PRK01611 argS arginyl-tRNA syn 99.5 2.9E-14 6.2E-19 161.3 12.0 126 233-377 109-235 (507)
93 KOG0437|consensus 99.5 3.5E-15 7.7E-20 163.4 0.4 167 2-179 537-742 (1080)
94 PRK12418 cysteinyl-tRNA synthe 99.5 1.5E-13 3.2E-18 147.9 12.2 123 236-381 11-138 (384)
95 TIGR03447 mycothiol_MshC cyste 99.5 1.2E-13 2.7E-18 149.1 11.5 123 234-379 36-163 (411)
96 cd00672 CysRS_core catalytic c 99.5 1E-13 2.3E-18 138.5 9.2 95 231-346 17-112 (213)
97 PLN02946 cysteine-tRNA ligase 99.4 5.3E-13 1.2E-17 149.2 12.2 120 242-381 86-205 (557)
98 PRK14536 cysS cysteinyl-tRNA s 99.4 1E-12 2.2E-17 145.4 12.7 125 236-380 23-157 (490)
99 PRK14535 cysS cysteinyl-tRNA s 99.4 3.5E-12 7.6E-17 143.5 12.6 124 238-381 250-374 (699)
100 cd00674 LysRS_core_class_I cat 99.3 1E-12 2.3E-17 140.0 7.0 125 234-370 18-151 (353)
101 KOG1247|consensus 99.3 4.2E-13 9.2E-18 139.1 3.4 181 2-206 208-403 (567)
102 PTZ00399 cysteinyl-tRNA-synthe 99.3 6.3E-12 1.4E-16 144.7 11.5 125 236-381 62-187 (651)
103 PRK14534 cysS cysteinyl-tRNA s 99.3 1.5E-11 3.2E-16 135.7 12.3 126 236-381 21-156 (481)
104 KOG1247|consensus 99.2 1.1E-11 2.4E-16 128.8 3.7 142 232-392 11-153 (567)
105 COG0018 ArgS Arginyl-tRNA synt 99.1 2.4E-10 5.3E-15 129.1 12.0 168 207-378 89-296 (577)
106 TIGR00456 argS arginyl-tRNA sy 99.0 9.6E-10 2.1E-14 126.1 12.1 136 234-371 111-283 (566)
107 PRK00750 lysK lysyl-tRNA synth 99.0 1.2E-10 2.7E-15 131.1 3.7 142 235-386 23-186 (510)
108 cd00802 class_I_aaRS_core cata 99.0 8.6E-10 1.9E-14 103.8 6.8 76 240-332 2-77 (143)
109 COG0215 CysS Cysteinyl-tRNA sy 99.0 8.2E-10 1.8E-14 119.5 7.1 73 129-201 250-326 (464)
110 PF00750 tRNA-synt_1d: tRNA sy 98.9 3.8E-09 8.2E-14 114.2 11.2 140 232-373 17-195 (354)
111 PRK12451 arginyl-tRNA syntheta 98.9 1.1E-08 2.3E-13 117.1 13.0 137 234-374 112-283 (562)
112 PF01406 tRNA-synt_1e: tRNA sy 98.8 2.3E-08 4.9E-13 103.3 10.1 125 236-380 8-133 (300)
113 PLN02286 arginine-tRNA ligase 98.8 4.3E-08 9.4E-13 112.3 12.5 135 234-374 116-287 (576)
114 PTZ00399 cysteinyl-tRNA-synthe 98.8 7.4E-09 1.6E-13 119.5 5.7 46 131-177 299-345 (651)
115 cd00672 CysRS_core catalytic c 98.7 5.7E-09 1.2E-13 104.4 2.0 50 130-179 157-206 (213)
116 TIGR00467 lysS_arch lysyl-tRNA 98.6 1.2E-08 2.6E-13 114.3 3.2 97 235-340 18-122 (515)
117 COG0215 CysS Cysteinyl-tRNA sy 98.6 1.4E-07 3.1E-12 102.3 9.8 120 237-380 23-147 (464)
118 PRK12418 cysteinyl-tRNA synthe 98.6 5.8E-09 1.3E-13 112.6 -1.2 49 129-177 243-292 (384)
119 TIGR03447 mycothiol_MshC cyste 98.5 1.3E-08 2.8E-13 110.4 0.0 48 130-177 271-319 (411)
120 PRK14536 cysS cysteinyl-tRNA s 98.5 1.4E-08 3.1E-13 112.8 0.2 90 107-196 239-333 (490)
121 TIGR00435 cysS cysteinyl-tRNA 98.5 1.6E-08 3.5E-13 113.0 0.6 48 130-177 248-295 (465)
122 PRK00260 cysS cysteinyl-tRNA s 98.5 4.7E-08 1E-12 109.5 4.1 49 129-177 248-296 (463)
123 PF01406 tRNA-synt_1e: tRNA sy 98.5 5.7E-08 1.2E-12 100.4 3.0 60 130-189 235-298 (300)
124 PRK14535 cysS cysteinyl-tRNA s 98.4 8.6E-08 1.9E-12 108.6 2.3 65 133-198 494-563 (699)
125 PRK14534 cysS cysteinyl-tRNA s 98.4 5.3E-08 1.1E-12 107.8 -0.4 94 102-196 233-333 (481)
126 KOG2007|consensus 98.3 4.8E-06 1E-10 89.7 11.5 121 243-379 62-184 (586)
127 cd00674 LysRS_core_class_I cat 98.2 7.3E-07 1.6E-11 95.5 4.0 49 129-178 258-306 (353)
128 PLN02946 cysteine-tRNA ligase 98.2 2.8E-07 6.1E-12 103.7 -0.4 57 133-190 310-370 (557)
129 cd09287 GluRS_non_core catalyt 98.2 5.3E-06 1.2E-10 83.9 7.9 92 242-370 6-97 (240)
130 PRK00750 lysK lysyl-tRNA synth 98.1 1.7E-06 3.7E-11 97.8 4.0 50 129-179 263-312 (510)
131 PRK04156 gltX glutamyl-tRNA sy 98.0 2.2E-05 4.8E-10 88.6 9.5 97 238-371 102-198 (567)
132 KOG2007|consensus 97.8 1.3E-05 2.9E-10 86.4 3.1 48 133-181 291-342 (586)
133 TIGR00463 gltX_arch glutamyl-t 97.8 5.4E-05 1.2E-09 85.5 7.6 96 238-372 94-189 (560)
134 PRK12558 glutamyl-tRNA synthet 97.6 0.00018 3.9E-09 79.4 9.1 89 243-370 8-96 (445)
135 TIGR00467 lysS_arch lysyl-tRNA 97.6 3.3E-05 7.2E-10 86.9 3.3 43 136-178 262-305 (515)
136 TIGR03838 queuosine_YadB gluta 97.6 0.00022 4.7E-09 73.9 8.6 89 243-370 6-95 (272)
137 cd00807 GlnRS_core catalytic c 97.5 0.00041 8.9E-09 70.1 9.0 90 242-370 6-95 (238)
138 PTZ00402 glutamyl-tRNA synthet 97.5 0.00029 6.2E-09 79.8 8.6 94 238-370 53-147 (601)
139 PF00749 tRNA-synt_1c: tRNA sy 97.5 0.00033 7.1E-09 74.6 8.6 90 243-370 7-96 (314)
140 PLN03233 putative glutamate-tR 97.5 0.00035 7.6E-09 78.2 9.1 95 238-371 12-106 (523)
141 PRK01611 argS arginyl-tRNA syn 97.5 2.8E-05 6E-10 88.5 0.4 47 133-179 305-371 (507)
142 PTZ00437 glutaminyl-tRNA synth 97.4 0.00049 1.1E-08 77.3 9.4 95 239-372 53-147 (574)
143 TIGR00440 glnS glutaminyl-tRNA 97.4 0.00062 1.3E-08 76.3 9.2 93 242-372 5-97 (522)
144 PLN02907 glutamate-tRNA ligase 97.4 0.0005 1.1E-08 80.6 8.9 94 238-370 214-307 (722)
145 PRK05347 glutaminyl-tRNA synth 97.3 0.00073 1.6E-08 76.0 8.6 96 238-371 30-125 (554)
146 COG0008 GlnS Glutamyl- and glu 97.3 0.00074 1.6E-08 75.1 8.4 96 238-372 10-106 (472)
147 PRK14703 glutaminyl-tRNA synth 97.3 0.00062 1.3E-08 79.8 7.9 97 238-372 32-128 (771)
148 PRK05710 glutamyl-Q tRNA(Asp) 97.2 0.00092 2E-08 70.2 8.3 91 242-370 10-100 (299)
149 PRK12410 glutamylglutaminyl-tR 97.2 0.0012 2.6E-08 72.7 8.9 89 243-370 5-93 (433)
150 PLN02859 glutamine-tRNA ligase 97.2 0.0014 3E-08 76.2 9.5 96 238-372 265-360 (788)
151 cd00418 GlxRS_core catalytic c 97.1 0.0017 3.8E-08 65.5 8.8 100 243-389 7-107 (230)
152 PF01921 tRNA-synt_1f: tRNA sy 97.0 0.00035 7.6E-09 74.5 2.6 45 135-179 270-314 (360)
153 TIGR00464 gltX_bact glutamyl-t 97.0 0.0021 4.5E-08 72.3 8.8 90 243-370 7-96 (470)
154 TIGR00456 argS arginyl-tRNA sy 97.0 0.00024 5.2E-09 81.9 1.0 52 127-179 353-427 (566)
155 PRK14895 gltX glutamyl-tRNA sy 96.9 0.0035 7.6E-08 70.3 9.3 92 242-371 9-100 (513)
156 PRK01406 gltX glutamyl-tRNA sy 96.8 0.0034 7.5E-08 70.5 8.5 90 242-370 9-106 (476)
157 PLN02627 glutamyl-tRNA synthet 96.8 0.004 8.7E-08 70.0 8.8 92 240-370 48-148 (535)
158 cd00808 GluRS_core catalytic c 96.8 0.0067 1.5E-07 61.7 9.6 85 243-366 7-100 (239)
159 COG1384 LysS Lysyl-tRNA synthe 96.6 0.0065 1.4E-07 67.0 8.2 99 235-340 19-125 (521)
160 KOG1195|consensus 96.4 0.042 9.2E-07 60.2 13.2 138 232-372 107-279 (567)
161 KOG1147|consensus 96.4 0.01 2.2E-07 65.1 7.9 99 238-375 201-299 (712)
162 COG1384 LysS Lysyl-tRNA synthe 96.2 0.0014 3E-08 72.1 0.4 49 131-180 262-310 (521)
163 KOG4426|consensus 96.1 0.065 1.4E-06 57.5 12.1 146 233-385 186-369 (656)
164 PF01921 tRNA-synt_1f: tRNA sy 95.7 0.0021 4.6E-08 68.6 -1.0 105 233-340 21-128 (360)
165 PF13603 tRNA-synt_1_2: Leucyl 95.6 0.0064 1.4E-07 59.3 2.2 39 418-456 12-50 (185)
166 KOG1148|consensus 94.8 0.038 8.2E-07 61.4 5.2 97 237-372 248-344 (764)
167 COG0018 ArgS Arginyl-tRNA synt 93.0 0.056 1.2E-06 62.0 2.4 54 126-179 359-437 (577)
168 PLN02286 arginine-tRNA ligase 92.6 0.079 1.7E-06 61.3 3.0 46 134-179 365-439 (576)
169 PF00750 tRNA-synt_1d: tRNA sy 91.3 0.092 2E-06 57.1 1.4 30 135-164 275-305 (354)
170 PRK12451 arginyl-tRNA syntheta 90.4 0.12 2.7E-06 59.6 1.5 30 134-164 359-388 (562)
171 PRK12283 tryptophanyl-tRNA syn 83.6 0.72 1.6E-05 50.4 2.4 42 131-177 247-289 (398)
172 KOG1149|consensus 83.4 4.2 9E-05 44.3 7.9 94 243-371 39-137 (524)
173 cd00805 TyrRS_core catalytic c 82.1 1.2 2.5E-05 46.5 3.2 24 133-156 181-204 (269)
174 PRK12284 tryptophanyl-tRNA syn 81.8 0.61 1.3E-05 51.3 1.1 29 131-159 184-214 (431)
175 PRK12556 tryptophanyl-tRNA syn 81.4 0.68 1.5E-05 49.7 1.2 28 131-158 184-213 (332)
176 cd00418 GlxRS_core catalytic c 80.5 1.3 2.8E-05 44.9 2.8 44 134-178 139-184 (230)
177 COG0180 TrpS Tryptophanyl-tRNA 79.7 0.75 1.6E-05 48.6 0.8 24 134-157 182-209 (314)
178 PRK12285 tryptophanyl-tRNA syn 79.1 4.8 0.0001 43.9 6.9 44 234-282 64-107 (368)
179 cd00395 Tyr_Trp_RS_core cataly 76.8 1.4 3E-05 46.1 1.8 24 135-158 186-209 (273)
180 PRK13354 tyrosyl-tRNA syntheta 76.3 1.2 2.6E-05 49.3 1.2 42 133-176 216-257 (410)
181 PF00579 tRNA-synt_1b: tRNA sy 75.1 1.5 3.2E-05 46.3 1.5 27 133-159 183-211 (292)
182 cd00808 GluRS_core catalytic c 72.4 3.4 7.4E-05 42.2 3.3 41 136-177 151-192 (239)
183 PLN02486 aminoacyl-tRNA ligase 71.9 13 0.00028 40.8 7.8 43 234-280 71-114 (383)
184 PRK05912 tyrosyl-tRNA syntheta 71.8 1.9 4.1E-05 47.8 1.4 41 135-177 220-260 (408)
185 PRK08560 tyrosyl-tRNA syntheta 71.6 8.6 0.00019 41.3 6.4 41 235-280 29-69 (329)
186 PRK08560 tyrosyl-tRNA syntheta 66.9 2.9 6.3E-05 44.9 1.5 27 133-159 198-227 (329)
187 cd00806 TrpRS_core catalytic c 66.2 4.4 9.6E-05 42.5 2.7 36 135-175 175-215 (280)
188 TIGR00233 trpS tryptophanyl-tR 63.8 2.5 5.3E-05 45.5 0.2 31 140-175 185-216 (328)
189 PRK12285 tryptophanyl-tRNA syn 63.4 2.3 5E-05 46.4 -0.1 35 136-175 240-275 (368)
190 cd00802 class_I_aaRS_core cata 62.2 4.8 0.00011 37.4 1.9 21 132-152 123-143 (143)
191 PRK12282 tryptophanyl-tRNA syn 61.5 3.4 7.4E-05 44.4 0.8 35 137-176 185-220 (333)
192 PTZ00126 tyrosyl-tRNA syntheta 60.5 6.5 0.00014 43.1 2.8 38 134-176 242-282 (383)
193 PLN02886 aminoacyl-tRNA ligase 58.7 9.1 0.0002 41.9 3.5 33 239-276 49-81 (389)
194 PRK12284 tryptophanyl-tRNA syn 56.0 22 0.00047 39.5 5.8 98 245-370 10-107 (431)
195 PRK00927 tryptophanyl-tRNA syn 55.7 6.5 0.00014 42.3 1.8 41 131-176 173-220 (333)
196 PRK00927 tryptophanyl-tRNA syn 53.6 11 0.00024 40.5 3.2 31 245-279 9-39 (333)
197 TIGR00233 trpS tryptophanyl-tR 53.0 30 0.00065 37.2 6.3 39 237-280 3-41 (328)
198 PLN02486 aminoacyl-tRNA ligase 52.8 9.5 0.00021 41.8 2.4 36 136-176 252-290 (383)
199 cd00806 TrpRS_core catalytic c 52.8 30 0.00066 36.2 6.1 33 245-280 7-39 (280)
200 PF10458 Val_tRNA-synt_C: Valy 52.5 7.6 0.00016 31.1 1.2 38 649-686 29-66 (66)
201 cd00805 TyrRS_core catalytic c 50.4 15 0.00033 38.2 3.4 33 245-281 8-41 (269)
202 cd00395 Tyr_Trp_RS_core cataly 50.4 14 0.0003 38.6 3.2 32 245-280 7-39 (273)
203 PRK12410 glutamylglutaminyl-tR 49.1 10 0.00023 42.1 2.1 44 134-178 221-266 (433)
204 PRK04156 gltX glutamyl-tRNA sy 47.0 20 0.00042 41.4 3.9 46 132-178 323-385 (567)
205 COG0180 TrpS Tryptophanyl-tRNA 44.7 47 0.001 35.3 6.0 46 235-286 4-50 (314)
206 TIGR00234 tyrS tyrosyl-tRNA sy 43.6 12 0.00025 41.2 1.3 25 136-160 210-234 (377)
207 PRK05912 tyrosyl-tRNA syntheta 43.6 24 0.00052 39.2 3.8 41 235-280 32-73 (408)
208 PRK12556 tryptophanyl-tRNA syn 43.1 32 0.0007 37.0 4.6 16 245-260 11-26 (332)
209 TIGR00234 tyrS tyrosyl-tRNA sy 42.6 21 0.00045 39.2 3.1 40 236-280 30-70 (377)
210 PF00579 tRNA-synt_1b: tRNA sy 41.9 17 0.00037 38.3 2.3 42 235-281 4-45 (292)
211 PRK13354 tyrosyl-tRNA syntheta 40.9 31 0.00068 38.3 4.2 44 235-283 32-76 (410)
212 TIGR00464 gltX_bact glutamyl-t 38.9 33 0.00072 38.8 4.1 41 137-178 231-272 (470)
213 COG0162 TyrS Tyrosyl-tRNA synt 38.5 16 0.00035 40.2 1.5 24 133-156 210-233 (401)
214 PRK14895 gltX glutamyl-tRNA sy 37.8 29 0.00063 39.5 3.4 43 133-176 226-269 (513)
215 PRK01406 gltX glutamyl-tRNA sy 36.4 36 0.00078 38.6 3.9 40 137-177 241-281 (476)
216 PF05308 Mito_fiss_reg: Mitoch 35.9 26 0.00056 36.1 2.4 27 663-689 119-145 (253)
217 PRK12558 glutamyl-tRNA synthet 34.3 27 0.00058 39.1 2.4 44 134-178 226-271 (445)
218 cd00671 ArgRS_core catalytic c 28.8 36 0.00078 34.0 2.1 21 133-153 192-212 (212)
219 KOG2145|consensus 27.3 41 0.00089 34.9 2.1 29 232-260 81-109 (397)
220 PLN02627 glutamyl-tRNA synthet 27.3 48 0.001 37.9 2.9 43 134-177 279-323 (535)
221 PRK12283 tryptophanyl-tRNA syn 26.5 1.2E+02 0.0025 33.6 5.5 15 245-259 10-24 (398)
222 COG0008 GlnS Glutamyl- and glu 26.3 54 0.0012 37.1 3.0 42 133-175 235-278 (472)
223 PRK05710 glutamyl-Q tRNA(Asp) 25.2 52 0.0011 34.8 2.6 40 133-176 221-261 (299)
224 PTZ00126 tyrosyl-tRNA syntheta 25.0 51 0.0011 36.2 2.5 41 235-280 65-106 (383)
225 PF05619 DUF787: Borrelia burg 23.9 1.5E+02 0.0033 31.0 5.3 75 277-370 247-321 (362)
226 PRK12282 tryptophanyl-tRNA syn 23.3 49 0.0011 35.7 1.9 16 245-260 10-25 (333)
227 PTZ00348 tyrosyl-tRNA syntheta 23.3 36 0.00078 40.2 1.0 39 132-175 204-246 (682)
228 PLN02886 aminoacyl-tRNA ligase 21.2 46 0.00099 36.6 1.2 18 140-157 242-264 (389)
229 cd06545 GH18_3CO4_chitinase Th 21.0 3.4E+02 0.0073 27.7 7.6 34 335-369 102-135 (253)
230 PTZ00348 tyrosyl-tRNA syntheta 20.4 86 0.0019 37.1 3.3 39 235-278 31-70 (682)
No 1
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-88 Score=774.44 Aligned_cols=411 Identities=28% Similarity=0.399 Sum_probs=372.0
Q ss_pred CchHHHHHHhhhccccccccccccc--cCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcc
Q psy944 205 TDALRFALAAYMSQGERTGRRKSIG--EKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCD 282 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~~~~~~~--~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D 282 (689)
+.++...|++++++|++++.++... .+++++.|+++|||||+||.+|+|||+|++++|++.||++|+||+|.+.+|||
T Consensus 17 r~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWD 96 (933)
T COG0060 17 RANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWD 96 (933)
T ss_pred cCChhhcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCc
Confidence 5688999999999999999666554 46888999999999999999999999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHH
Q psy944 283 HAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVIL 362 (689)
Q Consensus 283 ~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L 362 (689)
|||||||.+++++++. .+....+++.++|+++|++++..+++.|+++|+|||++.||+++|.|||+.|++.++|+|++|
T Consensus 97 cHGLPIE~~vek~lg~-~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~ 175 (933)
T COG0060 97 CHGLPIELKVEKKLGI-GKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKEL 175 (933)
T ss_pred CCCchHHHHHHHHhCC-CcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHH
Confidence 9999999999999876 666778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceecccccc--CCCCceEEEeeccCcccc
Q psy944 363 HEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKL--DDGSGEIVVATTRLETLF 440 (689)
Q Consensus 363 ~~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~Tt~P~Tl~ 440 (689)
+++||||+|.+||+|||+|+|+||++||+|.+ +.++++++.|..+- .+.+.+++||||||||||
T Consensus 176 ~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d--------------~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLP 241 (933)
T COG0060 176 YEKGLLYRGYKPVPWSPRCETALAEAEVEYGD--------------VKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLP 241 (933)
T ss_pred HHCCCeecCCeeeeecCCCCcchhhhhhcccc--------------cCCceEEEEEEeccCCCCCCcEEEEEeCCCCCch
Confidence 99999999999999999999999999998754 35666777665432 245789999999999999
Q ss_pred ccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhccccc--ccCc
Q psy944 441 ADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVA--VHPE 518 (689)
Q Consensus 441 ~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~--~~~~ 518 (689)
+|+|||||||.+|.. ++.+++.+++|+.+++.++...++. ....
T Consensus 242 aN~aiav~pd~~Y~l----------------------------------v~~~~~~~IlA~~lve~~~~~~~~~~~~vl~ 287 (933)
T COG0060 242 ANLAIAVHPDLDYVL----------------------------------VEVNGEKLILAKALVESVAKKAGVEDYEVLE 287 (933)
T ss_pred hcceeEeCCCcceEE----------------------------------EEECCEEEEEhHHHHHHHHHHcCCcceEEeE
Confidence 999999999987643 2234588999999999998887764 2356
Q ss_pred ccccccccCceeecCcCC----CceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcC-CCceeeccCCcccccCCCC
Q psy944 519 DERYKHLVGKLLVHPFCE----RKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLN-LPLITVFNEEGVIIGDYGE 593 (689)
Q Consensus 519 ~~~~~~l~g~~~~~P~~~----~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~-l~i~~~id~~G~~~~~~~~ 593 (689)
+.+|++|.|..|.|||.. +.+||+.+|||+.+.|||+||+|||||++||.+|+++| +|++++||++|+|+++.+.
T Consensus 288 ~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~~ 367 (933)
T COG0060 288 TFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPK 367 (933)
T ss_pred EeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccchh
Confidence 889999999999999995 89999999999999999999999999999999999999 7999999999999999999
Q ss_pred CCCCchhhhHHHHHHHhhccccccCceeeeE-----------Eeeee---ecccccccCcHHHHHHHHH-hcCCCeeecc
Q psy944 594 FTGMKRFDARTRVTELISLSISSQGLIKVDK-----------EIERL---NKKEEYLKQVIAKLKDQAA-AEDYATKVPE 658 (689)
Q Consensus 594 ~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~-----------~i~~l---~~~QWFi~~~~~~~k~~~~-~~~~i~~~P~ 658 (689)
|.|+.++||++.|++.|+ ++|.+...+ |..|+ .++|||+++ +++|++++ ++++++|+|+
T Consensus 368 ~~G~~v~dAn~~Ii~~Lk----~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v--~~~r~~~l~~i~~v~w~P~ 441 (933)
T COG0060 368 YEGLFVKDANKKIIEDLK----EKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSV--DKLRDKMLKEINKVNWVPD 441 (933)
T ss_pred hCCceeccCCHHHHHHHH----hCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEH--HHHHHHHHHHHhcceEECh
Confidence 999999999999999999 878766444 44554 599999995 79999998 8889999999
Q ss_pred cccchhhhhhhc
Q psy944 659 NVRTQNSEKLSE 670 (689)
Q Consensus 659 ~~~~~~~~~~~~ 670 (689)
++++++.+++++
T Consensus 442 ~~~~R~~~mve~ 453 (933)
T COG0060 442 WGKNRFGNMVEN 453 (933)
T ss_pred hHHHHHHHHHcC
Confidence 999999998865
No 2
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.9e-85 Score=779.11 Aligned_cols=413 Identities=25% Similarity=0.340 Sum_probs=365.2
Q ss_pred CCCCCCCchHHHHHHhhhcccccccccccccc-CCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEee
Q psy944 199 GIPECGTDALRFALAAYMSQGERTGRRKSIGE-KNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLW 277 (689)
Q Consensus 199 ~l~~~~~~~~~~iE~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~ 277 (689)
.+++ .|++..+|++|+++|+++++|+...+ +.++++|+|++|||||||.||+||+++++++|+++||+||+||+|++
T Consensus 6 ~~~~--~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~ 83 (975)
T PRK06039 6 EVDS--QPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVER 83 (975)
T ss_pred ccCC--CCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccC
Confidence 4566 89999999999999999997775433 46778999999999999999999999999999999999999999999
Q ss_pred CCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHH
Q psy944 278 NPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTE 357 (689)
Q Consensus 278 ~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~ 357 (689)
++||||||+|||.++++.++......++++++++|+++|++|+.++++.|+++|++||+++||+++|.|+||.|+++++|
T Consensus 84 ~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~ 163 (975)
T PRK06039 84 RAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWW 163 (975)
T ss_pred cCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHH
Confidence 99999999999999998775544456778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeeeecccccccCCCCcccCCCcee--eeeecCCccccccCCCCCCcccceeccccccC-CCCceEEEeec
Q psy944 358 AFVILHEAGDIYRSERLVHWSCSLKSAISDIEVD--KVELTGRTPLRVPGYANPVDFGVLASFAYKLD-DGSGEIVVATT 434 (689)
Q Consensus 358 ~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~Tt 434 (689)
+|.+|+++||||++.++|+|||+|+|+||++||+ |++. .++..++.| ++. +.+.+++||||
T Consensus 164 ~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~--------------~~~~~~v~f--~l~~~~~~~l~i~TT 227 (975)
T PRK06039 164 ALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDV--------------KDPSVYVKF--KLKGEENEYLLAWTT 227 (975)
T ss_pred HHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhccccc--------------CCceEEEEE--EecCCCCCEEEEEEC
Confidence 9999999999999999999999999999999997 4433 344444444 443 24579999999
Q ss_pred cCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhccccc
Q psy944 435 RLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVA 514 (689)
Q Consensus 435 ~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~ 514 (689)
||||||||+||||||+++|+.. ..+++.+++++.+++.+... ...
T Consensus 228 rP~Tl~~n~avaV~P~~~Y~~~----------------------------------~~~~~~yi~a~~~~~~~~~~-~~~ 272 (975)
T PRK06039 228 TPWTLPSNLALAVHPDIDYVKV----------------------------------EGGGEVYILAEALLEKVLKE-DYE 272 (975)
T ss_pred CccccccceEEEECCCCceEEE----------------------------------ecCCeEEEEhHHHHHHHhhc-ccE
Confidence 9999999999999999887531 12357899999999988752 111
Q ss_pred ccCcccccccccCceeecCcCC-----CceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCccccc
Q psy944 515 VHPEDERYKHLVGKLLVHPFCE-----RKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIG 589 (689)
Q Consensus 515 ~~~~~~~~~~l~g~~~~~P~~~-----~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~~~~ 589 (689)
+ ..+.+|++|+|++|.||++. +.+||++++||++++|||+||+|||||++||+++++||||++++||++|+|++
T Consensus 273 ~-~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~ 351 (975)
T PRK06039 273 V-VETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTE 351 (975)
T ss_pred E-EeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcC
Confidence 1 25678999999999999973 47999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCchhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hcCCCe
Q psy944 590 DYGEFTGMKRFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AEDYAT 654 (689)
Q Consensus 590 ~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~~~i~ 654 (689)
.+|+|+|+.++||+++|++.|+ ++|++.+.+ ++++++++|||+++ +++|++++ .+++++
T Consensus 352 ~~~~~~G~~v~eA~~~Ii~~L~----~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~--~~~k~~ll~~~~~i~ 425 (975)
T PRK06039 352 EVPDYAGKFVKDADKEIIRDLK----ERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRV--TKIKDRMLELNQKIN 425 (975)
T ss_pred CCccccCCCHHHhhHHHHHHHH----hCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEec--HHHHHHHHHhhCCeE
Confidence 8899999999999999999999 999887554 45667899999997 78999997 678899
Q ss_pred eecccccc-hhhhhhhch
Q psy944 655 KVPENVRT-QNSEKLSEA 671 (689)
Q Consensus 655 ~~P~~~~~-~~~~~~~~~ 671 (689)
|+|+++++ ++.++++++
T Consensus 426 ~~P~~~~~~~~~~wl~~l 443 (975)
T PRK06039 426 WYPEHIKDGRFGKWLENA 443 (975)
T ss_pred EECcccchhhHHHHHhcC
Confidence 99999999 888888764
No 3
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=3.6e-85 Score=749.16 Aligned_cols=398 Identities=35% Similarity=0.551 Sum_probs=344.5
Q ss_pred hhhcccccccccccc-ccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHH
Q psy944 214 AYMSQGERTGRRKSI-GEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVV 292 (689)
Q Consensus 214 ~~~~~W~~~~~~~~~-~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~ 292 (689)
+|+++|+++++|+.. ..++++++|++++||||+||.||+||++|++++|+++||+||+|++|++++||||||+|||.++
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~v 80 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKV 80 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhH
Confidence 589999999977765 3456788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeec
Q psy944 293 EKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSE 372 (689)
Q Consensus 293 e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~ 372 (689)
++.++.+.+..+.++++++|++.|++|++++.+.|+++|++||+++||+++|.|+||.|+++++|+|.+|+++||||++.
T Consensus 81 ek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~ 160 (601)
T PF00133_consen 81 EKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGK 160 (601)
T ss_dssp HHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeC
Confidence 99887767777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCCC-ceEEEeeccCccccccchhhcCCCc
Q psy944 373 RLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGS-GEIVVATTRLETLFADVAVAVHPED 451 (689)
Q Consensus 373 ~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Tt~P~Tl~~n~~~~v~p~~ 451 (689)
+||+|||+|+|+||++|+++++..+.. .+ ++|++.+.+ .+|+||||||||||||+||||||+.
T Consensus 161 ~pv~w~p~~~t~lsd~Ev~~~~~~~~~--------------~~--v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~ 224 (601)
T PF00133_consen 161 KPVNWCPSCQTALSDHEVEYKEVKSPS--------------IY--VKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDF 224 (601)
T ss_dssp EEEEEETTTTEEE-GGGEEEEEEEEEE--------------EE--EEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTS
T ss_pred CCCCcCcccccchhhhhcccccccCce--------------EE--EEEEecCccceEEEEEechhhHHhCCeeEEECCCc
Confidence 999999999999999999988765432 22 234555544 5999999999999999999999997
Q ss_pred hhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhcccccccCcccccccccCceee
Q psy944 452 ERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLLV 531 (689)
Q Consensus 452 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~l~g~~~~ 531 (689)
+|+ .+++.++++..+.+.+....... ..+.+|++|+|++|.
T Consensus 225 ~Y~-------------------------------------~~~~~~i~~~~~~~~~~~~~~~~--~~~~~g~~L~g~~~~ 265 (601)
T PF00133_consen 225 DYV-------------------------------------INGERYIVAKDLVEKLSKQEKTK--LEDFRGKELVGLKYI 265 (601)
T ss_dssp EEE-------------------------------------ETTEEEEEEHHHHHHHHTTTSSS--EEEEECHHHTTSEEE
T ss_pred cce-------------------------------------eCCeeehHHHHHHHHHHhhhhhc--ccccCcceecCcEec
Confidence 753 25678899999999887655444 568899999999999
Q ss_pred cCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCcccccCCCCCCCCchhhhHHHHHHHhh
Q psy944 532 HPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTELIS 611 (689)
Q Consensus 532 ~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~~~~~~~~~~G~~v~~a~~~i~~~L~ 611 (689)
||++++.+||++++||++++|||+||+|||||++||.+++++++|++++||++|++++.+++|.|+.+++||++|++.|+
T Consensus 266 ~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~~ar~~ii~~L~ 345 (601)
T PF00133_consen 266 HPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAGKFKGMKVFEAREKIIEDLK 345 (601)
T ss_dssp -TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCSTTTTSBHHHHHHHHHHHHH
T ss_pred cccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCceEeecccccCCceeeeccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hcCCCeeecccccchhhhhhhchH
Q psy944 612 LSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AEDYATKVPENVRTQNSEKLSEAE 672 (689)
Q Consensus 612 ~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~~~i~~~P~~~~~~~~~~~~~~~ 672 (689)
++|++...+ ++++++++||||+| ++||++++ ++++|+|+|++.++++.+++.+++
T Consensus 346 ----~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~--~~~k~~~l~~~~~i~~~P~~~~~~~~~~i~~l~ 415 (601)
T PF00133_consen 346 ----EKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKY--DDWKKKALEALEKIKFYPESYRKRFENWIDNLR 415 (601)
T ss_dssp ----HTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEH--HHHHHHHHHHHHTSEESSSTCHHHHHHHHHT--
T ss_pred ----HhhhhccccccccccceecCCCCEEEecccceeEEec--HHhHHHHHhhcccceEEcccchhhhhhhccccc
Confidence 999887544 56778899999997 66999987 678999999999999998888754
No 4
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.2e-83 Score=772.16 Aligned_cols=416 Identities=23% Similarity=0.296 Sum_probs=361.7
Q ss_pred CchHHHHHHhhhccccccccccccc-cCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccc
Q psy944 205 TDALRFALAAYMSQGERTGRRKSIG-EKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDH 283 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~~~~~~~-~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~ 283 (689)
.|++..+|++|+++|+++++|+... .+.++++|+|++||||+||.||+||+++++++|+++||+||+||+|+|++||||
T Consensus 7 ~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~ 86 (1159)
T PLN02882 7 DFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDC 86 (1159)
T ss_pred CCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCC
Confidence 6899999999999999999777643 345678899999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHH
Q psy944 284 AGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILH 363 (689)
Q Consensus 284 ~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~ 363 (689)
||+|||..+++.++...+..+.++++++|+++|++|+.++.+.+++++++||+|+||+++|.|+||.|+++++|+|.+|+
T Consensus 87 hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~ 166 (1159)
T PLN02882 87 HGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLF 166 (1159)
T ss_pred CCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHH
Confidence 99999999998876544456667999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCCCceEEEeeccCccccccc
Q psy944 364 EAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRLETLFADV 443 (689)
Q Consensus 364 ~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Tt~P~Tl~~n~ 443 (689)
++|+||++.++|+|||.|+|+||++|++. +|++..+++++++|.......+.+++||||||||||||+
T Consensus 167 ~kGliyr~~~~v~wcp~~~TaLs~~E~~~------------~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~ 234 (1159)
T PLN02882 167 EKGLVYKGFKVMPYSTACKTPLSNFEAGL------------NYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNL 234 (1159)
T ss_pred HCCCEEecceeEeecCCCCCCcchhhhhh------------hcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCe
Confidence 99999999999999999999999999841 133445556666554321112369999999999999999
Q ss_pred hhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhccc-----------
Q psy944 444 AVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVA----------- 512 (689)
Q Consensus 444 ~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~----------- 512 (689)
||||||+.+|+.. ....+++.+++|+.|.+.+++...
T Consensus 235 Al~VnP~~~Y~~v--------------------------------~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~ 282 (1159)
T PLN02882 235 ALCVNPNFTYVKV--------------------------------RNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENA 282 (1159)
T ss_pred EEEECCCCcEEEE--------------------------------EecCCCeEEEEhHHHHHHHHhhhhccccccccccc
Confidence 9999999987642 111135789999999998874421
Q ss_pred ---ccccCcccccccccCceeecCcC------CCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCC-----Cce
Q psy944 513 ---VAVHPEDERYKHLVGKLLVHPFC------ERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNL-----PLI 578 (689)
Q Consensus 513 ---~~~~~~~~~~~~l~g~~~~~P~~------~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l-----~i~ 578 (689)
+.+ .++.+|++|+|++|.+|+. ++.+||++++||+++.|||+||+|||||++||++|+++|| |++
T Consensus 283 ~~~~~v-~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~ 361 (1159)
T PLN02882 283 AEGYEV-LAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLP 361 (1159)
T ss_pred ccccEE-EEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecCCCChhHHHHHHHcCCCccccCcc
Confidence 111 2567899999999987762 4689999999999999999999999999999999999999 799
Q ss_pred eeccCCcccccCCCCCCCCchhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHH
Q psy944 579 TVFNEEGVIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLK 644 (689)
Q Consensus 579 ~~id~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k 644 (689)
++||++|+|+++.++|+|+.++||++.|++.|+ ++|++.+.+ ++++++++||||++ +++|
T Consensus 362 ~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk----~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~--~~~k 435 (1159)
T PLN02882 362 VPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIK----AKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKV--EEIK 435 (1159)
T ss_pred ceECCCceEccCCcccCCCCHHHhhHHHHHHHH----HCCCccceeeeecCCCEeeCCCCEEEEEecceeEEEc--HHHH
Confidence 999999999999999999999999999999999 999887544 45556799999996 8999
Q ss_pred HHHH-hcCCCeeeccccc-chhhhhhhch
Q psy944 645 DQAA-AEDYATKVPENVR-TQNSEKLSEA 671 (689)
Q Consensus 645 ~~~~-~~~~i~~~P~~~~-~~~~~~~~~~ 671 (689)
++++ ++++|+|+|++++ +++.+|+++.
T Consensus 436 ~~~l~~~~~i~w~P~~~~~~r~~~wl~~~ 464 (1159)
T PLN02882 436 DRLLENNKQTYWVPDYVKEKRFHNWLENA 464 (1159)
T ss_pred HHHHHhhCCcEEECCcchhhHHHHHHhcC
Confidence 9998 6789999999995 7999888774
No 5
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=1.9e-83 Score=767.04 Aligned_cols=435 Identities=19% Similarity=0.248 Sum_probs=366.9
Q ss_pred CCCCCCCCCchHHHHHHhhhcccccccccccccc-CCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeE
Q psy944 197 PQGIPECGTDALRFALAAYMSQGERTGRRKSIGE-KNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTT 275 (689)
Q Consensus 197 ~~~l~~~~~~~~~~iE~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V 275 (689)
...++. .|++..+|++|+++|+++++|+...+ +.++++|+|++||||+||.||+||+++++++|+++||+||+||+|
T Consensus 65 ~~~~~~--~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V 142 (1205)
T PTZ00427 65 FTGVSE--NPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSV 142 (1205)
T ss_pred ccCCCC--CCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCee
Confidence 446777 89999999999999999997776433 356778999999999999999999999999999999999999999
Q ss_pred eeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHH
Q psy944 276 LWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAV 355 (689)
Q Consensus 276 ~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v 355 (689)
+|++||||||+|||..+++.++........++++++|+++|++|+.++.+.+++++++||+|+||+++|.|+||.|++++
T Consensus 143 ~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v 222 (1205)
T PTZ00427 143 ERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESV 222 (1205)
T ss_pred ccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHH
Confidence 99999999999999999998865555556679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeeeecccccccCCCCcccCCCce--eeeeecCCc-cccccCCC-------------CCCcccceeccc
Q psy944 356 TEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEV--DKVELTGRT-PLRVPGYA-------------NPVDFGVLASFA 419 (689)
Q Consensus 356 ~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev--~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~~ 419 (689)
+|+|.+|+++|+||++.++|+|||+|+|+||++|| +|++..+++ +++++--. ...+++.+-.+.
T Consensus 223 ~~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (1205)
T PTZ00427 223 WWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVL 302 (1205)
T ss_pred HHHHHHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeec
Confidence 99999999999999999999999999999999999 677776654 22221100 001111110011
Q ss_pred ccc-----------------CCCCceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccce
Q psy944 420 YKL-----------------DDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGV 482 (689)
Q Consensus 420 ~~~-----------------~~~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (689)
+.. ..++.+++||||||||||||+||||||+.+|+.
T Consensus 303 y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~--------------------------- 355 (1205)
T PTZ00427 303 YNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLR--------------------------- 355 (1205)
T ss_pred cccccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEE---------------------------
Confidence 111 012468999999999999999999999998764
Q ss_pred eeeEeEEeecCCceEEEEeccHHHHhhccccc----ccCcccccccccCceeecCc---------CCCceeeeeCCcccc
Q psy944 483 LASFAYKLEDGSGEIVVATTRLETLFADVAVA----VHPEDERYKHLVGKLLVHPF---------CERKIPILADSFVEK 549 (689)
Q Consensus 483 ~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~----~~~~~~~~~~l~g~~~~~P~---------~~~~~pv~~~~~V~~ 549 (689)
|....+++.+++|+.+++.++...+.. ...++.+|++|.|++|.+|+ .++.+||++++||++
T Consensus 356 -----v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~V~~ 430 (1205)
T PTZ00427 356 -----IHHVKSNRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDFVTD 430 (1205)
T ss_pred -----EEecCCCeEEEEehHHHHHHHHhhcccccccEEEEEeechhhCCCeeeCCccccccccccCCceeEEEccCccCC
Confidence 221124578999999999987654321 11246789999999999887 256899999999999
Q ss_pred cCCCcceEeCCCCCHHHHHHHHHcCC--C----ceeeccCCcccccCCCCCCCCchhhhHHHHHHHhhccccccCceeee
Q psy944 550 DFGTGAVKISPGHDHNDYEVAQRLNL--P----LITVFNEEGVIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVD 623 (689)
Q Consensus 550 ~~GTGiV~~~Pah~~~D~~~~~~~~l--~----i~~~id~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~ 623 (689)
++||||||+|||||++||++|++||| | +++++|++|+|+++.++|+|+.++||++.|++.|+ ++|++.+.
T Consensus 431 ~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk----~~g~L~~~ 506 (1205)
T PTZ00427 431 DAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLK----NENRLLSN 506 (1205)
T ss_pred CCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCcccCCCCHHHhHHHHHHHHH----hCCCeeee
Confidence 99999999999999999999999999 2 78899999999999999999999999999999999 99988755
Q ss_pred E--------------EeeeeecccccccCcHHHHHHHHH-hcCCCeeecccc-cchhhhhhhch
Q psy944 624 K--------------EIERLNKKEEYLKQVIAKLKDQAA-AEDYATKVPENV-RTQNSEKLSEA 671 (689)
Q Consensus 624 ~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~~~i~~~P~~~-~~~~~~~~~~~ 671 (689)
+ ++++++++||||++ +++|++++ ++++|+|+|+++ ++++.+|+++.
T Consensus 507 e~~~H~yP~cwR~~tpli~~a~~QWFI~~--~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~n~ 568 (1205)
T PTZ00427 507 NTIVHSYPFCWRSDTPLIYRAIPAWFIRV--SNSTNELVKNNETTYWIPAHIKEKKFHNWIKDA 568 (1205)
T ss_pred eeeeccCCEeCCCCCEEEEEecceeEEeC--cHHHHHHHHcCCccEEeCchhhHhHHHHHHhcC
Confidence 5 56677899999997 57888877 678999999999 58999988875
No 6
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-83 Score=725.55 Aligned_cols=376 Identities=49% Similarity=0.801 Sum_probs=339.2
Q ss_pred CchHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccc
Q psy944 205 TDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHA 284 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~ 284 (689)
+|||..+|.+|++.|+++++|+...+.+. ++|+|..||||+||.||||||++.++.|+++||+||+||+|+|++||||+
T Consensus 4 ~ydp~~iE~k~~~~W~~~~~f~~~~~~~~-~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhA 82 (877)
T COG0525 4 TYDPKEIEEKWYKKWEESGYFKPDPNEDK-PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHA 82 (877)
T ss_pred CCChhhhhHHHHHHHHhcCCccCCCCCCC-CCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCC
Confidence 89999999999999999998887422221 56999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHH
Q psy944 285 GIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHE 364 (689)
Q Consensus 285 Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~ 364 (689)
|+|+|..+|+++..+ |..+.++++++|++.|++|.+++.+.|++|+++||+++||+++++||||.++++|+.+|.+|++
T Consensus 83 GIaTq~~VEk~l~~~-g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~ 161 (877)
T COG0525 83 GIATQVVVEKQLAAE-GITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYE 161 (877)
T ss_pred CchHHHHHHHHHHHc-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHH
Confidence 999999999998766 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCCCceEEEeeccCccccccch
Q psy944 365 AGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRLETLFADVA 444 (689)
Q Consensus 365 kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Tt~P~Tl~~n~~ 444 (689)
+|+|||+.++|+|||+|+|+||+.||++++..+. +-.++|++.+++.+++|||||||||+|.+|
T Consensus 162 ~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~----------------L~~i~y~l~~~~~~i~VATTRPEtmlgdtA 225 (877)
T COG0525 162 KGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGK----------------LYYIKYPLADGDGYLVVATTRPETLLGDTA 225 (877)
T ss_pred CCceeecCCcccCCCccccchhhhhhccceeeee----------------EEEEEEecCCCCceEEEEecCccccccceE
Confidence 9999999999999999999999999998776542 223344555555566666666666666666
Q ss_pred hhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhcccccccCccccccc
Q psy944 445 VAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKH 524 (689)
Q Consensus 445 ~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~ 524 (689)
|+|||+ |.+|+.
T Consensus 226 VaVhP~--------------------------------------------------------------------DeRYk~ 237 (877)
T COG0525 226 VAVHPD--------------------------------------------------------------------DERYKH 237 (877)
T ss_pred EEECCC--------------------------------------------------------------------ChhhHh
Confidence 666665 567899
Q ss_pred ccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCcccccCCC-CCCCCchhhhH
Q psy944 525 LVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYG-EFTGMKRFDAR 603 (689)
Q Consensus 525 l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~~~~~~~-~~~G~~v~~a~ 603 (689)
|+|+.+++|++++.+||+.++||++++|||+|+++|+||++||+++++|+||+++++|++|+++++++ +|+||++++||
T Consensus 238 LvGk~v~lPl~~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR 317 (877)
T COG0525 238 LVGKEVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEAR 317 (877)
T ss_pred hcCCEEecCCCCCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997775 99999999999
Q ss_pred HHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hcC--CCeeecccccchhhh
Q psy944 604 TRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AED--YATKVPENVRTQNSE 666 (689)
Q Consensus 604 ~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~~--~i~~~P~~~~~~~~~ 666 (689)
++|++.|+ +.|++.+.+ +|+|++++|||+++ ..+++.++ +.+ +|+|+|+++++...+
T Consensus 318 ~kIv~~L~----~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~--~~la~~~l~~~~~g~i~f~P~~~~~~~~~ 391 (877)
T COG0525 318 KKIVEDLE----EQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKV--LELAKKALEAVKDGKIKFVPERMEKRYED 391 (877)
T ss_pred HHHHHHHH----hCCCeEeeeeccccCccccCCCceeeeeecceeeEEh--HhhHHHHHHHHhcCCceEecHHHHHHHHH
Confidence 99999999 999998666 78999999999995 66766665 444 999999999999999
Q ss_pred hhhchH
Q psy944 667 KLSEAE 672 (689)
Q Consensus 667 ~~~~~~ 672 (689)
|+++++
T Consensus 392 W~~~i~ 397 (877)
T COG0525 392 WMENIR 397 (877)
T ss_pred HHhhCc
Confidence 999886
No 7
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.9e-83 Score=758.17 Aligned_cols=422 Identities=24% Similarity=0.327 Sum_probs=361.6
Q ss_pred CchHHHHHHhhhcccccccccccccc-CCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccc
Q psy944 205 TDALRFALAAYMSQGERTGRRKSIGE-KNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDH 283 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~ 283 (689)
++++..+|.+|+++|++.++++...+ +.++++|++++|||||||.|||||++|++++|+++||+||+||+|+|++||||
T Consensus 23 ~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~ 102 (961)
T PRK13804 23 RAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDC 102 (961)
T ss_pred CCChHHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCC
Confidence 46888999999999999998776533 45778899999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHH
Q psy944 284 AGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILH 363 (689)
Q Consensus 284 ~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~ 363 (689)
||||||.++++.+.. .|....++++++|++.|++|+.++++.|+++|++||+++||+++|.|+||.|+++++|+|.+|+
T Consensus 103 hGlPiE~~vek~~~~-~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~ 181 (961)
T PRK13804 103 HGLPIEWKIEEKYRA-KGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFA 181 (961)
T ss_pred CCcHHHHHHHHhhhh-cCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHH
Confidence 999999999887632 3556778999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCC------CCceEEEeeccCc
Q psy944 364 EAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDD------GSGEIVVATTRLE 437 (689)
Q Consensus 364 ~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~Tt~P~ 437 (689)
++|+||++.+||+|||.|+|+||++||+|++..+.. .+++| ++.+ ++.+++|||||||
T Consensus 182 ~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~~--------------~~v~F--~~~~~~~~~~~~~~lviwTTtPw 245 (961)
T PRK13804 182 AKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDT--------------IWVKF--PVKDGKGILDSGTYVVIWTTTPW 245 (961)
T ss_pred HCCCEEeCCcceecCCCCCCCccchhcccccccCce--------------EEEEE--EecCcccccCCCCeEEEEeCCch
Confidence 999999999999999999999999999987654432 23332 2221 2468999999999
Q ss_pred cccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhccccc--c
Q psy944 438 TLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVA--V 515 (689)
Q Consensus 438 Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~--~ 515 (689)
|||||+||||||+++|+....++ .. + .+-. ..++.++||+.+.+.+....++. .
T Consensus 246 Tl~an~aiav~p~~~Y~~v~~~~-----~~--------~----------~~~~-~~~e~~iva~~~~~~~~~~~~~~~~~ 301 (961)
T PRK13804 246 TIPANRAISYSPDIEYGLYEVTG-----AE--------N----------DFWA-KPGERLVVADALAESVAKKAGVESFE 301 (961)
T ss_pred hhhhCeEEEECCCCceEEEEecc-----cc--------c----------cccc-cCCcEEEeHHHHHHHHHHHhCCCCcE
Confidence 99999999999999886421100 00 0 0000 01367899999999887654331 1
Q ss_pred cCcccccccccCceeecCcCCC-----ceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCC-CceeeccCCccccc
Q psy944 516 HPEDERYKHLVGKLLVHPFCER-----KIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNL-PLITVFNEEGVIIG 589 (689)
Q Consensus 516 ~~~~~~~~~l~g~~~~~P~~~~-----~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l-~i~~~id~~G~~~~ 589 (689)
...+.+|++|.|++|.||++++ .+||++++||++++|||+||+|||||++||.++++||| |++++||++|+|++
T Consensus 302 ~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~ 381 (961)
T PRK13804 302 RLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTE 381 (961)
T ss_pred EEEEEEhhhccCCEEECCCCCcccccceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEcc
Confidence 1246789999999999999998 89999999999999999999999999999999999999 99999999999998
Q ss_pred CCCC--------CCCCchhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHH-----H
Q psy944 590 DYGE--------FTGMKRFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIA-----K 642 (689)
Q Consensus 590 ~~~~--------~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~-----~ 642 (689)
+.+. |+|+.++||++.|++.|+ ++|++.+.+ +|++++++||||+++.+ +
T Consensus 382 ~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~----~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~ 457 (961)
T PRK13804 382 NAPGFGGARVIDDEGKKYGDANKAVIEKLI----EAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTT 457 (961)
T ss_pred CCCccccccccccCCcchhhhhHHHHHHHH----hCCCcccccceecCCCccCCCCCeEEEeccccccEEcCCcccchHH
Confidence 8777 889999999999999999 999876433 56667899999998431 4
Q ss_pred HHHHHH-hcCCCeeecccccchhhhhhhch
Q psy944 643 LKDQAA-AEDYATKVPENVRTQNSEKLSEA 671 (689)
Q Consensus 643 ~k~~~~-~~~~i~~~P~~~~~~~~~~~~~~ 671 (689)
||++++ ++++|+|+|+++++++.+++++.
T Consensus 458 ~k~~al~~i~~v~~~P~~~~~r~~~~i~~~ 487 (961)
T PRK13804 458 LRSRALDAIDKTRFVPAAGQNRLYNMIEDR 487 (961)
T ss_pred HHHHHHHHHhccEEECHHHHHHHHHHHhcC
Confidence 999997 78999999999999999998853
No 8
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.3e-82 Score=750.50 Aligned_cols=410 Identities=25% Similarity=0.383 Sum_probs=361.2
Q ss_pred CchHHHHHHhhhccccccccccccc-cCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccc
Q psy944 205 TDALRFALAAYMSQGERTGRRKSIG-EKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDH 283 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~~~~~~~-~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~ 283 (689)
++++..+|.+|+++|+++++|+... .+.++++|+|++||||+||.|||||++|++++|+++||+||+|++|+|++||||
T Consensus 18 ~~~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~ 97 (912)
T PRK05743 18 RANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDC 97 (912)
T ss_pred CCChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCC
Confidence 5788999999999999999777542 346778899999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHH
Q psy944 284 AGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILH 363 (689)
Q Consensus 284 ~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~ 363 (689)
||+|||.++++.+ |....++++++|++.|++|+.++++.|+++|++||+++||+++|.|+||.|+++++++|.+|+
T Consensus 98 ~Glpie~~~ek~l----~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~ 173 (912)
T PRK05743 98 HGLPIELKVEKKL----GKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMA 173 (912)
T ss_pred CccHhHHHHHHHc----CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 9999999998865 334567899999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCC-------CCceEEEeeccC
Q psy944 364 EAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDD-------GSGEIVVATTRL 436 (689)
Q Consensus 364 ~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~Tt~P 436 (689)
++|+||++.+||+|||.|+|+||++||+|++..+.. .++. |++.+ .+.+++||||||
T Consensus 174 ~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~--------------~yv~--f~l~~~~~~~~~~~~~l~i~TTrP 237 (912)
T PRK05743 174 KKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPS--------------IYVA--FPVVDGKLAAAFKDASLVIWTTTP 237 (912)
T ss_pred HCCCEEecceeEecCCCcCCCchhhHhhcccccCce--------------EEEE--EEecCcchhcccCCCEEEEEeCCC
Confidence 999999999999999999999999999987654432 2222 22222 236899999999
Q ss_pred ccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhccccc--
Q psy944 437 ETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVA-- 514 (689)
Q Consensus 437 ~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~-- 514 (689)
||||||+||||||+++|+. +++ .++.+++++.+.+.+.....+.
T Consensus 238 ~Tl~~n~aiav~p~~~Y~~--------------------------------~~~--~~~~~i~a~~~~~~~~~~~~~~~~ 283 (912)
T PRK05743 238 WTLPANQAIAVHPEFDYVL--------------------------------VEV--EGEKLIVAKDLVESVLERFGWEDY 283 (912)
T ss_pred hhhhhCeEEEECCCCeeEE--------------------------------EEc--CCCEEEEeHHhHHHHHHhhCCcce
Confidence 9999999999999988753 122 2457899999999886543321
Q ss_pred ccCcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCcccccCCCCC
Q psy944 515 VHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEF 594 (689)
Q Consensus 515 ~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~~~~~~~~~ 594 (689)
....+.+|++|+|++|.||++++.+||++++||++++|||+||+|||||++||.++++||||++++||++|+|++..|+|
T Consensus 284 ~~~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~ 363 (912)
T PRK05743 284 EVLATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLF 363 (912)
T ss_pred EEEEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCccc
Confidence 11246789999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred CCCchhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hcCCCeeeccc
Q psy944 595 TGMKRFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AEDYATKVPEN 659 (689)
Q Consensus 595 ~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~~~i~~~P~~ 659 (689)
+|+.+++|+++|++.|+ ++|++.+.+ ++++++++|||++++.+.+|++++ ++++|+|+|++
T Consensus 364 ~Gl~v~ea~~~Ii~~L~----~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~~~P~~ 439 (912)
T PRK05743 364 AGLFVFKANPKIIEKLE----EKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWIPAW 439 (912)
T ss_pred CCcCHHHhHHHHHHHHH----hCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHcccEEEChH
Confidence 99999999999999999 999876443 566678999999997667999997 67899999999
Q ss_pred ccchhhhhhhchH
Q psy944 660 VRTQNSEKLSEAE 672 (689)
Q Consensus 660 ~~~~~~~~~~~~~ 672 (689)
.++++.+++++..
T Consensus 440 ~~~r~~~~i~~~~ 452 (912)
T PRK05743 440 GKNRIESMVENRP 452 (912)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999987653
No 9
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=3.9e-82 Score=759.69 Aligned_cols=404 Identities=50% Similarity=0.821 Sum_probs=368.6
Q ss_pred cCCCCCCCCCCCCchHHHHHHhhhccccccccccccc---cCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHH
Q psy944 193 KRDYPQGIPECGTDALRFALAAYMSQGERTGRRKSIG---EKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNR 269 (689)
Q Consensus 193 ~k~l~~~l~~~~~~~~~~iE~~~~~~W~~~~~~~~~~---~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~r 269 (689)
++++...+++ .|+++.+|.+|+++|+++++|+... .+.++++|+|++|||||||.|||||+++++++|+++||+|
T Consensus 17 ~~~~~~~~~~--~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~r 94 (995)
T PTZ00419 17 KKRNISSMAA--SYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHR 94 (995)
T ss_pred hhhchhhcCC--CCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3446667888 9999999999999999999887642 2456788999999999999999999999999999999999
Q ss_pred hcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCCh
Q psy944 270 MKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDP 349 (689)
Q Consensus 270 m~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~ 349 (689)
|+|++|+|++||||||+|++.++|+.+....|..+.++++++|+++|++|+.++.+.|+++|++||+++||+++|+|+||
T Consensus 95 m~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~ 174 (995)
T PTZ00419 95 MKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDE 174 (995)
T ss_pred hcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCH
Confidence 99999999999999999999999999877778888999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCCCc-e
Q psy944 350 KLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSG-E 428 (689)
Q Consensus 350 ~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 428 (689)
.|.+.++++|.+|+++||||++.++|+|||.|+|+||++||++++....+.++++++.+.++.+.+..+.|++.+.+. +
T Consensus 175 ~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~ 254 (995)
T PTZ00419 175 QRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEE 254 (995)
T ss_pred HHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeecCCCCcE
Confidence 999999999999999999999999999999999999999999999888877888888766666665556666655444 8
Q ss_pred EEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHh
Q psy944 429 IVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLF 508 (689)
Q Consensus 429 l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~ 508 (689)
++|||||||||+|++||||||++++
T Consensus 255 l~vaTTrPeTl~g~~avav~P~d~~------------------------------------------------------- 279 (995)
T PTZ00419 255 IVVATTRIETMLGDVAVAVHPKDER------------------------------------------------------- 279 (995)
T ss_pred EEEEeCCcchhhhCeEEEECCCCcH-------------------------------------------------------
Confidence 9999999999999999999998531
Q ss_pred hcccccccCcccccccccCceeecCc-CCCceeeeeCC-cccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCcc
Q psy944 509 ADVAVAVHPEDERYKHLVGKLLVHPF-CERKIPILADS-FVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGV 586 (689)
Q Consensus 509 ~~~~~~~~~~~~~~~~l~g~~~~~P~-~~~~~pv~~~~-~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~ 586 (689)
+++|+|++|.||+ +++.+||++++ ||++++|||+||+|||||++||+++++||||+++++|++|+
T Consensus 280 -------------y~~l~G~~~~~Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~ 346 (995)
T PTZ00419 280 -------------YKKLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGK 346 (995)
T ss_pred -------------HHHhcCCEEECCccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCce
Confidence 2467899999999 89999999999 99999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCchhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hc-
Q psy944 587 IIGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AE- 650 (689)
Q Consensus 587 ~~~~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~- 650 (689)
|+++.|+|+|+.+++||++|++.|+ ++|++.+.+ ++++++++|||++| +++++.++ ++
T Consensus 347 ~~~~~~~~~Gl~~~~ar~~ii~~L~----~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~--~~~~~~al~~v~ 420 (995)
T PTZ00419 347 INENGGEFAGMHRFDCRRKIEEELK----EMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNC--KDMAKRAVEAVR 420 (995)
T ss_pred EcCCCcccCCCCHHHHHHHHHHHHH----hcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEec--HHHHHHHHHHhh
Confidence 9999999999999999999999999 999887444 67889999999997 67998886 44
Q ss_pred -CCCeeecccccchhhhhhhchH
Q psy944 651 -DYATKVPENVRTQNSEKLSEAE 672 (689)
Q Consensus 651 -~~i~~~P~~~~~~~~~~~~~~~ 672 (689)
+.++|+|+++++.+.+++++++
T Consensus 421 ~~~i~~~P~~~~~~~~~wl~~l~ 443 (995)
T PTZ00419 421 NGELKIIPSSHENVWYHWLENIQ 443 (995)
T ss_pred cCCeEEEChHHHHHHHHHHhccc
Confidence 4899999999999999998764
No 10
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=3.2e-82 Score=752.72 Aligned_cols=433 Identities=23% Similarity=0.346 Sum_probs=358.3
Q ss_pred hHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccC
Q psy944 207 ALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGI 286 (689)
Q Consensus 207 ~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Gl 286 (689)
++...|.+|+++|+++++|+...+...+++|+|++|||||||.|||||++|++++|+++||+||+|++|+|++||||||+
T Consensus 4 ~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGl 83 (974)
T PLN02843 4 NSVTREPEIQKLWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGL 83 (974)
T ss_pred ChHHhhHHHHHHHHHCCCccccccccCCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCc
Confidence 66789999999999999887654433457799999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcC
Q psy944 287 ATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAG 366 (689)
Q Consensus 287 pie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kG 366 (689)
|||.++++++.. ....++++++|+++|++|+.++.+.|+++|++||++.||+++|.|+||.|+++++++|.+|+++|
T Consensus 84 pie~~vek~l~~---~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~G 160 (974)
T PLN02843 84 PIELKVLQSLDQ---EARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNG 160 (974)
T ss_pred HHHHHHHHHhch---hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCC
Confidence 999999887632 24567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeecccccccCCCCcccCCCceeeee-ecCCccccccCCCCCCcccceeccccccC---------C--CCceEEEeec
Q psy944 367 DIYRSERLVHWSCSLKSAISDIEVDKVE-LTGRTPLRVPGYANPVDFGVLASFAYKLD---------D--GSGEIVVATT 434 (689)
Q Consensus 367 liy~~~~~v~w~~~~~t~ls~~ev~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~~~~l~~~Tt 434 (689)
+||++.+||+|||+|+|+||++||+|++ ..+.. .++.|.+... + .+.+++||||
T Consensus 161 lIyr~~kpV~Wcp~~~Talae~Evey~e~~~~~s--------------~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTT 226 (974)
T PLN02843 161 YIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKS--------------IYVAFPVVSPSETSPEELEEFLPGLSLAIWTT 226 (974)
T ss_pred CEEecceeeeecCCCCCcchHhHhcccCCccCce--------------EEEEEEecCCccccccccccccccceEEEEeC
Confidence 9999999999999999999999999875 22222 2222222110 0 1258999999
Q ss_pred cCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhccccc
Q psy944 435 RLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVA 514 (689)
Q Consensus 435 ~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~ 514 (689)
||||||||+||||||+.+|+....++...+-+ ..+.+...-+|.. +.+ + +++.++|++.+.+.+....+..
T Consensus 227 tPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r----~~~~~~~~~~~~~--~~~--~-~~~~~iva~~l~~~~~~~~~~~ 297 (974)
T PLN02843 227 TPWTMPANAAVAVNDKLQYSVVEVQSFSEDES----TSGGNKKKRPGNV--LKE--Q-QKLFLIVATDLVPALEAKWGVK 297 (974)
T ss_pred cchhhccCcEEEECCCCceEEEEecccccccc----ccccccccccccc--ccc--c-cCceEEeHHHHHHHHHHhhCCc
Confidence 99999999999999999987643321000000 0000000001100 000 0 2467999999998876543321
Q ss_pred c-cCcccccccccCceeecCcCCCceeee-eCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCcccccCCC
Q psy944 515 V-HPEDERYKHLVGKLLVHPFCERKIPIL-ADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYG 592 (689)
Q Consensus 515 ~-~~~~~~~~~l~g~~~~~P~~~~~~pv~-~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~~~~~~~ 592 (689)
. ...+++|++|.|++|.||+.++.+||+ +++||++++|||+||+|||||++||+++++||||++++||++|+|+++.|
T Consensus 298 ~~~~~~~~g~~L~g~~~~~P~~~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~ 377 (974)
T PLN02843 298 LVVLKTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAG 377 (974)
T ss_pred eEEEeeechHHcCCCEEECCCCCCceeEEecCCccCCCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCc
Confidence 1 125678999999999999999999997 48999999999999999999999999999999999999999999999889
Q ss_pred CCCCCchh-hhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hcCCCeee
Q psy944 593 EFTGMKRF-DARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AEDYATKV 656 (689)
Q Consensus 593 ~~~G~~v~-~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~~~i~~~ 656 (689)
+|+|+.++ +|+++|++.|+ ++|++.+.+ ++++++++||||++ ++||++++ ++++|+|+
T Consensus 378 ~~~G~~v~~~a~~~Ii~~L~----~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~--~~~k~~al~~~~~v~~~ 451 (974)
T PLN02843 378 QFSGLSVLGEGNAAVVEALD----EAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASV--EGFRQAALDAIDKVKWI 451 (974)
T ss_pred ccCCcEehhcchHHHHHHHH----HCCCeeeeeeecCCCCccCCCCCeEEEEecCceeEeC--HHHHHHHHHHHhccEEE
Confidence 99999998 89999999999 999876544 56677899999996 78999987 67999999
Q ss_pred cccccchhhhhhhch
Q psy944 657 PENVRTQNSEKLSEA 671 (689)
Q Consensus 657 P~~~~~~~~~~~~~~ 671 (689)
|+..++++.+++++.
T Consensus 452 P~~~~~r~~~~i~~~ 466 (974)
T PLN02843 452 PAQGENRIRAMVSGR 466 (974)
T ss_pred ChHHHHHHHHHHhcC
Confidence 999999999988764
No 11
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=2.2e-81 Score=748.93 Aligned_cols=405 Identities=51% Similarity=0.867 Sum_probs=350.5
Q ss_pred cccCCCCCCCCCCCCchHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHh
Q psy944 191 GQKRDYPQGIPECGTDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRM 270 (689)
Q Consensus 191 ~~~k~l~~~l~~~~~~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm 270 (689)
+.++++...|++ .|+|+.+|.+|+++|+++++|+.. .+.++++|+|++||||+||.|||||+++++++|+++||+||
T Consensus 87 ~~~~~~~~~~~~--~yd~~~iE~~w~~~W~~~~~f~~~-~~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm 163 (1066)
T PLN02381 87 GQKKRLSSQMAK--QYSPSAVEKSWYAWWEKSGYFGAD-AKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRM 163 (1066)
T ss_pred chhhccchhccc--CCCHHHHHHHHHHHHHHCCCccCC-ccCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 444444456888 999999999999999999988764 34567889999999999999999999999999999999999
Q ss_pred cCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChh
Q psy944 271 KGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPK 350 (689)
Q Consensus 271 ~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~ 350 (689)
+||+|+|++||||||+|++.++++++....|..+.++++++|+++|++|+.++.+.|+++|++||+++||++.|+|+||.
T Consensus 164 ~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~ 243 (1066)
T PLN02381 164 SGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQ 243 (1066)
T ss_pred CCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHH
Confidence 99999999999999999999999988777788889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCCCceEE
Q psy944 351 LSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIV 430 (689)
Q Consensus 351 ~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (689)
|+++++|+|.+|+++||||++.++|+|||.|+|+||++||++++..+++.+.++++...+.++.+..|.
T Consensus 244 ~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~----------- 312 (1066)
T PLN02381 244 RSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFA----------- 312 (1066)
T ss_pred HHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEE-----------
Confidence 999999999999999999999999999999999999999999887766655555554443333332232
Q ss_pred EeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhc
Q psy944 431 VATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFAD 510 (689)
Q Consensus 431 ~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~ 510 (689)
|.+.++++.++|||+|+|+++|+
T Consensus 313 ---------------------------------------------------------Y~l~~~~~~i~vATtRpEti~g~ 335 (1066)
T PLN02381 313 ---------------------------------------------------------YPLEGGLGEIVVATTRIETMLGD 335 (1066)
T ss_pred ---------------------------------------------------------EEecCCCCEEEEecCCHHHHhcc
Confidence 33322223455555555555555
Q ss_pred ccccccCcccccccccCceeecCcCCCceeeeeCC-cccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCccccc
Q psy944 511 VAVAVHPEDERYKHLVGKLLVHPFCERKIPILADS-FVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIG 589 (689)
Q Consensus 511 ~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~-~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~~~~ 589 (689)
++++++|++.++++|+|++|.||++++.+|||.++ ||++++|||+||+|||||++||+++++||||+++++|++|+|++
T Consensus 336 ~avaV~P~d~ry~~L~G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~ 415 (1066)
T PLN02381 336 TAIAIHPDDERYKHLHGKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINS 415 (1066)
T ss_pred cceeeCCCCcchhhhCCCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCC
Confidence 55555555566788999999999999999999864 99999999999999999999999999999999999999999998
Q ss_pred CCC-CCCCCchhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hc---
Q psy944 590 DYG-EFTGMKRFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AE--- 650 (689)
Q Consensus 590 ~~~-~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~--- 650 (689)
+++ .|+|+.+++||++|++.|+ +.|++.+.+ +|++++++||||++ +.++++++ ++
T Consensus 416 ~~~~~~~Gl~~~eAr~~Ii~~L~----~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~--~~l~~~al~av~~~ 489 (1066)
T PLN02381 416 NGGSEFAGMPRFAAREAVIEALQ----KKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNC--SSMAKQALDAAIDG 489 (1066)
T ss_pred CCccccCCCCHHHHHHHHHHHHH----hCCCEecceeeecCCCeeCCCCceEEEeecccceEEc--hHHHHHHHHHHhhc
Confidence 765 7999999999999999999 999887433 78999999999997 67888776 44
Q ss_pred --CCCeeecccccchhhhhhhchH
Q psy944 651 --DYATKVPENVRTQNSEKLSEAE 672 (689)
Q Consensus 651 --~~i~~~P~~~~~~~~~~~~~~~ 672 (689)
++|+|+|+++++.+.+|++++.
T Consensus 490 ~~~~i~~~P~~~~~~~~~wl~n~~ 513 (1066)
T PLN02381 490 ENKKLEFIPKQYLAEWKRWLENIR 513 (1066)
T ss_pred cCCceEEEChHHHHHHHHHHhcCc
Confidence 7999999999999999998875
No 12
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=4.9e-81 Score=743.83 Aligned_cols=417 Identities=25% Similarity=0.347 Sum_probs=357.4
Q ss_pred CchHHHHHHhhhcccccccccccccc-CCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccc
Q psy944 205 TDALRFALAAYMSQGERTGRRKSIGE-KNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDH 283 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~ 283 (689)
+|++..+|++|+++|+++++|+...+ +.++++|++++|||||||.|||||++|++++|+++||+||+||+|+|++||||
T Consensus 5 ~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~ 84 (861)
T TIGR00392 5 RGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDT 84 (861)
T ss_pred CCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCC
Confidence 68999999999999999997775433 45678899999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHH
Q psy944 284 AGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILH 363 (689)
Q Consensus 284 ~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~ 363 (689)
||+|||.++++.++..........++++|+++|++|+.++++.|+++|++||+++||+++|.|+||.|+++++|+|.+|+
T Consensus 85 ~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~ 164 (861)
T TIGR00392 85 HGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAH 164 (861)
T ss_pred CccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHH
Confidence 99999999998765432334445677899999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCCCc--------eEEEeecc
Q psy944 364 EAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSG--------EIVVATTR 435 (689)
Q Consensus 364 ~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~Tt~ 435 (689)
++|+||++.++|+|||.|+|+||++||++.+ +|++..+.+.++.| ++.+.+. +++|||||
T Consensus 165 ~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~----------~~~~~~~~~~~v~f--~~~~~~~~~~~~~~~~l~i~TTr 232 (861)
T TIGR00392 165 EKGLLYRGLKPVYWSPRCRTALAEAEVEYKE----------NYKDVKDPSIYVKF--PVKKDKKTYLKVKLSSLLIWTTT 232 (861)
T ss_pred HCCCEeecceeeecCCCcCCcccHHHHhccc----------ccccccCceEEEEE--EecCCcccccccccceEEEEECC
Confidence 9999999999999999999999999998753 12222333444433 3322222 89999999
Q ss_pred CccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhcccc-c
Q psy944 436 LETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAV-A 514 (689)
Q Consensus 436 P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~-~ 514 (689)
|||||||+||||||+++|+.. ...+.++.+++++.+.+.+.+..+. .
T Consensus 233 P~Tl~~~~ai~v~p~~~Y~~~--------------------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~ 280 (861)
T TIGR00392 233 PWTLPSNLAIAVHPDFEYALV--------------------------------QDNTKVEYFILAKKLVEKLYNKAGSDY 280 (861)
T ss_pred cccccCCeeeeeCCCCceEEE--------------------------------EcCCCCcEEEEeHHHHHHHHHhcCCce
Confidence 999999999999999987532 1122246899999999998765433 1
Q ss_pred ccCcccccccccCceeecCcCCCce------eee-eCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCccc
Q psy944 515 VHPEDERYKHLVGKLLVHPFCERKI------PIL-ADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVI 587 (689)
Q Consensus 515 ~~~~~~~~~~l~g~~~~~P~~~~~~------pv~-~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~~ 587 (689)
....+.+|.+|+|++|.||++++.+ ||+ +++||++++|||+||+|||||++||+++++||||+++++|++|+|
T Consensus 281 ~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~ 360 (861)
T TIGR00392 281 EIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVY 360 (861)
T ss_pred EEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCCCceE
Confidence 1235678999999999999999888 864 559999999999999999999999999999999999999999998
Q ss_pred ccCCC-------CCCCCchhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHH
Q psy944 588 IGDYG-------EFTGMKRFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQ 646 (689)
Q Consensus 588 ~~~~~-------~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~ 646 (689)
+...+ .|.|+.+.+|+++|++.|+ ++|++.+.+ ++++++++||||++ +++|+.
T Consensus 361 ~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~----~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~--~~~k~~ 434 (861)
T TIGR00392 361 TEGVNDFQGRFVKDADKDIIKANKIIIEQLK----DKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKT--KDIKDQ 434 (861)
T ss_pred CCcCccccccccccCCccHHHhHHHHHHHHH----hCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEc--HHHHHH
Confidence 76544 4889999999999999999 999876444 45666899999997 789999
Q ss_pred HH-hcCCCeeecccccchhhhhhhch
Q psy944 647 AA-AEDYATKVPENVRTQNSEKLSEA 671 (689)
Q Consensus 647 ~~-~~~~i~~~P~~~~~~~~~~~~~~ 671 (689)
++ ++++|+|+|+++++++.++++++
T Consensus 435 ~l~~~~~i~~~P~~~~~~~~~~l~~l 460 (861)
T TIGR00392 435 MLEQIKKVNWVPEWGEGRFGNWLENR 460 (861)
T ss_pred HHHHhCCcEEECchHHHHHHHHHhCC
Confidence 97 67899999999999999888865
No 13
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.2e-80 Score=736.82 Aligned_cols=379 Identities=47% Similarity=0.782 Sum_probs=345.4
Q ss_pred CCCCCCCchHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeC
Q psy944 199 GIPECGTDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWN 278 (689)
Q Consensus 199 ~l~~~~~~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~ 278 (689)
.+++ .|+|+.+|++|+++|+++++|+... +.+++|+|++||||+||.|||||++|++++|+++||+||+|++|+|+
T Consensus 4 ~~~~--~y~~~~~E~~~~~~W~~~~~f~~~~--~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~ 79 (874)
T PRK05729 4 ELPK--TYDPKEVEAKWYQKWEEKGYFKPDD--NSKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWL 79 (874)
T ss_pred cCCC--CCCHHHHHHHHHHHHHHCCCcccCc--CCCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 3666 8999999999999999999888742 24556999999999999999999999999999999999999999999
Q ss_pred CCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHH
Q psy944 279 PGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEA 358 (689)
Q Consensus 279 ~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~ 358 (689)
+||||||+|+|.++++.+... |..+.++++++|+++|++|++++.+.|+++|++||+++||+|+|+|+|+.|+++|+++
T Consensus 80 ~G~D~~Gi~~e~~ve~~l~~~-g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~ 158 (874)
T PRK05729 80 PGTDHAGIATQMVVERQLAAE-GKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREV 158 (874)
T ss_pred CCCCccchhhHHHHHHHHHhc-CCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHH
Confidence 999999999999999877544 8888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCCCceEEEeeccCcc
Q psy944 359 FVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRLET 438 (689)
Q Consensus 359 f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Tt~P~T 438 (689)
|.+|+++|+||++.++|+|||.|+|+||++||++++..+. +..+.|++.+.+.+++||||||||
T Consensus 159 F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~~~----------------~~~i~f~~~~~~~~l~vaTtrPeT 222 (874)
T PRK05729 159 FVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKGK----------------LWHIRYPLADGSDYLVVATTRPET 222 (874)
T ss_pred HHHHHHCCCEeecCcccccCCCCCCcchhhhcccccccce----------------EEEEEEEecCCCcEEEEEeCCcch
Confidence 9999999999999999999999999999999988765432 122345555666799999999999
Q ss_pred ccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhcccccccCc
Q psy944 439 LFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPE 518 (689)
Q Consensus 439 l~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~ 518 (689)
|+|++||||||+++
T Consensus 223 l~~~~avaV~P~d~------------------------------------------------------------------ 236 (874)
T PRK05729 223 MLGDTAVAVNPEDE------------------------------------------------------------------ 236 (874)
T ss_pred hhcCeeEeECCCcc------------------------------------------------------------------
Confidence 99999999999842
Q ss_pred ccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCcccccCCCCCCCCc
Q psy944 519 DERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMK 598 (689)
Q Consensus 519 ~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~~~~~~~~~~G~~ 598 (689)
++++|+|+++.||++++.+||++++||++++|||+||++||||++||+++++||||+++++|++|+|++++|+|+|+.
T Consensus 237 --ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~ 314 (874)
T PRK05729 237 --RYKHLIGKTVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLD 314 (874)
T ss_pred --HHHHhcCCEEECCCCCCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCC
Confidence 135788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hc--CCCeeeccccc
Q psy944 599 RFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AE--DYATKVPENVR 661 (689)
Q Consensus 599 v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~--~~i~~~P~~~~ 661 (689)
+++||++|++.|+ ++|++.+.+ ++++++++|||+++ +++++.++ ++ +.++|+|++++
T Consensus 315 ~~~ar~~i~~~L~----~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~--~~~~~~~~~~v~~~~i~~~P~~~~ 388 (874)
T PRK05729 315 RFEARKAIVADLE----ELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKM--KPLAKPALEAVENGEIKFVPERWE 388 (874)
T ss_pred HHHHHHHHHHHHH----hCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEeh--HHHHHHHHHHHhcCCcEEEChHHH
Confidence 9999999999999 999886544 67889999999997 68888886 33 57999999999
Q ss_pred chhhhhhhchH
Q psy944 662 TQNSEKLSEAE 672 (689)
Q Consensus 662 ~~~~~~~~~~~ 672 (689)
+.+.+++++++
T Consensus 389 ~~~~~wl~~l~ 399 (874)
T PRK05729 389 KTYFHWMENIQ 399 (874)
T ss_pred HHHHHHHhcCc
Confidence 99999998654
No 14
>KOG0432|consensus
Probab=100.00 E-value=4e-80 Score=680.11 Aligned_cols=411 Identities=53% Similarity=0.858 Sum_probs=382.7
Q ss_pred HhhhccccCCCCCCCCCCCCchHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHH
Q psy944 186 QRAADGQKRDYPQGIPECGTDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSIT 265 (689)
Q Consensus 186 ~~a~~~~~k~l~~~l~~~~~~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~la 265 (689)
.+++.+.++++...++. .|+|+.+|..|+.+|++.++++........+.|.+..||||+||.||+|||++.++.|+++
T Consensus 28 ~~t~~ge~k~~~~~~~~--~y~p~~vE~~wy~ww~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~ 105 (995)
T KOG0432|consen 28 PSTAPGEKKDLSGPLPA--AYSPAYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALA 105 (995)
T ss_pred CCCCcchhhccCCcccc--cCCccchHHHHHHHHHHcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHHHHHHH
Confidence 45566777888889999 9999999999999999999998865556678999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccc
Q psy944 266 RWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACF 345 (689)
Q Consensus 266 Ry~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~ 345 (689)
||+||.||+|+|.+|+||+|++++..+|+.+.++.+..+.++++++|++++++|.+++...|++||++||.++||+|.++
T Consensus 106 R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~f 185 (995)
T KOG0432|consen 106 RYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAF 185 (995)
T ss_pred HHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCC
Q psy944 346 TMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDG 425 (689)
Q Consensus 346 T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (689)
|||+..+++|.++|.+|++.|+|||+.+.|+|||..+|++||.||+++++.++++++++||..+++++++-+|.|++.++
T Consensus 186 TmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs 265 (995)
T KOG0432|consen 186 TMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGS 265 (995)
T ss_pred ccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888887
Q ss_pred CceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHH
Q psy944 426 SGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLE 505 (689)
Q Consensus 426 ~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e 505 (689)
+..++++|||||||+|++||||||+++
T Consensus 266 ~~~i~VaTTRpET~lGDvAvAVhP~D~----------------------------------------------------- 292 (995)
T KOG0432|consen 266 DEEIVVATTRPETILGDVAVAVHPDDD----------------------------------------------------- 292 (995)
T ss_pred CCeEEEecCCccccccceeEEeCCCCc-----------------------------------------------------
Confidence 778888888888888888888888743
Q ss_pred HHhhcccccccCcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCc
Q psy944 506 TLFADVAVAVHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEG 585 (689)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G 585 (689)
+|+.|.|+.+.||++++.+|||.+++|++++|||+|+++|||++.||+++++|||+.+++++++|
T Consensus 293 ---------------RYk~lhGk~~~hP~~~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG 357 (995)
T KOG0432|consen 293 ---------------RYKHLHGKFVKHPFTGRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDG 357 (995)
T ss_pred ---------------ccccccCceeecCCCCCccceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCC
Confidence 34566788999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCchhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hc
Q psy944 586 VIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AE 650 (689)
Q Consensus 586 ~~~~~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~ 650 (689)
.+++.+|+|+||++++||++|++.|+ +.|++++.+ +|+|++++|||+++ +.+.++++ +.
T Consensus 358 ~l~~~~gef~Gm~RFeAR~kvv~~L~----e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c--~ema~~A~~av 431 (995)
T KOG0432|consen 358 LLNNVCGEFKGMKRFEAREKVVEKLK----ELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSC--KEMAKKALKAV 431 (995)
T ss_pred ceeccchhccCcHHHHHHHHHHHHHH----HhhhhhccCCCceeccccCCCCCcccccccchheeeh--HHHHHHHHHHH
Confidence 99999999999999999999999999 999998655 79999999999996 67766665 44
Q ss_pred --CCCeeecccccchhhhhhhchH
Q psy944 651 --DYATKVPENVRTQNSEKLSEAE 672 (689)
Q Consensus 651 --~~i~~~P~~~~~~~~~~~~~~~ 672 (689)
..++.+|+..++.+..|+++..
T Consensus 432 ~sG~L~i~P~~~~k~w~~W~~~i~ 455 (995)
T KOG0432|consen 432 ESGKLEILPEFHEKEWYRWLENIR 455 (995)
T ss_pred hcCCeEECchHHHHHHHHHHhhcc
Confidence 4899999999999988877643
No 15
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=2.6e-79 Score=728.22 Aligned_cols=379 Identities=48% Similarity=0.789 Sum_probs=343.1
Q ss_pred CCCCCCchHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCC
Q psy944 200 IPECGTDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNP 279 (689)
Q Consensus 200 l~~~~~~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~ 279 (689)
||+ .|+|+.+|++|+++|+++++|+... +.++++|+|++||||+||.|||||+++++++|+++||+||+|++|+|++
T Consensus 1 ~~~--~y~~~~iE~~~~~~W~~~~~f~~~~-~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~ 77 (861)
T TIGR00422 1 MPK--DYDPHEVEKKWYKKWEKSGFFKPDG-NSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLP 77 (861)
T ss_pred CCC--CCCHHHHHHHHHHHHHHCCCcccCc-ccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCC
Confidence 355 8999999999999999999887752 3467889999999999999999999999999999999999999999999
Q ss_pred CcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHH
Q psy944 280 GCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAF 359 (689)
Q Consensus 280 G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f 359 (689)
||||||+|+|..+++.++. .|..+.++++++|+++|++|++++.+.++++|++||+++||+++|+|+|+.|.++|+|+|
T Consensus 78 G~D~~Glp~e~~vek~~~~-~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F 156 (861)
T TIGR00422 78 GTDHAGIATQVKVEKKLGA-EGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAF 156 (861)
T ss_pred CcCcCCCcHHHHHHHHhcc-cCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHH
Confidence 9999999999999987754 467788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCCC-ceEEEeeccCcc
Q psy944 360 VILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGS-GEIVVATTRLET 438 (689)
Q Consensus 360 ~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Tt~P~T 438 (689)
.+|+++|+||++.++|+|||+|+|+||++||++++..+.. .. +.|++.+.+ .+++||||||||
T Consensus 157 ~~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~~~~--------------~~--i~f~~~~~~~~~l~vaTtrPeT 220 (861)
T TIGR00422 157 VRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEVKGKL--------------YY--IRYPLANGSKDYLVVATTRPET 220 (861)
T ss_pred HHHHHCCCeeecCcccccCCCCCCcchHhHhhcccccceE--------------EE--EEEEecCCCCCEEEEEeCCcch
Confidence 9999999999999999999999999999999876654332 22 234444433 699999999999
Q ss_pred ccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhcccccccCc
Q psy944 439 LFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPE 518 (689)
Q Consensus 439 l~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~ 518 (689)
|+|++||||||++++
T Consensus 221 l~~~~av~V~P~~~r----------------------------------------------------------------- 235 (861)
T TIGR00422 221 MFGDTAVAVHPEDER----------------------------------------------------------------- 235 (861)
T ss_pred hhhCeEEEECCCchH-----------------------------------------------------------------
Confidence 999999999998531
Q ss_pred ccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCcccccCCCCCCCCc
Q psy944 519 DERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMK 598 (689)
Q Consensus 519 ~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~~~~~~~~~~G~~ 598 (689)
+++|+|+++.+|++++.+||++++||++++|||+||+|||||++||+++++||||+++++|++|++++++|.|+|++
T Consensus 236 ---y~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~ 312 (861)
T TIGR00422 236 ---YKHLIGKKVILPLTGRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLT 312 (861)
T ss_pred ---HHHhcCCEEEcCCCCCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcC
Confidence 24688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hc--CCCeeeccccc
Q psy944 599 RFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AE--DYATKVPENVR 661 (689)
Q Consensus 599 v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~--~~i~~~P~~~~ 661 (689)
++|||++|++.|+ ++|++...+ ++++++++|||+++ ++++++++ .+ ++++|+|++++
T Consensus 313 ~~~ar~~i~~~L~----~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~--~~~~~~~~~~~~~~~i~~~P~~~~ 386 (861)
T TIGR00422 313 RFEARKKIVEDLK----EEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKV--EKLADKALEAAEEGEIKFVPKRME 386 (861)
T ss_pred HHHhHHHHHHHHH----hCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEec--HHHHHHHHHHhhcCCeEEEChHHH
Confidence 9999999999999 999887543 57788999999997 78998887 33 37999999999
Q ss_pred chhhhhhhchH
Q psy944 662 TQNSEKLSEAE 672 (689)
Q Consensus 662 ~~~~~~~~~~~ 672 (689)
+.+.+++++++
T Consensus 387 ~~~~~wl~~l~ 397 (861)
T TIGR00422 387 KRYLNWLRNIK 397 (861)
T ss_pred HHHHHHHhccc
Confidence 99999988754
No 16
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.1e-79 Score=729.38 Aligned_cols=385 Identities=46% Similarity=0.744 Sum_probs=345.8
Q ss_pred CCCCCCCCCchHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEe
Q psy944 197 PQGIPECGTDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTL 276 (689)
Q Consensus 197 ~~~l~~~~~~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~ 276 (689)
...+++ .|+|+.+|.+|+++|++.++|+....+.++++|+|++||||+||.|||||+++++++|+++||+||+||+|+
T Consensus 12 ~~~~~~--~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl 89 (1052)
T PRK14900 12 RTELAK--GYEHREVEARWYPFWQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTL 89 (1052)
T ss_pred ccccCC--CCCHHHHHHHHHHHHHHCCCccCCcccCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCccc
Confidence 345777 899999999999999999988764234567889999999999999999999999999999999999999999
Q ss_pred eCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHH
Q psy944 277 WNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVT 356 (689)
Q Consensus 277 ~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~ 356 (689)
|++||||||+|+|.++++.++...+..+.++++++|++.|++|++++.+.|+++|++||+++||+++|+|+||.|+++++
T Consensus 90 ~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~ 169 (1052)
T PRK14900 90 WLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVR 169 (1052)
T ss_pred CCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHH
Confidence 99999999999999999888766788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCCCceEEEeeccC
Q psy944 357 EAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRL 436 (689)
Q Consensus 357 ~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Tt~P 436 (689)
|+|.+|+++||||++.++|+|||.|+|+||++||++++.... .+..+.|++.+.+.+++||||||
T Consensus 170 ~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~~---------------~~~~i~f~l~~~~~~l~vaTTrP 234 (1052)
T PRK14900 170 EVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQG---------------ELWSFAYPLADGSGEIVVATTRP 234 (1052)
T ss_pred HHHHHHHHCCCEEeccceeccCCCCCCCccHHHhcccCCCCC---------------eEEEEEEEecCCCcEEEEEECch
Confidence 999999999999999999999999999999999987642211 11123455555556899999999
Q ss_pred ccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhccccccc
Q psy944 437 ETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVH 516 (689)
Q Consensus 437 ~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~~ 516 (689)
||||||+||||||++++
T Consensus 235 eTl~~~~avaV~P~~~~--------------------------------------------------------------- 251 (1052)
T PRK14900 235 ETMLGDTAVAVHPLDPR--------------------------------------------------------------- 251 (1052)
T ss_pred hhhhcceeEEECCCcHH---------------------------------------------------------------
Confidence 99999999999998531
Q ss_pred CcccccccccCceeecCcCCCceeeeeC-CcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCcccccCCCCCC
Q psy944 517 PEDERYKHLVGKLLVHPFCERKIPILAD-SFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFT 595 (689)
Q Consensus 517 ~~~~~~~~l~g~~~~~P~~~~~~pv~~~-~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~~~~~~~~~~ 595 (689)
+++|+|++|.||++++.+||+.+ .||++++|||+||++||||++||+++++||||++++||++|+|+++.|+|+
T Consensus 252 -----y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~ 326 (1052)
T PRK14900 252 -----YMALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLA 326 (1052)
T ss_pred -----HHHhcCCEEECCCCCCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccC
Confidence 24688999999999999999965 489999999999999999999999999999999999999999998889999
Q ss_pred CCchhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hc--CCCeeecc
Q psy944 596 GMKRFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AE--DYATKVPE 658 (689)
Q Consensus 596 G~~v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~--~~i~~~P~ 658 (689)
|+.+++||++|++.|+ ++|++.+.+ +|++++++|||+++ +++++.++ .+ +.++|+|+
T Consensus 327 Gl~~~ear~~Ii~~L~----~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l--~~~k~~~~~~v~~~~~~~~P~ 400 (1052)
T PRK14900 327 GLDRFEARKEVKRLLA----EQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRI--EPLARPAIEAVEQGRTRFIPE 400 (1052)
T ss_pred CcCHHHHHHHHHHHHH----hCCCeecceeeeccCceeCCCCceEEEEeccceeeeh--HHHHHHHHHHHhcCCcEEECh
Confidence 9999999999999999 999987643 78899999999996 67998886 44 46999999
Q ss_pred cccchhhhhhhchH
Q psy944 659 NVRTQNSEKLSEAE 672 (689)
Q Consensus 659 ~~~~~~~~~~~~~~ 672 (689)
++++.+.+++++++
T Consensus 401 ~~~~~~~~wl~~l~ 414 (1052)
T PRK14900 401 QWTNTYMAWMRNIH 414 (1052)
T ss_pred HHHHHHHHHHhcCc
Confidence 99999999988654
No 17
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.7e-79 Score=724.96 Aligned_cols=375 Identities=43% Similarity=0.718 Sum_probs=335.9
Q ss_pred CCCCCCCchHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeC
Q psy944 199 GIPECGTDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWN 278 (689)
Q Consensus 199 ~l~~~~~~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~ 278 (689)
.|++ .|+++. |++|+++|+++++|+... +.++++|+|++||||+||.|||||+++++++|+++||+||+||+|+|+
T Consensus 56 ~~~~--~y~~~~-E~~~~~~W~~~~~f~~~~-~~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~ 131 (958)
T PLN02943 56 ETAK--SFDFTS-EERIYNWWESQGYFKPNF-DRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWI 131 (958)
T ss_pred ccCC--CCChhh-hHHHHHHHHHCCCcccCc-ccCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecC
Confidence 4677 999998 999999999999888753 345678999999999999999999999999999999999999999999
Q ss_pred CCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHH
Q psy944 279 PGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEA 358 (689)
Q Consensus 279 ~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~ 358 (689)
+||||||+|+|..+++.+. ..|..+.++++++|++.|++|++++.+.|+++|++||+++||++.|+|+||.|+++++++
T Consensus 132 ~G~D~~Gl~~e~~vek~l~-~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~ 210 (958)
T PLN02943 132 PGTDHAGIATQLVVEKMLA-SEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEA 210 (958)
T ss_pred CCCCcccchhHHHHHHHHH-HcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHH
Confidence 9999999999999998874 457788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCCC-ceEEEeeccCc
Q psy944 359 FVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGS-GEIVVATTRLE 437 (689)
Q Consensus 359 f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Tt~P~ 437 (689)
|.+|+++||||++.++|+|||.|+|+||++||++++..+. ..+ +.|++.+++ .+++|||||||
T Consensus 211 F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~~~--------------~~~--i~f~l~~~~~~~l~vaTTrPe 274 (958)
T PLN02943 211 FVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGT--------------LYY--IKYRVAGGSEDFLTIATTRPE 274 (958)
T ss_pred HHHHHHCCCEEecCceeccCCCCCCCcCHHHhhccccccc--------------EEE--EEEEEcCCCCCEEEEEeCChh
Confidence 9999999999999999999999999999999998765432 122 334554433 58999999999
Q ss_pred cccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhcccccccC
Q psy944 438 TLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHP 517 (689)
Q Consensus 438 Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~~~ 517 (689)
||||++||||||+++.
T Consensus 275 Tl~~~~avavnP~d~r---------------------------------------------------------------- 290 (958)
T PLN02943 275 TLFGDVAIAVNPEDDR---------------------------------------------------------------- 290 (958)
T ss_pred hhhcceEEEECCCCHH----------------------------------------------------------------
Confidence 9999999999999652
Q ss_pred cccccccccCceeecCcC-CCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCcccccCCCCCCC
Q psy944 518 EDERYKHLVGKLLVHPFC-ERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTG 596 (689)
Q Consensus 518 ~~~~~~~l~g~~~~~P~~-~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~~~~~~~~~~G 596 (689)
|+.|+|++++||++ ++.+||++++||++++|||+||++||||++||+++++||||+++++|++|+|++. .|
T Consensus 291 ----y~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~----~g 362 (958)
T PLN02943 291 ----YSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV----AG 362 (958)
T ss_pred ----HHHHcCCEEECCCcCCCeeeEEecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCceeecc----CC
Confidence 22356889999997 9999999999999999999999999999999999999999999999999999965 45
Q ss_pred CchhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hc--CCCeeeccc
Q psy944 597 MKRFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AE--DYATKVPEN 659 (689)
Q Consensus 597 ~~v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~--~~i~~~P~~ 659 (689)
+.+++||++|++.|+ ++|++.+.+ +|++++++|||+++ ++++++++ .+ +.|+|+|++
T Consensus 363 ~~~~ear~~iv~~L~----~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~--~~l~~~~l~~v~~~~i~~~P~~ 436 (958)
T PLN02943 363 LYWFEAREKLWSDLE----ETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTM--EPLAEKALKAVENGELTIIPER 436 (958)
T ss_pred ccHHHHHHHHHHHHH----HCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEH--HHHHHHHHHHHhcCCcEEEChH
Confidence 669999999999999 999887543 78999999999996 67998876 33 479999999
Q ss_pred ccchhhhhhhchH
Q psy944 660 VRTQNSEKLSEAE 672 (689)
Q Consensus 660 ~~~~~~~~~~~~~ 672 (689)
+++.+.++++++.
T Consensus 437 ~~~~~~~wl~~l~ 449 (958)
T PLN02943 437 FEKIYNHWLSNIK 449 (958)
T ss_pred HHHHHHHHHhcCc
Confidence 9999988887654
No 18
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=5e-78 Score=722.21 Aligned_cols=429 Identities=19% Similarity=0.224 Sum_probs=341.2
Q ss_pred CCCCCCCchHHHHHHhhhccccccccccccccCC---CCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeE
Q psy944 199 GIPECGTDALRFALAAYMSQGERTGRRKSIGEKN---PKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTT 275 (689)
Q Consensus 199 ~l~~~~~~~~~~iE~~~~~~W~~~~~~~~~~~~~---~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V 275 (689)
+.++ ++++..+|++||++|+++++|+...+.. ++++|++++||||+||.||+||++|++++|+++||+||+||+|
T Consensus 8 ~~~~--r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~v 85 (1084)
T PLN02959 8 STAR--RDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANV 85 (1084)
T ss_pred CCch--hcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCcc
Confidence 3445 7899999999999999999888764322 3478999999999999999999999999999999999999999
Q ss_pred eeCCCcccccChHHHHHHHHHH--HHhccc----------------------ccccCHHHHHHHHHHHHHH---------
Q psy944 276 LWNPGCDHAGIATQVVVEKKLW--REEKKT----------------------RHEIGREKFIEKVWEWKKE--------- 322 (689)
Q Consensus 276 ~~~~G~D~~Glpie~~~e~~l~--~~~~~~----------------------~~~~~~~~~~~~~~~~~~~--------- 322 (689)
+|++||||||+||+..+++... ...|.. ..+.++++|++.|++++.+
T Consensus 86 lfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~ 165 (1084)
T PLN02959 86 LLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWE 165 (1084)
T ss_pred CCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHH
Confidence 9999999999999999976421 111211 1345667888888887644
Q ss_pred ------------------------HHHHHHHHHHHhccccccCCccccCC--hhhHHHHHHHHHHHHHcCCeeeeccccc
Q psy944 323 ------------------------KGDRIYEQMKLMGSSLDWDRACFTMD--PKLSRAVTEAFVILHEAGDIYRSERLVH 376 (689)
Q Consensus 323 ------------------------~~~~~~~~l~~lGi~~Dw~~~~~T~d--~~~~~~v~~~f~~L~~kGliy~~~~~v~ 376 (689)
|...++++|++||+++||+|+|.|+| |.|.++++|+|.+|+++|+||+|.+||+
T Consensus 166 ~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~ 245 (1084)
T PLN02959 166 IMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTI 245 (1084)
T ss_pred HHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeee
Confidence 33778999999999999999999999 9999999999999999999999999999
Q ss_pred ccCCCCcccCCCceeeeeecCCcc---ccccCCCCCCcccceeccccccCCCCceEEEeeccCccccccchhhcCCCchh
Q psy944 377 WSCSLKSAISDIEVDKVELTGRTP---LRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDER 453 (689)
Q Consensus 377 w~~~~~t~ls~~ev~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y 453 (689)
|||+|+|+|||||+++.+..+... ++++- .++ ....+. .+.+.+.++++|||||||||||+||||||+.+|
T Consensus 246 wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v----~~~-~~~~~~-~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y 319 (1084)
T PLN02959 246 YSPLDGQPCADHDRASGEGVGPQEYVLIKMEV----LPP-FPGKLK-ALEGKKVFLAAATLRPETMYGQTNCWVLPDGKY 319 (1084)
T ss_pred eCCCCCCCchhhHHhcCCCCCcceeEEEEEee----cCc-chhhhh-hcCCCCeEEEEEeCccchhhhheeEEECCCCeE
Confidence 999999999999998755333221 11100 000 000110 123345799999999999999999999999887
Q ss_pred hhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHH-hhcc-cc---cccCcccccccccCc
Q psy944 454 YKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETL-FADV-AV---AVHPEDERYKHLVGK 528 (689)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~-~~~~-~~---~~~~~~~~~~~l~g~ 528 (689)
+. +++. +++.+++++.+.+.+ ++.. .. .....+.+|++|+|+
T Consensus 320 ~~--------------------------------~~~~-~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~ 366 (1084)
T PLN02959 320 GA--------------------------------YEIN-DTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGL 366 (1084)
T ss_pred EE--------------------------------EEec-CCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCC
Confidence 53 2222 356788887777654 3211 00 111246789999999
Q ss_pred eeecCcCCCc-eeeeeCCcccccCCCcceEeCCCCCHHHHHH----------HHHcCC--------CceeeccCCcc---
Q psy944 529 LLVHPFCERK-IPILADSFVEKDFGTGAVKISPGHDHNDYEV----------AQRLNL--------PLITVFNEEGV--- 586 (689)
Q Consensus 529 ~~~~P~~~~~-~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~----------~~~~~l--------~i~~~id~~G~--- 586 (689)
+|.||+++.+ +||+++.||+++.|||+||+|||||++||.+ +++||| +++.+||.+|.
T Consensus 367 ~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~ 446 (1084)
T PLN02959 367 PLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDK 446 (1084)
T ss_pred EEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcc
Confidence 9999999877 9999999999999999999999999999998 577887 45788877653
Q ss_pred -------------------------------cccC---CCCCCCCchhhhHHHHHHHhhccccccCceee-eE-------
Q psy944 587 -------------------------------IIGD---YGEFTGMKRFDARTRVTELISLSISSQGLIKV-DK------- 624 (689)
Q Consensus 587 -------------------------------~~~~---~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~-~~------- 624 (689)
|+.. .|+|+|++|+|||++|++.|+ ++|++.. .+
T Consensus 447 ~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G~~v~eAr~~Ii~~L~----~~G~l~~~~ep~~pv~~ 522 (1084)
T PLN02959 447 SAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLI----EAGQAILYSEPEKKVMS 522 (1084)
T ss_pred hhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcCCcCHHHHHHHHHHHHH----hCCCceeeeEcCCCeEE
Confidence 3322 688999999999999999999 9996542 12
Q ss_pred ----EeeeeecccccccCcHHHHHHHHH-hcCCCeeecccccchhhhhhhchH
Q psy944 625 ----EIERLNKKEEYLKQVIAKLKDQAA-AEDYATKVPENVRTQNSEKLSEAE 672 (689)
Q Consensus 625 ----~i~~l~~~QWFi~~~~~~~k~~~~-~~~~i~~~P~~~~~~~~~~~~~~~ 672 (689)
.+++.+++||||+|+.++||++++ ++++|+|+|+++++++.++++.+.
T Consensus 523 R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~~P~~~~~~~~~wl~~l~ 575 (1084)
T PLN02959 523 RSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNLYSDETRHGFEHTLGWLN 575 (1084)
T ss_pred CCCCEEEEeecCCeeEECCchHHHHHHHHHHcccEEECHHHHHHHHHHHhCCC
Confidence 345567999999998889999997 789999999999998888777654
No 19
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=7.4e-78 Score=716.15 Aligned_cols=408 Identities=23% Similarity=0.300 Sum_probs=342.6
Q ss_pred HHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHH
Q psy944 210 FALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQ 289 (689)
Q Consensus 210 ~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie 289 (689)
.+|++||++|+++++|+.. .+.+++|+|++||||+||.||+||+++++++|+++||+||+|++|+|++||||||+||+
T Consensus 2 ~iE~k~~~~W~~~~~fe~~--~~~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~ 79 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEAD--PDDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPIL 79 (938)
T ss_pred hHHHHHHHHHHhCCCcccC--CCCCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchH
Confidence 4899999999999988874 23578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc------ccccccCHHHHHHHH--HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHH
Q psy944 290 VVVEKKLWREEK------KTRHEIGREKFIEKV--WEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVI 361 (689)
Q Consensus 290 ~~~e~~l~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~ 361 (689)
..+++... +.+ ....++++++|.+.| ++|++++.+.++++|++||+++||+|+|.|+||.|.++++|+|.+
T Consensus 80 ~~aek~~~-~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~ 158 (938)
T TIGR00395 80 GLAELIKR-RDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNK 158 (938)
T ss_pred HHHHHhhh-hhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHH
Confidence 98876431 111 133467888998887 899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCCCceEEEeeccCccccc
Q psy944 362 LHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRLETLFA 441 (689)
Q Consensus 362 L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Tt~P~Tl~~ 441 (689)
|+++|+||++.++|+|||.|+|+||+||+++.+.. ....+..++|++.+.+.++++||||||||||
T Consensus 159 L~e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~--------------~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g 224 (938)
T TIGR00395 159 LKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGV--------------TIVEYILIKFELEDGAFYFVAATLRPETVYG 224 (938)
T ss_pred HHHCCCEecCCeeEeecCCCCCCCchhHhccCCcc--------------ccceEEEEEEEcCCCceEEEEeeCCcchhhc
Confidence 99999999999999999999999999999753321 1122223345555555689999999999999
Q ss_pred cchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhcccccccCcccc
Q psy944 442 DVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDER 521 (689)
Q Consensus 442 n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~ 521 (689)
++||||||+.+|+.. .+ +++.+++++.+.+.+.....-.....+.+
T Consensus 225 ~tav~V~P~~~Y~~~--------------------------------~~--~~e~~i~s~~~~~~~~~q~~~~~~~~~~~ 270 (938)
T TIGR00395 225 VTNCWVNPTITYVIA--------------------------------EV--GGEKWITSKEAFENLSYQKLKYKPIEEVP 270 (938)
T ss_pred ceeEEECCCCcEEEE--------------------------------Ee--CCcEEEEeHHHHHhhhhcccceeEEEEEc
Confidence 999999999887532 11 34778888888877643211011124678
Q ss_pred cccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHc--------------CCCceeeccC----
Q psy944 522 YKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRL--------------NLPLITVFNE---- 583 (689)
Q Consensus 522 ~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~--------------~l~i~~~id~---- 583 (689)
|++|+|+++.||++++.+||++++||++++|||+||+|||||++||.+++++ +++++.+++.
T Consensus 271 g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g 350 (938)
T TIGR00395 271 GKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYG 350 (938)
T ss_pred hHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCccceecCCCC
Confidence 9999999999999999999999999999999999999999999999999874 3445555431
Q ss_pred -----------------------------------CcccccCCCCCCCCchhhhHHHHHHHhhccccccCceeeeE----
Q psy944 584 -----------------------------------EGVIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVDK---- 624 (689)
Q Consensus 584 -----------------------------------~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~---- 624 (689)
+|+|+++.++|+|++|.|||++|++.|+ ++|++...+
T Consensus 351 ~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i~~~L~----~~g~~~~~~~~~~ 426 (938)
T TIGR00395 351 DLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVKADLI----DAGLADVMYEFSE 426 (938)
T ss_pred cccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHHHhHHHHHHHHH----HCCCceEeeecCC
Confidence 5777777789999999999999999999 999875322
Q ss_pred ----------EeeeeecccccccCcHHHHHHHHH-hcCCCeeecccccchhhhhhhchH
Q psy944 625 ----------EIERLNKKEEYLKQVIAKLKDQAA-AEDYATKVPENVRTQNSEKLSEAE 672 (689)
Q Consensus 625 ----------~i~~l~~~QWFi~~~~~~~k~~~~-~~~~i~~~P~~~~~~~~~~~~~~~ 672 (689)
|+++++++||||+|+.++||+.++ ++++|+|+|+++++.+.++++.++
T Consensus 427 ~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~~P~~~~~~~~~~l~~l~ 485 (938)
T TIGR00395 427 SPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKIDWLK 485 (938)
T ss_pred CCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEEeCHHHHHHHHHHHhhhh
Confidence 566779999999998889999997 678999999999988877777544
No 20
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-75 Score=691.25 Aligned_cols=377 Identities=33% Similarity=0.497 Sum_probs=339.6
Q ss_pred CCCCCCCCCchHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEe
Q psy944 197 PQGIPECGTDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTL 276 (689)
Q Consensus 197 ~~~l~~~~~~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~ 276 (689)
+..+|+ .|+++.+|++|+++|+++++|+... ..++++|+|++|||||||.|||||+++++++|+++||+||+|++|+
T Consensus 3 ~~~~~~--~~~~~~~E~~~~~~W~~~~~f~~~~-~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~ 79 (800)
T PRK13208 3 MPELPK--KYDPEELEEKWQKIWEEEGTYKFDP-DERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVF 79 (800)
T ss_pred CCCCCC--CCCHHHHHHHHHHHHHHCCCccccc-ccCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCccc
Confidence 345676 8999999999999999999887642 2357889999999999999999999999999999999999999999
Q ss_pred eCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHH
Q psy944 277 WNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVT 356 (689)
Q Consensus 277 ~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~ 356 (689)
+++||||||+|||.++++.+ |..+.++++++|++.|++|++++.+.|+++|++||+++||+++|.|+||.|.++++
T Consensus 80 ~~~G~D~~Glpie~~~ek~~----g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~ 155 (800)
T PRK13208 80 FPQGWDDNGLPTERKVEKYY----GIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQ 155 (800)
T ss_pred CCCCcCCCcchHHHHHHHHh----CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHH
Confidence 99999999999999998744 56677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCCCceEEEeeccC
Q psy944 357 EAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRL 436 (689)
Q Consensus 357 ~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Tt~P 436 (689)
|+|.+|+++|+||++.++|+|||.|+|+||++||++.+..+. ... ++|++.+ +.+++||||||
T Consensus 156 ~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~~~--------------~~~--ikf~~~~-~~~l~v~TtrP 218 (800)
T PRK13208 156 KSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYREREGK--------------LNY--IKFPVED-GEEIEIATTRP 218 (800)
T ss_pred HHHHHHHHCCCeeecCcccccCCCCCCccchhhhccccccce--------------EEE--EEEEecC-CCEEEEEeCCc
Confidence 999999999999999999999999999999999987554332 222 2344443 35899999999
Q ss_pred ccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhccccccc
Q psy944 437 ETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVH 516 (689)
Q Consensus 437 ~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~~ 516 (689)
|||||++||||||+++.
T Consensus 219 eTl~g~~ai~v~p~~~~--------------------------------------------------------------- 235 (800)
T PRK13208 219 ELLPACVAVVVHPDDER--------------------------------------------------------------- 235 (800)
T ss_pred chhhhCeEEEECCCchH---------------------------------------------------------------
Confidence 99999999999998531
Q ss_pred CcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCcccccCCCCCCC
Q psy944 517 PEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTG 596 (689)
Q Consensus 517 ~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~~~~~~~~~~G 596 (689)
+++|.|+++.||++++.+||++++||++++|||+||++|+|+++||+++++||||++++||++|+|++++|+|+|
T Consensus 236 -----~~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G 310 (800)
T PRK13208 236 -----YKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAG 310 (800)
T ss_pred -----HHHhcCCEEEcCCCCCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCC
Confidence 246789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hcCCCeeeccccc
Q psy944 597 MKRFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AEDYATKVPENVR 661 (689)
Q Consensus 597 ~~v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~~~i~~~P~~~~ 661 (689)
+++++|+++|++.|+ ++|++...+ .+++++++||||++ +++|+.++ .+++++|+|++.+
T Consensus 311 ~~~~~a~~~i~~~L~----~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~--~~~~~~~~~~~~~~~~~P~~~~ 384 (800)
T PRK13208 311 LTIEEARKKIVEDLK----SGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKV--LDLKEELLERGKEINWYPEHMR 384 (800)
T ss_pred CCHHHHHHHHHHHHH----hCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeC--HHHHHHHHHhhcCcEEECHHHH
Confidence 999999999999999 999876532 45667899999995 88999987 6788999999999
Q ss_pred chhhhhhhch
Q psy944 662 TQNSEKLSEA 671 (689)
Q Consensus 662 ~~~~~~~~~~ 671 (689)
+.+.++++++
T Consensus 385 ~~~~~~l~~~ 394 (800)
T PRK13208 385 VRLENWIEGL 394 (800)
T ss_pred HHHHHHHHhc
Confidence 9999888864
No 21
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-70 Score=651.23 Aligned_cols=368 Identities=24% Similarity=0.356 Sum_probs=305.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcc------cccccCHHHHH--HHHHHHHH
Q psy944 250 LHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKK------TRHEIGREKFI--EKVWEWKK 321 (689)
Q Consensus 250 lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~------~~~~~~~~~~~--~~~~~~~~ 321 (689)
||+||+++++++|+++||+||+||+|+|++||||||+||+..+++ +..+... ....++.+++. ..+++|++
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~-~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~ 79 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAER-IARGDPETIELYKSLYGIPEEELEKFKDPEYIVE 79 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHH-hhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHH
Confidence 799999999999999999999999999999999999999998865 3221110 01122333222 34699999
Q ss_pred HHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCceeeeeecCCccc
Q psy944 322 EKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPL 401 (689)
Q Consensus 322 ~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~ 401 (689)
++.+.++++|++||+++||+|+|.|+||.|+++++|+|.+|+++|+||+|.++|+|||.|+|+||++|+++.+.
T Consensus 80 ~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~------ 153 (897)
T PRK12300 80 YFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEE------ 153 (897)
T ss_pred HhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975321
Q ss_pred cccCCCCCCcccceeccccccCCCCceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccc
Q psy944 402 RVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFG 481 (689)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (689)
++++.+..++|+ .+.+.++++|||||||||||+||||||+.+|+..
T Consensus 154 --------~~~~~~~~ikf~-~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~------------------------- 199 (897)
T PRK12300 154 --------PEIVEYTLIKFE-ESEDLILPAATLRPETIFGVTNLWVNPDATYVKA------------------------- 199 (897)
T ss_pred --------CCcceEEEEEEe-CCCceEEEEEECCcchhccceEEEECCCCcEEEE-------------------------
Confidence 122222222333 3445789999999999999999999999887531
Q ss_pred eeeeEeEEeecCCceEEEEeccHHHHhhc-ccccccCcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCC
Q psy944 482 VLASFAYKLEDGSGEIVVATTRLETLFAD-VAVAVHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISP 560 (689)
Q Consensus 482 ~~~~~~y~~~~~~~~~~i~~~~~e~~~~~-~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~P 560 (689)
++ +++.+++++.+.+.+... ..+.+ ..+.+|++|+|++|.||++++.+||++++||++++|||+||+||
T Consensus 200 -------~~--~~e~~i~a~~~~~~~~~~~~~~~~-~~~~~G~~l~G~~~~~Pl~~~~ipil~~~~V~~~~GTGvV~~~P 269 (897)
T PRK12300 200 -------EV--DGEKWIVSKEAAEKLSFQDRDVEI-IEEIKGSELIGKKVKNPVTGKEVPILPADFVDPDNGTGVVMSVP 269 (897)
T ss_pred -------EE--CCEEEEEeHHHHHHHhcCcCCceE-EEEeehHHhcCCEEECCCCCCeEEEeccCeeecCCCeeeEEeCC
Confidence 22 357788998888876432 11111 25678999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHcC--------CCceeec-----------------------c---------------CCcccccCCCCC
Q psy944 561 GHDHNDYEVAQRLN--------LPLITVF-----------------------N---------------EEGVIIGDYGEF 594 (689)
Q Consensus 561 ah~~~D~~~~~~~~--------l~i~~~i-----------------------d---------------~~G~~~~~~~~~ 594 (689)
|||++||+++++++ |+++.++ | ++|+|+++.|+|
T Consensus 270 ah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~ 349 (897)
T PRK12300 270 AHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENTGEY 349 (897)
T ss_pred CCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeecccCc
Confidence 99999999999998 6654444 3 489999888999
Q ss_pred CCCchhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hcCCCeeeccc
Q psy944 595 TGMKRFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AEDYATKVPEN 659 (689)
Q Consensus 595 ~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~~~i~~~P~~ 659 (689)
+|++++||+++|++.|+ ++|++.... |+++.+++||||+|+.++||++++ ++++|+|+|++
T Consensus 350 ~G~~v~eA~~~I~~~L~----~~g~~~~~~~~~~~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~~~~~~~P~~ 425 (897)
T PRK12300 350 AGKPVREAREKITKDLI----EKGIADIMYEFSNRPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKALDNMEIIPEE 425 (897)
T ss_pred CCeEHHHHHHHHHHHHH----HCCCeEEEEecCCCCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHHccCEEECHH
Confidence 99999999999999999 999876433 566667899999998789999998 67999999999
Q ss_pred ccchhhhhhhchH
Q psy944 660 VRTQNSEKLSEAE 672 (689)
Q Consensus 660 ~~~~~~~~~~~~~ 672 (689)
+++++.++++.+.
T Consensus 426 ~~~~~~~~l~~l~ 438 (897)
T PRK12300 426 YRKEFENTIDWLK 438 (897)
T ss_pred HHHHHHHHHhhhh
Confidence 9998888877654
No 22
>KOG0434|consensus
Probab=100.00 E-value=1.5e-70 Score=586.43 Aligned_cols=415 Identities=21% Similarity=0.286 Sum_probs=363.8
Q ss_pred CchHHHHHHhhhccccccc-cccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccc
Q psy944 205 TDALRFALAAYMSQGERTG-RRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDH 283 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~-~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~ 283 (689)
.+++..-|+++.++|++.+ |..++....++++|.+.||||++||.+|.||.+..+|+|++.||..|+||.|.+.|||||
T Consensus 7 n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~ 86 (1070)
T KOG0434|consen 7 NFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDT 86 (1070)
T ss_pred cCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeeccccc
Confidence 5777788999999999998 666776778999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHH
Q psy944 284 AGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILH 363 (689)
Q Consensus 284 ~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~ 363 (689)
||+|+|..++++++.....+...+++.++..+|+..+..+..++++...|||.|+|+++-|.|++|.|++.|||+|++|+
T Consensus 87 HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~ 166 (1070)
T KOG0434|consen 87 HGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELH 166 (1070)
T ss_pred CCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHH
Confidence 99999999999998777677778999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCCCceEEEeeccCccccccc
Q psy944 364 EAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRLETLFADV 443 (689)
Q Consensus 364 ~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Tt~P~Tl~~n~ 443 (689)
++|++|||.+.++||..|.|+||+.|.. .+|++..|+.+.+.|.. +++.+..+++|||||||||+|.
T Consensus 167 ~kglVYRG~kVMP~STac~TPLSNFEa~------------QNYKdV~DPav~v~F~l-i~~~~~slvAWTTTPWTLPSNl 233 (1070)
T KOG0434|consen 167 EKGLVYRGFKVMPYSTACTTPLSNFEAQ------------QNYKDVPDPAVFVAFPL-IGDPNVSLVAWTTTPWTLPSNL 233 (1070)
T ss_pred hcCceecceeeeccccccCCcccchhcc------------cCcccCCCCeEEEEeec-cCCcceeEEEEecCCccCccce
Confidence 9999999999999999999999999874 25788889998887643 3445789999999999999999
Q ss_pred hhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhccccc--ccCcccc
Q psy944 444 AVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVA--VHPEDER 521 (689)
Q Consensus 444 ~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~--~~~~~~~ 521 (689)
|+||||++.|++. +-+..++.+++.++|+..++...+-. -..+.+.
T Consensus 234 al~Vnp~~~Yvki--------------------------------~dk~~~k~yil~esrl~~l~k~~~~~~~eiler~~ 281 (1070)
T KOG0434|consen 234 ALCVNPDFQYVKI--------------------------------KDKTTGKKYILMESRLGELYKNPKNDNYEILERFQ 281 (1070)
T ss_pred eEEEcCCeEEEEE--------------------------------EeccCCeEEEEeHHHHHHHhcCcccccHHHHHhcc
Confidence 9999999887642 11235788999999998887532110 0124578
Q ss_pred cccccCceeecCcC-------CCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCC-----CceeeccCCccccc
Q psy944 522 YKHLVGKLLVHPFC-------ERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNL-----PLITVFNEEGVIIG 589 (689)
Q Consensus 522 ~~~l~g~~~~~P~~-------~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l-----~i~~~id~~G~~~~ 589 (689)
|+.|.|++|..++- ...+.|+.++||+.+.||||||+||++|++||.+|.+.|+ -++|+||++|+|+.
T Consensus 282 G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Ts 361 (1070)
T KOG0434|consen 282 GAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTS 361 (1070)
T ss_pred cccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCccccCCcccc
Confidence 99999999998874 4689999999999999999999999999999999999986 46899999999999
Q ss_pred CCCCCCCCchhhhHHHHHHHhhccccccCceeeeE-----------Eeeeee---cccccccCcHHHHHHHHH-hcCCCe
Q psy944 590 DYGEFTGMKRFDARTRVTELISLSISSQGLIKVDK-----------EIERLN---KKEEYLKQVIAKLKDQAA-AEDYAT 654 (689)
Q Consensus 590 ~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~-----------~i~~l~---~~QWFi~~~~~~~k~~~~-~~~~i~ 654 (689)
+..+|+|..|+||++.|++.|+ ++|.+.... ..+||| .|.||++ .+.+.++++ ++++..
T Consensus 362 ev~dfaG~YVKDaDK~Ii~~lk----~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVr--Vk~~v~~ll~nn~~t~ 435 (1070)
T KOG0434|consen 362 EVTDFAGQYVKDADKLIIRSLK----ASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVR--VKNIVDQLLRNNMKTH 435 (1070)
T ss_pred ccccccceeeccchHHHHHHHH----hcCceeeeeeeeeccCceecCCChHHHhhccHhhhh--HHHHHHHHHhcccccc
Confidence 9999999999999999999999 888655333 235654 7999999 688998887 678999
Q ss_pred eecccccc-hhhhhhhc
Q psy944 655 KVPENVRT-QNSEKLSE 670 (689)
Q Consensus 655 ~~P~~~~~-~~~~~~~~ 670 (689)
|||..+|. +|.||+.+
T Consensus 436 WVP~~ikeKRF~NWL~n 452 (1070)
T KOG0434|consen 436 WVPQNIKEKRFANWLKN 452 (1070)
T ss_pred cCChhhhHHHHHHHHhh
Confidence 99999985 45556544
No 23
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=7.8e-68 Score=622.42 Aligned_cols=373 Identities=25% Similarity=0.404 Sum_probs=297.8
Q ss_pred chHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccccc
Q psy944 206 DALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAG 285 (689)
Q Consensus 206 ~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~G 285 (689)
|+++.+|++||++|+++++|+.. .+.++++|+++++||||||.|||||+++++++|+++||+||+||+|++++||||||
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~-~~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~G 79 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFT-DDSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFG 79 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccC-CCCCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCC
Confidence 68899999999999999977764 33567889999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHc
Q psy944 286 IATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEA 365 (689)
Q Consensus 286 lpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~k 365 (689)
+|++.++++ .|..+ .+|++++++.|+++|++||+++||+++|.|++|.|+++++|+|.+|+++
T Consensus 80 lpie~~a~~-----~g~~p------------~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~k 142 (842)
T TIGR00396 80 LPAENAAIK-----RGIHP------------AKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEK 142 (842)
T ss_pred hHHHHHHHH-----cCCCH------------HHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHC
Confidence 999988754 23222 3689999999999999999999999999999999999999999999999
Q ss_pred CCeeeecccccccCCCCcccCCCceeeeeec---CC---------ccccccCCCCCCc----------------------
Q psy944 366 GDIYRSERLVHWSCSLKSAISDIEVDKVELT---GR---------TPLRVPGYANPVD---------------------- 411 (689)
Q Consensus 366 Gliy~~~~~v~w~~~~~t~ls~~ev~~~~~~---~~---------~~~~~~~~~~~~~---------------------- 411 (689)
|+||++.++|+|||.|+|+||++||+..... +. .+++++.|++.+.
T Consensus 143 Gliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig 222 (842)
T TIGR00396 143 GLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIG 222 (842)
T ss_pred CCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhccc
Confidence 9999999999999999999999999432111 01 1233333332110
Q ss_pred ccceeccccccCCCCceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEee
Q psy944 412 FGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLE 491 (689)
Q Consensus 412 ~~~~~~~~~~~~~~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 491 (689)
.+....+.|++.+.+.+++|||||||||||++||||||+++|+......
T Consensus 223 ~s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~------------------------------- 271 (842)
T TIGR00396 223 KSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAEN------------------------------- 271 (842)
T ss_pred ccceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcc-------------------------------
Confidence 0112223445554446899999999999999999999999987642100
Q ss_pred cCCceEEEEeccHHHHhhccc----cc-ccCcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHH
Q psy944 492 DGSGEIVVATTRLETLFADVA----VA-VHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHND 566 (689)
Q Consensus 492 ~~~~~~~i~~~~~e~~~~~~~----~~-~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D 566 (689)
+ .+++.+..... +. ......++..|.|++|+||++++.+||+.++||++++|||+||+|||||++|
T Consensus 272 --~-------~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D 342 (842)
T TIGR00396 272 --N-------PKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLTGEKIPIWVANYVLASYGTGAVMGVPAHDERD 342 (842)
T ss_pred --h-------HHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCCCCEeEEEEeCcccCCCCCCeEEEcCCCCHHH
Confidence 0 00111111100 00 0012346678999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCceeecc------------CCcccccCCCCCCCCchhhhHHHHHHHhhccccccCceeeeE---Eeeeeec
Q psy944 567 YEVAQRLNLPLITVFN------------EEGVIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVDK---EIERLNK 631 (689)
Q Consensus 567 ~~~~~~~~l~i~~~id------------~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~---~i~~l~~ 631 (689)
|++|++||||++++|+ ++|+|++ .+.|+|+.+.+|+++|++.|+ ++|++.... -....++
T Consensus 343 ~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~-~~~~~Gl~~~~A~~~Ii~~L~----~~g~~~~~v~yrlrDW~IS 417 (842)
T TIGR00396 343 FEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVN-SGEFNGLNSSEAREAIIAMLE----KEGKGKRKVNYRLRDWLFS 417 (842)
T ss_pred HHHHHHhCCCcceeeCCcccccccccccCCceEec-chhcCCCCHHHHHHHHHHHHH----HcCCCCceEEeecccceee
Confidence 9999999999999998 3788884 589999999999999999999 899875432 1233467
Q ss_pred ccccccCcHH
Q psy944 632 KEEYLKQVIA 641 (689)
Q Consensus 632 ~QWFi~~~~~ 641 (689)
+|-|+.+.++
T Consensus 418 RQRyWG~PIP 427 (842)
T TIGR00396 418 RQRYWGEPIP 427 (842)
T ss_pred cccccCCceE
Confidence 7877776444
No 24
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.3e-67 Score=617.62 Aligned_cols=386 Identities=25% Similarity=0.352 Sum_probs=298.1
Q ss_pred CCCCCCCchHHHHHHhhhccccccccccccc-cCCCCCceeecCCCCCCCcc-chhHHHHHHHHHHHHHHHHHhcCCeEe
Q psy944 199 GIPECGTDALRFALAAYMSQGERTGRRKSIG-EKNPKGKFVMVIPPPNVTGT-LHLGHALTNAVEDSITRWNRMKGKTTL 276 (689)
Q Consensus 199 ~l~~~~~~~~~~iE~~~~~~W~~~~~~~~~~-~~~~~~~f~i~~~pP~~nG~-lHiGH~~~~~i~D~laRy~rm~G~~V~ 276 (689)
.+++ .|+++.+|.+||++|+++++|+... .+.++++|+++++||||||. |||||+++++++|+++||+||+||+|+
T Consensus 75 ~~~~--~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl 152 (963)
T PLN02563 75 AAKR--AYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVL 152 (963)
T ss_pred ccCC--CCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeec
Confidence 4666 8999999999999999999777542 24567889999999999996 999999999999999999999999999
Q ss_pred eCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHH
Q psy944 277 WNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVT 356 (689)
Q Consensus 277 ~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~ 356 (689)
|++|||+||+|+|.++.+ .|.. +..|+.++++.|+++|++||+++||+++|.|++|.|++++|
T Consensus 153 ~~~G~D~~GlPiE~~a~~-----~g~~------------p~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q 215 (963)
T PLN02563 153 HPMGWDAFGLPAEQYAIE-----TGTH------------PKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQ 215 (963)
T ss_pred ccccccccCcHHHHHHHH-----cCCC------------hHHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHH
Confidence 999999999999987643 2222 34678899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeeecccccccCCCCcccCCCceeee--eecCC---------ccccccCCCCCCcc-------------
Q psy944 357 EAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKV--ELTGR---------TPLRVPGYANPVDF------------- 412 (689)
Q Consensus 357 ~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~~--~~~~~---------~~~~~~~~~~~~~~------------- 412 (689)
|+|.+|+++||||++.++|+|||.|+|+||++||++. +..+. .+++++.|++...-
T Consensus 216 ~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~ 295 (963)
T PLN02563 216 WIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKE 295 (963)
T ss_pred HHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHH
Confidence 9999999999999999999999999999999999753 11111 12334444332110
Q ss_pred --------cceeccccccCC-----CCceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcc
Q psy944 413 --------GVLASFAYKLDD-----GSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVD 479 (689)
Q Consensus 413 --------~~~~~~~~~~~~-----~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (689)
+....+.|++.+ .+.+++|||||||||||+++|+|+|+++|+...+.... ++
T Consensus 296 ~q~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~-------------~~-- 360 (963)
T PLN02563 296 MQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQ-------------KE-- 360 (963)
T ss_pred HHHHhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccc-------------hH--
Confidence 111223344433 23589999999999999999999999998754321000 00
Q ss_pred cceeeeEeEEeecCCceEEEEeccHHHHhhcccccccCcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeC
Q psy944 480 FGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKIS 559 (689)
Q Consensus 480 ~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~ 559 (689)
. + +.++.+..+...+... .....++..+.|++++||++++.+||+.++||++++|||+||+|
T Consensus 361 -~--------v----~~y~~~~~~~~~~~~~-----~~~~~k~g~~~g~~~~~P~~~~~iPI~~ad~V~~~~GTGaVm~~ 422 (963)
T PLN02563 361 -A--------V----EEYVDAASRKSDLERT-----ELQKEKTGVFTGSYAINPATGEAIPIWVADYVLGSYGTGAIMAV 422 (963)
T ss_pred -H--------H----HHHHHHHhchhHHhhh-----hccceecccccCcEEeccCCCCeeEEEEecccCCCCCCCeEEEc
Confidence 0 0 0011111111111100 01234567899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHcCCCceeeccC--------------CcccccCCCC----CCCCchhhhHHHHHHHhhccccccCcee
Q psy944 560 PGHDHNDYEVAQRLNLPLITVFNE--------------EGVIIGDYGE----FTGMKRFDARTRVTELISLSISSQGLIK 621 (689)
Q Consensus 560 Pah~~~D~~~~~~~~l~i~~~id~--------------~G~~~~~~~~----~~G~~v~~a~~~i~~~L~~~~~~~g~~~ 621 (689)
||||++||+++++||||++++|+. +|+++ +.+. |+|+.+++|+++|++.|+ ++|++.
T Consensus 423 PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~-ns~~~~~~~~Gl~~~eA~~~Ii~~L~----~~g~~~ 497 (963)
T PLN02563 423 PAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIV-NSSSSGLDINGLSSKEAAKKVIEWLE----ETGNGK 497 (963)
T ss_pred CCCCHHHHHHHHHcCCCceeeeccCccccccccccccCceeEe-cCCCcccccCCcCHHHHHHHHHHHHH----hCCCCC
Confidence 999999999999999999999942 35554 3454 999999999999999999 898875
Q ss_pred eeE---EeeeeecccccccCcHH
Q psy944 622 VDK---EIERLNKKEEYLKQVIA 641 (689)
Q Consensus 622 ~~~---~i~~l~~~QWFi~~~~~ 641 (689)
..- -....+++|-|+...++
T Consensus 498 ~~v~y~lrDW~ISRQRyWG~PIP 520 (963)
T PLN02563 498 KKVNYKLRDWLFARQRYWGEPIP 520 (963)
T ss_pred CeeEecCCCceEeeecccCCceE
Confidence 432 12334677777776544
No 25
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.6e-66 Score=608.62 Aligned_cols=352 Identities=26% Similarity=0.428 Sum_probs=283.3
Q ss_pred CchHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccc
Q psy944 205 TDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHA 284 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~ 284 (689)
+|+++.+|++|+++|+++++|+... +.+++|+++++||||||.|||||+++++++|+++||+||+|++|++++|||||
T Consensus 4 ~y~~~~iE~~w~~~W~~~~~f~~~~--~~~~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~ 81 (805)
T PRK00390 4 RYNPKEIEKKWQKYWEENKTFKTTE--DSSKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAF 81 (805)
T ss_pred CCCHHHHHHHHHHHHHHCCCcccCc--cCCCCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCC
Confidence 7899999999999999999877642 23347999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHH
Q psy944 285 GIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHE 364 (689)
Q Consensus 285 Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~ 364 (689)
|+|++.++++. |.. +++|++++++.|+++|++||+++||+++|.|+||.|.++++++|.+|++
T Consensus 82 Glpie~~a~~~-----g~~------------~~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 144 (805)
T PRK00390 82 GLPAENAAIKT-----GTH------------PAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYE 144 (805)
T ss_pred CCHHHHHHHHc-----CCC------------HHHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHH
Confidence 99999887542 222 3578999999999999999999999999999999999999999999999
Q ss_pred cCCeeeecccccccCCCCcccCCCceeeee--ecCC---------ccccccCCCCCC--------------c--------
Q psy944 365 AGDIYRSERLVHWSCSLKSAISDIEVDKVE--LTGR---------TPLRVPGYANPV--------------D-------- 411 (689)
Q Consensus 365 kGliy~~~~~v~w~~~~~t~ls~~ev~~~~--~~~~---------~~~~~~~~~~~~--------------~-------- 411 (689)
+|+||++.++|+|||.|+|+||++||+... ..+. .++.+..|++.+ .
T Consensus 145 ~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig 224 (805)
T PRK00390 145 KGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIG 224 (805)
T ss_pred CCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhcc
Confidence 999999999999999999999999996321 1111 112222221110 0
Q ss_pred ccceeccccccCCCCceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEee
Q psy944 412 FGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLE 491 (689)
Q Consensus 412 ~~~~~~~~~~~~~~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 491 (689)
.+....+.|++.+.+.+++||||||||||||+||||||+++|+....+.
T Consensus 225 ~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~------------------------------- 273 (805)
T PRK00390 225 RSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQ------------------------------- 273 (805)
T ss_pred ccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcc-------------------------------
Confidence 0112223455555456899999999999999999999999988643210
Q ss_pred cCCceEEEEeccHHHHhhc----cccc--ccCcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHH
Q psy944 492 DGSGEIVVATTRLETLFAD----VAVA--VHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHN 565 (689)
Q Consensus 492 ~~~~~~~i~~~~~e~~~~~----~~~~--~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~ 565 (689)
+ ...+.+... ..+. ....+..|. |.|++|.||++++.+||+.++||++++|||+||+|||||++
T Consensus 274 ---~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~ 343 (805)
T PRK00390 274 ---N------PAVAAFIEECKKKSDLERQTETKEKTGV-FTGLYAIHPLTGEKIPVWIADYVLMDYGTGAVMAVPAHDQR 343 (805)
T ss_pred ---h------HHHHHHHHHHhhhcchhhhhcccceeee-ecCcEEECCCCCCeeeEEEeccccCCCCCCeEEEcCCCCHH
Confidence 0 001111110 0000 011234564 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCceeeccC--------------CcccccCCCCCCCCchhhhHHHHHHHhhccccccCcee
Q psy944 566 DYEVAQRLNLPLITVFNE--------------EGVIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIK 621 (689)
Q Consensus 566 D~~~~~~~~l~i~~~id~--------------~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~ 621 (689)
||+++++||||++++||+ +|+|++ .+.|+|+.+++|+++|++.|+ ++|++.
T Consensus 344 D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~-~~~~~Gl~~~~a~~~Ii~~L~----~~g~~~ 408 (805)
T PRK00390 344 DFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLIN-SGELDGLDSEEAKEAIIAWLE----EKGLGK 408 (805)
T ss_pred HHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEe-ccccCCCCHHHHHHHHHHHHH----HcCCCC
Confidence 999999999999999974 555553 388999999999999999999 888865
No 26
>KOG0433|consensus
Probab=100.00 E-value=1.8e-63 Score=537.85 Aligned_cols=410 Identities=21% Similarity=0.259 Sum_probs=333.8
Q ss_pred CchHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccc
Q psy944 205 TDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHA 284 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~ 284 (689)
++|....+.++.+.|....+......+.++..|++++ +||.||||||+|++++|++.||+.++|+++++++|||||
T Consensus 29 ~~Ns~gr~~q~~evi~~~~~~~~qls~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDch 104 (937)
T KOG0433|consen 29 HFNSTGRIGQVIEVIQPPEILSSQLSDQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCH 104 (937)
T ss_pred ccccccchHHHHHHhCChHHHHHHHhhccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcC
Confidence 4555566677788888777666544566778899999 999999999999999999999999999999999999999
Q ss_pred cChHH-HHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHH
Q psy944 285 GIATQ-VVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILH 363 (689)
Q Consensus 285 Glpie-~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~ 363 (689)
|+|+| .++-+.+..+ -..++.-+.+++.+.++++.++.+++.|+++|+..||.++|.|++|.|.....++|.+|+
T Consensus 105 GLPiEs~kalssl~~~----~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~ly 180 (937)
T KOG0433|consen 105 GLPIESTKALSSLTES----EGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLY 180 (937)
T ss_pred CCchHHHHHhhhhhhc----cccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHH
Confidence 99999 4665544322 245667788999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccc-----c-----ccCCCCceEEEee
Q psy944 364 EAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFA-----Y-----KLDDGSGEIVVAT 433 (689)
Q Consensus 364 ~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~l~~~T 433 (689)
++|||||+.+||+|+|+..|+|++.|+||.+-... .+.+..|. + .....+.+++|||
T Consensus 181 ekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S-------------~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWT 247 (937)
T KOG0433|consen 181 EKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQS-------------TSAYFRFKLINFSSSAHSEDSKIPQIYALVWT 247 (937)
T ss_pred hccceeccCCcceecCcchhhhhhhhccCCcCCcc-------------eeEEEEEeccCCccccccCCCccCcEEEEEEe
Confidence 99999999999999999999999999998553221 12222221 1 0112348999999
Q ss_pred ccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhcccc
Q psy944 434 TRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAV 513 (689)
Q Consensus 434 t~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~ 513 (689)
|||||||+|.|||+||+..|.... +....+++.++||+...+++-...+.
T Consensus 248 TTPWTlPsN~Ai~~n~~~~Yslv~------------------------------~~~~~~~~~ylvas~L~~~fe~~~~~ 297 (937)
T KOG0433|consen 248 TTPWTLPSNNAISVNSAIQYSLVQ------------------------------FDNNPTSTFYLVASKLLEEFEKSSDR 297 (937)
T ss_pred CCCccccccceeeeccccceEEEE------------------------------eccCCcceEEEEccchhhhhhhhcCc
Confidence 999999999999999997754211 11123577899999999988766554
Q ss_pred ccc-CcccccccccCceeecCcC-CCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCcccccCC
Q psy944 514 AVH-PEDERYKHLVGKLLVHPFC-ERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY 591 (689)
Q Consensus 514 ~~~-~~~~~~~~l~g~~~~~P~~-~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~~~~~~ 591 (689)
... ..+.+|..|.|.+|.||+. +...|++.++||+++.|||+||+|||||++||.++-++|||+.+++|+.|+++.++
T Consensus 298 k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~yT~ea 377 (937)
T KOG0433|consen 298 KCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREA 377 (937)
T ss_pred ceeeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCCceeccc
Confidence 433 2478899999999999976 46799999999999999999999999999999999999999999999999999988
Q ss_pred C-CCCCCchh-hhHHHHHHHhhccccccCcee--------eeEEeeeeecccccccCcHHHHHHHHH-hcCCCeeecccc
Q psy944 592 G-EFTGMKRF-DARTRVTELISLSISSQGLIK--------VDKEIERLNKKEEYLKQVIAKLKDQAA-AEDYATKVPENV 660 (689)
Q Consensus 592 ~-~~~G~~v~-~a~~~i~~~L~~~~~~~g~~~--------~~~~i~~l~~~QWFi~~~~~~~k~~~~-~~~~i~~~P~~~ 660 (689)
| .+.|+.|. |..+.|+..|...+....-+. .++++....++||||+ .+++|..+. ++++|+|+|...
T Consensus 378 ~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~--~e~~k~~A~~al~~Vk~~P~~~ 455 (937)
T KOG0433|consen 378 GHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFID--VEEIKKRASMALDDVKVAPGDS 455 (937)
T ss_pred ccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecchhheee--HHhhhhHHHHHHhhceeCCcch
Confidence 8 68999996 578888888872222222222 2224444579999999 588998887 899999999987
Q ss_pred cchhhhh
Q psy944 661 RTQNSEK 667 (689)
Q Consensus 661 ~~~~~~~ 667 (689)
..++...
T Consensus 456 ~~rl~~~ 462 (937)
T KOG0433|consen 456 DLRLKQL 462 (937)
T ss_pred HHHHHHH
Confidence 7755543
No 27
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-63 Score=560.96 Aligned_cols=395 Identities=23% Similarity=0.301 Sum_probs=326.1
Q ss_pred CchHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccc
Q psy944 205 TDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHA 284 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~ 284 (689)
.|++..||++||+.|++++.|+...+.+..+||++++++|||||.||+||+|||+++|++|||+||+||||+||||||++
T Consensus 4 ~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdaf 83 (814)
T COG0495 4 RYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAF 83 (814)
T ss_pred ccchHHHHHHHHHHHHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCccccc
Confidence 68889999999999999998887533222369999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHH
Q psy944 285 GIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHE 364 (689)
Q Consensus 285 Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~ 364 (689)
|+|++..|.+. +.. ...|+.++++.+++||++||+++||+|+|.|+||+|++++||+|.+|++
T Consensus 84 GlPae~~A~~~-----~~~------------P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~e 146 (814)
T COG0495 84 GLPAENAAIKI-----GTD------------PAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYE 146 (814)
T ss_pred CchHHHHHHHh-----CCC------------hHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHH
Confidence 99999888652 332 3589999999999999999999999999999999999999999999999
Q ss_pred cCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCCC-----ceEEEeeccCccc
Q psy944 365 AGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGS-----GEIVVATTRLETL 439 (689)
Q Consensus 365 kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~Tt~P~Tl 439 (689)
+||||++.++|+|||.|+|+|++|||.....+ .....+....+..++|++.+.. ....+.|.+|||+
T Consensus 147 kGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~--------r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~V 218 (814)
T COG0495 147 KGLAYRKEAPVNWCPVDGTVLANEQVIDGGCW--------RCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETV 218 (814)
T ss_pred CCCEEeccccceeCCCcCCccccceeecCCcc--------cCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhH
Confidence 99999999999999999999999999642111 1234566667778888887653 2466777899999
Q ss_pred cccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecC--CceEEEEeccHHHHhhcccccccC
Q psy944 440 FADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDG--SGEIVVATTRLETLFADVAVAVHP 517 (689)
Q Consensus 440 ~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~--~~~~~i~~~~~e~~~~~~~~~~~~ 517 (689)
.+.|+.||+|+..|.+ .|.+.+. ...+.++|+|+.+++|.+.+++.|
T Consensus 219 k~mq~nWIg~s~g~~v-------------------------------~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~ 267 (814)
T COG0495 219 KGMQRNWIGPSEGYEV-------------------------------AFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAP 267 (814)
T ss_pred HHHHHcCcCCCCCeEE-------------------------------EEecCCcccceeeeeeeccCccccCeEEEEEeC
Confidence 9999999999865432 2333222 346888999999998877665544
Q ss_pred cccc-----------------------------------cccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCC
Q psy944 518 EDER-----------------------------------YKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGH 562 (689)
Q Consensus 518 ~~~~-----------------------------------~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah 562 (689)
++.. -.-..|..++||++++.+||+.++||.+.+|||+||.||||
T Consensus 268 ~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~ygtgavm~vpah 347 (814)
T COG0495 268 EHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGTGAVMGVPAH 347 (814)
T ss_pred CchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCCcceeccccccCCCCCCcCCEEEeCcccccccccceecCCCC
Confidence 3320 01235677889999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCceeeccC-----------CcccccCCCCCCCCchhhhHHHHHHHhhccccccCceeeeEEeeeeec
Q psy944 563 DHNDYEVAQRLNLPLITVFNE-----------EGVIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVDKEIERLNK 631 (689)
Q Consensus 563 ~~~D~~~~~~~~l~i~~~id~-----------~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~~i~~l~~ 631 (689)
+..|+++|++|++|+..+|.. +|++. +++.++|+...+|...|+..|. ....
T Consensus 348 d~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~li-nS~~~~gl~~e~a~~~~~~~l~----------------~~~~ 410 (814)
T COG0495 348 DERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLI-NSGGLDGLDYEEAKVKIRCGLV----------------KRGL 410 (814)
T ss_pred CchhhHHHHhcCCCeEEEEecCCCcccceeccCceEe-ccccccCcchhHHHHHHHHhHH----------------HhcC
Confidence 999999999999999988854 45665 5778999988877655555544 2368
Q ss_pred ccccccCcHHHH-HHHHH-hcCCCeeecccccchhhhhhhchH
Q psy944 632 KEEYLKQVIAKL-KDQAA-AEDYATKVPENVRTQNSEKLSEAE 672 (689)
Q Consensus 632 ~QWFi~~~~~~~-k~~~~-~~~~i~~~P~~~~~~~~~~~~~~~ 672 (689)
+|||++|.+.+| +++.. ..+.|..+|...++.+...++.|-
T Consensus 411 ~q~~v~Y~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lp 453 (814)
T COG0495 411 GQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLP 453 (814)
T ss_pred CceEEecccchHHHHHHHHhCCCcceeEcccCCcccCchHhcC
Confidence 999999998888 88887 688999999999987666655553
No 28
>KOG0437|consensus
Probab=100.00 E-value=2.1e-53 Score=458.51 Aligned_cols=419 Identities=24% Similarity=0.291 Sum_probs=328.8
Q ss_pred CchHHHHHHhhhccccccccccccc---cCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCc
Q psy944 205 TDALRFALAAYMSQGERTGRRKSIG---EKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGC 281 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~~~~~~~---~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~ 281 (689)
++.+..+|+++|+.|++.+.|+... ..+++++|+++.|+||+||.||+||+++....|+.+-|+||+|++|+|++||
T Consensus 11 ~d~L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgF 90 (1080)
T KOG0437|consen 11 RDSLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGF 90 (1080)
T ss_pred HHHHHHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeeccc
Confidence 4567899999999999988666543 3456789999999999999999999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHHHHHhc---cc----------------------------------------------cc--ccCHH
Q psy944 282 DHAGIATQVVVEKKLWREEK---KT----------------------------------------------RH--EIGRE 310 (689)
Q Consensus 282 D~~Glpie~~~e~~l~~~~~---~~----------------------------------------------~~--~~~~~ 310 (689)
+|.|+||...+++ |.++.. .. .+ .++++
T Consensus 91 HCTGMPI~A~AdK-LkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~de 169 (1080)
T KOG0437|consen 91 HCTGMPIKASADK-LKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDE 169 (1080)
T ss_pred ccCCCccHHhHHH-HHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHH
Confidence 9999999988754 333211 00 00 01122
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHhccccccCCccccCC--hhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccC
Q psy944 311 KFI--EKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMD--PKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAIS 386 (689)
Q Consensus 311 ~~~--~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d--~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls 386 (689)
+.. .....|..++.-.-.++++++|..+||+|+|.|+| |.|..+|+|+|.+|.+.|.|..|.|...|||.+++++.
T Consensus 170 EI~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCm 249 (1080)
T KOG0437|consen 170 EIKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCM 249 (1080)
T ss_pred HhhcccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCccc
Confidence 211 12467888888888999999999999999999998 89999999999999999999999999999999999999
Q ss_pred CCceeeeeecCC---ccccccCCCCCCcccceecccc---ccCCCCceEEEeeccCccccccchhhcCCCchhhhhhhhh
Q psy944 387 DIEVDKVELTGR---TPLRVPGYANPVDFGVLASFAY---KLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDK 460 (689)
Q Consensus 387 ~~ev~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~ 460 (689)
||+....|-.++ +.+++. ++.-+.- .+.+.+++++++|.||+|+||+|+++|.|+.+|
T Consensus 250 DHDR~sGEgV~PqeytliKle---------~le~~p~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y------- 313 (1080)
T KOG0437|consen 250 DHDRASGEGVGPQEYTLIKLE---------VLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKY------- 313 (1080)
T ss_pred ccccccCCCCCcceEEEEEEE---------ecccchhhccccccceeeeeehhcCCccccCccceEEcCCccE-------
Confidence 998643332222 111111 1111111 123445899999999999999999999999653
Q ss_pred hhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhccccccc------CcccccccccCceeecCc
Q psy944 461 VELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVH------PEDERYKHLVGKLLVHPF 534 (689)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~~------~~~~~~~~l~g~~~~~P~ 534 (689)
|. |... ...++.|+|.|....++.+++... ..+..|.+|+|..+..|+
T Consensus 314 --------------------~~-----fe~~-~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPl 367 (1080)
T KOG0437|consen 314 --------------------GG-----FEAC-NETEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPL 367 (1080)
T ss_pred --------------------Ee-----EEec-CCceEEEeehHHHhhcchhhccccCCcccceeeecchhhcCCcccCcc
Confidence 33 3222 245789999999988877665322 235679999999999999
Q ss_pred CC-CceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHc-------C----------CCceeecc--------------
Q psy944 535 CE-RKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRL-------N----------LPLITVFN-------------- 582 (689)
Q Consensus 535 ~~-~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~-------~----------l~i~~~id-------------- 582 (689)
+- ..+.+++..-|..++|||+|.+||+.+||||...+++ | +||+.+-.
T Consensus 368 sv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lK 447 (1080)
T KOG0437|consen 368 SVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELK 447 (1080)
T ss_pred hhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeeccccchhhHHHHHHHHh
Confidence 84 5689999999999999999999999999999998653 3 24443321
Q ss_pred ----------------------CCcccccCCCCCCCCchhhhHHHHHHHhhccccccCcee-------------eeEEee
Q psy944 583 ----------------------EEGVIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIK-------------VDKEIE 627 (689)
Q Consensus 583 ----------------------~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~-------------~~~~i~ 627 (689)
.+|+|. .|.|.|.+|.+++++|...|+ +.|.+. +.+||+
T Consensus 448 iqs~~dk~klaeaK~~~y~e~fy~g~ml--ig~y~G~KVe~~K~~i~~~li----~~g~a~~y~EPEkqVmSRSGdeCiV 521 (1080)
T KOG0437|consen 448 IQSPNDKKKLAEAKKLAYLEGFYEGTML--IGKYKGEKVEDAKPKIKTDLI----ETGDALKYNEPEKQVMSRSGDECIV 521 (1080)
T ss_pred ccCchhHHHHHHhhHHHHHHhhhcceEE--EeccccccHHhhhhHHHHHHH----hcccceeecCcchhhhccCCCceEE
Confidence 167777 789999999999999999999 899654 444999
Q ss_pred eeecccccccCcHHHHHHHHH-hcCCCeeecccccchhhhhhhchHHHhhhHHH
Q psy944 628 RLNKKEEYLKQVIAKLKDQAA-AEDYATKVPENVRTQNSEKLSEAEGELSRLPA 680 (689)
Q Consensus 628 ~l~~~QWFi~~~~~~~k~~~~-~~~~i~~~P~~~~~~~~~~~~~~~~~~~~~~~ 680 (689)
. |++||||+|+.++||..+. +++.++.+- .++...||++|+||..
T Consensus 522 A-L~DQWYldYgE~eWKk~a~~cLe~l~~f~-------dEtR~~fE~tLdWL~~ 567 (1080)
T KOG0437|consen 522 A-LCDQWYLDYGEAEWKKQAKECLENLNTFS-------DETRNGFEDTLDWLGQ 567 (1080)
T ss_pred E-eccchhhhcCcHHHHHHHHHHHhhhhccC-------HHHHHHHHHHHHHHHh
Confidence 8 8999999999999999886 676665444 4445588999999964
No 29
>KOG0435|consensus
Probab=100.00 E-value=1.3e-53 Score=457.85 Aligned_cols=375 Identities=25% Similarity=0.327 Sum_probs=302.0
Q ss_pred hHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccC
Q psy944 207 ALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGI 286 (689)
Q Consensus 207 ~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Gl 286 (689)
....+|..|+++|.+...+.. ..+.+++| +|.+++|||+|.|||||.|.|||.|++|||+||+||+|+++||||.+||
T Consensus 31 ~~~~iEk~W~~~~~~~~~~~~-~~d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGL 108 (876)
T KOG0435|consen 31 AIAMIEKHWKQYLKDGFPFSK-DSDKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGL 108 (876)
T ss_pred hHHHHHHHHHHHHhcCCcccc-ccccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCC
Confidence 445788999999999875554 24456666 7889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcC
Q psy944 287 ATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAG 366 (689)
Q Consensus 287 pie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kG 366 (689)
|.|.+|-+ .|..+ ..|...+++.|++||++||+++||+|+..|++|+|+++.||+|.+|+++|
T Consensus 109 PAENAAie-----rgv~P------------~sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~G 171 (876)
T KOG0435|consen 109 PAENAAIE-----RGVHP------------ASWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKG 171 (876)
T ss_pred chhhHHHh-----cCCCc------------hhhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhh
Confidence 98876632 35444 37899999999999999999999999999999999999999999999999
Q ss_pred CeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCCCceEEEeeccCccccccchhh
Q psy944 367 DIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVA 446 (689)
Q Consensus 367 liy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Tt~P~Tl~~n~~~~ 446 (689)
|+|+.+.+|+|||.++|+|++++|+......++ ..+++...+.+++.+..
T Consensus 172 LAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRS-------GA~VEkK~LrQWfiktt----------------------- 221 (876)
T KOG0435|consen 172 LAYQAEAEVNWDPVDKTVLANEQVDADGCSWRS-------GAKVEKKKLRQWFIKTT----------------------- 221 (876)
T ss_pred hhhccccccccCcccceeecchhhcccCccccc-------cchhhHHHHHHHHhhhh-----------------------
Confidence 999999999999999999999999765444332 22344444555443322
Q ss_pred cCCCchhhhhhhhhhhccCCCCCCCCCC-CCCcccceeeeEeEEeecC---CceEEEEeccHHHHhhcccccccCccc--
Q psy944 447 VHPEDERYKHLVDKVELTGRTPLRVPGY-ANPVDFGVLASFAYKLEDG---SGEIVVATTRLETLFADVAVAVHPEDE-- 520 (689)
Q Consensus 447 v~p~~~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~y~~~~~---~~~~~i~~~~~e~~~~~~~~~~~~~~~-- 520 (689)
.|.+.+.++++..-+||+ ++.+ +|||+-.....+.|.+-++ ++.+.+.|++||++++.+++++.|++.
T Consensus 222 -----aYAk~L~d~L~~L~~W~~-vk~mQrnWIG~~~G~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~ 295 (876)
T KOG0435|consen 222 -----AYAKRLLDGLETLPEWPE-VKDMQRNWIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLL 295 (876)
T ss_pred -----HHHHHHHHHHHhhhhhhh-HHHHHHhhcccccceEEEEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhh
Confidence 366667777765556666 7777 7999988888888887643 489999999999999988888777652
Q ss_pred ----------ccccc------cCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeec---
Q psy944 521 ----------RYKHL------VGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVF--- 581 (689)
Q Consensus 521 ----------~~~~l------~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~i--- 581 (689)
+.+.| .+..+.||++|+.+||+.++||...+|||+||++|+|+.+|++++++.++..+.++
T Consensus 296 ~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~ 375 (876)
T KOG0435|consen 296 DKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVI 375 (876)
T ss_pred hhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEEEEeee
Confidence 11222 33468899999999999999999999999999999999999999999776655443
Q ss_pred -cCCcccccCCCCCCC-CchhhhHHHHHHHhhccccccCceeee---EEeeeeecccccccCcHH
Q psy944 582 -NEEGVIIGDYGEFTG-MKRFDARTRVTELISLSISSQGLIKVD---KEIERLNKKEEYLKQVIA 641 (689)
Q Consensus 582 -d~~G~~~~~~~~~~G-~~v~~a~~~i~~~L~~~~~~~g~~~~~---~~i~~l~~~QWFi~~~~~ 641 (689)
+..|+.+. ...++| +...+|+.+|.+.+. ++|+.... +....|+++|-|..+.++
T Consensus 376 f~~~~K~~~-~~~~tn~~~~q~a~~~l~~~~~----~~g~g~~~vs~kLkDWLiSRQRyWGTPIP 435 (876)
T KOG0435|consen 376 FTNFGKKNE-QKAFTNLDIRQNAALKLFQFAE----RKGVGGYVVSYKLKDWLISRQRYWGTPIP 435 (876)
T ss_pred ecchhhhhc-cccccchhHHHHHHHHHHHHHH----hcCCCcceecchhhhhhhhhhhccCCCcc
Confidence 45666653 456788 555679999999998 77765432 245677899999998655
No 30
>KOG0432|consensus
Probab=100.00 E-value=8.5e-44 Score=393.17 Aligned_cols=257 Identities=55% Similarity=0.982 Sum_probs=218.2
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAE 80 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (689)
|+.+|++++++|++.|+|+..++++.+|+++++|||||||.+||++||+|++..+++ -...+.|+.+.+.++|.
T Consensus 423 ma~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~------~~ee~~WvvarseeeA~ 496 (995)
T KOG0432|consen 423 MAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDG------RAEEDYWVVARSEEEAR 496 (995)
T ss_pred HHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccC------CCccceeEEeCCHHHHH
Confidence 578999999999999999999999999999999999999999999999999876443 12236799999999999
Q ss_pred HHhhhccccccCCccccccccccccccccCCcceeeecCCccc-------------------------------cccccC
Q psy944 81 QKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQ-------------------------------RLSANG 129 (689)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~-------------------------------~l~~~~ 129 (689)
..+...++ +.....+.+++|||||||+|+++||+++|||... .|.|.-
T Consensus 497 ekaa~k~g-~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~sllETG~DILfFWVaRMvmLg~kLtG~l 575 (995)
T KOG0432|consen 497 EKAAEKFG-PGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETGHDILFFWVARMVMLGLKLTGEL 575 (995)
T ss_pred HHHHHHhC-CcccceeecCccHHHhhhhcccccchhcCCccccccHHhcCCchhhhcCchHHHHHHHHHHHhhhhhcCCC
Confidence 99999888 6677889999999999999999999999999842 134555
Q ss_pred cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCchhHHHHHhhhccccCCCCCCCCCCCCchHH
Q psy944 130 IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAERQRAADGQKRDYPQGIPECGTDALR 209 (689)
Q Consensus 130 ~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~~~~~~~~a~~~~~k~l~~~l~~~~~~~~~ 209 (689)
+|++|++||++.|.+|||||||+||||+|.++|++...+.|.--|+ +|++|..|...++.+++++++++||+||++.+|
T Consensus 576 PF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~-~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALR 654 (995)
T KOG0432|consen 576 PFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLL-SGNLDPREVEKAKKGQKKDFPNGIPECGTDALR 654 (995)
T ss_pred CchheeechhhccccccccchhhccccCHHHHhccccHHHHHHHHH-cCCCCHHHHHHHHHHHHhhcCCCCcccchHHHH
Confidence 7999999999999999999999999999999999999999998888 699999999999999999999999999999999
Q ss_pred HHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccC
Q psy944 210 FALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGI 286 (689)
Q Consensus 210 ~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Gl 286 (689)
|....+...-++.+ ....-+.|..|+++-+..+.+=++.| .|.+..-..-.+..|.
T Consensus 655 FaL~s~~~~~~dIn-----------------LDv~rv~g~r~FcNKlWNa~rF~l~~----lg~~~~p~~~~~~~~~ 710 (995)
T KOG0432|consen 655 FALCSYTTQGRDIN-----------------LDVLRVEGYRHFCNKLWNATRFALQR----LGENFVPSPTEDLSGN 710 (995)
T ss_pred HHHHHccccCcccc-----------------ccHHHHhhHHHHHHHHHHHHHHHHHh----cccCCCCCcccccCCC
Confidence 99988766544432 34456788999998776665444433 6665444444444444
No 31
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-38 Score=357.56 Aligned_cols=162 Identities=47% Similarity=0.855 Sum_probs=132.5
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAE 80 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (689)
|++.+++++++|.++|+|+.+++++.+|+++++|||||||++||||||+|||..|+.. ++.. ..++..
T Consensus 365 la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v-----------~v~~-~~~~~~ 432 (877)
T COG0525 365 LAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNV-----------VVAE-EEPEDP 432 (877)
T ss_pred hHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCCCcE-----------EeCC-ccccch
Confidence 5788999999999999999999999999999999999999999999999999755432 1111 111111
Q ss_pred HHhhhccccccCCccccccccccccccccCCcceeeecCCccc-----------c--------------------ccccC
Q psy944 81 QKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQ-----------R--------------------LSANG 129 (689)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~-----------~--------------------l~~~~ 129 (689)
.. ...++ ...+++++|||||||+|+++||++++||... + +.+.-
T Consensus 433 ~~---~~~~~--~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~~~~~~~~ 507 (877)
T COG0525 433 AA---AEKCP--KEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEV 507 (877)
T ss_pred hh---hccCc--hhcccCCcchhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhHHHHHHHHHHHHHhcCCC
Confidence 11 01111 1468899999999999999999999999832 1 12334
Q ss_pred cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 130 IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 130 ~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
||+.|++||+++|.+|+|||||+||||+|.+++++||+|+|||+|.+.+.
T Consensus 508 PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~ 557 (877)
T COG0525 508 PFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLAS 557 (877)
T ss_pred CccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccC
Confidence 68999999999999999999999999999999999999999999998744
No 32
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-37 Score=352.53 Aligned_cols=167 Identities=32% Similarity=0.578 Sum_probs=133.3
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCC-CCcccc----------cce
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKK-PKNVTE----------YEL 69 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~-~~~~~~----------~~~ 69 (689)
++++++++++ +++|+|++.++||.+||++++||||||||+||+|||+|+|+.++.... .+.+.. .+.
T Consensus 425 ~r~~~l~~i~--~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~ 502 (933)
T COG0060 425 LRDKMLKEIN--KVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDD 502 (933)
T ss_pred HHHHHHHHHh--cceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchh
Confidence 4789999999 899999999999999999999999999999999999999987654332 111100 122
Q ss_pred eecCCChHHHHHHhhhccc--cccCCccccccccccccccccCCcceeeec------CCc---ccccc------------
Q psy944 70 WVSGRSKEEAEQKAISKFN--VTQADISLRQDEDVLDTWFSSGLFPFSVFG------WPD---KQRLS------------ 126 (689)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~------wp~---~~~l~------------ 126 (689)
|+.. .++..- ++.++..++|.+||||+|||||++|.++++ ||. +.-+.
T Consensus 503 w~~~---------~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~~~~~~~~~~~~aD~~lEGsDQ~RGWF~Ss 573 (933)
T COG0060 503 WHRP---------DIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRGWFYSS 573 (933)
T ss_pred hhcc---------chHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccCCcccccCccccCcEEEEeccccchhHHHH
Confidence 2221 111111 124566999999999999999999998876 666 44332
Q ss_pred --------ccCcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcC
Q psy944 127 --------ANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDS 178 (689)
Q Consensus 127 --------~~~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~ 178 (689)
+..+||+|++|||++|.+|+|||||+||+|+|.+++++||+|+||+|++++.
T Consensus 574 l~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd 633 (933)
T COG0060 574 LLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSD 633 (933)
T ss_pred HHHHHHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecC
Confidence 3336899999999999999999999999999999999999999999999775
No 33
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.6e-34 Score=314.34 Aligned_cols=155 Identities=65% Similarity=1.070 Sum_probs=147.3
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHH
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIE 314 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~ 314 (689)
++|+|++|||||||.|||||+++++++|+++||+||+|++|++++|||+||+||+..+++++... +.++..+++++|++
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~-~~~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIE-GKTRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhccc-ccchhcCCHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999998876432 33556789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCce
Q psy944 315 KVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEV 390 (689)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev 390 (689)
.|++|++++.+.+++++++||+++||++++.|++|.|.+.++++|.+|+++|+||++.++|+|||.|+|+||++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev 155 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
No 34
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=7.2e-35 Score=349.29 Aligned_cols=214 Identities=55% Similarity=0.987 Sum_probs=165.0
Q ss_pred CHHHHHHHH---hcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChH
Q psy944 1 MAEKAVQAV---KTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKE 77 (689)
Q Consensus 1 ~~~~~~e~i---~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (689)
|+++|++++ ++++++|+|+++++++.+||+|++||||||||+||||||+|||..++... ...-...+.|+......
T Consensus 478 l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~~-~~~g~~~~~~~~~~~~~ 556 (1066)
T PLN02381 478 MAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQL-KELGSYNDHWVVARNES 556 (1066)
T ss_pred HHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhhc-ccCCcccceEEEccchH
Confidence 468899999 66799999999999999999999999999999999999999986322110 00001113455443333
Q ss_pred HHHHHhhhccccccCCccccccccccccccccCCcceeeecCCcc-----------cccc--------------------
Q psy944 78 EAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDK-----------QRLS-------------------- 126 (689)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~-----------~~l~-------------------- 126 (689)
++....+..+ +.....+++++|||||||+|+++||++++||.+ .++.
T Consensus 557 ~~~~~~~~~~--~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~ 634 (1066)
T PLN02381 557 DALLEASQKF--PGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLG 634 (1066)
T ss_pred hhcchhhccc--CCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccCCCeeeeecchhhhhHHHHHHHHHHHhC
Confidence 3222111111 111225899999999999999999999987753 2222
Q ss_pred ccCcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCchhHHHHHhhhccccCCCCCCCCCCCCc
Q psy944 127 ANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAERQRAADGQKRDYPQGIPECGTD 206 (689)
Q Consensus 127 ~~~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~~~~~~~~a~~~~~k~l~~~l~~~~~~ 206 (689)
+..||++|++||+++|.+|+|||||+||||+|.+++++++.+.|.--+. .++++..+...+.+++++++++++|++|++
T Consensus 635 ~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~-~~~~~~~e~~~~~~~~~~~~p~gi~~yGAD 713 (1066)
T PLN02381 635 GDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLE-EGNLDPKELVVAKEGQKKDFPNGIAECGTD 713 (1066)
T ss_pred CCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhh-ccccchhhhhhHhhhccccCCCCccccChH
Confidence 3335899999999999999999999999999999999999999986665 678888899999999999999999999999
Q ss_pred hHHHHHHhhhcc
Q psy944 207 ALRFALAAYMSQ 218 (689)
Q Consensus 207 ~~~~iE~~~~~~ 218 (689)
.+|+........
T Consensus 714 alR~~l~~~~~~ 725 (1066)
T PLN02381 714 ALRFALVSYTAQ 725 (1066)
T ss_pred HHHHHHHcCCcc
Confidence 998766543333
No 35
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=347.48 Aligned_cols=216 Identities=59% Similarity=1.052 Sum_probs=171.2
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAE 80 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (689)
+++++++++++++++|+|+.+++++.+||++++||||||||+||||||+|||..|+....+.. ...|+.+.+..++.
T Consensus 411 ~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 487 (995)
T PTZ00419 411 MAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETDPSD---EEPWVVARSEEEAL 487 (995)
T ss_pred HHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCccccCCC---CceEEEcCCHHHHH
Confidence 478999999989999999999999999999999999999999999999999987653321111 13566555555554
Q ss_pred HHhhhccccccCCccccccccccccccccCCcceeeecCCc-----------cccccc--------------------cC
Q psy944 81 QKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPD-----------KQRLSA--------------------NG 129 (689)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~-----------~~~l~~--------------------~~ 129 (689)
......+++++++..++|++|||||||+|+++|+++++||. +.++.| ..
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~ 567 (995)
T PTZ00419 488 EKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKL 567 (995)
T ss_pred hhhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCC
Confidence 44444445555556799999999999999999999987764 322222 22
Q ss_pred cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCchhHHHHHhhhccccCCCCCCCCCCCCchHH
Q psy944 130 IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAERQRAADGQKRDYPQGIPECGTDALR 209 (689)
Q Consensus 130 ~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~~~~~~~~a~~~~~k~l~~~l~~~~~~~~~ 209 (689)
||++|++||+++|.+|+|||||+||||+|.+++++++.+.+.--+. .++++..+...+.+++++++++++|++|++.+|
T Consensus 568 Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~-~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR 646 (995)
T PTZ00419 568 PFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLY-EGNLPEKEIKRAIELQKKEFPNGIPECGTDALR 646 (995)
T ss_pred ChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhh-ccccchhhhhhHhhhhhccCCCCCcccCcHHHH
Confidence 4699999999999999999999999999999999888888866555 567777788888888888999999998888888
Q ss_pred HHHHhhhcccc
Q psy944 210 FALAAYMSQGE 220 (689)
Q Consensus 210 ~iE~~~~~~W~ 220 (689)
+........++
T Consensus 647 ~~l~~~~~~~~ 657 (995)
T PTZ00419 647 FGLLAYTQQGR 657 (995)
T ss_pred HHHHhcCCCCC
Confidence 76655444443
No 36
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=1.3e-34 Score=347.45 Aligned_cols=176 Identities=23% Similarity=0.423 Sum_probs=127.5
Q ss_pred HHHHHHHHhcCCceEEcccc-HHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHH
Q psy944 2 AEKAVQAVKTGELKIIPDHH-TKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAE 80 (689)
Q Consensus 2 ~~~~~e~i~~~~~~~~P~~~-~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (689)
+++++++++ +++|+|+++ ++++.+||++++||||||||+||||||+|||..++.....+++..........+....+
T Consensus 539 k~~~l~~~~--~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~el~~~~~~~~~~dlh 616 (1205)
T PTZ00427 539 TNELVKNNE--TTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEELSGVKNINDLH 616 (1205)
T ss_pred HHHHHHcCC--ccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCCCCeEeccCCHHHHHHHhccccchhhc
Confidence 456677665 899999999 59999999999999999999999999999997654332222221110000000000001
Q ss_pred HHhhhcc--ccccC--CccccccccccccccccCCcceeeecCCcc-------------ccc------------------
Q psy944 81 QKAISKF--NVTQA--DISLRQDEDVLDTWFSSGLFPFSVFGWPDK-------------QRL------------------ 125 (689)
Q Consensus 81 ~~~~~~~--~~~~~--~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~-------------~~l------------------ 125 (689)
...++.. .++++ ...++|++|||||||+||++|+++++||.. ..+
T Consensus 617 ~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf~s~l~~s~ 696 (1205)
T PTZ00427 617 RHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVIST 696 (1205)
T ss_pred ccccChhhccCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEEEecchhccHHHHHHHHHH
Confidence 1111111 11111 125999999999999999999999988752 111
Q ss_pred --cccCcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 126 --SANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 126 --~~~~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
.+..||++|++||+++|.+|+|||||+||+|+|.+++++||+|+|||||+++++
T Consensus 697 ~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~~ 752 (1205)
T PTZ00427 697 LLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVA 752 (1205)
T ss_pred HhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcCC
Confidence 233357999999999999999999999999999999999999999999998654
No 37
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.5e-34 Score=340.18 Aligned_cols=164 Identities=34% Similarity=0.554 Sum_probs=131.4
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCccc----------cccee
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVT----------EYELW 70 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~----------~~~~~ 70 (689)
++++++++++ +++|+|+++++++.+||++++||||||||+||+|||+|||..++......... ..+.|
T Consensus 422 ~k~~~l~~~~--~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W 499 (912)
T PRK05743 422 LREQALKAIE--KVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAW 499 (912)
T ss_pred HHHHHHHHHc--ccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccc
Confidence 4788999998 79999999999999999999999999999999999999998765332111100 11233
Q ss_pred ecCCChHHHHHHhhhccccccCCccccccccccccccccCCcceeee------cCCccccccccC---------------
Q psy944 71 VSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVF------GWPDKQRLSANG--------------- 129 (689)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~------~wp~~~~l~~~~--------------- 129 (689)
++.... + -+++++..+.+++||||||||||++|++++ +||++.++.|.+
T Consensus 500 ~~~~~~-~---------~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~~~~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~ 569 (912)
T PRK05743 500 FELDAK-E---------LLPDEADEYEKETDILDVWFDSGSSHAAVLEQRPELGYPADLYLEGSDQHRGWFQSSLLTSVA 569 (912)
T ss_pred cccCHH-H---------hcCCcccCEEECCchhhhhhhhCCCHHHHhcCccccCCCceEEEecccccchHHHHHHHHHHH
Confidence 321100 0 022234579999999999999999998764 689887655444
Q ss_pred -----cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhh
Q psy944 130 -----IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 130 -----~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
+|++|++||+++|.+|+|||||+||+|+|.+++++||+|+||||+++
T Consensus 570 ~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~ 621 (912)
T PRK05743 570 TRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVAS 621 (912)
T ss_pred hcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999996
No 38
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=6.3e-34 Score=343.00 Aligned_cols=175 Identities=26% Similarity=0.460 Sum_probs=128.3
Q ss_pred CHHHHHHHHhcCCceEEcccc-HHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHH-TKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEA 79 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~-~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (689)
++++++++++ +++|+|+++ ++++.+||++++||||||||+||||||+|||..+.......++....... +....+.
T Consensus 434 ~k~~~l~~~~--~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s~~el~~~~-~~~~~dl 510 (1159)
T PLN02882 434 IKDRLLENNK--QTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAELEKLS-GVKVTDL 510 (1159)
T ss_pred HHHHHHHhhC--CcEEECCcchhhHHHHHHhcCcccceeeccccCCccceEEeCCCCeEEecCcHHHHHHHh-CCchhhc
Confidence 4788888877 899999999 58999999999999999999999999999996543221111111000000 0000001
Q ss_pred HHHhhhcccccc-C---CccccccccccccccccCCcceeeecCCcc------------ccc------------------
Q psy944 80 EQKAISKFNVTQ-A---DISLRQDEDVLDTWFSSGLFPFSVFGWPDK------------QRL------------------ 125 (689)
Q Consensus 80 ~~~~~~~~~~~~-~---~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~------------~~l------------------ 125 (689)
+...++.+.+++ + ...++|++||||||||||++|+++++||.. ..+
T Consensus 511 h~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~~~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~ 590 (1159)
T PLN02882 511 HRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENKELFEKNFPADFVAEGLDQTRGWFYTLMVLST 590 (1159)
T ss_pred cccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccChhHhhccCCceEEEEecchhhhHHHHHHHHHH
Confidence 111122221221 1 136999999999999999999999988742 111
Q ss_pred --cccCcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcC
Q psy944 126 --SANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDS 178 (689)
Q Consensus 126 --~~~~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~ 178 (689)
.+..+|++|++||++++.+|+|||||+||+|+|.+++++||+|+|||||+++.
T Consensus 591 ~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s~ 645 (1159)
T PLN02882 591 ALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINSP 645 (1159)
T ss_pred HhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhCC
Confidence 13456899999999999999999999999999999999999999999999654
No 39
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.5e-34 Score=338.55 Aligned_cols=167 Identities=28% Similarity=0.470 Sum_probs=129.9
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCccc---------ccceee
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVT---------EYELWV 71 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~---------~~~~~~ 71 (689)
++++|+++++ +++|+|+++++++.+||++++||||||||+||||||+|||..+.+...++.+. ..+.|+
T Consensus 458 ~k~~al~~i~--~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~ 535 (961)
T PRK13804 458 LRSRALDAID--KTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAEDGEILMDEEVNARIADAFEEEGADAWF 535 (961)
T ss_pred HHHHHHHHHh--ccEEECHHHHHHHHHHHhcCccceeeeeccCCceeeEEEcCCCCEeccHHHHHHHHHHHHhcCCcccc
Confidence 4688999998 89999999999999999999999999999999999999996433222111111 112333
Q ss_pred cCCChHHHHHHhhhccccc-cCCccccccccccccccccCCcceeee------cCCccccccccC---------------
Q psy944 72 SGRSKEEAEQKAISKFNVT-QADISLRQDEDVLDTWFSSGLFPFSVF------GWPDKQRLSANG--------------- 129 (689)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dv~D~Wf~S~~~~~~~~------~wp~~~~l~~~~--------------- 129 (689)
.....+ . +... .++..++|++||||||||||++++..+ .||++.++.|.+
T Consensus 536 ~~~~~~-----~---~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~~~~~~~~~PaD~~~eG~Di~rgWF~s~ll~s~~ 607 (961)
T PRK13804 536 AEGAKE-----R---FLGGFHPNGEFTKVTDILDVWFDSGSTHAFVLEDRPDLKWPADLYLEGSDQHRGWFNSSLLESCG 607 (961)
T ss_pred ccCHHH-----h---cCcccCcccceEecCcceeeeecCCCCccccccCCcccCCCceEEEEEcccccHHHHHHHHHHHH
Confidence 211110 0 1100 124579999999999999999987653 688886554433
Q ss_pred -----cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc
Q psy944 130 -----IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 130 -----~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
||++|++||+++|.+|+|||||+||+|+|.+++++||+|++|||+++.
T Consensus 608 ~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~lls~ 660 (961)
T PRK13804 608 TRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVASV 660 (961)
T ss_pred hcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHHhC
Confidence 579999999999999999999999999999999999999999999964
No 40
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.98 E-value=4.8e-34 Score=327.49 Aligned_cols=173 Identities=38% Similarity=0.685 Sum_probs=121.3
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAE 80 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (689)
++++++++++ +++|+|++.++++.+||++++||||||||+||+|||+|+|+.+.....+...... ..........
T Consensus 385 ~k~~~l~~~~--~i~~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 459 (601)
T PF00133_consen 385 WKKKALEALE--KIKFYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCGEVLVIESTIEL---IADRVEKEGI 459 (601)
T ss_dssp HHHHHHHHHH--TSEESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETTSEEEECCGGHHHH---HHHHSTHHHH
T ss_pred hHHHHHhhcc--cceEEcccchhhhhhhccccccchhhccCCCCccceeeecccCcccccccccccc---cccccccccc
Confidence 4688999999 9999999999999999999999999999999999999999876543322211100 0000000000
Q ss_pred -----HHhhhccccccCCccccccccccccccccCCcceeeecCCc------------cccccc----------------
Q psy944 81 -----QKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPD------------KQRLSA---------------- 127 (689)
Q Consensus 81 -----~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~------------~~~l~~---------------- 127 (689)
....+. ++.++..+.+++||||+||+|+++|++++.||. +.++.|
T Consensus 460 ~~~~~~~~~~~--~~~~~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~~W~~~~l~~~~ 537 (601)
T PF00133_consen 460 DAWLHKPAEDK--LPCCGGELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIRGWFQSSLFLSV 537 (601)
T ss_dssp SCTSSHHHHHH--HTTTSSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTTTHHHHHHHHHH
T ss_pred ccccccccccc--ccccccceEEeeeeccccccccCCcccccccccccchhccccCCcccccCCccchhhHHHHhHhhcc
Confidence 000011 134567899999999999999999999987654 433333
Q ss_pred ----cCcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 128 ----NGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 128 ----~~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
..+|++|++||+++|.+|+|||||+||+|+|.+++++||+|++|++++.+++.
T Consensus 538 ~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~~~~ 594 (601)
T PF00133_consen 538 ALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIEKYGADALRLWLASSADP 594 (601)
T ss_dssp HHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHHS-T
T ss_pred ccccCCchheeeecccccccceeecccCCCcccCHHHHHHHhCcHHHHHHHHhcCCc
Confidence 33589999999999999999999999999999999999999999999966553
No 41
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.97 E-value=2.3e-32 Score=326.16 Aligned_cols=169 Identities=28% Similarity=0.453 Sum_probs=130.5
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCC-CCCccc---------cccee
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAK-KPKNVT---------EYELW 70 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~-~~~~~~---------~~~~~ 70 (689)
++++++++++ +++|+|+++++++.+||++++||||||||+||||||+|||..++... ..+.+. ..+.|
T Consensus 437 ~k~~al~~~~--~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w 514 (974)
T PLN02843 437 FRQAALDAID--KVKWIPAQGENRIRAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAW 514 (974)
T ss_pred HHHHHHHHHh--ccEEEChHHHHHHHHHHhcCcceeeeeccccccEEEEEEEcCCCCEeechhhHHHHHHHHHhhCCccc
Confidence 4789999998 79999999999999999999999999999999999999997654221 111111 11334
Q ss_pred ecCCChHHHHHHhhhccccccCCccccccccccccccccCCcceee------ecCCccccccccC---------------
Q psy944 71 VSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSV------FGWPDKQRLSANG--------------- 129 (689)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~------~~wp~~~~l~~~~--------------- 129 (689)
+... .++.... .+ ..+...+.+++||||||||||+++... ..||++.++.|.+
T Consensus 515 ~~~~-~~~l~p~---~~--~~~~~~~~k~~DvlDvWFdSg~~~~~~~~~~~~~~~PaDl~~eG~Di~rgWf~s~l~~~~~ 588 (974)
T PLN02843 515 WYMD-VEDLLPE---KY--RDKASDYEKGTDTMDVWFDSGSSWAGVLGSREGLSYPADLYLEGSDQHRGWFQSSLLTSVA 588 (974)
T ss_pred ccCC-HHHhCcc---cc--cCchhhhEecccccccchhcCCChHHHhccccccCCCceeeeeeccccchHHHHHHHHHHH
Confidence 3321 1111111 11 112346899999999999999988664 3689887655544
Q ss_pred -----cCceEEEcceeeCCCCceeeeccCCccCchhhhh---------cCChhhHHHHHhhc
Q psy944 130 -----IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVK---------GISLAGLQGRLLQD 177 (689)
Q Consensus 130 -----~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~---------~~~~d~~r~~l~~~ 177 (689)
+|++|++||+++|.+|+|||||+||+|+|.++++ +||+|+||||+++.
T Consensus 589 ~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~ 650 (974)
T PLN02843 589 TKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVASV 650 (974)
T ss_pred hcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHHHHHhc
Confidence 4799999999999999999999999999999999 79999999999953
No 42
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=99.97 E-value=2.7e-32 Score=327.86 Aligned_cols=158 Identities=45% Similarity=0.856 Sum_probs=127.6
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAE 80 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (689)
|++++++++++++++|+|+++++++.+||++++||||||||+||||||+|||.++. . .+....
T Consensus 382 ~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~~~-~-----------~v~~~~----- 444 (1052)
T PRK14900 382 LARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPDGH-V-----------TVARET----- 444 (1052)
T ss_pred HHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCCCc-E-----------Eecccc-----
Confidence 47889999998889999999999999999999999999999999999999986321 1 111100
Q ss_pred HHhhhccccccC-CccccccccccccccccCCcceeeecCCc-----------cccccccC-------------------
Q psy944 81 QKAISKFNVTQA-DISLRQDEDVLDTWFSSGLFPFSVFGWPD-----------KQRLSANG------------------- 129 (689)
Q Consensus 81 ~~~~~~~~~~~~-~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~-----------~~~l~~~~------------------- 129 (689)
.. .|+.| +..+++++|||||||||+++|+.+++||. +.++.|.+
T Consensus 445 ~~-----~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~ 519 (1052)
T PRK14900 445 PE-----ACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGE 519 (1052)
T ss_pred cc-----cccccCccceecCCceEEEEEcCChHHHHHHcCCCchHHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCC
Confidence 01 11222 23588999999999999999998876654 33222222
Q ss_pred -cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 130 -IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 130 -~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
+|++|++|||++|.+|+|||||+||+|+|.+++++||+|++||||++.++.
T Consensus 520 ~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~ 571 (1052)
T PRK14900 520 VPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQ 571 (1052)
T ss_pred CccceeEecccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCC
Confidence 469999999999999999999999999999999999999999999987654
No 43
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=2.7e-32 Score=327.38 Aligned_cols=177 Identities=27% Similarity=0.485 Sum_probs=130.5
Q ss_pred CHHHHHHHHhcCCceEEccccHH-HHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecC-CChHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTK-TWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSG-RSKEE 78 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~-~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 78 (689)
++++++++++ +++|+|++.++ ++.+||++++||||||||+||||||+|||..++......+.......... .....
T Consensus 413 ~k~~ll~~~~--~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~ 490 (975)
T PRK06039 413 IKDRMLELNQ--KINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPID 490 (975)
T ss_pred HHHHHHHhhC--CeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhh
Confidence 4788999988 69999999999 99999999999999999999999999999865422111111100000000 00000
Q ss_pred HHHHhhh--ccccccCCccccccccccccccccCCcceeeecCCcc------------ccccc-----------------
Q psy944 79 AEQKAIS--KFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDK------------QRLSA----------------- 127 (689)
Q Consensus 79 ~~~~~~~--~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~------------~~l~~----------------- 127 (689)
.+...++ ...|+ ++..++|++|||||||+|+++|+++++||.. .++.|
T Consensus 491 l~~~~~d~~~~~~~-~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~ 569 (975)
T PRK06039 491 LHRPYVDEVTLPCP-DGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTA 569 (975)
T ss_pred hcccccccccccCC-CCcceEeccccccceeecCCccHHHhCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHH
Confidence 1111111 12232 2557999999999999999999988876653 22122
Q ss_pred ---cCcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 128 ---NGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 128 ---~~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
..+|++|++||++++.+|+|||||+||+|+|.+++++||+|++||||++++++
T Consensus 570 ~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~ 625 (975)
T PRK06039 570 LFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAP 625 (975)
T ss_pred hcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCC
Confidence 34689999999999999999999999999999999999999999999988763
No 44
>PLN02943 aminoacyl-tRNA ligase
Probab=99.97 E-value=1e-31 Score=320.74 Aligned_cols=164 Identities=52% Similarity=0.935 Sum_probs=129.6
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEe--CCCCCCCCCcccccceeecCCChHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVS--FNDPAKKPKNVTEYELWVSGRSKEE 78 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (689)
+++++++++++++++|+|+.+++++.+||++++||||||||+||||||+|||. .|+ ..++......+
T Consensus 417 l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~-----------~~~~v~~~~~~ 485 (958)
T PLN02943 417 LAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCE-----------EDYIVARSAEE 485 (958)
T ss_pred HHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCC-----------ceEEecCcHHH
Confidence 47889999998899999999999999999999999999999999999999984 221 11222233333
Q ss_pred HHHHhhhccccccCCccccccccccccccccCCcceeeecCCc------------cccccccC-----------------
Q psy944 79 AEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPD------------KQRLSANG----------------- 129 (689)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~------------~~~l~~~~----------------- 129 (689)
+....+..++. ...+.+++|||||||||+++|+++++||. +.+..|.+
T Consensus 486 ~~~~~~~~~g~---~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~ 562 (958)
T PLN02943 486 ALEKAREKYGK---DVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFT 562 (958)
T ss_pred HHHHhhhhcCC---chheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhc
Confidence 33222222221 22588999999999999999999988765 22222222
Q ss_pred ---cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcC
Q psy944 130 ---IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDS 178 (689)
Q Consensus 130 ---~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~ 178 (689)
+|++|++||+++|.+|+|||||+||+|+|.+++++||+|++||||++..
T Consensus 563 ~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~ 614 (958)
T PLN02943 563 GTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGT 614 (958)
T ss_pred CCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCC
Confidence 4689999999999999999999999999999999999999999999653
No 45
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=6.9e-32 Score=321.77 Aligned_cols=155 Identities=48% Similarity=0.890 Sum_probs=127.0
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAE 80 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (689)
|++++++++++++++|+|+.+++++.+||++++||||||||+||||||+|||..+. ..+|.+.+ .+
T Consensus 367 ~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~----------~~v~~~~~---~~- 432 (874)
T PRK05729 367 LAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDEDGE----------VYVGREEP---EA- 432 (874)
T ss_pred HHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCCCc----------EEeCCccc---cc-
Confidence 47889999998899999999999999999999999999999999999999986311 11121110 00
Q ss_pred HHhhhccccccCCccccccccccccccccCCcceeeecCCc-----------cccccccC--------------------
Q psy944 81 QKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPD-----------KQRLSANG-------------------- 129 (689)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~-----------~~~l~~~~-------------------- 129 (689)
.....+++++|||||||+|+++|+++++||. +.++.|.+
T Consensus 433 ----------~~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~ 502 (874)
T PRK05729 433 ----------REKALLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQV 502 (874)
T ss_pred ----------ccccCeEeCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCC
Confidence 0012589999999999999999999987764 22233322
Q ss_pred cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 130 IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 130 ~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
||++|++||+++|.+|+|||||+||+|+|.+++++||+|++||+|++.++
T Consensus 503 Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~ 552 (874)
T PRK05729 503 PFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALAS 552 (874)
T ss_pred chhheEEeeeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCCC
Confidence 45999999999999999999999999999999999999999999998754
No 46
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.97 E-value=1.7e-31 Score=318.59 Aligned_cols=163 Identities=45% Similarity=0.835 Sum_probs=130.8
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAE 80 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (689)
+++++++++++++++|+|+++++++.+||++++||||||||+||||||+|||..++. .++.+. ..++.
T Consensus 365 ~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~-----------~~v~~~-~~~~~ 432 (861)
T TIGR00422 365 LADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGE-----------VYVAKE-EPLPD 432 (861)
T ss_pred HHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCCc-----------EEeccc-hHHhh
Confidence 478899999988899999999999999999999999999999999999999975432 223221 11111
Q ss_pred HHhhhccccccCCccccccccccccccccCCcceeeecCCc-----------ccccccc--------------------C
Q psy944 81 QKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPD-----------KQRLSAN--------------------G 129 (689)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~-----------~~~l~~~--------------------~ 129 (689)
... .++ .+..+.|++|||||||||+++|+++++||. +.+..|. .
T Consensus 433 ~~~--~~~---~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~ 507 (861)
T TIGR00422 433 DKT--NTG---PSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQV 507 (861)
T ss_pred hhh--ccC---CcccEEECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcCCC
Confidence 110 111 124699999999999999999999988764 2222222 2
Q ss_pred cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 130 IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 130 ~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
+|++|++||+++|.+|+|||||+||+|+|.+++++||+|++||+|++.+++
T Consensus 508 Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~ 558 (861)
T TIGR00422 508 PFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTP 558 (861)
T ss_pred chheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCC
Confidence 469999999999999999999999999999999999999999999987663
No 47
>KOG0433|consensus
Probab=99.97 E-value=1.1e-31 Score=291.69 Aligned_cols=173 Identities=28% Similarity=0.471 Sum_probs=137.5
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCc----------cccccee
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKN----------VTEYELW 70 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~----------~~~~~~~ 70 (689)
++..|.++|+ +++|+|....+++..++..+++|||||||.||+|||++|....+....... ....+.|
T Consensus 437 ~k~~A~~al~--~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~W 514 (937)
T KOG0433|consen 437 IKKRASMALD--DVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVW 514 (937)
T ss_pred hhhHHHHHHh--hceeCCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcce
Confidence 3678999999 899999999999999999999999999999999999999886543221110 1124778
Q ss_pred ecCCChHHHHHHhhhccccccCCccccccccccccccccCCcceeee-------------------cCCcccccc-----
Q psy944 71 VSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVF-------------------GWPDKQRLS----- 126 (689)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~-------------------~wp~~~~l~----- 126 (689)
+.....+.......+..+ ..+..+.+++|+||+|||||.+|..+. ||.+++.|.
T Consensus 515 w~~~~eellpe~~~~e~~--~~a~ey~kgtDimDVWFDSGssWs~v~~~~~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q 592 (937)
T KOG0433|consen 515 WEIDVEELLPEEEVREIP--DIASEYKKGTDIMDVWFDSGSSWSAVLDNEREHVADVYLEGVDQFRGWFQSSLLTSVAVQ 592 (937)
T ss_pred EeCChhHhCcHhhhcccc--hhHHHhccCCceeeeEecCCCcceeecCCCCCcceeeEEecchhcchHHHHHHHHHHHHh
Confidence 865544332222332222 234579999999999999999988876 466655443
Q ss_pred ccCcCceEEEcceeeCCCCceeeeccCCccCchhhhhc------CChhhHHHHHhhc
Q psy944 127 ANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKG------ISLAGLQGRLLQD 177 (689)
Q Consensus 127 ~~~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~------~~~d~~r~~l~~~ 177 (689)
+..|+++|++|||++|++|.|||||.||||+|+.++++ ||+|.||||+..+
T Consensus 593 ~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA~~ 649 (937)
T KOG0433|consen 593 NKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGS 649 (937)
T ss_pred ccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeeeecc
Confidence 34579999999999999999999999999999999999 9999999999955
No 48
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.97 E-value=2.3e-31 Score=317.83 Aligned_cols=169 Identities=31% Similarity=0.595 Sum_probs=128.8
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccc---------cceee
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTE---------YELWV 71 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~---------~~~~~ 71 (689)
++++++++++ +++|+|++.++++.+||++++||||||||+||||||+|||..++.......+.. .+.|+
T Consensus 431 ~k~~~l~~~~--~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~ 508 (861)
T TIGR00392 431 IKDQMLEQIK--KVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAWF 508 (861)
T ss_pred HHHHHHHHhC--CcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeEEEECCCCCCcCchhHHHHHHHHHHhCCcccc
Confidence 4788999998 899999999999999999999999999999999999999986543211111100 01111
Q ss_pred cCCChHHHHHHhhhc--cccccCCccccccccccccccccCCcceeeecC-----------Ccccccccc----------
Q psy944 72 SGRSKEEAEQKAISK--FNVTQADISLRQDEDVLDTWFSSGLFPFSVFGW-----------PDKQRLSAN---------- 128 (689)
Q Consensus 72 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~w-----------p~~~~l~~~---------- 128 (689)
.. ......+. ..|+.+ ..+.|++|||||||||+++|+...+| |++.++.|.
T Consensus 509 ~~-----~~~~~~~~~~~~~~~~-~~~~r~~dvlDvWfdS~~~~~~~~~~~~~~~~f~~~~P~d~~i~G~Di~r~Wf~~~ 582 (861)
T TIGR00392 509 ED-----LHRDFLDKITLKSGDG-GEYRRVPDVLDVWFDSGSMPYASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSS 582 (861)
T ss_pred cc-----chhhhcCchhccCCCC-cceEEccccccchhhcCcchHHhcCCCCCcchhhccCCceEEEEecchhccHHHHH
Confidence 10 00111111 122222 57999999999999999998876654 555443333
Q ss_pred ----------CcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc
Q psy944 129 ----------GIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 129 ----------~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
.+|++|++||++++.+|+|||||+||+|+|.+++++||+|++|||++++
T Consensus 583 ~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~~ 641 (861)
T TIGR00392 583 LAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASS 641 (861)
T ss_pred HHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHhC
Confidence 3579999999999889999999999999999999999999999999987
No 49
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.97 E-value=9.8e-31 Score=284.62 Aligned_cols=169 Identities=50% Similarity=0.858 Sum_probs=132.7
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAE 80 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (689)
+++++++++++++++|+|++.++++.+||++++||||||||.||+|||+|||.+++... +.. ...+..
T Consensus 178 ~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~-----------~~~-~~~~~~ 245 (382)
T cd00817 178 LAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWV-----------VAR-EEDEAI 245 (382)
T ss_pred HHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEE-----------ecc-hhHHHH
Confidence 46889999997779999999999999999999999999999999999999997644321 111 111111
Q ss_pred HHhhhccccccCCccccccccccccccccCCcceeeec-----------CCccccccccC--------------------
Q psy944 81 QKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFG-----------WPDKQRLSANG-------------------- 129 (689)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~-----------wp~~~~l~~~~-------------------- 129 (689)
........+++++..++++++|||+||||+++++.+++ ||++..+.|.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g~~ 325 (382)
T cd00817 246 DKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTGKL 325 (382)
T ss_pred HHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhhCCC
Confidence 11111222334456799999999999999999888764 56654433333
Q ss_pred cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCchh
Q psy944 130 IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 130 ~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
+++++++||++++.+|+|||||+||+|+|.+++++||+|++|||+++.+++.
T Consensus 326 p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~ 377 (382)
T cd00817 326 PFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQG 377 (382)
T ss_pred chHHeEeeeeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCcc
Confidence 2489999999998999999999999999999999999999999999887653
No 50
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=1.2e-30 Score=309.27 Aligned_cols=168 Identities=27% Similarity=0.501 Sum_probs=128.6
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCC-CeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNR-DWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEA 79 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~-DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (689)
++++++++++ +++|+|++.++++.+||++++ ||||||||+||+|||+|||..|+....+.. .++.-.+...
T Consensus 365 ~~~~~~~~~~--~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~-----~~l~~~~~~d- 436 (800)
T PRK13208 365 LKEELLERGK--EINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDE-----EDLPVDPTKD- 436 (800)
T ss_pred HHHHHHHhhc--CcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCch-----hhhccCchhh-
Confidence 4788999998 689999999999999999977 999999999999999999987764322110 1110001100
Q ss_pred HHHhhhccccccCC-ccccccccccccccccCCcceeeecC-----------Ccccccccc-------------------
Q psy944 80 EQKAISKFNVTQAD-ISLRQDEDVLDTWFSSGLFPFSVFGW-----------PDKQRLSAN------------------- 128 (689)
Q Consensus 80 ~~~~~~~~~~~~~~-~~~~~~~dv~D~Wf~S~~~~~~~~~w-----------p~~~~l~~~------------------- 128 (689)
....+.|+.++ ..+.+++||||+||+|+++|+++++| |++.+..|.
T Consensus 437 ---~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~ 513 (800)
T PRK13208 437 ---EPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTG 513 (800)
T ss_pred ---ccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcC
Confidence 01112233332 35899999999999999998876654 555443333
Q ss_pred -CcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 129 -GIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 129 -~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
.+|++|++||++++.+|+|||||+||+|+|.+++++||+|++||||+ .++.
T Consensus 514 ~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~-~~~~ 565 (800)
T PRK13208 514 KLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAA-SARL 565 (800)
T ss_pred CCCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHh-cCCC
Confidence 24699999999998899999999999999999999999999999999 5543
No 51
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.96 E-value=7.3e-29 Score=265.66 Aligned_cols=143 Identities=34% Similarity=0.532 Sum_probs=135.2
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHH
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIE 314 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~ 314 (689)
++|+|++|||||||.+||||+++++++|+++||+||+|++|.+++|+|+||+||+.++++.++......+..++++++.+
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999998876443334567789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccc
Q psy944 315 KVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHW 377 (689)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w 377 (689)
.|++|++++.+.+++++++||++.||++++.|+++.|.+.++++|.+|+++|+||++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~ 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee
Confidence 999999999999999999999999999999999999999999999999999999999999999
No 52
>PLN02959 aminoacyl-tRNA ligase
Probab=99.95 E-value=9.7e-29 Score=297.51 Aligned_cols=169 Identities=20% Similarity=0.253 Sum_probs=122.8
Q ss_pred HHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHHH
Q psy944 2 AEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAEQ 81 (689)
Q Consensus 2 ~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (689)
+++++++++ +|+|+|+++++++.+||+|++||||||||+|||||| |++.. ..+++++...+...+..++..+
T Consensus 546 k~~a~~~l~--~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpIP-Wd~~~-----~ieslsdstiy~a~yti~~~~~ 617 (1084)
T PLN02959 546 KKKAEKCLS--KMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIP-WDEQF-----LIESLSDSTIYMAYYTVAHLLQ 617 (1084)
T ss_pred HHHHHHHHc--ccEEECHHHHHHHHHHHhCCCceeecccccCCCcCC-cccce-----eeccCCCCceeechhhHHHHHh
Confidence 678999997 899999999999999999999999999999999999 75321 0112222233333333333322
Q ss_pred HhhhccccccCCccccc-cccccccccccCCcceeee---------------cCCccccccccCc---------------
Q psy944 82 KAISKFNVTQADISLRQ-DEDVLDTWFSSGLFPFSVF---------------GWPDKQRLSANGI--------------- 130 (689)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-~~dv~D~Wf~S~~~~~~~~---------------~wp~~~~l~~~~~--------------- 130 (689)
. ....+.........+ ..||+|+||+|+.+|+.+. +||.+.++.|.++
T Consensus 618 ~-~~~~g~~~~~i~~~~~~~dV~D~wF~Sg~~p~~t~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al 696 (1084)
T PLN02959 618 G-GDMYGKDKSSIKPEQMTDEVWDFVFCGGPLPKSSDIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAI 696 (1084)
T ss_pred h-hhccCCccccCChhhcCccceeEeecCCCcccccCCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHh
Confidence 1 111111110111111 5789999999999877651 4566655555442
Q ss_pred ------CceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 131 ------HSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 131 ------~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
|+.|++||+++ .+|+|||||+||+|+|.+++++||+|++||+|+.+++.
T Consensus 697 ~~~~P~p~~v~v~G~V~-~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~~ 751 (1084)
T PLN02959 697 WAEEHWPRGFRCNGHLM-LNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAGDG 751 (1084)
T ss_pred cCCCCCCceEEEccEEe-cCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcCCc
Confidence 47899999999 99999999999999999999999999999999987654
No 53
>KOG0434|consensus
Probab=99.95 E-value=2.5e-29 Score=270.67 Aligned_cols=185 Identities=25% Similarity=0.445 Sum_probs=142.1
Q ss_pred HHhcC-CceEEccccH-HHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHHHHhhh
Q psy944 8 AVKTG-ELKIIPDHHT-KTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAEQKAIS 85 (689)
Q Consensus 8 ~i~~~-~~~~~P~~~~-~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (689)
.++++ +..|+|...| +|+.|||+|.+||.|||+|+||||||+|..++-.+.....++...+.. ++......+.+.++
T Consensus 427 ll~nn~~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLEeL-SG~kItDlHRe~iD 505 (1070)
T KOG0434|consen 427 LLRNNMKTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEEL-SGVKITDLHRESID 505 (1070)
T ss_pred HHhcccccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccCCceEEEeccHHHHHHh-cCCcchhhhhhhcC
Confidence 34443 6789999987 999999999999999999999999999976654443333333333222 23334445566677
Q ss_pred ccccccCC--ccccccccccccccccCCcceeeecCCcccc--------------------------------ccccCcC
Q psy944 86 KFNVTQAD--ISLRQDEDVLDTWFSSGLFPFSVFGWPDKQR--------------------------------LSANGIH 131 (689)
Q Consensus 86 ~~~~~~~~--~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~~--------------------------------l~~~~~~ 131 (689)
+...|... ..++|..+|||+||+||.+|.+..+||.... |-+..+|
T Consensus 506 ~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppf 585 (1070)
T KOG0434|consen 506 HITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADFIAEGLDQTRGWFYTLLVLSTALFGKPPF 585 (1070)
T ss_pred ceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhhcCchHhhhhccccccchhhHHHHHHHHHcCCCcc
Confidence 77666533 5799999999999999999999999987631 2345568
Q ss_pred ceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCchhHHHHHhhhccccC
Q psy944 132 SEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAERQRAADGQKR 194 (689)
Q Consensus 132 k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~~~~~~~~a~~~~~k 194 (689)
++|+++|+++..+|+|||||+.|.-+|..++++||+|+||+||.+ +|.-..|.++..+.+.+
T Consensus 586 kNvIvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLIn-SPVvraE~LkFkeeGVr 647 (1070)
T KOG0434|consen 586 KNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLIN-SPVVRAENLKFKEEGVR 647 (1070)
T ss_pred hheeEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeec-CccccccccccchhhHH
Confidence 999999999999999999999999999999999999999999994 55444455555544443
No 54
>PLN02563 aminoacyl-tRNA ligase
Probab=99.95 E-value=4.1e-29 Score=295.36 Aligned_cols=149 Identities=23% Similarity=0.377 Sum_probs=105.5
Q ss_pred CCCeecccCCccccccceEEEeCCC-CCC-----CCCccccccee-ecCCChHHHHHHhhhc--cccccCCccccccccc
Q psy944 32 NRDWCISRQLWWGHRIPAYYVSFND-PAK-----KPKNVTEYELW-VSGRSKEEAEQKAISK--FNVTQADISLRQDEDV 102 (689)
Q Consensus 32 l~DW~ISRqr~WG~pIP~~y~~~~~-~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~dv 102 (689)
++||||||||+||+|||+|||..|+ .+. +|..++..... ..+.+.. .+....++ ..|+.|+..++|++||
T Consensus 504 lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~-pl~~~~~~~~~~~p~cg~~~~RetDt 582 (963)
T PLN02563 504 LRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEP-PLAKAVSWVNTVDPSSGKPARRETNT 582 (963)
T ss_pred CCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCC-chhcchhhhcCcCcCCCCCcEECCCc
Confidence 7999999999999999999998766 222 22112111100 0111100 11111112 2366778889999999
Q ss_pred cccccccCCcceee----------------ecCCcccccc--------------------------ccCcCceEEEccee
Q psy944 103 LDTWFSSGLFPFSV----------------FGWPDKQRLS--------------------------ANGIHSEVFLHPIV 140 (689)
Q Consensus 103 ~D~Wf~S~~~~~~~----------------~~wp~~~~l~--------------------------~~~~~k~v~~hg~~ 140 (689)
|||||||+|+++.. .++|++..+. +..||++|++|||+
T Consensus 583 mDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmV 662 (963)
T PLN02563 583 MPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMI 662 (963)
T ss_pred CCchhhccHHHHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhcccee
Confidence 99999999875431 2356654322 23468999999999
Q ss_pred eC---------CCCc---------------------------------------------eeeeccCCccCchhhhhcCC
Q psy944 141 RD---------AHGR---------------------------------------------KMSKSLGNVIDPLDVVKGIS 166 (689)
Q Consensus 141 ~~---------~~g~---------------------------------------------KmSKS~gn~~~~~~~~~~~~ 166 (689)
++ .+|+ |||||+||+|+|.+++++||
T Consensus 663 l~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYG 742 (963)
T PLN02563 663 LGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYG 742 (963)
T ss_pred ecCccccceecCCCcCcccccccccccccccccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHHcC
Confidence 97 6777 99999999999999999999
Q ss_pred hhhHHHHHhhcCchh
Q psy944 167 LAGLQGRLLQDSNLE 181 (689)
Q Consensus 167 ~d~~r~~l~~~~~~~ 181 (689)
+|++|||+++++|+.
T Consensus 743 ADaLRl~ll~~ap~~ 757 (963)
T PLN02563 743 ADSLRLYEMFMGPLR 757 (963)
T ss_pred cHHHHHHHHhCCCcc
Confidence 999999999887754
No 55
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.95 E-value=1.3e-28 Score=263.68 Aligned_cols=143 Identities=36% Similarity=0.681 Sum_probs=115.3
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAE 80 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (689)
++++++++++ +++|+|+..++++.+||++++|||||||+.||||||+|+|..++. .++
T Consensus 160 ~~~~l~~~~~--~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~~~-----------~~~--------- 217 (338)
T cd00818 160 IKDRLLEAND--KVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGE-----------VLV--------- 217 (338)
T ss_pred HHHHHHHHHh--cCcEECHHHHHHHHHHHhcchhcceeeecccCceeeEEEecCCCe-----------EEE---------
Confidence 4688999998 578999999999999999999999999999999999988764321 011
Q ss_pred HHhhhccccccCCccccccccccccccccCCcceeeec-----------CCcccccc--------------------ccC
Q psy944 81 QKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFG-----------WPDKQRLS--------------------ANG 129 (689)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~-----------wp~~~~l~--------------------~~~ 129 (689)
.++++|+|+||||++.++...+ ||++.+.. +..
T Consensus 218 ----------------~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~~~~~~ 281 (338)
T cd00818 218 ----------------RRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGKA 281 (338)
T ss_pred ----------------ecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCeEEeecchHHhHHHHHHHHHHHHhcCCC
Confidence 3466777777777766665543 34443322 233
Q ss_pred cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCchh
Q psy944 130 IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 130 ~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
+|++|++||++++.+|+|||||+||+|+|.+++++||+|++||||++.++..
T Consensus 282 p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~~~~~~ 333 (338)
T cd00818 282 PYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYA 333 (338)
T ss_pred ccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHhCCCcc
Confidence 5799999999998899999999999999999999999999999999887654
No 56
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.94 E-value=2.6e-28 Score=288.06 Aligned_cols=149 Identities=23% Similarity=0.339 Sum_probs=105.1
Q ss_pred cCCCeecccCCccccccceEEEeCCCCCCCCC-----cccc-cceeecCCChHHHHHHhhhccccccCCccccccccccc
Q psy944 31 NNRDWCISRQLWWGHRIPAYYVSFNDPAKKPK-----NVTE-YELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLD 104 (689)
Q Consensus 31 ~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D 104 (689)
+++||||||||+||+|||+|||..|+....++ .+.. +.....+.++......+. ...|+.|+..+.|++||||
T Consensus 410 rlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~-~~~cp~cg~~~~retDtmD 488 (842)
T TIGR00396 410 RLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWV-NVTCPSCGKPALRETDTMD 488 (842)
T ss_pred ecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhh-cCcCccCCCCcEeCCCCCC
Confidence 47999999999999999999998776422221 1111 111111111111111111 2456667788999999999
Q ss_pred cccccCCcceee----------------ecCCccccccc--------------------------cCcCceEEEcceeeC
Q psy944 105 TWFSSGLFPFSV----------------FGWPDKQRLSA--------------------------NGIHSEVFLHPIVRD 142 (689)
Q Consensus 105 ~Wf~S~~~~~~~----------------~~wp~~~~l~~--------------------------~~~~k~v~~hg~~~~ 142 (689)
|||||||+++.. .++|++..+.| ..||++|++|||+++
T Consensus 489 tw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~ 568 (842)
T TIGR00396 489 TFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLG 568 (842)
T ss_pred CcccCCHHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEe
Confidence 999999664321 13566643322 235799999999998
Q ss_pred ----CCCc---------------------------eeeeccCCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 143 ----AHGR---------------------------KMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 143 ----~~g~---------------------------KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
.+|+ |||||+||+|+|.+++++||+|++|+|++++++.
T Consensus 569 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~ 637 (842)
T TIGR00396 569 FYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPI 637 (842)
T ss_pred eeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCc
Confidence 8898 9999999999999999999999999999976554
No 57
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.94 E-value=8.3e-27 Score=248.00 Aligned_cols=136 Identities=37% Similarity=0.594 Sum_probs=127.0
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHH
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEK 315 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~ 315 (689)
+|+|++|||||||.+|+||+++++++|+++||+||+|++|.+++|+||||+||+.++++... .......+++|.+.
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~----~~~~~~~~~~~~~~ 76 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGG----RKKKTIWIEEFRED 76 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcC----cccccccHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999987543 22333447889999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccc
Q psy944 316 VWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLV 375 (689)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v 375 (689)
|++|++++.+.|+++|++||+++||++++.|+++.|.+.++++|.+|+++|+||++..+|
T Consensus 77 ~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v 136 (312)
T cd00668 77 PKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV 136 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee
Confidence 999999999999999999999999999999999999999999999999999999999888
No 58
>PLN02224 methionine-tRNA ligase
Probab=99.93 E-value=3.8e-26 Score=259.29 Aligned_cols=168 Identities=21% Similarity=0.260 Sum_probs=138.5
Q ss_pred CCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHH
Q psy944 232 NPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREK 311 (689)
Q Consensus 232 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~ 311 (689)
..+++|+|++|||||||.|||||+++++++|+++||+||+|++|.|++|+|+||++|+.++++ .|..+
T Consensus 66 ~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~-----~g~~p------- 133 (616)
T PLN02224 66 DEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAA-----NGRNP------- 133 (616)
T ss_pred CCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHH-----cCCCh-------
Confidence 456789999999999999999999999999999999999999999999999999999987753 23332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCcee
Q psy944 312 FIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVD 391 (689)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~ 391 (689)
.++++++...+++.+++||+++| ++++|++|.|.+.|+++|.+|+++|+||++.++++|||+|++.+.+.|+.
T Consensus 134 -----~e~~~~~~~~~~~~~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~ 206 (616)
T PLN02224 134 -----PEHCDIISQSYRTLWKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELL 206 (616)
T ss_pred -----HHHHHHHHHHHHHHHHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHc
Confidence 24566677888999999999665 99999999999999999999999999999999999999999999998864
Q ss_pred eeeecCCccccccCCCCCCcccceeccccccCCC
Q psy944 392 KVELTGRTPLRVPGYANPVDFGVLASFAYKLDDG 425 (689)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (689)
.. .. .+....++.+....+++|++...
T Consensus 207 ~~---~~----~~~~~~~~~~~~e~~~ff~Ls~~ 233 (616)
T PLN02224 207 EN---NC----CPVHQMPCVARKEDNYFFALSKY 233 (616)
T ss_pred CC---CC----CCCCCCcceEEecceEEEEhHHH
Confidence 21 01 11123344455556666766543
No 59
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.93 E-value=4.9e-26 Score=265.64 Aligned_cols=142 Identities=20% Similarity=0.197 Sum_probs=130.2
Q ss_pred CCCCCceeecCCCCCCCccchhHHHHH-HHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCH
Q psy944 231 KNPKGKFVMVIPPPNVTGTLHLGHALT-NAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGR 309 (689)
Q Consensus 231 ~~~~~~f~i~~~pP~~nG~lHiGH~~~-~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~ 309 (689)
..++++|+||.|+|||||.|||||+++ ++.+|+++||+||+|++|+|..|+|+||+||+.++++ .|.+
T Consensus 13 ~~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~-----~g~~------ 81 (801)
T PLN02610 13 IPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALE-----ENCT------ 81 (801)
T ss_pred CCCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHH-----cCCC------
Confidence 356678999999999999999999997 5779999999999999999999999999999988864 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCc
Q psy944 310 EKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIE 389 (689)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~e 389 (689)
++++++++.+.+++++++|||++| ++++|+++.|.+.|+++|.+|+++|+||++.+.++||+.|+++|++..
T Consensus 82 ------p~e~~d~~~~~~~~~~~~l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~ 153 (801)
T PLN02610 82 ------PKEICDKYHAIHKEVYDWFDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRL 153 (801)
T ss_pred ------HHHHHHHHHHHHHHHHHHcCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHH
Confidence 457788899999999999998888 899999999999999999999999999999999999999999999998
Q ss_pred ee
Q psy944 390 VD 391 (689)
Q Consensus 390 v~ 391 (689)
|+
T Consensus 154 v~ 155 (801)
T PLN02610 154 VE 155 (801)
T ss_pred hc
Confidence 75
No 60
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=2.3e-26 Score=273.92 Aligned_cols=168 Identities=18% Similarity=0.221 Sum_probs=114.7
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAE 80 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (689)
++++++++++ +++|+|++.++++.+||++++||||||||+||||||+...|.+. ++++...++..++.....
T Consensus 408 ~k~~~~~~~~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~~~~w~~e------sl~ds~iY~~~~~i~~~l 479 (897)
T PRK12300 408 WKELAHKALD--NMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPWDEEWIIE------SLSDSTIYMAYYTIAHKI 479 (897)
T ss_pred HHHHHHHHHc--cCEEECHHHHHHHHHHHhhhhhcceeeccccCCcCCccCCEEee------eccccchhhhHHHHHHHH
Confidence 3688999998 89999999999999999999999999999999999952222211 122222221111111111
Q ss_pred HHhhhccccccCC-------ccccccccccccccccCCccee--------eecCCccccccccCc---------------
Q psy944 81 QKAISKFNVTQAD-------ISLRQDEDVLDTWFSSGLFPFS--------VFGWPDKQRLSANGI--------------- 130 (689)
Q Consensus 81 ~~~~~~~~~~~~~-------~~~~~~~dv~D~Wf~S~~~~~~--------~~~wp~~~~l~~~~~--------------- 130 (689)
.. .++++.. .-+....+.+++|++|++.+.. ..+||.+.++.|.++
T Consensus 480 ~~----~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~ 555 (897)
T PRK12300 480 RE----YGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAI 555 (897)
T ss_pred HH----cCCChHHCChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccCCceEEEeeeccCccHHHHHHHHHHHh
Confidence 11 1111100 0011222455666777742211 126788876655542
Q ss_pred ------CceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCchh
Q psy944 131 ------HSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 131 ------~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
|++|++||++++ +|+|||||+||+|+|.+++++||+|++||||+++++..
T Consensus 556 ~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~~~ 611 (897)
T PRK12300 556 FPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELL 611 (897)
T ss_pred cCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCCCC
Confidence 599999999996 89999999999999999999999999999999876643
No 61
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3e-25 Score=246.63 Aligned_cols=140 Identities=28% Similarity=0.363 Sum_probs=131.4
Q ss_pred CCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHH
Q psy944 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFI 313 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~ 313 (689)
+++|+||.++|||||.|||||+++++.+|+++||+||+|++|+|..|.|.||+||+.+|++ .|.+++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~-----~g~tP~-------- 70 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK-----EGITPQ-------- 70 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHH-----cCCCHH--------
Confidence 5789999999999999999999999999999999999999999999999999999999875 355554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCceee
Q psy944 314 EKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDK 392 (689)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~ 392 (689)
++++++.+.+++.++.|+|++| .+.+|+++.|.+.++++|.+|+++|+||.+...++||++|+++|+|.+|+.
T Consensus 71 ----el~d~~~~~~~~~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g 143 (558)
T COG0143 71 ----ELVDKNHEEFKELFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEG 143 (558)
T ss_pred ----HHHHHHHHHHHHHHHHhCCccc--ccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheec
Confidence 5688888999999999999999 899999999999999999999999999999999999999999999999864
No 62
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.92 E-value=1.7e-26 Score=272.17 Aligned_cols=142 Identities=24% Similarity=0.391 Sum_probs=97.6
Q ss_pred cCCCeecccCCccccccceEEEeCCCCCCCCCc-----ccccceeecCCC-hHHHHHHhhhccccccCCccccccccccc
Q psy944 31 NNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKN-----VTEYELWVSGRS-KEEAEQKAISKFNVTQADISLRQDEDVLD 104 (689)
Q Consensus 31 ~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dv~D 104 (689)
+++||||||||+||+|||+|||..|+....+.. +.. .....+.. +-.....+.+ ..|+.|+..++|++||||
T Consensus 414 ~l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~re~Dv~D 491 (805)
T PRK00390 414 RLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPE-DVVPDGTGSPLAKHPEWVN-VTCPKCGKPARRETDTMD 491 (805)
T ss_pred ECCCccccccccCCCceeEEEECCCCceeCchHhhhhhhhh-hcccCCCCChhhhchhhhC-CCccccCCCceeCCcccc
Confidence 369999999999999999999987663221110 110 00111100 0001111111 345556778999999999
Q ss_pred cccccCCcceeeec-----------------CCccccccc--------------------------cCcCceEEEcceee
Q psy944 105 TWFSSGLFPFSVFG-----------------WPDKQRLSA--------------------------NGIHSEVFLHPIVR 141 (689)
Q Consensus 105 ~Wf~S~~~~~~~~~-----------------wp~~~~l~~--------------------------~~~~k~v~~hg~~~ 141 (689)
|||||+|+ +..+. +|++.++.| ..||++|++||++
T Consensus 492 twfdSsw~-~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v- 569 (805)
T PRK00390 492 TFVGSSWY-YLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV- 569 (805)
T ss_pred cccccccH-HHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE-
Confidence 99999854 33333 466543322 3357999999999
Q ss_pred CCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCchh
Q psy944 142 DAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 142 ~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
|||||+||+|+|.+++++||+|++|+|++++++..
T Consensus 570 -----KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~ 604 (805)
T PRK00390 570 -----KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPE 604 (805)
T ss_pred -----EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999866543
No 63
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=7.2e-25 Score=251.03 Aligned_cols=138 Identities=27% Similarity=0.355 Sum_probs=127.8
Q ss_pred CceeecCCCCCCCccchhHHHHHH-HHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHH
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTN-AVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFI 313 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~-~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~ 313 (689)
++|+|+.|||||||.|||||++++ +.+|+++||+||+|++|.+++|+|+||++|+.++++. |..
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~-----g~~---------- 67 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKE-----GVT---------- 67 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHc-----CCC----------
Confidence 579999999999999999999998 9999999999999999999999999999999988652 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCcee
Q psy944 314 EKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVD 391 (689)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~ 391 (689)
++++++++.+.+++++++||+..| .++.|++|.|.+.++++|.+|+++|+||++.++++|||.|+|+|++..|.
T Consensus 68 --~~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~ 141 (556)
T PRK12268 68 --PQELADKYHEEHKEDFKKLGISYD--LFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVE 141 (556)
T ss_pred --HHHHHHHHHHHHHHHHHHcCCcCC--CCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCcccee
Confidence 346788899999999999999766 68899999999999999999999999999999999999999999999885
No 64
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=8.8e-26 Score=250.87 Aligned_cols=164 Identities=22% Similarity=0.373 Sum_probs=133.2
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHcc-CCCeeccc-CCccccccc-----eEEEeCCCCCCCCCcccccceeecC
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLEN-NRDWCISR-QLWWGHRIP-----AYYVSFNDPAKKPKNVTEYELWVSG 73 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~-l~DW~ISR-qr~WG~pIP-----~~y~~~~~~~~~~~~~~~~~~~~~~ 73 (689)
+++++++++++++..+.|.+.++++.+||++ ++|||||| ...||+||| ++|||+|++.+ +++....+..
T Consensus 197 ~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~~p~kv~YVWfDAlig---Yisa~~~~~~- 272 (558)
T COG0143 197 FQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPGDPGKVIYVWFDALIG---YISALGELAE- 272 (558)
T ss_pred hHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCCCCCCEEEEeeccHHH---HHHHhcchhc-
Confidence 4788999999888888999999999999998 99999999 799999999 69999998764 2332222211
Q ss_pred CChHHHHHHhhhccccccCCccccccccccccccccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeeeccC
Q psy944 74 RSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSLG 153 (689)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSKS~g 153 (689)
.+. ......+|.. +.-.+.+++|+++.+||+++||++++..+..+|++|++|||++ .+|+|||||+|
T Consensus 273 ~~~----~~~~~~~W~~--------~~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~~i~ahg~l~-~~G~KmSKSrG 339 (558)
T COG0143 273 IGD----DEDFKKFWPA--------DDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPTRIFAHGFLT-LEGQKMSKSRG 339 (558)
T ss_pred cCC----hHHHHhhCCC--------CCceEEEEeccccCcchhhHHHHHHHhCCCCCCCEEEeeeeEE-ECCccccccCC
Confidence 011 1123333321 1123557899999999999999997777888999999999999 89999999999
Q ss_pred CccCchhhhhcCChhhHHHHHhhcCchh
Q psy944 154 NVIDPLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 154 n~~~~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
|+|+|.+++++||+|.+||||+...|..
T Consensus 340 ~~V~~~~~~~~~~~D~lRYyL~~~~p~~ 367 (558)
T COG0143 340 NVVDPDELLEQYGVDALRYYLARELPEG 367 (558)
T ss_pred cEEeHHHHHHHcCchHhHHHHHHhCCCC
Confidence 9999999999999999999999887753
No 65
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.91 E-value=1.1e-24 Score=231.44 Aligned_cols=126 Identities=33% Similarity=0.546 Sum_probs=119.1
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHH
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEK 315 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~ 315 (689)
||+|+.|||||||.+|+||+++++++|+++||+||+|++|.+++|+|+||+|++.++++. |. .
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~-----g~------------~ 63 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI-----GR------------D 63 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHc-----CC------------C
Confidence 689999999999999999999999999999999999999999999999999999887642 22 2
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeeccccccc
Q psy944 316 VWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWS 378 (689)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~ 378 (689)
|.+|++++.+.+++++++||+++||++++.|++|.|.+.++++|.+|+++|+||++..+|+||
T Consensus 64 ~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~ 126 (314)
T cd00812 64 PEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC 126 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee
Confidence 678999999999999999999999999999999999999999999999999999999999999
No 66
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.91 E-value=9e-25 Score=237.64 Aligned_cols=137 Identities=26% Similarity=0.374 Sum_probs=120.5
Q ss_pred eeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHH
Q psy944 237 FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKV 316 (689)
Q Consensus 237 f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~ 316 (689)
|+||.|+|||||.|||||+.+++.+|+++||+||+|++|++..|+|+||++|+.+|++ .|.++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~-----~g~~p------------ 63 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEK-----QGIDP------------ 63 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHH-----TTS-H------------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHH-----cCCCH------------
Confidence 6899999999999999999999999999999999999999999999999999998875 24443
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCceee
Q psy944 317 WEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDK 392 (689)
Q Consensus 317 ~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~ 392 (689)
.++++.+.+.+++.++++||++| ++..|+++.|.+.|+++|.+|+++|+||++...++||+.|+++|++.+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~I~~D--~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g 137 (391)
T PF09334_consen 64 EEFCDKYSAKFKELLEALNISYD--RFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEG 137 (391)
T ss_dssp HHHHHHHHHHHHHHHHHTT---S--EEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCc--ceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeec
Confidence 36788889999999999999999 789999999999999999999999999999999999999999999999863
No 67
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.91 E-value=3e-24 Score=228.86 Aligned_cols=132 Identities=27% Similarity=0.357 Sum_probs=121.7
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHH
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEK 315 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~ 315 (689)
+|+|+.|||||||.+||||+++++++|+++||+||+|++|.+.+|+|+||++|+.++++ .|..+
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~-----~g~~~----------- 64 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE-----EGVTP----------- 64 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHH-----cCCCH-----------
Confidence 58999999999999999999999999999999999999999999999999999988864 23332
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccC
Q psy944 316 VWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAIS 386 (689)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls 386 (689)
.++++.+.+.+++++++||+.+| .++.|+++.+.+.++++|.+|.++|++|++...+.||+.|+++|+
T Consensus 65 -~e~~~~~~~~~~~~l~~LgI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~ 132 (319)
T cd00814 65 -QELCDKYHEIFKDLFKWLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP 132 (319)
T ss_pred -HHHHHHHHHHHHHHHHHcCCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee
Confidence 35688889999999999999776 788899999999999999999999999999999999999999999
No 68
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=2.9e-24 Score=249.87 Aligned_cols=138 Identities=23% Similarity=0.249 Sum_probs=127.9
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHH
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIE 314 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~ 314 (689)
++|+|+.|||||||.+||||+++++++|+++||+||+|++|.+++|+|+||+||+.++++ .|..+
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~-----~g~~p---------- 66 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEK-----EGITP---------- 66 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHH-----cCCCH----------
Confidence 469999999999999999999999999999999999999999999999999999998865 24333
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCcee
Q psy944 315 KVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVD 391 (689)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~ 391 (689)
.++++++.+.+++++++||+++| .+++|+++.|.+.++++|.+|+++|+||++..+++||+.|+++|++.+|+
T Consensus 67 --~e~~~~~~~~~~~~~~~l~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~ 139 (673)
T PRK00133 67 --EELIARYHAEHKRDFAGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVK 139 (673)
T ss_pred --HHHHHHHHHHHHHHHHHhCCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchhee
Confidence 35688899999999999999987 68899999999999999999999999999999999999999999999885
No 69
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.90 E-value=3.1e-25 Score=257.60 Aligned_cols=158 Identities=24% Similarity=0.332 Sum_probs=123.3
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHH-HHHcc-CCCeecccCC-ccccccc-----eEEEeCCCCCCCCCcccccceeec
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWY-QWLEN-NRDWCISRQL-WWGHRIP-----AYYVSFNDPAKKPKNVTEYELWVS 72 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~-~~l~~-l~DW~ISRqr-~WG~pIP-----~~y~~~~~~~~~~~~~~~~~~~~~ 72 (689)
|++++++++++++..+.|+..++++. +||++ ++|||||||| .||+||| ++|||+|+..+ +++.. .|..
T Consensus 168 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~---y~s~~-~~~~ 243 (648)
T PRK12267 168 YQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLN---YITAL-GYGS 243 (648)
T ss_pred HHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHH---HHHHc-CCCC
Confidence 57899999987766678999999999 99998 9999999997 6999999 47888877543 11111 1100
Q ss_pred CCChHHHHHHhhhccccccCCccccccccccccccccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeeecc
Q psy944 73 GRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSL 152 (689)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSKS~ 152 (689)
... .....+| +. + -+++|+++.+||+++||..++..+..+|++|++||+++ .+|+|||||+
T Consensus 244 ~~~------~~~~~~w--p~--------~--~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~hg~l~-~eg~KMSKS~ 304 (648)
T PRK12267 244 DDD------ELFKKFW--PA--------D--VHLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWL-MKDGKMSKSK 304 (648)
T ss_pred CCc------hHHHhhc--cc--------c--eEEEeeeecchhHHHHHHHHHhCCCCCCcEEEecceEE-ECCceecccC
Confidence 000 0011122 11 1 24589999999999999997767778899999999999 6899999999
Q ss_pred CCccCchhhhhcCChhhHHHHHhhcCchh
Q psy944 153 GNVIDPLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 153 gn~~~~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
||+|+|.+++++||+|++||||+.+++..
T Consensus 305 GN~i~p~d~l~~ygaD~lR~~L~~~~~~~ 333 (648)
T PRK12267 305 GNVVDPEELVDRYGLDALRYYLLREVPFG 333 (648)
T ss_pred CcccCHHHHHHHcCCcHHHHHHHhcCCCC
Confidence 99999999999999999999999876643
No 70
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.90 E-value=8e-24 Score=245.83 Aligned_cols=164 Identities=26% Similarity=0.388 Sum_probs=139.0
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHH
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIE 314 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~ 314 (689)
++|+|+.|+|||||.+||||+++++++|+++||+||+|++|.|.+|+|+||++|+.++++ .|..+
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~-----~g~~~---------- 68 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEK-----AGKTP---------- 68 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHH-----cCCCH----------
Confidence 589999999999999999999999999999999999999999999999999999887754 24333
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCceeeee
Q psy944 315 KVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVE 394 (689)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~ 394 (689)
.++++.+.+.|+++|++|||++| .+++|+++.+.+.++++|.+|+++|+||++...++||+.|+++|++.++...
T Consensus 69 --~e~~d~~~~~fk~~l~~lgI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~- 143 (648)
T PRK12267 69 --QEYVDEISAGFKELWKKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDG- 143 (648)
T ss_pred --HHHHHHHHHHHHHHHHHcCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccC-
Confidence 35788899999999999999887 7899999999999999999999999999999999999999999999985421
Q ss_pred ecCCccccccCCCCCCcccceeccccccCC
Q psy944 395 LTGRTPLRVPGYANPVDFGVLASFAYKLDD 424 (689)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (689)
+. ++.+..++.+....+++|++..
T Consensus 144 --~~----c~~cg~~~e~~~~~~~f~~l~~ 167 (648)
T PRK12267 144 --GK----CPDCGREVELVKEESYFFRMSK 167 (648)
T ss_pred --Cc----CCCCCCcCeEEecceEEEEcHH
Confidence 11 1223444555555666666554
No 71
>KOG0436|consensus
Probab=99.90 E-value=3.1e-25 Score=228.37 Aligned_cols=160 Identities=25% Similarity=0.411 Sum_probs=125.5
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHcc-CCCeeccc--C-Cccccccce-----EEEeCCCCCCCCCcccccceee
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLEN-NRDWCISR--Q-LWWGHRIPA-----YYVSFNDPAKKPKNVTEYELWV 71 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~-l~DW~ISR--q-r~WG~pIP~-----~y~~~~~~~~~~~~~~~~~~~~ 71 (689)
|+.++.++++.|+-.+.|+..++.+.+||+. ++|.+||| + ..||+|+|- +|||+|+-.. +++.
T Consensus 209 fqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~n---YiSv----- 280 (578)
T KOG0436|consen 209 FQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLN---YISV----- 280 (578)
T ss_pred hhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhh---HHHh-----
Confidence 4678899999999899999999999999998 99999999 4 699999993 8888876332 1111
Q ss_pred cCCChHHHHHH-hhhccccccCCccccccccccccccccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeee
Q psy944 72 SGRSKEEAEQK-AISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSK 150 (689)
Q Consensus 72 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSK 150 (689)
-+++.+....+ .....| +...++ ++++|..||+++||++++..|..+|+.|++||+++ .+|.||||
T Consensus 281 ig~~~~~~N~k~~ls~~w--Pat~Hv----------IGKDIlrFHavYWPafLmaAGlplP~~I~vHghwt-~ngmKMsK 347 (578)
T KOG0436|consen 281 IGYPNKQQNLKTALSFGW--PATLHV----------IGKDILRFHAVYWPAFLMAAGLPLPKMIFVHGHWT-KNGMKMSK 347 (578)
T ss_pred hcCCchhccccceeecCC--Cceeee----------hhhhhhhhhhhhhHHHHHhcCCCCccEEEEeeeee-ecceecch
Confidence 11111100000 011111 112222 89999999999999998888888999999999998 99999999
Q ss_pred ccCCccCchhhhhcCChhhHHHHHhhcCchh
Q psy944 151 SLGNVIDPLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 151 S~gn~~~~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
|+|||++|.+++++||+|++|||||..+.+.
T Consensus 348 SLGNvvdP~~l~~kygvD~vRyflLr~~~l~ 378 (578)
T KOG0436|consen 348 SLGNVVDPFELVQKYGVDAVRYFLLREGELG 378 (578)
T ss_pred hhccccCHHHHHHHhCccceeeEeeeccccC
Confidence 9999999999999999999999999887654
No 72
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.90 E-value=1.6e-24 Score=259.33 Aligned_cols=163 Identities=17% Similarity=0.213 Sum_probs=112.5
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAE 80 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (689)
++++++++++ +++|+|+..++++.+||++++||||||||+||||||+...|. .+++++...++..+......
T Consensus 455 ~k~~~~~~l~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~------ieslsdstiY~~~~~i~~~l 526 (938)
T TIGR00395 455 WKELAHECLE--GMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWL------IESLSDSTIYMAYYTIAHYL 526 (938)
T ss_pred HHHHHHHHHh--cCEEeCHHHHHHHHHHHhhhhhcccccccccCcccceeecEE------eeecchhhhhhhhccHHHHh
Confidence 3688999998 789999999999999999999999999999999999411111 11222222222222222211
Q ss_pred HHhhhccccccCCccccccccccccccccCCcc---------------eeeecCCccccccccCc---------------
Q psy944 81 QKAISKFNVTQADISLRQDEDVLDTWFSSGLFP---------------FSVFGWPDKQRLSANGI--------------- 130 (689)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~---------------~~~~~wp~~~~l~~~~~--------------- 130 (689)
. ..++.+ ..+ ..+++|+||.++-.+ -...+||.+.+..|.++
T Consensus 527 ~----~~~~~~--~~l--~~ev~D~~~~~~~~~~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~ 598 (938)
T TIGR00395 527 N----KDYYGN--EQM--TDEFFDYIFLGKGDVKNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAI 598 (938)
T ss_pred h----ccCCCh--HHC--CcccCceEEECCCChhhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHc
Confidence 1 111110 112 245666666533110 01236788766555442
Q ss_pred ------CceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 131 ------HSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 131 ------~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
|+.|++||+++ .+|+|||||+||+|+|.+++++||+|++||||+++++.
T Consensus 599 ~~~~~~Pk~i~~~G~vl-~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~~ 653 (938)
T TIGR00395 599 FPEKFWPRGIVVNGYVM-LEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAET 653 (938)
T ss_pred CCccccCcEEEEeceEE-eCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCCC
Confidence 59999999999 49999999999999999999999999999999987654
No 73
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.89 E-value=2.1e-23 Score=237.57 Aligned_cols=137 Identities=26% Similarity=0.354 Sum_probs=125.2
Q ss_pred eeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHH
Q psy944 237 FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKV 316 (689)
Q Consensus 237 f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~ 316 (689)
|+|+.|||||||.+||||+++++.+|+++||+||+|++|.+++|+|+||.+|+.++++ .|.. +
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~-----~g~~------------~ 63 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQ-----EGLT------------P 63 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHH-----cCCC------------H
Confidence 6899999999999999999999999999999999999999999999999999988864 2332 2
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCceee
Q psy944 317 WEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDK 392 (689)
Q Consensus 317 ~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~ 392 (689)
.++++.+.+.+++++++||+++| .+..|+++.|.+.++++|.+|+++|+||++..+++||+.|+|+|++.+|+.
T Consensus 64 ~e~~~~~~~~~~~~l~~LgI~~D--~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g 137 (530)
T TIGR00398 64 KELVDKYHEEFKDDWKWLNISFD--RFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEG 137 (530)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcC
Confidence 36788889999999999999887 567899999999999999999999999999999999999999999998753
No 74
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=2.2e-24 Score=247.05 Aligned_cols=167 Identities=19% Similarity=0.181 Sum_probs=114.1
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHc-cCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHH-
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLE-NNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEE- 78 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (689)
++++++++++ ++.++|+..++++.+||+ +++||||||||+|||||| |++..+ ....+|++......
T Consensus 196 ~~~~l~~~~~--~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP-~~~~~~---------~~iyvW~da~~~y~~ 263 (556)
T PRK12268 196 FAERLRAWIE--SSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP-WPGFEG---------KVFYVWFDAVIGYIS 263 (556)
T ss_pred HHHHHHHHHh--hccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCC-CCCCCC---------cEEEEeehHhhHHHH
Confidence 4788999998 578999999999999999 799999999999999999 432110 11234444321110
Q ss_pred HHHHhhhccccccCCccccccccc-cccccccCCcceeeecCCccccccc--cCcCceEEEcceeeCCCCceeeeccCCc
Q psy944 79 AEQKAISKFNVTQADISLRQDEDV-LDTWFSSGLFPFSVFGWPDKQRLSA--NGIHSEVFLHPIVRDAHGRKMSKSLGNV 155 (689)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~dv-~D~Wf~S~~~~~~~~~wp~~~~l~~--~~~~k~v~~hg~~~~~~g~KmSKS~gn~ 155 (689)
.........+.+..-..+..+.+. .-..+|+++.+||++.||...+..+ ..+|+.+++||+++ .+|+|||||+||+
T Consensus 264 ~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~-~~G~KMSKS~GN~ 342 (556)
T PRK12268 264 ASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLT-LEGGKFSKSRGWG 342 (556)
T ss_pred HHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEE-ECCeeeccCCCcc
Confidence 000000000000000000011111 1123456777888888998855455 55789999999998 5899999999999
Q ss_pred cCchhhhhcCChhhHHHHHhhcCch
Q psy944 156 IDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 156 ~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
|+|.+++++||+|++|||+++.++.
T Consensus 343 I~p~dli~~yGaDalR~~ll~~~~~ 367 (556)
T PRK12268 343 IWVDDALERYPPDYLRYYLAANAPE 367 (556)
T ss_pred cCHHHHHHHcCcHHHHHHHHhcCCC
Confidence 9999999999999999999987664
No 75
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=3e-24 Score=249.77 Aligned_cols=161 Identities=21% Similarity=0.308 Sum_probs=123.7
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHcc-CCCeecccCCcc-ccccc-----eEEEeCCCCCCCCCcccccceeecC
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLEN-NRDWCISRQLWW-GHRIP-----AYYVSFNDPAKKPKNVTEYELWVSG 73 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~-l~DW~ISRqr~W-G~pIP-----~~y~~~~~~~~~~~~~~~~~~~~~~ 73 (689)
++++++++++++ ..| |+.+++++.+||++ ++|||||||+.| |+||| ++|+|+++..+ +++....|...
T Consensus 194 ~~~~l~~~~~~~-~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~~~~~~iyVW~dal~~---Yl~~~~~~~~~ 268 (673)
T PRK00133 194 FEEFLKEWITRS-GEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPGAPGKVFYVWLDAPIG---YISSTKNLCDK 268 (673)
T ss_pred HHHHHHHHHhcC-CCC-CHHHHHHHHHHHhCCCcccceeeeCCccceECCCCCCeEEEEcccchhh---hhHHHhhhccc
Confidence 478899999753 345 88999999999986 999999999999 99999 58899877542 22211111110
Q ss_pred CChHHHHHHhhhccccccCCccccccc-cccccccccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeeecc
Q psy944 74 RSKEEAEQKAISKFNVTQADISLRQDE-DVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSL 152 (689)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSKS~ 152 (689)
. .....+.+|. .+. ..+-+++|+++.+||+++||+.++..+..+|++|++|||+++ +|+|||||+
T Consensus 269 ~-----~~~~~~~~w~--------~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~~lP~~v~~hg~v~~-~G~KMSKS~ 334 (673)
T PRK00133 269 R-----GGLDWDEYWK--------KDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYRLPTNVFAHGFLTV-EGAKMSKSR 334 (673)
T ss_pred c-----cchhHHHhcC--------CCCCceEEEEEeecchhHHHHHHHHHHHhCCCCCCCEEeeeccEEe-cCCcccccC
Confidence 0 0011222221 111 223467999999999999999977777788999999999996 999999999
Q ss_pred CCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 153 GNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 153 gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
||+|+|.+++++||+|++||||++.++.
T Consensus 335 GNvV~p~dlie~ygaDalR~~ll~~~~~ 362 (673)
T PRK00133 335 GTFIWARTYLDHLDPDYLRYYLAAKLPE 362 (673)
T ss_pred CcccCHHHHHHHcCchHHHHHHHhcCCC
Confidence 9999999999999999999999987664
No 76
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=5e-23 Score=234.02 Aligned_cols=138 Identities=25% Similarity=0.328 Sum_probs=125.9
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHH
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIE 314 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~ 314 (689)
++|+|++|||||||.+||||+++++.+|+++||+||+|++|.+++|+|+||.+|+..+++ .|..+
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~-----~g~~~---------- 65 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEE-----AGISP---------- 65 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHH-----cCCCH----------
Confidence 479999999999999999999999999999999999999999999999999999877643 23332
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCcee
Q psy944 315 KVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVD 391 (689)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~ 391 (689)
.++++.+.+.|+++|++||+.+| .++.|+++.+.+.++++|.+|+++|++|++..+|+||+.|+++|++.|+.
T Consensus 66 --~~~~~~~~~~~~~~l~~l~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~ 138 (511)
T PRK11893 66 --QELADRNSAAFKRLWEALNISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI 138 (511)
T ss_pred --HHHHHHHHHHHHHHHHHhCCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc
Confidence 35688889999999999999877 67889999999999999999999999999999999999999999999874
No 77
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.89 E-value=9.5e-24 Score=224.58 Aligned_cols=156 Identities=29% Similarity=0.411 Sum_probs=115.6
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccc--eEEEeCCCCCCCCCcccccceeecCCChHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIP--AYYVSFNDPAKKPKNVTEYELWVSGRSKEE 78 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (689)
++++++++++++ .|.|+..++++.+||++..|||||||+.||+|+| +++||++..... +... .|.. ...
T Consensus 149 l~~~~~~~~~~~--~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P~~~i~~Wfds~~~~---~~~~-~~~~---~~~ 219 (312)
T cd00668 149 FKEKLLKALRRG--KIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLPEDVFDVWFDSGIGP---LGSL-GYPE---EKE 219 (312)
T ss_pred HHHHHHHHHhcC--CcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCCcccccchhhccHHH---HHHc-CCCc---cch
Confidence 467899999854 4899999999999999977999999999999999 467777653210 0000 0000 000
Q ss_pred HHHHhhhccccccCCccccccccccccccccCCcceeeecCCccccccccC-cCceEEEcceeeCCCCceeeeccCCccC
Q psy944 79 AEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANG-IHSEVFLHPIVRDAHGRKMSKSLGNVID 157 (689)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~-~~k~v~~hg~~~~~~g~KmSKS~gn~~~ 157 (689)
....++ + .| -...|.++.++|...|++.....+.. +|+++++||++++.+|+|||||+||+|+
T Consensus 220 ----~~~~~~--~--------~d--i~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v~ 283 (312)
T cd00668 220 ----WFKDSY--P--------AD--WHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVID 283 (312)
T ss_pred ----hhhhcC--C--------ce--EEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCcCC
Confidence 000000 0 01 13377888888888888876554444 7999999999997777999999999999
Q ss_pred chhhhhcCChhhHHHHHhhcCchh
Q psy944 158 PLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 158 ~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
|.+++++||+|++||||++.++..
T Consensus 284 ~~d~~~~~~~da~R~~l~~~~~~~ 307 (312)
T cd00668 284 PSDVVEKYGADALRYYLTSLAPYG 307 (312)
T ss_pred HHHHHHHcCcHHHHHHHHhcCCcc
Confidence 999999999999999999887654
No 78
>KOG0435|consensus
Probab=99.88 E-value=2.9e-24 Score=232.28 Aligned_cols=148 Identities=22% Similarity=0.328 Sum_probs=110.1
Q ss_pred CCCeecccCCccccccceEEEeCCCCCCCCCc-----ccccc-eeecCCChHHHHHHhhhccccccCCcccccccccccc
Q psy944 32 NRDWCISRQLWWGHRIPAYYVSFNDPAKKPKN-----VTEYE-LWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDT 105 (689)
Q Consensus 32 l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~ 105 (689)
++||.|||||+||+|||+++|..|+++..|++ +++.+ ....+++... ....-.+.||+|+...+|++|||||
T Consensus 419 LkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~--~~e~vn~~cP~cg~pAkRETDTMDT 496 (876)
T KOG0435|consen 419 LKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSK--ADEWVNVDCPRCGEPAKRETDTMDT 496 (876)
T ss_pred hhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccc--hhhheeccCccCCCcccccccccch
Confidence 69999999999999999999999986654442 22222 1222322211 1223345678899999999999999
Q ss_pred ccccCCcceeeec----------------CCcccc--------------------------ccccCcCceEEEcceeeCC
Q psy944 106 WFSSGLFPFSVFG----------------WPDKQR--------------------------LSANGIHSEVFLHPIVRDA 143 (689)
Q Consensus 106 Wf~S~~~~~~~~~----------------wp~~~~--------------------------l~~~~~~k~v~~hg~~~~~ 143 (689)
|+||+||+|..+. =|++.. .....+|++++.+|++...
T Consensus 497 FvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~ 576 (876)
T KOG0435|consen 497 FVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGK 576 (876)
T ss_pred hhccceeeEeecCCCCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccce
Confidence 9999999999873 133321 1123468888888888642
Q ss_pred -------------------------------------CCceeeeccCCccCchhhhhcCChhhHHHHHhhcCchh
Q psy944 144 -------------------------------------HGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 144 -------------------------------------~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
--+|||||++|+++|.+++.+||+|++|+|+|.++|+.
T Consensus 577 tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~ 651 (876)
T KOG0435|consen 577 TFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPR 651 (876)
T ss_pred EEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcc
Confidence 12599999999999999999999999999999988864
No 79
>PLN02224 methionine-tRNA ligase
Probab=99.88 E-value=1.1e-23 Score=239.41 Aligned_cols=161 Identities=21% Similarity=0.324 Sum_probs=123.8
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHcc-CCCeecccCC-ccccccc-----eEEEeCCCCCCCCCcccccceeecC
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLEN-NRDWCISRQL-WWGHRIP-----AYYVSFNDPAKKPKNVTEYELWVSG 73 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~-l~DW~ISRqr-~WG~pIP-----~~y~~~~~~~~~~~~~~~~~~~~~~ 73 (689)
+++++++++++++-.+.|+..++.+.+||++ |+||||||++ .||+|+| ++|||+|+..+ +++....+...
T Consensus 233 ~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~---Yls~~~~~~~~ 309 (616)
T PLN02224 233 YQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLG---YISALTEDNKQ 309 (616)
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHH---HHHHhcccccc
Confidence 4788999998776667799999999999998 9999999986 7999999 58999887553 22221111100
Q ss_pred CChHHHHHHhhhccccccCCccccccccccccccccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeeeccC
Q psy944 74 RSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSLG 153 (689)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSKS~g 153 (689)
.+.. .....+| ...-+++|+++.+||++.||+.++..+..+|++|++||+++ .+|+|||||+|
T Consensus 310 ~~~~----~~~~~~w------------~~~v~~iGKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~l~-~eG~KMSKS~G 372 (616)
T PLN02224 310 QNLE----TAVSFGW------------PASLHLIGKDILRFHAVYWPAMLMSAGLELPKMVFGHGFLT-KDGMKMGKSLG 372 (616)
T ss_pred cccc----hhhccCC------------CcceEEEeecccccHHHHHHHHHHHCCCCCCcEEEecccEe-cCCccccccCC
Confidence 0000 0000011 11236799999999999999986555667899999999986 89999999999
Q ss_pred CccCchhhhhcCChhhHHHHHhhcCchh
Q psy944 154 NVIDPLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 154 n~~~~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
|+|+|.+++++||+|++||||++.++..
T Consensus 373 N~i~p~e~l~~ygaD~~R~yLl~~~p~~ 400 (616)
T PLN02224 373 NTLEPFELVQKFGPDAVRYFFLREVEFG 400 (616)
T ss_pred ccCCHHHHHHHcCcHHHHHHHHhcCCCc
Confidence 9999999999999999999999886643
No 80
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.88 E-value=1.6e-23 Score=238.67 Aligned_cols=162 Identities=24% Similarity=0.382 Sum_probs=121.1
Q ss_pred CHHHHHHHHhcCC-ceEEccccHHHHHHHHcc-CCCeecccCCc-cccccce-----EEEeCCCCCCCCCcccccceeec
Q psy944 1 MAEKAVQAVKTGE-LKIIPDHHTKTWYQWLEN-NRDWCISRQLW-WGHRIPA-----YYVSFNDPAKKPKNVTEYELWVS 72 (689)
Q Consensus 1 ~~~~~~e~i~~~~-~~~~P~~~~~~~~~~l~~-l~DW~ISRqr~-WG~pIP~-----~y~~~~~~~~~~~~~~~~~~~~~ 72 (689)
+++++++++++++ ..+.|+..++.+.+||++ ++|||||||+. ||+|||. +|||+++..+ +++.. .+..
T Consensus 191 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~~~~~~yvW~da~~~---y~~~~-~~~~ 266 (530)
T TIGR00398 191 FEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPNDPNKVVYVWFDALIG---YISSL-GILS 266 (530)
T ss_pred HHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCCCCcEEEEeecchHH---hHhhh-cccc
Confidence 5789999998653 445688888999999999 99999999999 9999994 6888776432 11111 0000
Q ss_pred CCChHHHHHHhhhccccccCCccccccccccccccccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeeecc
Q psy944 73 GRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSL 152 (689)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSKS~ 152 (689)
+.. .....++... ....+-.++|+++.+||++.||+.++..+..+|+++++||++++. |+|||||+
T Consensus 267 ~~~------~~~~~~w~~~-------~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g~v~~~-g~KmSKS~ 332 (530)
T TIGR00398 267 GDT------EDWKKWWNND-------EDAELIHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLTVE-GGKMSKSL 332 (530)
T ss_pred CCh------hhHHHhCCCC-------CCceEEEEEecccchhHHHHHHHHHHhCCCCCCCEEEeeccEEEC-CceecccC
Confidence 000 0011121100 012345679999999999999998666666679999999999955 99999999
Q ss_pred CCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 153 GNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 153 gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
||+|+|.+++++||+|++|||+++.++.
T Consensus 333 Gn~i~~~d~i~~~g~D~lR~~l~~~~~~ 360 (530)
T TIGR00398 333 GNVVDPSDLLARFGADILRYYLLKERPL 360 (530)
T ss_pred CceecHHHHHHHcCchHHHHHHhhCCCC
Confidence 9999999999999999999999987653
No 81
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.88 E-value=2.4e-23 Score=221.87 Aligned_cols=161 Identities=22% Similarity=0.368 Sum_probs=122.8
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHcc-CCCeecccCC-ccccccce-----EEEeCCCCCCCCCcccccceeecC
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLEN-NRDWCISRQL-WWGHRIPA-----YYVSFNDPAKKPKNVTEYELWVSG 73 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~-l~DW~ISRqr-~WG~pIP~-----~y~~~~~~~~~~~~~~~~~~~~~~ 73 (689)
+++++++++++++..+.|+..++.+.+||++ ++|||||||. .||+|+|. +|+|+++..+ +++....+..
T Consensus 147 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~~---y~~~~~~~~~- 222 (319)
T cd00814 147 FQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIG---YISATGYYNE- 222 (319)
T ss_pred HHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEehhhHHH---HHHHcccccc-
Confidence 4688899999877668999999999999998 9999999999 99999994 6777665332 1110000000
Q ss_pred CChHHHHHHhhhccccccCCccccccccccccccccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeeeccC
Q psy944 74 RSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSLG 153 (689)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSKS~g 153 (689)
......+ +........+.+|+++.+||++.||+.++..+..+|+.+++||+++ .+|+|||||+|
T Consensus 223 -------~~~~~~~--------~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~~-~~g~kmSkS~g 286 (319)
T cd00814 223 -------EWGNSWW--------WKDGWPELVHFIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYLT-VEGKKMSKSRG 286 (319)
T ss_pred -------cccchhh--------hhcCCCceEEEEeechhhhhHHHHHHHHHhCCCCCCcEeeeeeeEE-ECCeeecccCC
Confidence 0000000 1111122346799999999999999986666667799999999998 67999999999
Q ss_pred CccCchhhhhcCChhhHHHHHhhcCchh
Q psy944 154 NVIDPLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 154 n~~~~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
|+|+|.+++++||+|++||||+..+|..
T Consensus 287 n~i~~~~~l~~~~~d~~R~~l~~~~~~~ 314 (319)
T cd00814 287 NVVDPDDLLERYGADALRYYLLRERPEG 314 (319)
T ss_pred cccCHHHHHHHcCchHHHHHHHhcCCCC
Confidence 9999999999999999999999887753
No 82
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.87 E-value=9.8e-23 Score=196.66 Aligned_cols=135 Identities=33% Similarity=0.586 Sum_probs=103.7
Q ss_pred CCcccceeeeEeEEeecCCceEEEEeccHHHHhhcccccccCccccc---------------------------------
Q psy944 476 NPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERY--------------------------------- 522 (689)
Q Consensus 476 ~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~--------------------------------- 522 (689)
|||+......+.|++..+++.+.|+|+|+++++|.+++++.|++..-
T Consensus 2 NWIGkS~G~~i~F~i~~~~~~i~vFTTrpdTifGvtfials~~H~lv~~l~~~~~~l~~fi~~~~~~~~~~~~~~~~~k~ 81 (185)
T PF13603_consen 2 NWIGKSEGAEIDFKIKGSNEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLAENNPELQEFIEKCKKIKNSERNKDFKEKE 81 (185)
T ss_dssp HHH-EEEEEEEEEEBTTSSCEEEEEES-GGGGGG--EEEEETTSCHHHHCTTTHHHHHHHHHHHHTS-HHHHHHCSSS--
T ss_pred CCcCCcccEEEEEEecCCCCEEEEEECCcchhhCceEEEECCCCHHHHhhhhhhhhHHHHHHHHhcCCHhHhhhhccccc
Confidence 68888888889999988888999999999999999999887765311
Q ss_pred ccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccC----------------Ccc
Q psy944 523 KHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNE----------------EGV 586 (689)
Q Consensus 523 ~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~----------------~G~ 586 (689)
.-+.|..+.||++++++||+.++||.+++|||+||+||+|+.+||++|++||||+..+|.. +|.
T Consensus 82 Gv~tg~~aihP~t~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~ 161 (185)
T PF13603_consen 82 GVFTGLYAIHPLTGKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGI 161 (185)
T ss_dssp EEEEEEEEE-TTTS-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTSS---S--E
T ss_pred cCcCCCEEECCCCCCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEE
Confidence 1247889999999999999999999999999999999999999999999999998887742 377
Q ss_pred cccCCCCCCCCchhhhHHHHHHHhh
Q psy944 587 IIGDYGEFTGMKRFDARTRVTELIS 611 (689)
Q Consensus 587 ~~~~~~~~~G~~v~~a~~~i~~~L~ 611 (689)
|+ ++++|+||+..+|+++|++.|+
T Consensus 162 l~-nS~~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 162 LI-NSGEFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp E--SSGGGTTSBHHHHHHHHHHHHH
T ss_pred EE-eCCCCCCCCHHHHHHHHHHHhC
Confidence 77 6899999999999999999984
No 83
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.87 E-value=7.2e-23 Score=239.21 Aligned_cols=158 Identities=20% Similarity=0.315 Sum_probs=120.6
Q ss_pred CHHHHHHHHhcCCceEEccccHHHH---HHHHcc-CCCeecccCCccccccc-------eEEEeCCCCCCCCCcccccce
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTW---YQWLEN-NRDWCISRQLWWGHRIP-------AYYVSFNDPAKKPKNVTEYEL 69 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~---~~~l~~-l~DW~ISRqr~WG~pIP-------~~y~~~~~~~~~~~~~~~~~~ 69 (689)
++++++++++++. +.|++..+.+ .+||+. ++||||||+..||+|+| ++|||+|++.+ +++....
T Consensus 212 ~~~~L~~~~~~~~--~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~~~~~~v~YVWfDAl~~---Yis~~~~ 286 (801)
T PLN02610 212 LKDKLVEYINETS--VAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIG---YVSITAC 286 (801)
T ss_pred HHHHHHHHHHhCC--CCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCCCCCCcEEEEehhhHHH---HHHHHhh
Confidence 4788999998654 5677766644 489986 99999999999999999 48899887553 2221111
Q ss_pred eecCCChHHHHHHhhhccccccCCccccccccccccccccCCcceeeecCCccccccccC--cCceEEEcceeeCCCCce
Q psy944 70 WVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANG--IHSEVFLHPIVRDAHGRK 147 (689)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~--~~k~v~~hg~~~~~~g~K 147 (689)
| . .+ ...+|.++. .-.+.+++|+++.+||+++||++++..+.. +|++|++|||++ .+|+|
T Consensus 287 ~----~-----~~-~~~~W~~~~-------~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l~-~eG~K 348 (801)
T PLN02610 287 Y----T-----PE-WEKWWKNPE-------NVELYQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLN-YEGGK 348 (801)
T ss_pred h----h-----hH-HHHhcCCcc-------cceEEEEEeeecchhHHHHHHHHHHhCCCCcCCCCEEEeccCEe-cCCce
Confidence 1 0 01 222332110 113457899999999999999996655544 789999999998 89999
Q ss_pred eeeccCCccCchhhhhc-CChhhHHHHHhhcCchh
Q psy944 148 MSKSLGNVIDPLDVVKG-ISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 148 mSKS~gn~~~~~~~~~~-~~~d~~r~~l~~~~~~~ 181 (689)
||||+||+|+|.++++. ||+|++||||++.+++.
T Consensus 349 MSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~ 383 (801)
T PLN02610 349 FSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEV 383 (801)
T ss_pred ecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCC
Confidence 99999999999999996 99999999999988765
No 84
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.8e-23 Score=237.99 Aligned_cols=147 Identities=23% Similarity=0.309 Sum_probs=108.0
Q ss_pred CCCeecccCCccccccceEEEeCCCCCCCCC-----cccccceeecCCChHHHHHHhhhccccccCCccccccccccccc
Q psy944 32 NRDWCISRQLWWGHRIPAYYVSFNDPAKKPK-----NVTEYELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTW 106 (689)
Q Consensus 32 l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~W 106 (689)
++||.+||||+||.|||+++|..|+....|+ .++.... ..+.+ .++.....|......+.+..|+++|||+|
T Consensus 419 lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~-~~gt~--~pL~~~~~W~~~s~~~s~~~ret~Tm~~~ 495 (814)
T COG0495 419 LRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVR-GLGTG--SPLPWDEEWVIESLPDSTAYRETDTMDTF 495 (814)
T ss_pred cchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccc-cCCCC--CCCCCCcceEEEecCCCceeeehhhhhHh
Confidence 6999999999999999999999887443322 1211111 11111 01111223333334457899999999999
Q ss_pred cccCCcceeee-----------------cCCccccccccC--------------------------cCceEEEcceeeCC
Q psy944 107 FSSGLFPFSVF-----------------GWPDKQRLSANG--------------------------IHSEVFLHPIVRDA 143 (689)
Q Consensus 107 f~S~~~~~~~~-----------------~wp~~~~l~~~~--------------------------~~k~v~~hg~~~~~ 143 (689)
++|+|+++..+ ++|.+.+..|.+ +|++++++||++..
T Consensus 496 ~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~ 575 (814)
T COG0495 496 IDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGE 575 (814)
T ss_pred cccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEec
Confidence 99998865443 457776544433 36779999999955
Q ss_pred CCceeeeccCCccCchhhhhcCChhhHHHHHhhcCchh
Q psy944 144 HGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 144 ~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
+|+|||||+||+|+|++++++||+|++|+|+++++|++
T Consensus 576 ~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~ 613 (814)
T COG0495 576 EGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPE 613 (814)
T ss_pred CCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChh
Confidence 89999999999999999999999999999999999987
No 85
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.83 E-value=2.8e-22 Score=218.12 Aligned_cols=165 Identities=21% Similarity=0.323 Sum_probs=112.5
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHcc-CCCeecccCCccccccc-----eEEEeCCCCCCCCCcccccceeecCC
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLEN-NRDWCISRQLWWGHRIP-----AYYVSFNDPAKKPKNVTEYELWVSGR 74 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~-l~DW~ISRqr~WG~pIP-----~~y~~~~~~~~~~~~~~~~~~~~~~~ 74 (689)
+++.+.+++++++.. .|+..++.+.+||++ ++||||||...||+|+| ++|||+++... +++....+....
T Consensus 191 ~~~~L~~~l~~~~~~-~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~~~~~~iyVWfdal~~---Ylt~~~~~~~~~ 266 (391)
T PF09334_consen 191 FRDQLREWLESNPDF-PPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPGDPGQVIYVWFDALIG---YLTATGYLAEKR 266 (391)
T ss_dssp GHHHHHHHHHHSTTS-SHHHHHHHHHHHHHT----EE-ECTTSSSEEETTEEEEEE-HHHHHHTH---HHHTTTTTHHHT
T ss_pred hHHHHHHHHhcCCCC-CChhHHHHHHHHhhcccCceeeecCCCCcceeeccCCceEEEcchHHHH---HHHHhccccccc
Confidence 467889999876543 667777888899998 99999999999999999 57888775332 222111111000
Q ss_pred ChHHHHHHhhhccccccCCccccccccccccccccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeeeccCC
Q psy944 75 SKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSLGN 154 (689)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSKS~gn 154 (689)
... .....+|.. .+.....++||+++.+||+++||+.++..+..+|+++++|||++ .+|+|||||+||
T Consensus 267 ~~~----~~~~~~w~~-------~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~~lP~~i~~~~~~~-~~g~K~SkS~gn 334 (391)
T PF09334_consen 267 GDP----EEFKKWWAN-------DSDVEIVHFIGKDIIRFHAIYWPAMLLAAGLPLPRRIVVHGFLT-LDGEKMSKSRGN 334 (391)
T ss_dssp TTS----HHHHHHHCS-------T--SEEEEEEEGGGHHHHHTHHHHHHHHCTB---SEEEEE--EE-ETTCCEETTTTE
T ss_pred ccc----chhhhhccc-------cCCceEEEEEccchhHHHHHHhHHHHhcccCCCCCEEEeeeeEE-ECCeeccccCCc
Confidence 000 011111100 01223457799999999999999997776777899999999999 899999999999
Q ss_pred ccCchhhhhcCChhhHHHHHhhcCchh
Q psy944 155 VIDPLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 155 ~~~~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
+|+|.+++++||+|++||||+..+|..
T Consensus 335 ~i~~~~~~~~~~~D~~R~~L~~~~~~~ 361 (391)
T PF09334_consen 335 VIWPDDLLEEYGADALRYYLAREGPEG 361 (391)
T ss_dssp SSBHHHHHHHH-HHHHHHHHHHHSSTT
T ss_pred ccCHHHHHHhCChHHHHHHHHHhcCCC
Confidence 999999999999999999999987754
No 86
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.82 E-value=5.3e-21 Score=217.41 Aligned_cols=160 Identities=26% Similarity=0.413 Sum_probs=116.7
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHcc-CCCeeccc-CCccccccce-----EEEeCCCCCCCCCcccccceeecC
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLEN-NRDWCISR-QLWWGHRIPA-----YYVSFNDPAKKPKNVTEYELWVSG 73 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~-l~DW~ISR-qr~WG~pIP~-----~y~~~~~~~~~~~~~~~~~~~~~~ 73 (689)
+++++.++++++...+.|+..++++.+|+++ ++|||||| |+.||+|||. +|+|++.... ..+.. .+
T Consensus 166 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~---y~s~~-~~--- 238 (511)
T PRK11893 166 YQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTN---YLTAL-GY--- 238 (511)
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHH---HHhHh-cc---
Confidence 4678899998654456799999999999996 99999999 8999999995 4566654221 00000 00
Q ss_pred CChHHHHHHhhhccccccCCccccccccccccccccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeeeccC
Q psy944 74 RSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSLG 153 (689)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSKS~g 153 (689)
+........... .+.. .|+ ...|.++.++|...||+.....+..+|+.+++||+++ .+|+|||||+|
T Consensus 239 p~~~~~~~~~~~---------~~~~-~D~--~~~G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~-~~G~KMSKS~G 305 (511)
T PRK11893 239 PDDEELLAELFN---------KYWP-ADV--HLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLT-LDGEKMSKSLG 305 (511)
T ss_pred ccccccchhHHH---------hcCC-Ccc--eEecccccccchhHHHHHHHhCCCCCCCEEEeeccEE-ECCeeecccCC
Confidence 000000000000 1111 122 5589999999999999986655667789999999999 58999999999
Q ss_pred CccCchhhhhcCChhhHHHHHhhcCch
Q psy944 154 NVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 154 n~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
|+|+|.+++++||+|++||||++.++.
T Consensus 306 N~i~~~dll~~~g~DalR~~ll~~~~~ 332 (511)
T PRK11893 306 NVIDPFDLVDEYGVDAVRYFLLREIPF 332 (511)
T ss_pred cEEcHHHHHHHcCcHHHHHHHHhcCCC
Confidence 999999999999999999999987553
No 87
>KOG0436|consensus
Probab=99.81 E-value=1e-19 Score=187.84 Aligned_cols=143 Identities=25% Similarity=0.371 Sum_probs=130.1
Q ss_pred CCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHH
Q psy944 231 KNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGRE 310 (689)
Q Consensus 231 ~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~ 310 (689)
.++.+.|++|.|.-|+|..+||||+++.+++|+++||+|++|..|.|..|+|.||+.|+.+++. .|..+.
T Consensus 35 ~~~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaat-----nG~~P~----- 104 (578)
T KOG0436|consen 35 VDEGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAAT-----NGRNPP----- 104 (578)
T ss_pred ccCCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhh-----cCCChH-----
Confidence 3455699999999999999999999999999999999999999999999999999999988764 344443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCce
Q psy944 311 KFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEV 390 (689)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev 390 (689)
+.++...+.+++.++.+|+.++ ++.+|+||.+...|++++..+.++|+||++.+..+||.+|+|++.+.+|
T Consensus 105 -------e~cDr~s~~f~qL~k~~gi~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv 175 (578)
T KOG0436|consen 105 -------ELCDRISQSFRQLWKDAGIAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKV 175 (578)
T ss_pred -------HHHhhhhHHHHHHHHHhCcchh--heeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHH
Confidence 4577777888999999999988 9999999999999999999999999999999999999999999999988
Q ss_pred ee
Q psy944 391 DK 392 (689)
Q Consensus 391 ~~ 392 (689)
..
T Consensus 176 ~k 177 (578)
T KOG0436|consen 176 LK 177 (578)
T ss_pred hc
Confidence 54
No 88
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.70 E-value=2.8e-18 Score=182.46 Aligned_cols=158 Identities=18% Similarity=0.150 Sum_probs=104.5
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccce---EEEeCCCCCCCCCcccccceeecCCChH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPA---YYVSFNDPAKKPKNVTEYELWVSGRSKE 77 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (689)
+++.+++++++ +.+.|+..++.+.+|++ ||||+.||+|+|. ++||++.......++.............
T Consensus 141 ~~~~l~~~l~~--~~~~p~~~~~~~~~~l~------isR~~~wGipvP~~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~ 212 (314)
T cd00812 141 WKEKLLKDLEK--LDGWPEEVRAMQENWIG------CSRQRYWGTPIPWTDTMESLSDSTWYYARYTDAHNLEQPYEGDL 212 (314)
T ss_pred HHHHHHHHHHh--cCcCCHHHHHHHHHHhe------eeeecCCcCCcCcccccccccccHHHHHHHHhcccccCcchhhh
Confidence 46789999985 35799999999999998 9999999999994 5666554221000000000000000000
Q ss_pred HHHHHhhhccccccCCccccccccccccccccCCcceee---ecCCcccccccc---CcCceEEEcceeeCCCCceeeec
Q psy944 78 EAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSV---FGWPDKQRLSAN---GIHSEVFLHPIVRDAHGRKMSKS 151 (689)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~---~~wp~~~~l~~~---~~~k~v~~hg~~~~~~g~KmSKS 151 (689)
....+....++ | . | -...|+++.++|+ ..||+.....+. .+|+++++||+++ .+|+|||||
T Consensus 213 ~~~~~~~~~w~-p-~--------d--i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g~KmSkS 279 (314)
T cd00812 213 EFDREEFEYWY-P-V--------D--IYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKS 279 (314)
T ss_pred hhhHHHHHHhC-C-C--------e--eeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCccccCCc
Confidence 00000111111 0 0 1 1225777777665 567776444443 5689999999998 799999999
Q ss_pred cCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 152 LGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 152 ~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
+||+|+|.++++++|+|++||+|++.++
T Consensus 280 ~Gn~v~~~dll~~~~~Da~R~~ll~~~~ 307 (314)
T cd00812 280 KGNVVTPDEAIKKYGADAARLYILFAAP 307 (314)
T ss_pred CCCCCCHHHHHHHhCcHHHHHHHHhcCC
Confidence 9999999999999999999999998876
No 89
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.65 E-value=6.4e-16 Score=155.15 Aligned_cols=123 Identities=16% Similarity=0.127 Sum_probs=105.3
Q ss_pred eeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHH
Q psy944 237 FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKV 316 (689)
Q Consensus 237 f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~ 316 (689)
.+|-...|||||++||||+|+.+++|+++|++++.|++|.+..++|++|.++...++... .+
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~------------------~~ 63 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE------------------KW 63 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH------------------HH
Confidence 345567899999999999999999999999999999999999999999999988775421 15
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCC
Q psy944 317 WEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSL 381 (689)
Q Consensus 317 ~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~ 381 (689)
+++++.+.+.+.+.+++||+.+| .+..|++. ...+..++..|.++|++|+....+.+|+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~L~i~~d--~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 64 RKLVEESIKADLETYGRLDVRFD--VWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HHHHHHHHHHHHHHHHHhCCcCc--eecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 67888899999999999999988 45556554 889999999999999999988777766533
No 90
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.62 E-value=1.4e-15 Score=169.75 Aligned_cols=127 Identities=18% Similarity=0.172 Sum_probs=104.9
Q ss_pred CCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHH
Q psy944 233 PKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKF 312 (689)
Q Consensus 233 ~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~ 312 (689)
++.+++++ .|+|+|.+||||++++++.|+++||+|+.||+|.|+.|+|++|.+|...+.+ .|.
T Consensus 22 ~~v~~yvc--gPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~-----~g~---------- 84 (463)
T PRK00260 22 GKVKMYVC--GPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANE-----EGE---------- 84 (463)
T ss_pred CcceEEEe--CCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHH-----cCC----------
Confidence 34455555 4667799999999999999999999999999999999999999988776643 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCC
Q psy944 313 IEKVWEWKKEKGDRIYEQMKLMGS-SLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLK 382 (689)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~lGi-~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~ 382 (689)
.|.++++.+.+.+++++++||+ ..||... ++ .|...++.++.+|.++|++|++..+|+||+..-
T Consensus 85 --~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r--~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~ 149 (463)
T PRK00260 85 --SIKELTERYIAAFHEDMDALNVLPPDIEPR--AT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRKF 149 (463)
T ss_pred --CHHHHHHHHHHHHHHHHHHcCCCCCCcccc--cc--ccHHHHHHHHHHHHHCCCEEEecCeEEEecccc
Confidence 2567888999999999999999 5675322 22 478889999999999999999999999998653
No 91
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.56 E-value=1.3e-14 Score=161.50 Aligned_cols=128 Identities=20% Similarity=0.142 Sum_probs=106.2
Q ss_pred CCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHH
Q psy944 233 PKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKF 312 (689)
Q Consensus 233 ~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~ 312 (689)
++-+++++- |||+|.+||||+++++..|+++||+|++||+|.+++|+|++|.+|..++.+ .|..+
T Consensus 20 ~~v~~yvcg--ptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~-----~g~~~-------- 84 (465)
T TIGR00435 20 GKVKMYVCG--PTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARE-----NGESV-------- 84 (465)
T ss_pred CcceEEEec--CccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHH-----cCCCH--------
Confidence 445566654 488889999999999999999999999999999999999999998776643 24433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeec-ccccccCCCC
Q psy944 313 IEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSE-RLVHWSCSLK 382 (689)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~-~~v~w~~~~~ 382 (689)
.++++.+.+.+.+++++|||..|+-.. .++ .|...+.+++.+|.++|++|.+. ..|+||+.+-
T Consensus 85 ----~e~a~~~~~~f~~dl~~LgI~~d~~~~-raT--~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~ 148 (465)
T TIGR00435 85 ----YEVSERFIEAYFEDMKALNVLPPDLEP-RAT--EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKF 148 (465)
T ss_pred ----HHHHHHHHHHHHHHHHHhCCCCCcCCc-ccc--ccHHHHHHHHHHHHHCCCEEEecCCcEEEecccc
Confidence 355788889999999999999985322 222 78889999999999999999998 9999998764
No 92
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.53 E-value=2.9e-14 Score=161.29 Aligned_cols=126 Identities=21% Similarity=0.196 Sum_probs=107.4
Q ss_pred CCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHH
Q psy944 233 PKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKF 312 (689)
Q Consensus 233 ~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~ 312 (689)
..++++|..+.|||+|++|+||+|+.+++|+++|++++.|++|.+..|+|++|.++...+....
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~---------------- 172 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLE---------------- 172 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHH----------------
Confidence 4568999999999999999999999999999999999999999999999999999877664321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCee-eecccccc
Q psy944 313 IEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIY-RSERLVHW 377 (689)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy-~~~~~v~w 377 (689)
....++++.+.+.+++++++||+.+| .++.+.+..+...+++++.+|.++|++| +....++.
T Consensus 173 -~~~~~~~~~~~~~~~~~l~~LgI~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~ 235 (507)
T PRK01611 173 -LLWRKAVDISLDEIKEDLDRLGVHFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWV 235 (507)
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCeee--EEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEE
Confidence 12346778889999999999999998 5566777777889999999999999999 65544433
No 93
>KOG0437|consensus
Probab=99.49 E-value=3.5e-15 Score=163.44 Aligned_cols=167 Identities=17% Similarity=0.286 Sum_probs=122.7
Q ss_pred HHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHHH
Q psy944 2 AEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAEQ 81 (689)
Q Consensus 2 ~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (689)
+..+.++++ +++.+-...|+-+...|+|+..|++||..+.||+|| | ++..+.++++++..|...+...+.+.
T Consensus 537 Kk~a~~cLe--~l~~f~dEtR~~fE~tLdWL~~wacsRsyGLGTrlP----W--D~qyLvESLSDSTIYmAyYTvaHll~ 608 (1080)
T KOG0437|consen 537 KKQAKECLE--NLNTFSDETRNGFEDTLDWLGQWACSRSYGLGTRLP----W--DEQYLVESLSDSTIYMAYYTVAHLLH 608 (1080)
T ss_pred HHHHHHHHh--hhhccCHHHHHHHHHHHHHHHhhhhhccccCCCCCC----C--cHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 356777888 666666668999999999999999999999999999 3 33445678888877777777776665
Q ss_pred HhhhccccccCCcccccc--cc-ccccccccCCcceee---------------ecCCccccccccCc-------------
Q psy944 82 KAISKFNVTQADISLRQD--ED-VLDTWFSSGLFPFSV---------------FGWPDKQRLSANGI------------- 130 (689)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~--~d-v~D~Wf~S~~~~~~~---------------~~wp~~~~l~~~~~------------- 130 (689)
.... +....+..+..+ +| |.|+-|-...++-.+ ++||.+++.+|.++
T Consensus 609 ~d~~--g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHv 686 (1080)
T KOG0437|consen 609 RDLY--GKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHV 686 (1080)
T ss_pred Hhhc--cCCcccCCCChhhcCHHHHHHhhccCCCCcCCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehh
Confidence 4222 211221222222 22 444334333332111 26899988888774
Q ss_pred --------CceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 131 --------HSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 131 --------~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
||.|..+|+++ .+++|||||.||++++++.+++||+|+.|+.|..+|.
T Consensus 687 Al~~~k~WPkgiraNGHLm-LNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD 742 (1080)
T KOG0437|consen 687 ALFPEKKWPKGIRANGHLM-LNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGD 742 (1080)
T ss_pred hhcccccCccceeeCceEE-ecchhhccccCCeeeHHHHHHHhCccceeeeeecccC
Confidence 79999999999 8999999999999999999999999999999987754
No 94
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.49 E-value=1.5e-13 Score=147.88 Aligned_cols=123 Identities=16% Similarity=0.119 Sum_probs=104.4
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHH
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEK 315 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~ 315 (689)
+++++-|.|| +++||||+++++..|+++||+|+.|++|.+..|+|+||.+|..++++ .|.++
T Consensus 11 ~~YvCGpTvY--~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~-----~G~~~----------- 72 (384)
T PRK12418 11 TMYVCGITPY--DATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAAR-----DGVDW----------- 72 (384)
T ss_pred EEEecCCCCC--CCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHH-----cCCCH-----------
Confidence 5677766666 99999999999999999999999999999999999999999888764 34443
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-ccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecc----cccccCCC
Q psy944 316 VWEWKKEKGDRIYEQMKLMGS-SLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSER----LVHWSCSL 381 (689)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~lGi-~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~----~v~w~~~~ 381 (689)
.++++.+.+.+.+.+++||| ..| .+.+|++. .+.++.++.+|.++|++|+... .|+++...
T Consensus 73 -~e~a~~~~~~f~~d~~~Lni~~~~--~~~raTe~--i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~ 138 (384)
T PRK12418 73 -RDLAEREIALFREDMEALRVLPPR--DYVGAVES--IPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA 138 (384)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCCCC--ccccCCCC--HHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCc
Confidence 35678888999999999997 444 66667664 8899999999999999999988 79988543
No 95
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.49 E-value=1.2e-13 Score=149.15 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=103.3
Q ss_pred CCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHH
Q psy944 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFI 313 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~ 313 (689)
+=+++++-|.|| +.+||||+++++..|+++||+|+.|++|.|..|+|+||-+|..++++ .|.++
T Consensus 36 ~v~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~-----~g~t~--------- 99 (411)
T TIGR03447 36 EAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAER-----DGVDW--------- 99 (411)
T ss_pred cceEEEeCCccC--CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHH-----cCCCH---------
Confidence 445777777777 89999999999999999999999999999999999999999887754 34443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc-cccCCccccCChhhHHHHHHHHHHHHHcCCeeeecc----cccccC
Q psy944 314 EKVWEWKKEKGDRIYEQMKLMGSS-LDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSER----LVHWSC 379 (689)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~lGi~-~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~----~v~w~~ 379 (689)
.++++.+.+.+.+++++||+. .| .+..|++. ...++.++++|.++|++|+... .|+++.
T Consensus 100 ---~ela~~y~~~f~~d~~~Lni~~~d--~~~RaTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv 163 (411)
T TIGR03447 100 ---RELGTSQIDLFREDMEALRVLPPR--DYIGAVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSI 163 (411)
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCCCC--cccCCCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEec
Confidence 356788889999999999976 44 55566555 6899999999999999998875 688885
No 96
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.47 E-value=1e-13 Score=138.46 Aligned_cols=95 Identities=16% Similarity=0.062 Sum_probs=80.5
Q ss_pred CCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHH
Q psy944 231 KNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGRE 310 (689)
Q Consensus 231 ~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~ 310 (689)
..++.+++++.|.|| |.+||||++++++.|+++||+||+|++|+++.|+|+||.+|+.++++. |..
T Consensus 17 ~~~~~~~y~~gpt~y--~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~-----g~~------- 82 (213)
T cd00672 17 NPGLVTMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREE-----GLS------- 82 (213)
T ss_pred CCCCceEEEeCCccC--CCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHc-----CCC-------
Confidence 345667888877666 789999999999999999999999999999999999999999888652 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-ccCCcccc
Q psy944 311 KFIEKVWEWKKEKGDRIYEQMKLMGSSL-DWDRACFT 346 (689)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~lGi~~-Dw~~~~~T 346 (689)
++++++.+.+.+++++++||++. | .+.+|
T Consensus 83 -----p~e~~~~~~~~f~~~~~~l~i~~~d--~~~rt 112 (213)
T cd00672 83 -----WKEVADYYTKEFFEDMKALNVLPPD--VVPRV 112 (213)
T ss_pred -----HHHHHHHHHHHHHHHHHHcCCCCCC--cceee
Confidence 35778889999999999999988 5 55555
No 97
>PLN02946 cysteine-tRNA ligase
Probab=99.43 E-value=5.3e-13 Score=149.18 Aligned_cols=120 Identities=11% Similarity=0.067 Sum_probs=105.9
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHH
Q psy944 242 PPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKK 321 (689)
Q Consensus 242 ~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (689)
.-|++.|.+||||+++++..|+++||+++.||+|.|..|+|++|-+|..++++ .|.++ .++++
T Consensus 86 CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~-----~g~~~------------~ela~ 148 (557)
T PLN02946 86 CGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANE-----LGEDP------------ISLSR 148 (557)
T ss_pred eCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHH-----cCCCH------------HHHHH
Confidence 35899999999999999999999999999999999999999999999887754 24433 35688
Q ss_pred HHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCC
Q psy944 322 EKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSL 381 (689)
Q Consensus 322 ~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~ 381 (689)
.+.+.+.+++++||+. + ..+.|...+|...+..++.+|.++|++|.+...|+||...
T Consensus 149 ~y~~~f~~d~~~LnI~-~--p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~ 205 (557)
T PLN02946 149 RYCEEFLSDMAYLHCL-P--PSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK 205 (557)
T ss_pred HHHHHHHHHHHHCCCC-C--CCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc
Confidence 8899999999999987 3 4677888899999999999999999999999999999653
No 98
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.41 E-value=1e-12 Score=145.43 Aligned_cols=125 Identities=12% Similarity=0.074 Sum_probs=105.5
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCC----------CcccccChHHHHHHHHHHHHhccccc
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNP----------GCDHAGIATQVVVEKKLWREEKKTRH 305 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~----------G~D~~Glpie~~~e~~l~~~~~~~~~ 305 (689)
+.-++..-|+|++++||||+++++..|++.||+++.||+|.|.. |.|+||-.|..++++ .|.++
T Consensus 23 ~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~-----~g~~~- 96 (490)
T PRK14536 23 HVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQE-----HGKSV- 96 (490)
T ss_pred ceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHH-----cCCCH-
Confidence 33444556899999999999999999999999999999999997 788888888765543 34443
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCC
Q psy944 306 EIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCS 380 (689)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~ 380 (689)
.++++.+.+.+.+++++||+..+ ..+ +..+.|...++.++.+|.++|++|++...|+||+.
T Consensus 97 -----------~e~a~~~~~~f~~d~~~Lni~~~--~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~ 157 (490)
T PRK14536 97 -----------LEIAAHYTAAFFRDTARLNIERP--SIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIR 157 (490)
T ss_pred -----------HHHHHHHHHHHHHHHHHcCCCCC--cee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCC
Confidence 35678888999999999999886 333 66699999999999999999999999999999973
No 99
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.36 E-value=3.5e-12 Score=143.49 Aligned_cols=124 Identities=18% Similarity=0.102 Sum_probs=105.9
Q ss_pred eecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHH
Q psy944 238 VMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVW 317 (689)
Q Consensus 238 ~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 317 (689)
-++..-|+|.+.+||||+|+++..|+++||+++.||+|.+..|++++|-+|..++++ .|..+ .
T Consensus 250 ~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e-----~G~sp------------~ 312 (699)
T PRK14535 250 RMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAE-----NGETI------------G 312 (699)
T ss_pred EEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHH-----cCCCH------------H
Confidence 344455888899999999999999999999999999999999999999999877754 24443 3
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeec-ccccccCCC
Q psy944 318 EWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSE-RLVHWSCSL 381 (689)
Q Consensus 318 ~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~-~~v~w~~~~ 381 (689)
++++.+.+.+.+++++|||..+ . +.|...+|...+..++.+|.++|++|++. ..|+||..+
T Consensus 313 ela~~y~~~F~~d~~~LnI~~p--~-~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~ 374 (699)
T PRK14535 313 ELTARFIQAMHEDADALGVLRP--D-IEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE 374 (699)
T ss_pred HHHHHHHHHHHHHHHHcCCCCC--c-EeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc
Confidence 5678888999999999999888 3 46677899999999999999999999874 379999764
No 100
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.35 E-value=1e-12 Score=140.01 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=97.3
Q ss_pred CCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccc--------cChHHHHHHHHHHHHhccccc
Q psy944 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHA--------GIATQVVVEKKLWREEKKTRH 305 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~--------Glpie~~~e~~l~~~~~~~~~ 305 (689)
+++++|+.|++ |||.+||||++..+..|+++||+|++|++|.+++|+|+| |+|.+ +++. .|....
T Consensus 18 ~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~--~~~~----~G~pi~ 90 (353)
T cd00674 18 KEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES--YEQY----IGMPLS 90 (353)
T ss_pred CCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH--HHHh----cCccch
Confidence 46799999985 999999999999999999999999999999999999999 45443 2232 344433
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCC-hhhHHHHHHHHHHHHHcCCeee
Q psy944 306 EIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMD-PKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d-~~~~~~v~~~f~~L~~kGliy~ 370 (689)
.+.... ..|.+|++++...+++.|.+||+++| ++.|++ ...-.+.+.++..|.+++.|..
T Consensus 91 ~ip~p~--g~~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~~ 151 (353)
T cd00674 91 SVPDPF--GCCESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIMA 151 (353)
T ss_pred hchhhc--CCCHHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHHH
Confidence 332221 33668999999999999999999998 344444 4444788888999999988754
No 101
>KOG1247|consensus
Probab=99.34 E-value=4.2e-13 Score=139.13 Aligned_cols=181 Identities=17% Similarity=0.195 Sum_probs=121.7
Q ss_pred HHHHHHHHhcCC--ceEEccccHHHHHHHHcc-CCCeecccCCccccccc-------eEEEeCCCCCCCCCcccccceee
Q psy944 2 AEKAVQAVKTGE--LKIIPDHHTKTWYQWLEN-NRDWCISRQLWWGHRIP-------AYYVSFNDPAKKPKNVTEYELWV 71 (689)
Q Consensus 2 ~~~~~e~i~~~~--~~~~P~~~~~~~~~~l~~-l~DW~ISRqr~WG~pIP-------~~y~~~~~~~~~~~~~~~~~~~~ 71 (689)
+.++-|+++... ..|- .++++....||+. ++..||||+..||+|+| +||||+|++++ +++
T Consensus 208 ~~~lee~~~~~~~~~~WS-~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPle~fk~KVfYVWFDA~IG---Yls------ 277 (567)
T KOG1247|consen 208 EPRLEEWLRRTLVEGDWS-QNAQNITRSWLKDGLKPRCITRDLKWGTPVPLEKFKDKVFYVWFDAPIG---YLS------ 277 (567)
T ss_pred HHHHHHHHHhccccCCCc-cchHHHHHHHHHccccccccccccccCCCcChhhhcccEEEEEEcCcce---EEE------
Confidence 456667775432 2343 3467888899997 99999999999999999 59999999876 222
Q ss_pred cCCChHHHHHHhhhccccccCCccccccccccccccccCCcceeeecCCccccccccC----cCceEEEcceeeCCCCce
Q psy944 72 SGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANG----IHSEVFLHPIVRDAHGRK 147 (689)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~----~~k~v~~hg~~~~~~g~K 147 (689)
-. .....+ +..||..+..+ .+..|++++..|||++..|.+ +.|.+ +-+++....++- -+..|
T Consensus 278 -it--~~yt~e-w~kWwknpE~v-------~LyqFmgKDNVpFHtviFP~s--~lgt~en~t~v~~l~aTeYLn-yE~gK 343 (567)
T KOG1247|consen 278 -IT--KNYTDE-WEKWWKNPENV-------ELYQFMGKDNVPFHTVIFPCS--QLGTEENYTVVHHLSATEYLN-YEDGK 343 (567)
T ss_pred -ee--hhhhHH-HHHHhcCHhhh-------hHHHHhccCCCcceeeecchh--hhcCCCCchhheeechhhhhc-cccCc
Confidence 11 111222 33333333222 356789999999999999987 44433 246666666664 78899
Q ss_pred eeeccCCccCchhhhh-cCChhhHHHHHhhcCchhHHHHHhhhccccCCCCCCCCCCCCc
Q psy944 148 MSKSLGNVIDPLDVVK-GISLAGLQGRLLQDSNLEAAERQRAADGQKRDYPQGIPECGTD 206 (689)
Q Consensus 148 mSKS~gn~~~~~~~~~-~~~~d~~r~~l~~~~~~~~~~~~~a~~~~~k~l~~~l~~~~~~ 206 (689)
.|||+|-.|.-.++.+ +.+++..|||||...|..++-.....+-..+.-..-|.++|.|
T Consensus 344 FSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNF 403 (567)
T KOG1247|consen 344 FSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNF 403 (567)
T ss_pred ccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHH
Confidence 9999999988877766 5899999999999888664444433333333323333343333
No 102
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.31 E-value=6.3e-12 Score=144.71 Aligned_cols=125 Identities=17% Similarity=0.166 Sum_probs=104.7
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHH-hcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHH
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNR-MKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIE 314 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~r-m~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~ 314 (689)
.+|++.|-+| +.+||||||+++..|++.||++ +.||+|.|.+|++++|-.|..++++ .|...
T Consensus 62 ~~Y~CGPTvY--d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~-----~g~~~---------- 124 (651)
T PTZ00399 62 RWYTCGPTVY--DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRARE-----EKLSI---------- 124 (651)
T ss_pred EEEEeCCCcc--CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHH-----hCCCc----------
Confidence 5677766566 9999999999999999999999 9999999999999999998777654 23220
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCC
Q psy944 315 KVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSL 381 (689)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~ 381 (689)
..++++.+.+.+.+++.+|||..+ ..+.|. .+|...+..++.+|.++|++|.+...|+|+...
T Consensus 125 -~~el~~~~~~~f~~d~~~Lni~~p--~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~ 187 (651)
T PTZ00399 125 -FLELARKWEKEFFEDMKALNVRPP--DVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA 187 (651)
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCCC--ccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEchh
Confidence 235678888999999999999887 444444 789999999999999999999999999998643
No 103
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.29 E-value=1.5e-11 Score=135.70 Aligned_cols=126 Identities=16% Similarity=0.139 Sum_probs=103.4
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEee---------CCCc-ccccChHHHHHHHHHHHHhccccc
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLW---------NPGC-DHAGIATQVVVEKKLWREEKKTRH 305 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~---------~~G~-D~~Glpie~~~e~~l~~~~~~~~~ 305 (689)
+.-++..-|++...+||||+++++..|+++||+++.||+|.+ ..|. |+||-+|..++++ .|.++
T Consensus 21 ~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~-----~g~~~- 94 (481)
T PRK14534 21 DVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARE-----RGLTV- 94 (481)
T ss_pred ceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHH-----cCCCH-
Confidence 334445567888999999999999999999999999999999 5666 4445567766643 34443
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCC
Q psy944 306 EIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSL 381 (689)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~ 381 (689)
.++++.+.+.+.+++++||+..+ ..+.| ..++...++.++.+|.++|++|.....|+||+.+
T Consensus 95 -----------~e~a~~~~~~f~~d~~~Lni~~~--~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~ 156 (481)
T PRK14534 95 -----------YEISRFFTEAFFDDCKKLNIVYP--DKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC 156 (481)
T ss_pred -----------HHHHHHHHHHHHHHHHHcCCCCC--ceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc
Confidence 35678889999999999999888 45555 5799999999999999999999999999999876
No 104
>KOG1247|consensus
Probab=99.18 E-value=1.1e-11 Score=128.77 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=120.9
Q ss_pred CCCCceeecCCCCCCCccchhHHHHH-HHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHH
Q psy944 232 NPKGKFVMVIPPPNVTGTLHLGHALT-NAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGRE 310 (689)
Q Consensus 232 ~~~~~f~i~~~pP~~nG~lHiGH~~~-~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~ 310 (689)
.++..-+|+...||+|..+|+|+..+ ...+|++|||.+.+|++.++..|+|.+|.+++..+- +.|.++.++
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkal-----eeg~tP~el--- 82 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKAL-----EEGLTPQEL--- 82 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHH-----HccCCHHHH---
Confidence 44556789999999999999999876 566999999999999999999999999999987663 346666533
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCce
Q psy944 311 KFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEV 390 (689)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev 390 (689)
++++....+....-++|.+| .+-+|+.+...+.+|.+|.+|+++|++-...-.+.||..|++.|++..|
T Consensus 83 ---------cdKyh~ihk~vy~Wf~IdfD--~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~v 151 (567)
T KOG1247|consen 83 ---------CDKYHGIHKVVYDWFKIDFD--EFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFV 151 (567)
T ss_pred ---------HHhcchhHHHHHHhhccccc--ccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhh
Confidence 55555666666777777777 7778889999999999999999999999999999999999999999998
Q ss_pred ee
Q psy944 391 DK 392 (689)
Q Consensus 391 ~~ 392 (689)
+.
T Consensus 152 eg 153 (567)
T KOG1247|consen 152 EG 153 (567)
T ss_pred hc
Confidence 64
No 105
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=2.4e-10 Score=129.11 Aligned_cols=168 Identities=20% Similarity=0.175 Sum_probs=115.8
Q ss_pred hHHHHHHhhhccccccc-cccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccccc
Q psy944 207 ALRFALAAYMSQGERTG-RRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAG 285 (689)
Q Consensus 207 ~~~~iE~~~~~~W~~~~-~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~G 285 (689)
+..++.....+...+.+ ++-.. .....++.+|-..=|||+|++|+||+||.+++|+++|..+..||+|...+.+++.|
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~G~~-~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G 167 (577)
T COG0018 89 SPEFLAELLLEILEKGDDRYGRS-KLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWG 167 (577)
T ss_pred CHHHHHHHHHHHHHhcccccCcc-ccCCCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHH
Confidence 33455555555555422 22110 12234578888888999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHH--HHHh------------------c----cccc---cc----------CHHHHHHHHHHHHHHHHHHHH
Q psy944 286 IATQVVVEKKL--WREE------------------K----KTRH---EI----------GREKFIEKVWEWKKEKGDRIY 328 (689)
Q Consensus 286 lpie~~~e~~l--~~~~------------------~----~~~~---~~----------~~~~~~~~~~~~~~~~~~~~~ 328 (689)
.++...+-.-. +.+. + ..+. .. +.+.. +.-+++++.....++
T Consensus 168 ~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~-~lw~~~v~~~l~~~k 246 (577)
T COG0018 168 TQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEA-ELWRKFVDLSLEGIK 246 (577)
T ss_pred HHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHH
Confidence 88754331110 0000 0 0010 00 00111 222335667789999
Q ss_pred HHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeee--eccccccc
Q psy944 329 EQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYR--SERLVHWS 378 (689)
Q Consensus 329 ~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~--~~~~v~w~ 378 (689)
+++.+||+.+| .+++..+..+...+..++..|.++|++|+ |...|.|.
T Consensus 247 ~~l~~l~V~fD--~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~ 296 (577)
T COG0018 247 ETLDRLGVKFD--VYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLL 296 (577)
T ss_pred HHHHHhCcccc--eeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehh
Confidence 99999999999 66777778888899999999999999999 45556665
No 106
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.04 E-value=9.6e-10 Score=126.08 Aligned_cols=136 Identities=17% Similarity=0.174 Sum_probs=99.6
Q ss_pred CCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcc--cccc-----
Q psy944 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKK--TRHE----- 306 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~--~~~~----- 306 (689)
.++++|....|||+|++|+||+|+.+++|+++|+.++.||+|.....+++.|.++...+..-....... ....
T Consensus 111 ~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~ 190 (566)
T TIGR00456 111 NKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHG 190 (566)
T ss_pred CCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChHH
Confidence 467899999999999999999999999999999999999999999999999988765442211110000 0000
Q ss_pred c------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHH
Q psy944 307 I------------------------------GREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVT 356 (689)
Q Consensus 307 ~------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~ 356 (689)
+ +.++..+.-+..++...+.+++.+++||+.+| .++...+..|...+.
T Consensus 191 ~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD--~~~~E~e~~~~~~~~ 268 (566)
T TIGR00456 191 LEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFD--SFVWEGESVKNGMVP 268 (566)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcee--eeeccccccccccHH
Confidence 0 00111111123345667889999999999999 445455566777889
Q ss_pred HHHHHHHHcCCeeee
Q psy944 357 EAFVILHEAGDIYRS 371 (689)
Q Consensus 357 ~~f~~L~~kGliy~~ 371 (689)
.++.+|.++|++|.+
T Consensus 269 ~v~~~L~~~g~~~~~ 283 (566)
T TIGR00456 269 KVLEDLKEKGLVVED 283 (566)
T ss_pred HHHHHHHHCCCEEEc
Confidence 999999999999976
No 107
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.02 E-value=1.2e-10 Score=131.08 Aligned_cols=142 Identities=18% Similarity=0.125 Sum_probs=98.8
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccccc--------ChHHHHHHHHHHHHhcccccc
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAG--------IATQVVVEKKLWREEKKTRHE 306 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~G--------lpie~~~e~~l~~~~~~~~~~ 306 (689)
+.++|..|+ +|||.+||||++..+.+|+++|++|+.|++|.+.+|+|+|| +|....+++.+ |.....
T Consensus 23 ~~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~----G~pl~~ 97 (510)
T PRK00750 23 PPVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYL----GKPLTE 97 (510)
T ss_pred CcEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhc----Cccccc
Confidence 458888888 69999999999999999999999999999999999999998 56532333333 333222
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhH-HHHHHHHHHHHHcCCeee------ec-c-----
Q psy944 307 IGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLS-RAVTEAFVILHEAGDIYR------SE-R----- 373 (689)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~-~~v~~~f~~L~~kGliy~------~~-~----- 373 (689)
... .+ ..+.+|++++...+++.+.++||.+| .+.+++...+ .+.+.+...|.+++.|.. +. +
T Consensus 98 ~p~-p~-G~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~ 172 (510)
T PRK00750 98 IPD-PF-GCHESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYS 172 (510)
T ss_pred CCC-CC-CCchHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCee
Confidence 211 11 11578999999999999999999998 3334432222 445555555556655533 21 1
Q ss_pred -cccccCCCCcccC
Q psy944 374 -LVHWSCSLKSAIS 386 (689)
Q Consensus 374 -~v~w~~~~~t~ls 386 (689)
-.+.|+.|+..+.
T Consensus 173 P~~pic~~cg~~~~ 186 (510)
T PRK00750 173 PFLPICPKCGKVLT 186 (510)
T ss_pred eeeeeCCCCCccce
Confidence 2456778887764
No 108
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.97 E-value=8.6e-10 Score=103.76 Aligned_cols=76 Identities=22% Similarity=0.152 Sum_probs=63.2
Q ss_pred cCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHH
Q psy944 240 VIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEW 319 (689)
Q Consensus 240 ~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~ 319 (689)
+.+.|||||.+|+||+++.++.|+++|++|++|++|.+..|+|++|.++...+.+. +.. +++|
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~-----~~~------------~~~~ 64 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK-----GEN------------AKAF 64 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc-----CCC------------HHHH
Confidence 45789999999999999999999999999999999999999999999988766432 111 3456
Q ss_pred HHHHHHHHHHHHH
Q psy944 320 KKEKGDRIYEQMK 332 (689)
Q Consensus 320 ~~~~~~~~~~~l~ 332 (689)
++.+.+.++++++
T Consensus 65 ~~~~~~~~~~~~~ 77 (143)
T cd00802 65 VERWIERIKEDVE 77 (143)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777776
No 109
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=8.2e-10 Score=119.49 Aligned_cols=73 Identities=27% Similarity=0.279 Sum_probs=59.9
Q ss_pred CcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc---Cchh-HHHHHhhhccccCCCCCCCC
Q psy944 129 GIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD---SNLE-AAERQRAADGQKRDYPQGIP 201 (689)
Q Consensus 129 ~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~---~~~~-~~~~~~a~~~~~k~l~~~l~ 201 (689)
..+-+..+|.-.+..+|+|||||+||++++.+++++|+++.+||+||++ +|++ +.+.++.++...+++.+.+.
T Consensus 250 ~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~rl~~~~~ 326 (464)
T COG0215 250 KPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALERLYNALR 326 (464)
T ss_pred CcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHH
Confidence 3567888985555599999999999999999999999999999999987 7888 77777777766666655433
No 110
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.94 E-value=3.8e-09 Score=114.24 Aligned_cols=140 Identities=23% Similarity=0.275 Sum_probs=93.5
Q ss_pred CCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHH--HHHHh--c------
Q psy944 232 NPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKK--LWREE--K------ 301 (689)
Q Consensus 232 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~--l~~~~--~------ 301 (689)
...++.+|-..=|||+|++|+||+|+.+++|+++|..+..||+|......++.|.++...+..- ...+. +
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 96 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKH 96 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccc
Confidence 4556778888889999999999999999999999999999999999999999999875433110 11100 0
Q ss_pred ---------------cc----ccccCHH--HHHHH-------HHH-HHHHHHHHHHHHHHHhccccccCCccccCChhhH
Q psy944 302 ---------------KT----RHEIGRE--KFIEK-------VWE-WKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLS 352 (689)
Q Consensus 302 ---------------~~----~~~~~~~--~~~~~-------~~~-~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~ 352 (689)
.. ...+..+ +.... +.+ |.....+.+++++.++++.+| ..+...+..+.
T Consensus 97 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fD--v~~~E~Es~~~ 174 (354)
T PF00750_consen 97 LEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFD--VWFDESESFYS 174 (354)
T ss_dssp HHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---S--EEEEHCHHHHT
T ss_pred hhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhC--cCcccchhhhh
Confidence 00 0000000 00000 222 333477889999999999999 45555666777
Q ss_pred HHHHHHHHHHHHcCCeeeecc
Q psy944 353 RAVTEAFVILHEAGDIYRSER 373 (689)
Q Consensus 353 ~~v~~~f~~L~~kGliy~~~~ 373 (689)
..+..++.+|.++|++|+...
T Consensus 175 ~~v~~vl~~L~e~g~~~~~dG 195 (354)
T PF00750_consen 175 GKVDEVLERLKEKGLLYESDG 195 (354)
T ss_dssp THHHHHHHHHHCTTTEEEETT
T ss_pred hHHHHHHHHHHhCCcEEecCC
Confidence 889999999999999998653
No 111
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=98.89 E-value=1.1e-08 Score=117.09 Aligned_cols=137 Identities=14% Similarity=0.127 Sum_probs=97.8
Q ss_pred CCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccc-----c-
Q psy944 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHE-----I- 307 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~-----~- 307 (689)
.++.+|-..=|||+|++|+||+|+.+++|+++|..+..||+|......++.|.++...+...........+.. +
T Consensus 112 ~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~ 191 (562)
T PRK12451 112 EKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELF 191 (562)
T ss_pred CCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHHH
Confidence 4677888888999999999999999999999999999999999999999999987654422110000000000 0
Q ss_pred -----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHH
Q psy944 308 -----------------------------GREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEA 358 (689)
Q Consensus 308 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~ 358 (689)
+.++..+..+..++...+.+++.+.+||+.+||-. .+..|...+..+
T Consensus 192 ~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~----~es~~~~~~~~v 267 (562)
T PRK12451 192 KLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQ----GEAFYNDLMEDF 267 (562)
T ss_pred HHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeec----chHhhhhhHHHH
Confidence 00011111123345667889999999999999532 333566778999
Q ss_pred HHHHHHcCCeeeeccc
Q psy944 359 FVILHEAGDIYRSERL 374 (689)
Q Consensus 359 f~~L~~kGliy~~~~~ 374 (689)
+.+|.++|++|+....
T Consensus 268 ~~~L~~~g~~~e~dGa 283 (562)
T PRK12451 268 IGILEEHDLLEESEGA 283 (562)
T ss_pred HHHHHHCCCEEecCCe
Confidence 9999999999976543
No 112
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=98.79 E-value=2.3e-08 Score=103.34 Aligned_cols=125 Identities=21% Similarity=0.204 Sum_probs=88.4
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHH
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEK 315 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~ 315 (689)
+.-+...-|++...+||||+|+++..|++.||.+..||+|.+++++-+..=.|-.++. +.|..
T Consensus 8 ~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~-----~~g~~------------ 70 (300)
T PF01406_consen 8 KVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAR-----EEGVS------------ 70 (300)
T ss_dssp EEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHH-----HTTS-------------
T ss_pred eEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHH-----hccCC------------
Confidence 3444445578889999999999999999999999999999999998663222221111 22322
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeec-ccccccCC
Q psy944 316 VWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSE-RLVHWSCS 380 (689)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~-~~v~w~~~ 380 (689)
..+++..+.+.+.++|++||+.-.. ..+.-.++...+.....+|.++|+.|... ..|+++..
T Consensus 71 ~~ela~~y~~~f~~dm~~Lnv~~p~---~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~ 133 (300)
T PF01406_consen 71 PQELARRYEEEFFEDMKALNVLPPD---HYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVS 133 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----S---EEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCc---cccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeec
Confidence 2356778889999999999998762 22333578889999999999999999999 99999853
No 113
>PLN02286 arginine-tRNA ligase
Probab=98.76 E-value=4.3e-08 Score=112.31 Aligned_cols=135 Identities=13% Similarity=0.176 Sum_probs=97.4
Q ss_pred CCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcc--cccc-----
Q psy944 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKK--TRHE----- 306 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~--~~~~----- 306 (689)
+++.+|-..=|||+|++|+||+|+.+++|+++|..+..||+|......++.|.++...+...... .+. .+..
T Consensus 116 ~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~-~~~~~~~~~~~i~~ 194 (576)
T PLN02286 116 VKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEK-FPNWESVSDQAIGD 194 (576)
T ss_pred CceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHh-cCcccccCcccHHH
Confidence 46788888889999999999999999999999999999999999999999999876654322110 000 0000
Q ss_pred c-------C-----HHHHHHHH------------------HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHH
Q psy944 307 I-------G-----REKFIEKV------------------WEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVT 356 (689)
Q Consensus 307 ~-------~-----~~~~~~~~------------------~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~ 356 (689)
+ . .+++.+.+ +.+.+...+.+++.+.+|||.+|- + -+..|...+.
T Consensus 195 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~---~--ges~y~~~~~ 269 (576)
T PLN02286 195 LQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEE---K--GESFYNPYIP 269 (576)
T ss_pred HHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeee---c--CchhhhhhHH
Confidence 0 0 01122222 133345567899999999999993 1 3345666789
Q ss_pred HHHHHHHHcCCeeeeccc
Q psy944 357 EAFVILHEAGDIYRSERL 374 (689)
Q Consensus 357 ~~f~~L~~kGliy~~~~~ 374 (689)
.++..|.++|++|+....
T Consensus 270 ~vi~~L~~~g~~~e~dGa 287 (576)
T PLN02286 270 GVIEELESKGLVVESDGA 287 (576)
T ss_pred HHHHHHHHCCCEEeeCCc
Confidence 999999999999976543
No 114
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=98.75 E-value=7.4e-09 Score=119.54 Aligned_cols=46 Identities=28% Similarity=0.300 Sum_probs=42.3
Q ss_pred CceEEEc-ceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc
Q psy944 131 HSEVFLH-PIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 131 ~k~v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
+-+.++| |++. .+|+|||||+||+|+|.+++++||+|++|||||+.
T Consensus 299 ~v~y~~H~G~L~-i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~ 345 (651)
T PTZ00399 299 WVNYFLHSGHLH-IKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLH 345 (651)
T ss_pred CCcEEEEEEEEE-eccchhhhcCCCcccHHHHHHHcChHHHHHHHHhc
Confidence 3478899 8876 89999999999999999999999999999999965
No 115
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.69 E-value=5.7e-09 Score=104.43 Aligned_cols=50 Identities=34% Similarity=0.331 Sum_probs=45.6
Q ss_pred cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 130 IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 130 ~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
++.++++|+.+++.+|+|||||+||+++|.+++++||+|++||++++..+
T Consensus 157 ~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~ 206 (213)
T cd00672 157 PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHY 206 (213)
T ss_pred CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCc
Confidence 56888999888889999999999999999999999999999999997543
No 116
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.65 E-value=1.2e-08 Score=114.29 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=75.0
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccc--------cChHHHHHHHHHHHHhcccccc
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHA--------GIATQVVVEKKLWREEKKTRHE 306 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~--------Glpie~~~e~~l~~~~~~~~~~ 306 (689)
++++|.+|.+ |||.+||||++..+.+|+++|+.|++|++|.+++|+|++ ++|-+ .++.+ |.....
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~--~~~yl----G~Pl~~ 90 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEE--LETYL----GMPLTR 90 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHH--HHHhC----CCccee
Confidence 4799999998 999999999999999999999999999999999999999 34411 22222 222222
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy944 307 IGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDW 340 (689)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw 340 (689)
+... | ..+..|++++...+.+.|.++|+.+++
T Consensus 91 vpdp-~-g~~~s~~~h~~~~~~~~l~~~gi~~e~ 122 (515)
T TIGR00467 91 IPDP-E-GCKTSYAEHFLIPFLESLPVLGINPEF 122 (515)
T ss_pred cCCC-C-CCcHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 1111 0 124689999999999999999998874
No 117
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.4e-07 Score=102.32 Aligned_cols=120 Identities=23% Similarity=0.235 Sum_probs=93.2
Q ss_pred eeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHH---HhcccccccCHHHHH
Q psy944 237 FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWR---EEKKTRHEIGREKFI 313 (689)
Q Consensus 237 f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~---~~~~~~~~~~~~~~~ 313 (689)
.-++..-|++....||||+|+++.-|++.||.+..||.|.|+..+-+- +.++.. +.|.
T Consensus 23 V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDI--------DDKIi~rA~~~g~----------- 83 (464)
T COG0215 23 VKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDI--------DDKIINRAREEGL----------- 83 (464)
T ss_pred EEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccc--------cHHHHHHHHHhCC-----------
Confidence 445555689999999999999999999999999999999999987552 232221 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc-cccCCccccCChhhHHHHHHHHHHHHHcCCeeee-cccccccCC
Q psy944 314 EKVWEWKKEKGDRIYEQMKLMGSS-LDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRS-ERLVHWSCS 380 (689)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~lGi~-~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~-~~~v~w~~~ 380 (689)
.++++++.++..+.+++..||+. .|- .+.. .+|...+..++.+|.++|+.|.. ...|+|+.+
T Consensus 84 -~~~ev~~~~i~~f~~D~~aL~v~~p~~-~Pra---Te~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~ 147 (464)
T COG0215 84 -SIREVAERYIAAFFEDMDALNVLPPDI-EPRA---TEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVS 147 (464)
T ss_pred -CHHHHHHHHHHHHHHHHHHhCCCCCcc-cCcH---hhCHHHHHHHHHHHHHCCceEEecCCcEEEecc
Confidence 24577889999999999999995 342 2222 37788899999999999999998 468999853
No 118
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=98.59 E-value=5.8e-09 Score=112.60 Aligned_cols=49 Identities=24% Similarity=0.280 Sum_probs=43.3
Q ss_pred CcCceEEEcceeeCCCCceeeeccCCccCchhhhhc-CChhhHHHHHhhc
Q psy944 129 GIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKG-ISLAGLQGRLLQD 177 (689)
Q Consensus 129 ~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~-~~~d~~r~~l~~~ 177 (689)
.++.++++||.+++.+|+|||||+||+++|.++++. ++++++|||+++.
T Consensus 243 ~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~ 292 (384)
T PRK12418 243 RRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAG 292 (384)
T ss_pred CCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEecc
Confidence 367899999999999999999999999999998764 6777999999954
No 119
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=98.55 E-value=1.3e-08 Score=110.41 Aligned_cols=48 Identities=27% Similarity=0.331 Sum_probs=44.1
Q ss_pred cCceEEEcceeeCCCCceeeeccCCccCchhhhhc-CChhhHHHHHhhc
Q psy944 130 IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKG-ISLAGLQGRLLQD 177 (689)
Q Consensus 130 ~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~-~~~d~~r~~l~~~ 177 (689)
++.++++|+.+++.+|+|||||+||++++.++++. +++|++|+|++++
T Consensus 271 ~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~ 319 (411)
T TIGR03447 271 RMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAG 319 (411)
T ss_pred CcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecC
Confidence 57889999888889999999999999999999986 9999999999954
No 120
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=98.55 E-value=1.4e-08 Score=112.81 Aligned_cols=90 Identities=17% Similarity=0.064 Sum_probs=63.9
Q ss_pred cccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeeeccCCccCchhhhhc-CChhhHHHHHhhc---Cchh-
Q psy944 107 FSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKG-ISLAGLQGRLLQD---SNLE- 181 (689)
Q Consensus 107 f~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~-~~~d~~r~~l~~~---~~~~- 181 (689)
-|.++.+.|.--+++.+......++-++++|+.++..+|+|||||+||++++.+++++ |+++++||++++. .+++
T Consensus 239 GG~DliFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~F 318 (490)
T PRK14536 239 GGVDHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLAF 318 (490)
T ss_pred ccccCCCcchhhHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCCC
Confidence 4566666666555555433222355677788777779999999999999999999998 9999999999976 4444
Q ss_pred HHHHHhhhccccCCC
Q psy944 182 AAERQRAADGQKRDY 196 (689)
Q Consensus 182 ~~~~~~a~~~~~k~l 196 (689)
+.+.+..+....+++
T Consensus 319 s~e~l~~a~~~~~rl 333 (490)
T PRK14536 319 SWEALKTAKAARRSL 333 (490)
T ss_pred CHHHHHHHHHHHHHH
Confidence 444444444433333
No 121
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=98.55 E-value=1.6e-08 Score=112.97 Aligned_cols=48 Identities=31% Similarity=0.254 Sum_probs=42.9
Q ss_pred cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc
Q psy944 130 IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 130 ~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
++.+.++|+.+++.+|+|||||+||+++|.+++++||+|++|||+++.
T Consensus 248 ~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~ 295 (465)
T TIGR00435 248 QLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSV 295 (465)
T ss_pred CCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhC
Confidence 456777876666799999999999999999999999999999999975
No 122
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=98.54 E-value=4.7e-08 Score=109.50 Aligned_cols=49 Identities=31% Similarity=0.314 Sum_probs=45.6
Q ss_pred CcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc
Q psy944 129 GIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 129 ~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
.+|.++++|+.+++.+|+|||||+||+++|.+++++||+|++||++++.
T Consensus 248 ~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~ 296 (463)
T PRK00260 248 KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSA 296 (463)
T ss_pred CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhC
Confidence 4678999998888899999999999999999999999999999999975
No 123
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=98.49 E-value=5.7e-08 Score=100.38 Aligned_cols=60 Identities=33% Similarity=0.366 Sum_probs=40.9
Q ss_pred cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc---Cchh-HHHHHhhh
Q psy944 130 IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD---SNLE-AAERQRAA 189 (689)
Q Consensus 130 ~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~---~~~~-~~~~~~a~ 189 (689)
.+-+.++|.-.+..+|+|||||+||++++.+++++|+++++|++||+. .|++ +.+.++.+
T Consensus 235 ~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A 298 (300)
T PF01406_consen 235 PFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFSEENLEEA 298 (300)
T ss_dssp -SEEEEEEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHH
T ss_pred hHHHHHHHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccCHHHHHHh
Confidence 357888884444589999999999999999999999999999999986 5666 55555544
No 124
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=98.42 E-value=8.6e-08 Score=108.57 Aligned_cols=65 Identities=29% Similarity=0.362 Sum_probs=50.4
Q ss_pred eEEEc-ceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc---Cchh-HHHHHhhhccccCCCCC
Q psy944 133 EVFLH-PIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD---SNLE-AAERQRAADGQKRDYPQ 198 (689)
Q Consensus 133 ~v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~---~~~~-~~~~~~a~~~~~k~l~~ 198 (689)
+.++| |+++ .+|+|||||+||++++.+++++||+|++|||++++ .+++ +.+.++.++...+++..
T Consensus 494 ryWmHnG~V~-vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLsshYRspL~fS~e~Le~Ak~~l~Rl~~ 563 (699)
T PRK14535 494 KYWLHNGFIR-VDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYT 563 (699)
T ss_pred cEEEECCeEe-eCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 45666 6665 89999999999999999999999999999999985 3444 55666666555544433
No 125
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=98.39 E-value=5.3e-08 Score=107.80 Aligned_cols=94 Identities=15% Similarity=0.016 Sum_probs=65.3
Q ss_pred ccc-cccccCCcceeeecCCcccccc-ccCcCceEEEcceeeCCCCceeeeccCCccCchhhhhc-CChhhHHHHHhhc-
Q psy944 102 VLD-TWFSSGLFPFSVFGWPDKQRLS-ANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKG-ISLAGLQGRLLQD- 177 (689)
Q Consensus 102 v~D-~Wf~S~~~~~~~~~wp~~~~l~-~~~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~-~~~d~~r~~l~~~- 177 (689)
++| +--|+++.+.|.-.+++..... +..+++..+.+|+++ .+|+|||||+||++++.+++++ |+++++||++++.
T Consensus 233 ~~DIH~GG~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l~-~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~ 311 (481)
T PRK14534 233 TLDIHLGGVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLI-MEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAH 311 (481)
T ss_pred cceEEecccccCCCcchhHHHHHhhhcCCCcceEEEEecEEE-ecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCC
Confidence 344 3346777777776666654432 333444444445665 8999999999999999999996 9999999999976
Q ss_pred --Cchh-HHHHHhhhccccCCC
Q psy944 178 --SNLE-AAERQRAADGQKRDY 196 (689)
Q Consensus 178 --~~~~-~~~~~~a~~~~~k~l 196 (689)
.|++ +.+.++.++...+++
T Consensus 312 yr~~l~Fs~e~l~~a~~~~~~~ 333 (481)
T PRK14534 312 YRTQLKFTFNNLKACKIARENM 333 (481)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH
Confidence 4555 555666665444443
No 126
>KOG2007|consensus
Probab=98.29 E-value=4.8e-06 Score=89.66 Aligned_cols=121 Identities=16% Similarity=0.181 Sum_probs=89.0
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHH-hcCCeEeeCCCcccccChHHHHHHHHHHHHhc-ccccccCHHHHHHHHHHHH
Q psy944 243 PPNVTGTLHLGHALTNAVEDSITRWNR-MKGKTTLWNPGCDHAGIATQVVVEKKLWREEK-KTRHEIGREKFIEKVWEWK 320 (689)
Q Consensus 243 pP~~nG~lHiGH~~~~~i~D~laRy~r-m~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~-~~~~~~~~~~~~~~~~~~~ 320 (689)
-|++.-..|||||++|+--|++-|+.+ .-||+|.|.+++-+ +++++..... ....+. ...+.+. |+
T Consensus 62 GpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTD--------VDDKII~RAr~~~m~e~-~~~l~~~---F~ 129 (586)
T KOG2007|consen 62 GPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITD--------VDDKIIKRARKEEMGEK-PLSLSER---FC 129 (586)
T ss_pred cCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccc--------hhHHHHHHhhhhhhccc-hhhHHHH---HH
Confidence 478889999999999999999999988 99999999999866 2333322111 000000 0111111 12
Q ss_pred HHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccC
Q psy944 321 KEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSC 379 (689)
Q Consensus 321 ~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~ 379 (689)
.+.+++.++|.+|.+.-. ...|.-.+|...+..+++++.++|+.|.....|+++.
T Consensus 130 -~~e~eF~~DM~~LnvLpP---tv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv 184 (586)
T KOG2007|consen 130 -YYEEEFLQDMAALNVLPP---TVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDV 184 (586)
T ss_pred -HHHHHHHHHHHHhCCCCC---cccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEec
Confidence 456889999999998654 3455557888899999999999999999999999985
No 127
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.24 E-value=7.3e-07 Score=95.51 Aligned_cols=49 Identities=24% Similarity=0.175 Sum_probs=42.9
Q ss_pred CcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcC
Q psy944 129 GIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDS 178 (689)
Q Consensus 129 ~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~ 178 (689)
.+|.. ++||++++..|+|||||+||+|+|.++++.+|+|++||++++..
T Consensus 258 ~~P~~-~~ye~V~l~gg~KMSKSkGnvI~~~dll~~~~~dalR~~~l~~~ 306 (353)
T cd00674 258 EPPVP-VMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYARRK 306 (353)
T ss_pred CCCeE-EEeeeEEeCCCCccCCCCCCcCCHHHHHHHhChHHHHHHHHhCC
Confidence 34544 78999997777799999999999999999999999999999765
No 128
>PLN02946 cysteine-tRNA ligase
Probab=98.19 E-value=2.8e-07 Score=103.70 Aligned_cols=57 Identities=26% Similarity=0.221 Sum_probs=45.0
Q ss_pred eEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc---Cchh-HHHHHhhhc
Q psy944 133 EVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD---SNLE-AAERQRAAD 190 (689)
Q Consensus 133 ~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~---~~~~-~~~~~~a~~ 190 (689)
..+.+|++. .+|+|||||+||++++.+++++||+|++|||+|+. ++++ +.+.+..+.
T Consensus 310 yW~H~G~v~-~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hyr~~l~fs~e~L~~a~ 370 (557)
T PLN02946 310 YWIHNGFVT-VDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESAS 370 (557)
T ss_pred eeeEeeEEE-eCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCCCCCcEecHHHHHHHH
Confidence 333457887 89999999999999999999999999999999976 3444 344444443
No 129
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.15 E-value=5.3e-06 Score=83.85 Aligned_cols=92 Identities=25% Similarity=0.305 Sum_probs=65.7
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHH
Q psy944 242 PPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKK 321 (689)
Q Consensus 242 ~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (689)
-+|.|||.+|+||++++++.+.++| ++++.+..-+|+.--+.. .| ..
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~-------------------------~~---~~ 52 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK-------------------------RP---DP 52 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc-------------------------cc---hH
Confidence 4699999999999999999999999 455555555655422210 00 12
Q ss_pred HHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 322 EKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 322 ~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
.+.+.|.++|+.||+ +|+..+. ...+.+..+.+..+|.++|++|.
T Consensus 53 ~~~~~i~~dL~wLGl--~~d~~~~--qS~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 53 EAYDMIPEDLEWLGV--KWDEVVI--ASDRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHHHHHHHHcCC--CCCCccc--hhccHHHHHHHHHHHHHcCCccc
Confidence 233558899999999 6665543 34556677778899999999997
No 130
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.12 E-value=1.7e-06 Score=97.82 Aligned_cols=50 Identities=26% Similarity=0.266 Sum_probs=43.5
Q ss_pred CcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 129 GIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 129 ~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
.+|.. ++||++++.+|+|||||+||+++|.++++.+++|++|||++.+.+
T Consensus 263 ~~P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~~ 312 (510)
T PRK00750 263 EPPEP-FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPK 312 (510)
T ss_pred CCCee-eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCCC
Confidence 34655 689999977799999999999999999999999999998885544
No 131
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.98 E-value=2.2e-05 Score=88.64 Aligned_cols=97 Identities=29% Similarity=0.375 Sum_probs=68.7
Q ss_pred eecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHH
Q psy944 238 VMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVW 317 (689)
Q Consensus 238 ~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 317 (689)
+++==+|+|||+|||||++++++.+.+|| ...|.-++ -+|+.--.+..
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar--~~~G~~iL---RidDTDpk~~R--------------------------- 149 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAK--MYGGKFIL---RFEDTDPRTKR--------------------------- 149 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEE---eEccCCCCccc---------------------------
Confidence 44446899999999999999999999999 33444444 45543211100
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeee
Q psy944 318 EWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRS 371 (689)
Q Consensus 318 ~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 371 (689)
....+.+.|.++|+.||+ +|+..++. .++.........+|.++|++|..
T Consensus 150 -~~~e~~~~I~edL~wLGl--~wD~~~~q--Sdr~~~y~~~a~~Li~~G~AY~C 198 (567)
T PRK04156 150 -PDPEAYDMILEDLKWLGV--KWDEVVIQ--SDRLEIYYEYARKLIEMGGAYVC 198 (567)
T ss_pred -chHHHHHHHHHHHHHcCC--CCCCccCc--ccCHHHHHHHHHHHHHcCCCccC
Confidence 012234789999999999 56565543 56677888899999999999963
No 132
>KOG2007|consensus
Probab=97.78 E-value=1.3e-05 Score=86.36 Aligned_cols=48 Identities=38% Similarity=0.423 Sum_probs=41.5
Q ss_pred eEEEc-ceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc---Cchh
Q psy944 133 EVFLH-PIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD---SNLE 181 (689)
Q Consensus 133 ~v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~---~~~~ 181 (689)
+-++| |++. .+|.|||||++|+++..+++++|+++.||++||.+ ++++
T Consensus 291 nYflHtGhL~-i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ld 342 (586)
T KOG2007|consen 291 NYFLHTGHLT-INGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLD 342 (586)
T ss_pred eeEEEcCeee-eccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCC
Confidence 44566 6665 89999999999999999999999999999999875 5666
No 133
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.75 E-value=5.4e-05 Score=85.49 Aligned_cols=96 Identities=25% Similarity=0.376 Sum_probs=69.8
Q ss_pred eecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHH
Q psy944 238 VMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVW 317 (689)
Q Consensus 238 ~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 317 (689)
+++==||.|||+|||||++++++.+.+|| ...|.-++ -+|+.--+ +
T Consensus 94 vvtRFaPsPtG~LHiGharaalln~~~Ar--~~~G~~iL---RidDTDp~------R----------------------- 139 (560)
T TIGR00463 94 VVMRFAPNPSGPLHIGHARAAILNQYFAK--KYKGKLII---RFDDTDPR------R----------------------- 139 (560)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCCEEEE---EeCcCCcc------c-----------------------
Confidence 55666899999999999999999999997 33454444 44543211 0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeec
Q psy944 318 EWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSE 372 (689)
Q Consensus 318 ~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~ 372 (689)
-...+.+.|.++|+.||+. |+..+. ..+|.........+|.++|++|...
T Consensus 140 -~~~e~~~~I~edL~wLGi~--~d~~~~--qSd~~~~y~~~a~~Li~~G~AY~C~ 189 (560)
T TIGR00463 140 -VKPEAYDMILEDLDWLGVK--GDEVVY--QSDRIEEYYDYCRKLIEMGKAYVCD 189 (560)
T ss_pred -ccHHHHHHHHHHHHHcCCC--CCcccc--ccccHHHHHHHHHHHHHcCCceeec
Confidence 0123557899999999997 445443 4567778889999999999999743
No 134
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.62 E-value=0.00018 Score=79.45 Aligned_cols=89 Identities=31% Similarity=0.322 Sum_probs=64.2
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Q psy944 243 PPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKE 322 (689)
Q Consensus 243 pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (689)
.|.|||+||+||++++++.-.+||- ..|.-+++.==+|. . .-.+.
T Consensus 8 APSPTG~lHiG~artAL~n~l~Ar~--~gG~fiLRIEDTD~---~------------------------------Rs~~~ 52 (445)
T PRK12558 8 APSPTGYLHVGNARTALLNWLYARK--HGGKFILRIDDTDL---E------------------------------RSKQE 52 (445)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEeccCCc---c------------------------------cchHH
Confidence 6899999999999999988888873 34555554333331 0 01234
Q ss_pred HHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 323 KGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 323 ~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
+.+.|+++|+.||+.+| ..|+.+ ......+.+..+|.++|++|.
T Consensus 53 ~~~~I~e~L~wLGI~~D--e~y~QS--er~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 53 YADAIAEDLKWLGINWD--RTFRQS--DRFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred HHHHHHHHHHHcCCCCC--ccccHH--HHHHHHHHHHHHHHHCCCEEE
Confidence 56889999999998766 444433 333578999999999999985
No 135
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=97.61 E-value=3.3e-05 Score=86.95 Aligned_cols=43 Identities=23% Similarity=0.170 Sum_probs=37.4
Q ss_pred Eccee-eCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcC
Q psy944 136 LHPIV-RDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDS 178 (689)
Q Consensus 136 ~hg~~-~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~ 178 (689)
..+++ ++.+|+|||||+||++++.++++.+++|++||++++..
T Consensus 262 ~ye~v~L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l~~~ 305 (515)
T TIGR00467 262 QYEWISLKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFARTK 305 (515)
T ss_pred EEEEEEEcCCCccccCCCCCCccHHHHHHHcCHHHHHHHHhccC
Confidence 45555 66678999999999999999999999999999988653
No 136
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.59 E-value=0.00022 Score=73.95 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=65.1
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Q psy944 243 PPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKE 322 (689)
Q Consensus 243 pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (689)
.|.|||.||+||++++++.-.+|| ...|.-+++.==+|..- ....
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~~R---------------------------------~~~~ 50 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDPPR---------------------------------EVPG 50 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCCC---------------------------------CChH
Confidence 589999999999999999999999 44666666443333210 0123
Q ss_pred HHHHHHHHHHHhccccccCCc-cccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 323 KGDRIYEQMKLMGSSLDWDRA-CFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 323 ~~~~~~~~l~~lGi~~Dw~~~-~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
+.+.|.++|+.||+..| .. +.. .++.+.-..+..+|.++|++|.
T Consensus 51 ~~~~I~~dL~wLGl~wD--e~~~~Q--S~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 51 AADDILRTLEAYGLHWD--GEVVYQ--SQRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred HHHHHHHHHHHcCCCCC--CCeeee--eCCHHHHHHHHHHHHHcCCEEe
Confidence 45778999999998655 43 333 3555678888999999999985
No 137
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.50 E-value=0.00041 Score=70.09 Aligned_cols=90 Identities=23% Similarity=0.288 Sum_probs=65.0
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHH
Q psy944 242 PPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKK 321 (689)
Q Consensus 242 ~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (689)
=+|.|||+||+||++++++.-.+||- ..|.-+++ +|+.-.+- -..
T Consensus 6 FAPsPtG~lHlG~~~~al~~~l~Ar~--~~G~~iLR---ieDtD~~R------------------------------~~~ 50 (238)
T cd00807 6 FPPEPNGYLHIGHAKAILLNFGYAKK--YGGRCNLR---FDDTNPEK------------------------------EEE 50 (238)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ecCCCCcc------------------------------cch
Confidence 36999999999999999999999984 35555543 33321110 012
Q ss_pred HHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 322 EKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 322 ~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
.+.+.|.++|+-||+..| ..+. ...+.+.-+.+..+|.++|++|.
T Consensus 51 ~~~~~I~~dL~wlGl~wD--~~~~--QS~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 51 EYVDSIKEDVKWLGIKPY--KVTY--ASDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred HHHHHHHHHHHHcCCCCC--Ccee--cccCHHHHHHHHHHHHHcCCeec
Confidence 345778999999998666 4443 34556778889999999999999
No 138
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.49 E-value=0.00029 Score=79.80 Aligned_cols=94 Identities=23% Similarity=0.377 Sum_probs=68.1
Q ss_pred eecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHH
Q psy944 238 VMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVW 317 (689)
Q Consensus 238 ~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 317 (689)
+++==||.|||+|||||+++.++...+||- ..|.-+++ +|+.--+-
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~--~gG~~iLR---iEDTDp~R----------------------------- 98 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADK--YKGKLVFR---FDDTNPSK----------------------------- 98 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---EcCCCCcc-----------------------------
Confidence 555668999999999999999999999984 35655553 34322110
Q ss_pred HHHHHHHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 318 EWKKEKGDRIYEQMKLMGSSLDWDR-ACFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 318 ~~~~~~~~~~~~~l~~lGi~~Dw~~-~~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
-...+.+.|.++|+-||+ +|+. .++. .+|.........+|.++|++|-
T Consensus 99 -~~~e~~d~IleDL~WLGl--~wDe~~~~Q--Sdr~d~y~e~a~~Li~~G~AY~ 147 (601)
T PTZ00402 99 -EKEHFEQAILDDLATLGV--SWDVGPTYS--SDYMDLMYEKAEELIKKGLAYC 147 (601)
T ss_pred -cCHHHHHHHHHHHHHCCC--CCCCceeec--cccHHHHHHHHHHHHHcCCEEE
Confidence 012356789999999998 5554 4443 4567788889999999999983
No 139
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.49 E-value=0.00033 Score=74.59 Aligned_cols=90 Identities=28% Similarity=0.378 Sum_probs=59.5
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Q psy944 243 PPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKE 322 (689)
Q Consensus 243 pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (689)
+|.|||+||+||++++++.-.+|| ...|.-+++.==+|. +- -...
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~---~R------------------------------~~~~ 51 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDP---ER------------------------------CRPE 51 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSST---TT------------------------------CHHH
T ss_pred CCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecccccc---cc------------------------------chhh
Confidence 589999999999999999999998 456666664333332 10 0123
Q ss_pred HHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 323 KGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 323 ~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
+.+.|.++|+.||+..|. ..|.. ..+...-+.+..+|.++|++|.
T Consensus 52 ~~~~i~~~L~wlGl~~D~-~~~~Q--S~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 52 FYDAILEDLRWLGLEWDY-GPYYQ--SDRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp HHHHHHHHHHHHT---ST-CEEEG--GGGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhheeEEEEecCC-eEEeH--HHHHHHHHHHHHHHhhcCCCcc
Confidence 457789999999988772 34433 4556677888899999999986
No 140
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.48 E-value=0.00035 Score=78.18 Aligned_cols=95 Identities=28% Similarity=0.377 Sum_probs=69.5
Q ss_pred eecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHH
Q psy944 238 VMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVW 317 (689)
Q Consensus 238 ~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 317 (689)
+++==+|.|||+||+|||+++++...+||- ..|.-+++ +|+.--. +
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~--~gG~~iLR---iEDTDp~------R----------------------- 57 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARR--YKGRLILR---FDDTNPS------K----------------------- 57 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ECCCCCC------c-----------------------
Confidence 455568999999999999999999999984 45665553 3332111 0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeee
Q psy944 318 EWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRS 371 (689)
Q Consensus 318 ~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 371 (689)
-...+.+.|.++|+-||+..| ..+.+ .+|.........+|.++|++|..
T Consensus 58 -~~~e~~~~I~~dL~WLGl~wD--~~~~q--Sdr~~~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 58 -EKAEFEESIIEDLGKIEIKPD--SVSFT--SDYFEPIRCYAIILIEEGLAYMD 106 (523)
T ss_pred -cchHHHHHHHHHHHHhCCCCC--CCccc--cccHHHHHHHHHHHHHcCCeEec
Confidence 023356789999999998754 55544 46667888899999999999975
No 141
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.48 E-value=2.8e-05 Score=88.46 Aligned_cols=47 Identities=34% Similarity=0.433 Sum_probs=42.0
Q ss_pred eEEEc---ceeeCCCCceeeeccCCccCchhhhhc-CCh----------------hhHHHHHhhcCc
Q psy944 133 EVFLH---PIVRDAHGRKMSKSLGNVIDPLDVVKG-ISL----------------AGLQGRLLQDSN 179 (689)
Q Consensus 133 ~v~~h---g~~~~~~g~KmSKS~gn~~~~~~~~~~-~~~----------------d~~r~~l~~~~~ 179 (689)
.++.| |++++.+|+|||||+||+++|++++++ +|. |++||++++..+
T Consensus 305 ~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~~~ 371 (507)
T PRK01611 305 EVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSRSR 371 (507)
T ss_pred eEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhcCC
Confidence 55666 889988999999999999999999999 999 999999997643
No 142
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.44 E-value=0.00049 Score=77.32 Aligned_cols=95 Identities=28% Similarity=0.301 Sum_probs=66.0
Q ss_pred ecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHH
Q psy944 239 MVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWE 318 (689)
Q Consensus 239 i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ 318 (689)
++==+|.|||+||+||++++++...+||- ..|.-+++ +|+.--..
T Consensus 53 ~tRFaPsPtG~LHiGharaalln~~~Ar~--~gG~~iLR---iEDTDp~r------------------------------ 97 (574)
T PTZ00437 53 YFRFPPEPNGFLHIGHAKSMNLNFGSARA--HGGKCYLR---YDDTNPET------------------------------ 97 (574)
T ss_pred EEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ECCCCccc------------------------------
Confidence 44457999999999999999999999984 34555553 33322110
Q ss_pred HHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeec
Q psy944 319 WKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSE 372 (689)
Q Consensus 319 ~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~ 372 (689)
-...+.+.|.++|+-||+..| ..+.+ ..|.+.......+|.++|++|...
T Consensus 98 ~~~e~~~~I~~dL~wLGi~~D--~~~~q--S~y~~~~ye~A~~Li~~G~AY~C~ 147 (574)
T PTZ00437 98 EEQVYIDAIMEMVKWMGWKPD--WVTFS--SDYFDQLHEFAVQLIKDGKAYVDH 147 (574)
T ss_pred cChHHHHHHHHHHHHcCCCCC--CCCcC--chhHHHHHHHHHHHHHcCCEEEcC
Confidence 022355789999999998655 54433 455555567777999999998743
No 143
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.37 E-value=0.00062 Score=76.34 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=64.2
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHH
Q psy944 242 PPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKK 321 (689)
Q Consensus 242 ~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (689)
=||.|||.||+|||+++++...+|| ...|.-+++ +|++--. + -..
T Consensus 5 FaPsPtG~LHiG~ar~al~n~~~A~--~~~G~~iLR---ieDTd~~------r------------------------~~~ 49 (522)
T TIGR00440 5 FPPEPNGYLHIGHAKSICLNFGYAK--YYNGTCNLR---FDDTNPV------K------------------------EDP 49 (522)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---EcCCCcc------c------------------------CCh
Confidence 3799999999999999999999998 345655553 3332211 0 012
Q ss_pred HHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeec
Q psy944 322 EKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSE 372 (689)
Q Consensus 322 ~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~ 372 (689)
.+.+.|.++|+-||+..|- ..+.+ .+|.........+|.++|++|...
T Consensus 50 e~~~~I~~dL~wLG~~~d~-~~~~q--S~~~~~~~~~a~~Li~~G~AY~c~ 97 (522)
T TIGR00440 50 EYVESIKRDVEWLGFKWEG-KIRYS--SDYFDELYRYAEELIKKGLAYVDE 97 (522)
T ss_pred HHHHHHHHHHHHcCCCCCC-CceEc--cccHHHHHHHHHHHHHcCCEEeec
Confidence 3557899999999986652 33333 344445556668999999999754
No 144
>PLN02907 glutamate-tRNA ligase
Probab=97.36 E-value=0.0005 Score=80.59 Aligned_cols=94 Identities=27% Similarity=0.378 Sum_probs=69.6
Q ss_pred eecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHH
Q psy944 238 VMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVW 317 (689)
Q Consensus 238 ~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 317 (689)
+++==||.|||+||||||+++++...+|| ...|.-+++ +|++--. +
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR---~eDTdp~------r----------------------- 259 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVR---FDDTNPS------K----------------------- 259 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ecCCCCC------c-----------------------
Confidence 56667899999999999999999999998 445665553 3432111 0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 318 EWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 318 ~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
-..++.+.|.++|+-||+..| ..+++ .+|.........+|.++|++|.
T Consensus 260 -~~~e~~~~I~~dl~wLG~~~d--~~~~q--S~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 260 -ESDEFVENILKDIETLGIKYD--AVTYT--SDYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred -CChHHHHHHHHHHHHcCCCCC--Ccccc--cccHHHHHHHHHHHHHcCCeee
Confidence 012356789999999998655 65544 4566778889999999999996
No 145
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.29 E-value=0.00073 Score=76.00 Aligned_cols=96 Identities=24% Similarity=0.276 Sum_probs=65.1
Q ss_pred eecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHH
Q psy944 238 VMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVW 317 (689)
Q Consensus 238 ~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 317 (689)
+++==+|.|||.||+|||+++++...+||- ..|.-+++ +|++-...
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLR---ieDTd~~r----------------------------- 75 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNLR---FDDTNPEK----------------------------- 75 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ECCCCCCc-----------------------------
Confidence 455568999999999999999999999984 45555553 34322110
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeee
Q psy944 318 EWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRS 371 (689)
Q Consensus 318 ~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 371 (689)
-...+.+.|.++|+-||+..|- ..+.++ +|.......-.+|.++|++|..
T Consensus 76 -~~~e~~~~I~~dL~wLGi~~d~-~~~~qS--~r~~~~y~~a~~Li~~G~AY~c 125 (554)
T PRK05347 76 -EDQEYVDSIKEDVRWLGFDWSG-ELRYAS--DYFDQLYEYAVELIKKGKAYVD 125 (554)
T ss_pred -CChHHHHHHHHHHHHcCCCCCC-Cceeee--cCHHHHHHHHHHHHHcCCEeeC
Confidence 0123457889999999987652 334433 3334444555799999999974
No 146
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.00074 Score=75.08 Aligned_cols=96 Identities=27% Similarity=0.275 Sum_probs=68.1
Q ss_pred eecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHH
Q psy944 238 VMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVW 317 (689)
Q Consensus 238 ~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 317 (689)
+++==+|.|||+||||||+++++.-.+||- ..|.-+++.==+|- + +
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~--~~G~fiLRiEDTD~---~------R----------------------- 55 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARK--YGGKFILRIEDTDP---E------R----------------------- 55 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHH--hCCEEEEEecCCCC---C------C-----------------------
Confidence 555668999999999999999999999984 45665654333332 1 0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHHHcCCeeeec
Q psy944 318 EWKKEKGDRIYEQMKLMGSSLDWDR-ACFTMDPKLSRAVTEAFVILHEAGDIYRSE 372 (689)
Q Consensus 318 ~~~~~~~~~~~~~l~~lGi~~Dw~~-~~~T~d~~~~~~v~~~f~~L~~kGliy~~~ 372 (689)
-...+.+.|.++|+-||+..| . .|+. .++...-.....+|.++|++|...
T Consensus 56 -~~~e~~~~I~~~L~WLGl~wd--e~~~~Q--S~r~~~Y~~~~~~Li~~G~AY~c~ 106 (472)
T COG0008 56 -ETPEAEDAILEDLEWLGLDWD--EGPYYQ--SERFDIYYEYAEKLIEKGKAYVCY 106 (472)
T ss_pred -CCHHHHHHHHHHHHhcCCCCC--Cceeeh--hhhHHHHHHHHHHHHHCCCeEEec
Confidence 012244778999999997555 5 3433 456667788889999999998743
No 147
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.25 E-value=0.00062 Score=79.79 Aligned_cols=97 Identities=22% Similarity=0.245 Sum_probs=69.0
Q ss_pred eecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHH
Q psy944 238 VMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVW 317 (689)
Q Consensus 238 ~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 317 (689)
+++==||.|||+||+||+++.++...+||- ..|.-++ -+|+.--..
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~~--~~G~~~L---R~eDTd~~r----------------------------- 77 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARD--YGGRCHL---RMDDTNPET----------------------------- 77 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHHH--hCCEEEE---EeCCCCCCc-----------------------------
Confidence 556668999999999999999999999983 4455554 344432110
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeec
Q psy944 318 EWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSE 372 (689)
Q Consensus 318 ~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~ 372 (689)
-...+.+.|.++|+-||+..|.. .|+ ..+|.........+|.++|++|...
T Consensus 78 -~~~e~~~~I~~dl~wLG~~wd~~-~~~--qS~~~~~y~~~a~~Li~~G~aY~c~ 128 (771)
T PRK14703 78 -EDTEYVEAIKDDVRWLGFDWGEH-LYY--ASDYFERMYAYAEQLIKMGLAYVDS 128 (771)
T ss_pred -CChHHHHHHHHHHHHcCCCCCCC-ceE--eecCHHHHHHHHHHHHHcCCcccCc
Confidence 01235678999999999866522 233 3466677788888999999999743
No 148
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.24 E-value=0.00092 Score=70.15 Aligned_cols=91 Identities=20% Similarity=0.213 Sum_probs=62.7
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHH
Q psy944 242 PPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKK 321 (689)
Q Consensus 242 ~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (689)
=.|.|||+||+||++++++.-.+||-. .|.-+++.==+|. + + -..
T Consensus 10 FAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRiEDtD~---~------R------------------------~~~ 54 (299)
T PRK05710 10 FAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRIEDIDP---P------R------------------------EVP 54 (299)
T ss_pred eCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEECcCCC---C------c------------------------cch
Confidence 368999999999999999999999842 3544443322221 1 0 012
Q ss_pred HHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 322 EKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 322 ~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
.+.+.|.++|+.||+..|= ..|+. .++...-+.+..+|.++|++|.
T Consensus 55 ~~~~~I~~dL~wlGl~wDe-~~~~Q--S~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 55 GAADAILADLEWLGLHWDG-PVLYQ--SQRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred HHHHHHHHHHHHCCCCCCC-CceEe--eccHHHHHHHHHHHHHCCCcee
Confidence 3457789999999985551 24443 3455677888999999999885
No 149
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.19 E-value=0.0012 Score=72.68 Aligned_cols=89 Identities=16% Similarity=0.233 Sum_probs=64.3
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Q psy944 243 PPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKE 322 (689)
Q Consensus 243 pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (689)
.|.|||+||+||++++++.-.+|| ...|.-+++.==+|. . + ....
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar--~~gG~fiLRiEDTD~---~------R------------------------~~~e 49 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAK--QQNEDFLIRIEDTDK---E------R------------------------NIEG 49 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC---C------c------------------------CChH
Confidence 589999999999999999999998 345666664433332 0 0 0223
Q ss_pred HHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 323 KGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 323 ~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
+.+.|.++|+-||+..| ..|..+ ++...-..+..+|.++|.+|.
T Consensus 50 ~~~~I~~~L~WlGl~wD--e~y~QS--eR~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 50 KDKEILEILNLFGISWD--KLVYQS--ENLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred HHHHHHHHHHHcCCCCC--CCeehh--ccHHHHHHHHHHHHHcCCeee
Confidence 45778999999998555 666544 334566778899999999985
No 150
>PLN02859 glutamine-tRNA ligase
Probab=97.16 E-value=0.0014 Score=76.25 Aligned_cols=96 Identities=28% Similarity=0.275 Sum_probs=64.3
Q ss_pred eecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHH
Q psy944 238 VMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVW 317 (689)
Q Consensus 238 ~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 317 (689)
+.+==||.|||+|||||+++.++.-.+||. ..|.-+++ +|+.--..
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~--~~G~~~LR---ieDTdp~r----------------------------- 310 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGCCYLR---FDDTNPEA----------------------------- 310 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ecCCCCCc-----------------------------
Confidence 445558999999999999999999999995 35655553 34322110
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeec
Q psy944 318 EWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSE 372 (689)
Q Consensus 318 ~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~ 372 (689)
-...+.+.|.++++-||+ +|+..++++ +|.......-.+|.++|++|...
T Consensus 311 -~~~e~~~~I~edL~WLG~--~~d~~~~qS--d~f~~~Y~~A~~Li~~G~AY~C~ 360 (788)
T PLN02859 311 -EKKEYIDHIEEIVEWMGW--EPFKITYTS--DYFQELYELAVELIRRGHAYVDH 360 (788)
T ss_pred -cchHHHHHHHHHHHHcCC--CCCCccccc--HhHHHHHHHHHHHHHcCCeEecc
Confidence 022355789999999995 565665544 33322333456699999999743
No 151
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=97.14 E-value=0.0017 Score=65.50 Aligned_cols=100 Identities=23% Similarity=0.202 Sum_probs=66.8
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Q psy944 243 PPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKE 322 (689)
Q Consensus 243 pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (689)
+|.|||+||+||++++++.-.+||- ..|.=+++.==+|. + + -...
T Consensus 7 APsPtG~lHlG~~r~al~n~l~Ar~--~~G~~iLRieDtD~---~------R------------------------~~~~ 51 (230)
T cd00418 7 APSPTGYLHIGHARTALFNFAFARK--YGGKFILRIEDTDP---E------R------------------------SRPE 51 (230)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEEeCcCCC---C------C------------------------CChH
Confidence 6999999999999999999999984 35555554332322 1 0 0123
Q ss_pred HHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCc
Q psy944 323 KGDRIYEQMKLMGSSLDWDR-ACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIE 389 (689)
Q Consensus 323 ~~~~~~~~l~~lGi~~Dw~~-~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~e 389 (689)
+.+.|.++|+.||+..| . .|.. ..+.+.-+....+|.++| ..+.-....++.|+.
T Consensus 52 ~~~~I~~dL~wlGl~wd--~~~~~Q--S~r~~~y~~~~~~L~~~g--------g~p~Y~la~vvDD~~ 107 (230)
T cd00418 52 YVESILEDLKWLGLDWD--EGPYRQ--SDRFDLYRAYAEELIKKG--------GYPLYNFVHPVDDAL 107 (230)
T ss_pred HHHHHHHHHHHcCCCCC--CCeeeh--hcCHHHHHHHHHHHHHcC--------CCccccccccccccc
Confidence 45788999999998655 4 4433 445567777889999999 333344445555553
No 152
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.02 E-value=0.00035 Score=74.47 Aligned_cols=45 Identities=27% Similarity=0.251 Sum_probs=23.7
Q ss_pred EEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 135 FLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 135 ~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
+.-.|+++..|.|||||+||++++.+.++-+.++.|||+++...|
T Consensus 270 ~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~~~P 314 (360)
T PF01921_consen 270 FPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMARTKP 314 (360)
T ss_dssp EEE--EEES--------------HHHHHTTS-HHHHHHHHHCS-T
T ss_pred CCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHcccCC
Confidence 367899877777999999999999999999999999999997544
No 153
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.01 E-value=0.0021 Score=72.25 Aligned_cols=90 Identities=26% Similarity=0.299 Sum_probs=62.5
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Q psy944 243 PPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKE 322 (689)
Q Consensus 243 pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (689)
+|.|||.||+||++++++.-.+|| ...|.-+++.==+|. . + ....
T Consensus 7 APsPtG~lHiG~~rtal~n~l~Ar--~~~G~~iLRieDtD~---~------R------------------------~~~~ 51 (470)
T TIGR00464 7 APSPTGYLHIGGARTALFNYLFAK--HTGGEFILRIEDTDL---E------R------------------------NIEE 51 (470)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC---c------c------------------------CChH
Confidence 689999999999999999999998 344555554332322 0 0 0123
Q ss_pred HHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 323 KGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 323 ~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
+.+.|.++|+-||+..| ..+|..+ .+.+.-+.+..+|.++|++|.
T Consensus 52 ~~~~i~~~L~wlGl~~d-e~~~~QS--~r~~~y~~~~~~L~~~g~aY~ 96 (470)
T TIGR00464 52 AEEAILEGLKWLGISWD-EGPYYQS--QRLDIYKKYAKELLEEGLAYR 96 (470)
T ss_pred HHHHHHHHHHHCCCCCC-CCeeehh--CCHHHHHHHHHHHHHcCCEEe
Confidence 45778999999998554 1344433 334566778889999999995
No 154
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=96.97 E-value=0.00024 Score=81.90 Aligned_cols=52 Identities=17% Similarity=0.082 Sum_probs=44.7
Q ss_pred ccCcCceEEEcceeeCCCCceeeeccCCccCch-----------------------hhhhcCChhhHHHHHhhcCc
Q psy944 127 ANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPL-----------------------DVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 127 ~~~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~-----------------------~~~~~~~~d~~r~~l~~~~~ 179 (689)
|..+++++..|++.+ .+|.|||||+||+|+|. ++++.+|.|++||++|+.++
T Consensus 353 G~~~~~~l~h~~~~~-V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~~ 427 (566)
T TIGR00456 353 GFYKKKELIHLNFGM-VPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQNR 427 (566)
T ss_pred CCCCCCceEEEEEEE-EECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcCC
Confidence 333578899999988 67899999999999998 78888999999999997654
No 155
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=96.90 E-value=0.0035 Score=70.26 Aligned_cols=92 Identities=26% Similarity=0.329 Sum_probs=65.0
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHH
Q psy944 242 PPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKK 321 (689)
Q Consensus 242 ~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (689)
=.|.|||.||+||++++++.-.+|| ...|.-+++.==+|. . ....
T Consensus 9 FAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~---~------------------------------R~~~ 53 (513)
T PRK14895 9 FAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTDK---E------------------------------RSTK 53 (513)
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCc---c------------------------------ccCh
Confidence 3689999999999999999999999 456666664433332 0 0122
Q ss_pred HHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeee
Q psy944 322 EKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRS 371 (689)
Q Consensus 322 ~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 371 (689)
.+.+.|.++|+-||+..| ..+|+-++ +...-.....+|.++|.+|.-
T Consensus 54 ~~~~~i~~~L~WLGl~wD-e~py~QSe--R~~~Y~~~a~~Li~~G~AY~C 100 (513)
T PRK14895 54 EAVEAIFSGLKWLGLDWN-GEVIFQSK--RNNLYKEAALKLLQNGKAYYC 100 (513)
T ss_pred HHHHHHHHHHHHcCCCCC-CCceeEeC--cHHHHHHHHHHHHHcCCeEEe
Confidence 345778999999998544 13454433 345777888999999999863
No 156
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=96.82 E-value=0.0034 Score=70.53 Aligned_cols=90 Identities=27% Similarity=0.262 Sum_probs=63.8
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHH
Q psy944 242 PPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKK 321 (689)
Q Consensus 242 ~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (689)
=+|.|||.||+||++++++.-.+||- ..|.-+++.==+|. . ....
T Consensus 9 fAPSPtG~lHiG~~rtal~n~l~Ar~--~~G~fiLRieDtD~---~------------------------------R~~~ 53 (476)
T PRK01406 9 FAPSPTGYLHIGGARTALFNWLFARH--HGGKFILRIEDTDQ---E------------------------------RSTE 53 (476)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC---C------------------------------CCCh
Confidence 36999999999999999999999983 45555554333332 0 0122
Q ss_pred HHHHHHHHHHHHhccccccCCc--------cccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 322 EKGDRIYEQMKLMGSSLDWDRA--------CFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 322 ~~~~~~~~~l~~lGi~~Dw~~~--------~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
.+.+.|.++|+-||+..| .. |+. .++...-.....+|.++|++|.
T Consensus 54 ~~~~~i~~~L~wlGl~~D--e~p~~~~~gpy~Q--S~r~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 54 EAEEAILEGLKWLGLDWD--EGPDGGPYGPYRQ--SERLDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred HHHHHHHHHHHHCCCCCC--CCCccCCCCceeh--hcCHHHHHHHHHHHHHcCCeee
Confidence 345778999999998655 33 433 3444677888899999999996
No 157
>PLN02627 glutamyl-tRNA synthetase
Probab=96.80 E-value=0.004 Score=69.96 Aligned_cols=92 Identities=27% Similarity=0.353 Sum_probs=64.4
Q ss_pred cCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHH
Q psy944 240 VIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEW 319 (689)
Q Consensus 240 ~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~ 319 (689)
+==.|.|||.||+||++++++.-.+|| ...|.-+++.==+|.. ..
T Consensus 48 ~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~~---------------------------------R~ 92 (535)
T PLN02627 48 VRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDLA---------------------------------RS 92 (535)
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCC---------------------------------CC
Confidence 334579999999999999999999999 4556666644333320 00
Q ss_pred HHHHHHHHHHHHHHhccccccCCc---------cccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 320 KKEKGDRIYEQMKLMGSSLDWDRA---------CFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 320 ~~~~~~~~~~~l~~lGi~~Dw~~~---------~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
...+.+.|.++|+-||+. |+.. |+- .++...-..+..+|.++|++|.
T Consensus 93 ~~e~~~~I~~~L~WLGl~--wDegp~~gg~~gpy~Q--SeR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 93 TKESEEAVLRDLKWLGLD--WDEGPDVGGEYGPYRQ--SERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred ChHHHHHHHHHHHHcCCC--CCcCcccCCCCCCeee--eccHHHHHHHHHHHHHcCCeee
Confidence 223457789999999975 5442 332 2334567788889999999985
No 158
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.79 E-value=0.0067 Score=61.73 Aligned_cols=85 Identities=25% Similarity=0.244 Sum_probs=57.1
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Q psy944 243 PPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKE 322 (689)
Q Consensus 243 pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (689)
+|.|||.||+||++++++.-.+||- ..|.-++ -+|+.-.+ + -...
T Consensus 7 APsPtG~LHlG~~~~al~n~l~ar~--~~G~~il---RieDtd~~------r------------------------~~~~ 51 (239)
T cd00808 7 APSPTGFLHIGGARTALFNYLFARK--HGGKFIL---RIEDTDQE------R------------------------SVPE 51 (239)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEE---EECcCCCC------C------------------------CchH
Confidence 6999999999999999999999883 3453333 23331111 0 0122
Q ss_pred HHHHHHHHHHHhccccccCC---------ccccCChhhHHHHHHHHHHHHHcC
Q psy944 323 KGDRIYEQMKLMGSSLDWDR---------ACFTMDPKLSRAVTEAFVILHEAG 366 (689)
Q Consensus 323 ~~~~~~~~l~~lGi~~Dw~~---------~~~T~d~~~~~~v~~~f~~L~~kG 366 (689)
+.+.|.++|..||+..| . .|..+ ........+..+|.++|
T Consensus 52 ~~~~i~~dL~wlGl~~d--~~~~~~g~~~~~~QS--~r~~~y~~~~~~L~~~g 100 (239)
T cd00808 52 AEEAILEALKWLGLDWD--EGPDVGGPYGPYRQS--ERLEIYRKYAEKLLEKG 100 (239)
T ss_pred HHHHHHHHHHHcCCCCC--cCCccCCCCCCEeee--CCHHHHHHHHHHHHHcC
Confidence 44778889999997544 5 45544 35566677788888888
No 159
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.0065 Score=66.97 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=74.2
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccccc--------ChHHHHHHHHHHHHhcccccc
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAG--------IATQVVVEKKLWREEKKTRHE 306 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~G--------lpie~~~e~~l~~~~~~~~~~ 306 (689)
+.+++-.|. .|+|.+|||+++..+.+|+++|-.|-+|+.|.+++=+|++- +|-....++.+ |.....
T Consensus 19 ~~~~v~tGi-sPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Yl----g~Plt~ 93 (521)
T COG1384 19 DEYVVATGI-SPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYL----GMPLTE 93 (521)
T ss_pred CcEEEecCc-CCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHc----CCcccc
Confidence 567776665 89999999999999999999999999999999999998864 23222333322 332222
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy944 307 IGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDW 340 (689)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw 340 (689)
++.. .-.|..|++++...+.+.|..+|+-+.+
T Consensus 94 IPdP--~G~~~Sya~hf~~~f~~~l~~~Gi~~E~ 125 (521)
T COG1384 94 IPDP--FGCCDSYAEHFLRPFEEFLDEFGIEVEF 125 (521)
T ss_pred CCCC--ccccchHHHHHHHHHHHHHHhcCCceEE
Confidence 2211 1246789999999999999999988774
No 160
>KOG1195|consensus
Probab=96.44 E-value=0.042 Score=60.17 Aligned_cols=138 Identities=13% Similarity=0.161 Sum_probs=88.6
Q ss_pred CCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccC---------------------hHHH
Q psy944 232 NPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGI---------------------ATQV 290 (689)
Q Consensus 232 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Gl---------------------pie~ 290 (689)
...++.++-..-||.+-+.|+||.|+.+++-.++...+..|+.|..+-..-+-|. ||+.
T Consensus 107 ~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~h 186 (567)
T KOG1195|consen 107 GSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKH 186 (567)
T ss_pred ccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHH
Confidence 3457788888999999999999999999999999999999999977655443332 2332
Q ss_pred HHHHHHHHHh--ccccc------------ccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHH
Q psy944 291 VVEKKLWREE--KKTRH------------EIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVT 356 (689)
Q Consensus 291 ~~e~~l~~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~ 356 (689)
..+.-..... ...+. +.+.++-...=++|.+..+..+.+..+|+|+.+| .|.-.+..+.+..+
T Consensus 187 L~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD---~y~gESqv~~e~~~ 263 (567)
T KOG1195|consen 187 LFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFD---EYSGESQVSNEKMQ 263 (567)
T ss_pred HHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeee---eccchHHHHHHHHH
Confidence 2211111000 00000 0111111111112344556778888999999999 33334457778899
Q ss_pred HHHHHHHHcCCeeeec
Q psy944 357 EAFVILHEAGDIYRSE 372 (689)
Q Consensus 357 ~~f~~L~~kGliy~~~ 372 (689)
.+...+..+||+....
T Consensus 264 ~~~d~~rs~~l~~e~d 279 (567)
T KOG1195|consen 264 EALDLLRSANLTEEID 279 (567)
T ss_pred HHHHHHHhcCCcccCC
Confidence 9999999988654433
No 161
>KOG1147|consensus
Probab=96.36 E-value=0.01 Score=65.09 Aligned_cols=99 Identities=25% Similarity=0.359 Sum_probs=68.4
Q ss_pred eecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHH
Q psy944 238 VMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVW 317 (689)
Q Consensus 238 ~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 317 (689)
+++-=||-|+|+||||||..+.+.--++ ++.+|. .++-||+..-.-|
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLNqYfa--~~~~G~---LIvRFDDTNPaKE---------------------------- 247 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLNQYFA--QAYQGK---LIVRFDDTNPAKE---------------------------- 247 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHHHHHH--HhcCce---EEEEecCCCcchh----------------------------
Confidence 4455589999999999997665543322 123343 3446776532211
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccc
Q psy944 318 EWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLV 375 (689)
Q Consensus 318 ~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v 375 (689)
..++.+.|.+++.-|||--| ..|...+|-..+...=.+|.+.|..|-...|.
T Consensus 248 --~~eFe~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 248 --NEEFEDVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred --hHHHHHHHHHHHHHhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence 12355778999999999988 34666778888888888999999999876653
No 162
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=96.21 E-value=0.0014 Score=72.08 Aligned_cols=49 Identities=22% Similarity=0.095 Sum_probs=41.2
Q ss_pred CceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 131 HSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 131 ~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
|..+ +--++++..|+|||||+||+|++.|.++-+.++.|||+++...|.
T Consensus 262 P~~~-~YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~ 310 (521)
T COG1384 262 PVPF-VYEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPN 310 (521)
T ss_pred CCCC-ceEEEEecCCcccccCCCcEEcHHHHHHhcCHhHeeeeeeecCCC
Confidence 4443 567777666799999999999999999999999999999977553
No 163
>KOG4426|consensus
Probab=96.11 E-value=0.065 Score=57.48 Aligned_cols=146 Identities=16% Similarity=0.300 Sum_probs=95.8
Q ss_pred CCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccccc----ChHHHHHHH--------------
Q psy944 233 PKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAG----IATQVVVEK-------------- 294 (689)
Q Consensus 233 ~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~G----lpie~~~e~-------------- 294 (689)
..++-++...-||.--.+|+||.|+.+|+|.++|.....|++|++.--.-+-| +-|+...++
T Consensus 186 ~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDL 265 (656)
T KOG4426|consen 186 SVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDL 265 (656)
T ss_pred ceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhH
Confidence 45677788888999999999999999999999999999999998765443333 334433221
Q ss_pred -HHHHHhcccccccCHHHHHHHHH---------------HHH---HHHHHHHHHHHHHhccccccCCccccCChhhHHHH
Q psy944 295 -KLWREEKKTRHEIGREKFIEKVW---------------EWK---KEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAV 355 (689)
Q Consensus 295 -~l~~~~~~~~~~~~~~~~~~~~~---------------~~~---~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v 355 (689)
.+.++++.. -+ ..++|.++.. .|+ +-...++..-..+|.+++.=+ -+.-|+..+
T Consensus 266 QvFYkeSKkr-FD-~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~-----GESFYq~~m 338 (656)
T KOG4426|consen 266 QVFYKESKKR-FD-EDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKER-----GESFYQDRM 338 (656)
T ss_pred HHHHHHHHhc-cC-cCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhc-----chhhhhhHH
Confidence 011111100 00 1233444322 233 233455666778888877622 234677788
Q ss_pred HHHHHHHHHcCCeeeec-ccccccCCCCccc
Q psy944 356 TEAFVILHEAGDIYRSE-RLVHWSCSLKSAI 385 (689)
Q Consensus 356 ~~~f~~L~~kGliy~~~-~~v~w~~~~~t~l 385 (689)
..+.+.|..+|++.... +.+.|-+.|.-+|
T Consensus 339 ~~vveel~~kglvee~~Gr~i~f~~g~~IPL 369 (656)
T KOG4426|consen 339 AEVVEELKSKGLVEEDDGRRIMFPEGCDIPL 369 (656)
T ss_pred HHHHHHHhcCCceeecCCceEeccCCCCcce
Confidence 89999999999998865 5677877777666
No 164
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=95.68 E-value=0.0021 Score=68.59 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=61.0
Q ss_pred CCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccC--hHHHHHHH-HHHHHhcccccccCH
Q psy944 233 PKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGI--ATQVVVEK-KLWREEKKTRHEIGR 309 (689)
Q Consensus 233 ~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Gl--pie~~~e~-~l~~~~~~~~~~~~~ 309 (689)
+++.+++-.|. .|+|.+|||+.+..+..|+++|-.+.+|.+|.+.+.+|+.-- .+-..+-+ .+....|.....++.
T Consensus 21 ~~~~~v~~sG~-sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPd 99 (360)
T PF01921_consen 21 GKEPYVFASGI-SPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPD 99 (360)
T ss_dssp --SEEEEEEEE---SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-
T ss_pred CCccEEEecCC-CCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCC
Confidence 35567776665 899999999999999999999999999999999999988531 01000000 011011111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy944 310 EKFIEKVWEWKKEKGDRIYEQMKLMGSSLDW 340 (689)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw 340 (689)
. | ..+..|++.+...+.+.|..+|+.+.+
T Consensus 100 P-~-G~~~SyaeH~~~~~~~~L~~~gie~e~ 128 (360)
T PF01921_consen 100 P-F-GCHESYAEHFNAPFEEFLDEFGIEYEF 128 (360)
T ss_dssp T-T-SSSSCHHHHHHHHHHHHHHTTT---EE
T ss_pred C-C-CCCccHHHHHHHHHHHHHHHcCCceEE
Confidence 1 1 125678999999999999999998874
No 165
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=95.62 E-value=0.0064 Score=59.35 Aligned_cols=39 Identities=31% Similarity=0.460 Sum_probs=29.3
Q ss_pred cccccCCCCceEEEeeccCccccccchhhcCCCchhhhh
Q psy944 418 FAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKH 456 (689)
Q Consensus 418 ~~~~~~~~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~ 456 (689)
+.|++...+..+-|+||||+||+|.+.|++.|+++-+..
T Consensus 12 i~F~i~~~~~~i~vFTTrpdTifGvtfials~~H~lv~~ 50 (185)
T PF13603_consen 12 IDFKIKGSNEKIEVFTTRPDTIFGVTFIALSPEHPLVKK 50 (185)
T ss_dssp EEEEBTTSSCEEEEEES-GGGGGG--EEEEETTSCHHHH
T ss_pred EEEEecCCCCEEEEEECCcchhhCceEEEECCCCHHHHh
Confidence 445666556689999999999999999999999986543
No 166
>KOG1148|consensus
Probab=94.82 E-value=0.038 Score=61.39 Aligned_cols=97 Identities=25% Similarity=0.279 Sum_probs=56.9
Q ss_pred eeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHH
Q psy944 237 FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKV 316 (689)
Q Consensus 237 f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~ 316 (689)
-+.|-=||-|||.|||||+-.--+.==+|++ +.|..-+ -+|+.. |. .|
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvNFgyAk~--~~G~cyL---RfDDTN-PE---kE----------------------- 295 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINVNFGYAKA--HGGVCYL---RFDDTN-PE---KE----------------------- 295 (764)
T ss_pred eeEEeCCCCCCceeeecchhheeechhhhhh--hCCeEEE---ecCCCC-cc---hh-----------------------
Confidence 3556679999999999998432222223332 3444444 345432 10 00
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeec
Q psy944 317 WEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSE 372 (689)
Q Consensus 317 ~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~ 372 (689)
..++.+.|++...-|| |.-+-.|.+.+|-......=..|.++|+.|--.
T Consensus 296 ---ee~yf~sI~e~V~WLG----~~P~kvTysSDyFdqLy~~av~LIrkG~AYVcH 344 (764)
T KOG1148|consen 296 ---EEEYFESIKEMVAWLG----FEPYKVTYSSDYFDQLYELAVELIRKGKAYVCH 344 (764)
T ss_pred ---hHHHHHHHHHHHHHhC----CCceeeecchhHHHHHHHHHHHHHhcCceeEEe
Confidence 1223355565555555 455567877777766666667789999998643
No 167
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.96 E-value=0.056 Score=62.00 Aligned_cols=54 Identities=31% Similarity=0.409 Sum_probs=43.5
Q ss_pred cccCcCceEEEc---ceeeCCCCceeeeccCCccCchhhhhcCC----------------------hhhHHHHHhhcCc
Q psy944 126 SANGIHSEVFLH---PIVRDAHGRKMSKSLGNVIDPLDVVKGIS----------------------LAGLQGRLLQDSN 179 (689)
Q Consensus 126 ~~~~~~k~v~~h---g~~~~~~g~KmSKS~gn~~~~~~~~~~~~----------------------~d~~r~~l~~~~~ 179 (689)
.+.+.++.++.| |++.+.+|.||||-.|++|+++++++..+ .+++||++++.++
T Consensus 359 ~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~ 437 (577)
T COG0018 359 LGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSR 437 (577)
T ss_pred hcCCCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCC
Confidence 344455555555 66666689999999999999999999988 9999999998765
No 168
>PLN02286 arginine-tRNA ligase
Probab=92.60 E-value=0.079 Score=61.26 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=37.9
Q ss_pred EEEcceeeCCCCceeeeccCCccCchhhhhc-----------------------------CChhhHHHHHhhcCc
Q psy944 134 VFLHPIVRDAHGRKMSKSLGNVIDPLDVVKG-----------------------------ISLAGLQGRLLQDSN 179 (689)
Q Consensus 134 v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~-----------------------------~~~d~~r~~l~~~~~ 179 (689)
++..|+|+..+|+||||-+||+|+++|++++ .|.+++||++|+.++
T Consensus 365 h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~ 439 (576)
T PLN02286 365 HVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNR 439 (576)
T ss_pred EEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCC
Confidence 4678999767899999999999999999994 457778888876544
No 169
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=91.27 E-value=0.092 Score=57.06 Aligned_cols=30 Identities=33% Similarity=0.367 Sum_probs=24.6
Q ss_pred EEcceeeCCCCc-eeeeccCCccCchhhhhc
Q psy944 135 FLHPIVRDAHGR-KMSKSLGNVIDPLDVVKG 164 (689)
Q Consensus 135 ~~hg~~~~~~g~-KmSKS~gn~~~~~~~~~~ 164 (689)
+.+|+++..+|+ |||+.+||++.+++++++
T Consensus 275 ~~~g~vl~~~gk~~mstR~G~~i~l~dllde 305 (354)
T PF00750_consen 275 VSFGVVLLKDGKVKMSTRKGNVITLDDLLDE 305 (354)
T ss_dssp EEE-EEEETTBEESS-TTTTSSTBHHHHHHH
T ss_pred EEEEEEEcCCCCccccCCCCCceEHHHHHHH
Confidence 456888878897 999999999999999993
No 170
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=90.44 E-value=0.12 Score=59.61 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=26.4
Q ss_pred EEEcceeeCCCCceeeeccCCccCchhhhhc
Q psy944 134 VFLHPIVRDAHGRKMSKSLGNVIDPLDVVKG 164 (689)
Q Consensus 134 v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~ 164 (689)
.+..|++. .+|+||||-+||+|.++++++.
T Consensus 359 h~~~g~V~-~~g~kmStR~G~~v~l~dLlde 388 (562)
T PRK12451 359 HVPFGLIL-KDGKKMSTRKGRVVLLEEVLEE 388 (562)
T ss_pred EEeeeeEe-cCCCCCcCCCCCeeEHHHHHHH
Confidence 35678887 6889999999999999999996
No 171
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=83.56 E-value=0.72 Score=50.36 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=30.8
Q ss_pred CceEEE-cceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc
Q psy944 131 HSEVFL-HPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 131 ~k~v~~-hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
|..++. |..+++.+|+|||||.+|.|.+.+ +++.++-.+.+.
T Consensus 247 P~~~~~~~~~I~gLdg~KMSKS~~n~I~L~D-----s~~~I~kKI~~a 289 (398)
T PRK12283 247 PQALLTEASKMPGLDGQKMSKSYGNTIGLRE-----DPESVTKKIRTM 289 (398)
T ss_pred CcccccCCCcccCCCCCcCCCCCCCeeeCcC-----CHHHHHHHHHhC
Confidence 454442 578888899999999999887655 677777666643
No 172
>KOG1149|consensus
Probab=83.43 E-value=4.2 Score=44.33 Aligned_cols=94 Identities=27% Similarity=0.319 Sum_probs=58.6
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Q psy944 243 PPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKE 322 (689)
Q Consensus 243 pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (689)
-|-|||.||+|-+|++...=.+|| ...|.-+++.--+|-. ++ +..
T Consensus 39 APSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq~----------R~-----------------------v~g 83 (524)
T KOG1149|consen 39 APSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQK----------RL-----------------------IRG 83 (524)
T ss_pred cCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEecccccc----------cc-----------------------ccc
Confidence 379999999999999998888887 3567777765555431 11 111
Q ss_pred HHHHHHHHHHHhccccccCCccc-cCCh----hhHHHHHHHHHHHHHcCCeeee
Q psy944 323 KGDRIYEQMKLMGSSLDWDRACF-TMDP----KLSRAVTEAFVILHEAGDIYRS 371 (689)
Q Consensus 323 ~~~~~~~~l~~lGi~~Dw~~~~~-T~d~----~~~~~v~~~f~~L~~kGliy~~ 371 (689)
..+++.+.|+-+|+..|=.-.+- -..| ..-+.-...-.+|.+.|.+|+-
T Consensus 84 s~e~i~~~L~w~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrC 137 (524)
T KOG1149|consen 84 SEEAIYEDLKWANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRC 137 (524)
T ss_pred hHHHHHHHHHhcCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEe
Confidence 12556778888887776221000 0111 2223455566788899999973
No 173
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=82.06 E-value=1.2 Score=46.54 Aligned_cols=24 Identities=42% Similarity=0.541 Sum_probs=20.6
Q ss_pred eEEEcceeeCCCCceeeeccCCcc
Q psy944 133 EVFLHPIVRDAHGRKMSKSLGNVI 156 (689)
Q Consensus 133 ~v~~hg~~~~~~g~KmSKS~gn~~ 156 (689)
-.+.|.++.+.+|+|||||.+|.+
T Consensus 181 ~~l~~~ll~~l~G~KMSKS~~~~~ 204 (269)
T cd00805 181 VGLTTPLLTGLDGGKMSKSEGNAI 204 (269)
T ss_pred EEEeeccccCCCCCcccCCCCCcc
Confidence 345678888899999999999988
No 174
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=81.78 E-value=0.61 Score=51.34 Aligned_cols=29 Identities=34% Similarity=0.368 Sum_probs=21.1
Q ss_pred CceEEE--cceeeCCCCceeeeccCCccCch
Q psy944 131 HSEVFL--HPIVRDAHGRKMSKSLGNVIDPL 159 (689)
Q Consensus 131 ~k~v~~--hg~~~~~~g~KmSKS~gn~~~~~ 159 (689)
|+.++. +..+++.+|+|||||.+|.|.+.
T Consensus 184 Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L~ 214 (431)
T PRK12284 184 PEAVIEESVATLPGLDGRKMSKSYDNTIPLF 214 (431)
T ss_pred CccccccccccccCCCCccccCCCCCEeeec
Confidence 445542 35677788999999999988543
No 175
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=81.42 E-value=0.68 Score=49.74 Aligned_cols=28 Identities=46% Similarity=0.504 Sum_probs=20.7
Q ss_pred CceEE--EcceeeCCCCceeeeccCCccCc
Q psy944 131 HSEVF--LHPIVRDAHGRKMSKSLGNVIDP 158 (689)
Q Consensus 131 ~k~v~--~hg~~~~~~g~KmSKS~gn~~~~ 158 (689)
|..++ .+.++...+|+|||||.+|.|.+
T Consensus 184 P~~~~~~~~~~l~gLdg~KMSKS~~n~I~L 213 (332)
T PRK12556 184 PEYVIQEEGAILPGLDGRKMSKSYGNVIPL 213 (332)
T ss_pred ceeccccccccccCCCCCCCCCCCCCcccc
Confidence 44444 36677778899999999987753
No 176
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=80.48 E-value=1.3 Score=44.90 Aligned_cols=44 Identities=25% Similarity=0.219 Sum_probs=33.2
Q ss_pred EEEc-ceeeCCCCceeeeccCCccCchhhhh-cCChhhHHHHHhhcC
Q psy944 134 VFLH-PIVRDAHGRKMSKSLGNVIDPLDVVK-GISLAGLQGRLLQDS 178 (689)
Q Consensus 134 v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~-~~~~d~~r~~l~~~~ 178 (689)
.+.| +.+++.+|+|||||.++. ++.++.+ ++.+++++-|+..-+
T Consensus 139 ~~~H~pll~~~~g~KLSKr~~~~-~i~~~r~~G~~p~ai~~~l~~lG 184 (230)
T cd00418 139 RFYHFPRLLLEDGTKLSKRKLNT-TLRALRRRGYLPEALRNYLALIG 184 (230)
T ss_pred eEEEeeeeeCCCCCCccCcCCCc-CHHHHHHCCCcHHHHHHHHHHcC
Confidence 3444 777788999999999984 5555544 589999999987543
No 177
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=79.71 E-value=0.75 Score=48.60 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=18.7
Q ss_pred EEEcc--eeeCCCC-ceeeeccCC-ccC
Q psy944 134 VFLHP--IVRDAHG-RKMSKSLGN-VID 157 (689)
Q Consensus 134 v~~hg--~~~~~~g-~KmSKS~gn-~~~ 157 (689)
.+.|. .+++..| +|||||.+| +|.
T Consensus 182 ~~~~~~~~i~gL~g~~KMSkS~~ns~I~ 209 (314)
T COG0180 182 ALISKVARLPGLDGPGKMSKSDPNSAIF 209 (314)
T ss_pred ccccCCCcccCCCCCCcccccCCCCeee
Confidence 33455 8888889 899999999 663
No 178
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=79.14 E-value=4.8 Score=43.90 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=29.3
Q ss_pred CCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcc
Q psy944 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCD 282 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D 282 (689)
.++|.+..|. -|+|.+|+||... -..+.+++. .|+++.+..+-+
T Consensus 64 ~~~~~iytG~-~PSG~lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD~ 107 (368)
T PRK12285 64 GKPFAVYTGF-MPSGPMHIGHKMV---FDELKWHQE-FGANVYIPIADD 107 (368)
T ss_pred CCCeEEEEcc-CCCCCccHHHHHH---HHHHHHHHh-cCCCEEEEecch
Confidence 4567777775 6679999999642 334556666 688876655543
No 179
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=76.85 E-value=1.4 Score=46.06 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=19.7
Q ss_pred EEcceeeCCCCceeeeccCCccCc
Q psy944 135 FLHPIVRDAHGRKMSKSLGNVIDP 158 (689)
Q Consensus 135 ~~hg~~~~~~g~KmSKS~gn~~~~ 158 (689)
+++.++++.+|.|||||.+|.+..
T Consensus 186 l~~p~l~~l~G~KMSKS~~~~i~l 209 (273)
T cd00395 186 LTIPLVTKLDGPKFGKSESGPKWL 209 (273)
T ss_pred EeeccccCCCCCcCCCCCCCCccc
Confidence 344788889999999999998753
No 180
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=76.30 E-value=1.2 Score=49.31 Aligned_cols=42 Identities=24% Similarity=0.139 Sum_probs=29.5
Q ss_pred eEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhh
Q psy944 133 EVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 133 ~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
-.+++..+++.+|.|||||.||.|.+.+= ..+++.++-++++
T Consensus 216 ~~lt~PlL~g~dG~KMsKS~~naI~L~d~--~tsp~~i~qki~~ 257 (410)
T PRK13354 216 FGLTMPLLEGADGTKMGKSAGGAIWLDPE--KTSPYEFYQFWMN 257 (410)
T ss_pred eEeccCCccCCCCCccCCCCCCceeccCC--CCCHHHHHHHHHc
Confidence 34456677788999999999999976553 2455666555554
No 181
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=75.06 E-value=1.5 Score=46.28 Aligned_cols=27 Identities=33% Similarity=0.279 Sum_probs=20.5
Q ss_pred eEEEcceeeCCCCc-eeeeccCC-ccCch
Q psy944 133 EVFLHPIVRDAHGR-KMSKSLGN-VIDPL 159 (689)
Q Consensus 133 ~v~~hg~~~~~~g~-KmSKS~gn-~~~~~ 159 (689)
..+.+.++...+|. |||||.+| .|.+.
T Consensus 183 ~~l~~~~l~~l~G~~KMSKS~~ns~I~L~ 211 (292)
T PF00579_consen 183 AGLTSPLLPGLDGQKKMSKSDPNSAIFLD 211 (292)
T ss_dssp EEEEETCBBSTTSSSBTTTTTTGGS-BTT
T ss_pred hheeeccccccCCccccCccCCccEEEEe
Confidence 45566688889998 99999999 66543
No 182
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=72.42 E-value=3.4 Score=42.18 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=32.0
Q ss_pred EcceeeCCCCceeeeccCCccCchhhhh-cCChhhHHHHHhhc
Q psy944 136 LHPIVRDAHGRKMSKSLGNVIDPLDVVK-GISLAGLQGRLLQD 177 (689)
Q Consensus 136 ~hg~~~~~~g~KmSKS~gn~~~~~~~~~-~~~~d~~r~~l~~~ 177 (689)
-++.+++.+|+||||+.|+ .++..+.+ ++.+++++-|++.-
T Consensus 151 h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~l 192 (239)
T cd00808 151 HLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALL 192 (239)
T ss_pred eeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHc
Confidence 4466778899999999999 45555544 68899999998754
No 183
>PLN02486 aminoacyl-tRNA ligase
Probab=71.89 E-value=13 Score=40.79 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=28.0
Q ss_pred CCceeecCCCCCCCc-cchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 234 KGKFVMVIPPPNVTG-TLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG-~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
+++|++..|. -|+| .+|+||.... ..+..++...|..+....+
T Consensus 71 ~~~~~vYtG~-~PSg~~lHlGHlv~~---~~~~~lQ~~~~~~~~I~ia 114 (383)
T PLN02486 71 GEKFYLYTGR-GPSSEALHLGHLIPF---MFTKYLQDAFKVPLVIQLT 114 (383)
T ss_pred CCCeEEEeCC-CCCCccccHHHHHHH---HHHHHHHHhCCCeEEEEec
Confidence 4578888886 7888 5999996443 3344445555766665543
No 184
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=71.79 E-value=1.9 Score=47.76 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=29.4
Q ss_pred EEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc
Q psy944 135 FLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 135 ~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
+..-.+.+.+|+|||||.||.|.+.+- ..+++.++-++++.
T Consensus 220 l~~plL~~~~G~KMsKS~~naI~L~d~--~tsp~~i~qki~~~ 260 (408)
T PRK05912 220 LTMPLLTGLDGKKMGKSEGNAVWLDEE--KTSPYEMYQKWMNI 260 (408)
T ss_pred EecCCcCCCCCCcccCCCCCceeCCCC--CCCHHHHHHHHhcC
Confidence 345666678999999999999987652 24566666666643
No 185
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=71.64 E-value=8.6 Score=41.34 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=25.8
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
+++.+..|. -|||.+|+||.. .+. .+.++++ .|+++.+..+
T Consensus 29 ~~~~v~~G~-~PTG~lHLG~~~-~~~--~~~~lq~-~g~~~~i~Ia 69 (329)
T PRK08560 29 EEPKAYIGF-EPSGKIHLGHLL-TMN--KLADLQK-AGFKVTVLLA 69 (329)
T ss_pred CCCEEEEcc-CCCCcchhhhhH-HHH--HHHHHHH-CCCeEEEEEc
Confidence 455555554 778999999954 222 2666665 4877655444
No 186
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=66.93 E-value=2.9 Score=44.93 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=21.7
Q ss_pred eEEEcceeeCCCCc--eeeecc-CCccCch
Q psy944 133 EVFLHPIVRDAHGR--KMSKSL-GNVIDPL 159 (689)
Q Consensus 133 ~v~~hg~~~~~~g~--KmSKS~-gn~~~~~ 159 (689)
..+.|.++.+.+|. |||||. +|.|.+.
T Consensus 198 ~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~ 227 (329)
T PRK08560 198 VCIHTPLLTGLDGGGIKMSKSKPGSAIFVH 227 (329)
T ss_pred eEEEcCccCCCCCCCCCCcCCCCCCeeccc
Confidence 44568888888887 999999 8888654
No 187
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=66.23 E-value=4.4 Score=42.51 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=25.1
Q ss_pred EEc--ceeeCCCC--ceeeeccC-CccCchhhhhcCChhhHHHHHh
Q psy944 135 FLH--PIVRDAHG--RKMSKSLG-NVIDPLDVVKGISLAGLQGRLL 175 (689)
Q Consensus 135 ~~h--g~~~~~~g--~KmSKS~g-n~~~~~~~~~~~~~d~~r~~l~ 175 (689)
+.| .++...+| .|||||.+ |.|.+.+ +++.+|-.+.
T Consensus 175 l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d-----~~~~i~~KI~ 215 (280)
T cd00806 175 LLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD-----SPKEIKKKIM 215 (280)
T ss_pred eccCCCccccCCCCCCcccCCCCCCeEEeeC-----CHHHHHHHHH
Confidence 355 77777776 49999998 8987654 5555555444
No 188
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=63.81 E-value=2.5 Score=45.47 Aligned_cols=31 Identities=29% Similarity=0.285 Sum_probs=19.6
Q ss_pred eeCCCCceeeeccCC-ccCchhhhhcCChhhHHHHHh
Q psy944 140 VRDAHGRKMSKSLGN-VIDPLDVVKGISLAGLQGRLL 175 (689)
Q Consensus 140 ~~~~~g~KmSKS~gn-~~~~~~~~~~~~~d~~r~~l~ 175 (689)
+...+|+|||||.+| .|.+.| .++.++-.+.
T Consensus 185 l~gl~~~KMSKS~~~s~I~L~D-----~~e~I~~KI~ 216 (328)
T TIGR00233 185 LMGLSGKKMSKSDPNSAIFLTD-----TPKQIKKKIR 216 (328)
T ss_pred CCCCCCCcCCCCCCCCeEeecC-----CHHHHHHHHH
Confidence 444556899999987 665443 4555554444
No 189
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=63.44 E-value=2.3 Score=46.36 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=24.0
Q ss_pred EcceeeCCCCceeeecc-CCccCchhhhhcCChhhHHHHHh
Q psy944 136 LHPIVRDAHGRKMSKSL-GNVIDPLDVVKGISLAGLQGRLL 175 (689)
Q Consensus 136 ~hg~~~~~~g~KmSKS~-gn~~~~~~~~~~~~~d~~r~~l~ 175 (689)
.|.++...+|.|||||. +|.|.+.| .++.++-.+.
T Consensus 240 ~~~~lpgL~G~KMSkS~~~s~I~L~D-----~p~~I~kKI~ 275 (368)
T PRK12285 240 YHKFMPGLTGGKMSSSKPESAIYLTD-----DPETVKKKIM 275 (368)
T ss_pred hhhcccCCCCCcCCCCCCCCeeeccC-----CHHHHHHHHH
Confidence 45677788999999998 67886554 4444444444
No 190
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=62.21 E-value=4.8 Score=37.39 Aligned_cols=21 Identities=38% Similarity=0.221 Sum_probs=16.6
Q ss_pred ceEEEcceeeCCCCceeeecc
Q psy944 132 SEVFLHPIVRDAHGRKMSKSL 152 (689)
Q Consensus 132 k~v~~hg~~~~~~g~KmSKS~ 152 (689)
-..+.+|+++..+|+|||||+
T Consensus 123 p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 123 PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred ceEEEeCCeECCCCCcCCCCC
Confidence 345567999877889999995
No 191
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=61.47 E-value=3.4 Score=44.44 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=24.6
Q ss_pred cceeeCCCC-ceeeeccCCccCchhhhhcCChhhHHHHHhh
Q psy944 137 HPIVRDAHG-RKMSKSLGNVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 137 hg~~~~~~g-~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
|.++.+.+| .|||||.+|.|.+.| .++.++-.+.+
T Consensus 185 ~~~i~~L~g~~KMSKS~~~~I~L~D-----~pe~I~kKI~~ 220 (333)
T PRK12282 185 AGRLPGLDGKAKMSKSLGNAIYLSD-----DADTIKKKVMS 220 (333)
T ss_pred CCcccCCCCCCcCCCCCCCeeeeeC-----CHHHHHHHHHh
Confidence 456666677 899999999887655 56666555543
No 192
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=60.50 E-value=6.5 Score=43.11 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=25.7
Q ss_pred EEEcceeeCC-CC-ceeeeccCC-ccCchhhhhcCChhhHHHHHhh
Q psy944 134 VFLHPIVRDA-HG-RKMSKSLGN-VIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 134 v~~hg~~~~~-~g-~KmSKS~gn-~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
++.|.++... +| .|||||.+| .|.+.| .++.+|-.+.+
T Consensus 242 ~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D-----spe~I~kKI~k 282 (383)
T PTZ00126 242 ILSHHMLPGLLEGQEKMSKSDPNSAIFMED-----SEEDVNRKIKK 282 (383)
T ss_pred eecccccccCCCCCCCCCcCCCCCeecCCC-----CHHHHHHHHHh
Confidence 3356788777 45 799999977 576554 56666655554
No 193
>PLN02886 aminoacyl-tRNA ligase
Probab=58.68 E-value=9.1 Score=41.93 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=21.2
Q ss_pred ecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEe
Q psy944 239 MVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTL 276 (689)
Q Consensus 239 i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~ 276 (689)
+..|. -|+|.+|+||.++.+ .-..+++. |+++.
T Consensus 49 v~sGi-qPSG~lHLGnylGai--~~~v~lQ~--~~~~~ 81 (389)
T PLN02886 49 VVSGV-QPTGSIHLGNYLGAI--KNWVALQE--TYDTF 81 (389)
T ss_pred EEEEE-CCCCccHHHHHHHHH--HHHHHHhc--cCCEE
Confidence 33443 678999999987665 23444443 77664
No 194
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=56.05 E-value=22 Score=39.51 Aligned_cols=98 Identities=15% Similarity=0.064 Sum_probs=52.2
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHH
Q psy944 245 NVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKG 324 (689)
Q Consensus 245 ~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (689)
.|||.+|+||.++.+.. ..+.+...|+++.+-. -|.|-+-.. . +.++. ++ ..
T Consensus 10 qPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~I-ADlHAlT~~------------~-----dp~~l----r~----~~ 61 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRP--AIAASRQPGVESFYFL-ADYHALIKC------------D-----DPARI----QR----ST 61 (431)
T ss_pred cCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEe-echhhccCC------------C-----CHHHH----HH----HH
Confidence 58999999997766542 2333334577765433 344433210 0 01111 11 12
Q ss_pred HHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 325 DRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 325 ~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
..+...+...|+.-+=...|.-++-.......|++..+-..|.+-|
T Consensus 62 ~e~aa~~LA~GlDPek~~if~QSdvpeh~EL~wiL~~it~~g~L~R 107 (431)
T PRK12284 62 LEIAATWLAAGLDPERVTFYRQSDIPEIPELTWLLTCVAGKGLLNR 107 (431)
T ss_pred HHHHHHHHHhCCCccceEEEECCcchhHHHHHHHHHhhhhHHHHHh
Confidence 3345667778876653345555553334456777776666665544
No 195
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=55.73 E-value=6.5 Score=42.33 Aligned_cols=41 Identities=27% Similarity=0.251 Sum_probs=28.4
Q ss_pred CceEEE-c-ceeeCCCCc--eeeeccC---CccCchhhhhcCChhhHHHHHhh
Q psy944 131 HSEVFL-H-PIVRDAHGR--KMSKSLG---NVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 131 ~k~v~~-h-g~~~~~~g~--KmSKS~g---n~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
|..++. | ..+...+|. |||||.+ |.|...| +++.++-.+.+
T Consensus 173 P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D-----~~~~I~~KI~~ 220 (333)
T PRK00927 173 PEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD-----DPKTIAKKIKK 220 (333)
T ss_pred ChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC-----CHHHHHHHHHh
Confidence 444543 2 567777876 9999998 7887655 66677666654
No 196
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=53.61 E-value=11 Score=40.52 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=20.2
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCC
Q psy944 245 NVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNP 279 (689)
Q Consensus 245 ~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~ 279 (689)
-|||.+|+||..+.+.+ +.+++. ++++.+..
T Consensus 9 ~PTG~lHLG~~~g~~~~--~~~lQ~--~~~~~~~I 39 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKN--WVELQD--EYECFFCI 39 (333)
T ss_pred CCCccchHHhHHHHHHH--HHHHHh--cCCeEEEE
Confidence 58899999998876532 445554 25554443
No 197
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=53.02 E-value=30 Score=37.21 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=25.0
Q ss_pred eeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 237 FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 237 f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
+.+..|. .|||.+|+||..+.+.. ++....|+++.+..+
T Consensus 3 ~~v~~G~-~PTG~~HlG~~l~~~~~----~~~~q~~~~~~i~Ia 41 (328)
T TIGR00233 3 FRVLTGI-QPSGKMHLGHYLGAIQT----KWLQQFGVELFICIA 41 (328)
T ss_pred CEEEEee-CCCcHhHHHHHHHHHHH----HHHHhCCCCEEEEee
Confidence 3444554 68899999998765543 333356887765544
No 198
>PLN02486 aminoacyl-tRNA ligase
Probab=52.84 E-value=9.5 Score=41.82 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=24.8
Q ss_pred EcceeeCCCC--ceeeeccCC-ccCchhhhhcCChhhHHHHHhh
Q psy944 136 LHPIVRDAHG--RKMSKSLGN-VIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 136 ~hg~~~~~~g--~KmSKS~gn-~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
.|.++....| .|||||.+| .|.+.+ .++.++-.+..
T Consensus 252 ~~~~lp~L~g~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 290 (383)
T PLN02486 252 ESRFFPALQGESGKMSASDPNSAIYVTD-----TPKEIKNKINK 290 (383)
T ss_pred ccccccCCCCCCCcCcCcCCCCeeeccC-----CHHHHHHHHhc
Confidence 3466766776 799999987 687665 56666655543
No 199
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=52.78 E-value=30 Score=36.25 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=21.4
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 245 NVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 245 ~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
-|||.+|+||..+.+.. +.+++. .|+++.+..+
T Consensus 7 ~PTG~lHLG~~~~al~~--~~~lQ~-ag~~~~~~Ia 39 (280)
T cd00806 7 QPSGSLHLGHYLGAFRF--WVWLQE-AGYELFFFIA 39 (280)
T ss_pred CCCchhhHHHHHHHHHH--HHHHHh-CCCCEEEEec
Confidence 57899999998875442 223333 3777765544
No 200
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=52.48 E-value=7.6 Score=31.15 Aligned_cols=38 Identities=45% Similarity=0.642 Sum_probs=32.4
Q ss_pred hcCCCeeecccccchhhhhhhchHHHhhhHHHHHHHHH
Q psy944 649 AEDYATKVPENVRTQNSEKLSEAEGELSRLPAALAALK 686 (689)
Q Consensus 649 ~~~~i~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (689)
+.+.+...|..+......++.+++.++..|.++|..||
T Consensus 29 n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 29 NENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp STTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44678889999999999999999999999999999886
No 201
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=50.44 E-value=15 Score=38.24 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=24.2
Q ss_pred CCCc-cchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCc
Q psy944 245 NVTG-TLHLGHALTNAVEDSITRWNRMKGKTTLWNPGC 281 (689)
Q Consensus 245 ~~nG-~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~ 281 (689)
-||| .+|+||.... -.+.+++++ |+++.+..|-
T Consensus 8 ~PTg~~lHLG~~~~~---~~~~~lq~~-g~~~~ilI~D 41 (269)
T cd00805 8 DPTAPSLHLGHLVPL---MKLRDFQQA-GHEVIVLIGD 41 (269)
T ss_pred CCCCCcccHHHHHHH---HHHHHHHHC-CCeEEEEECC
Confidence 5789 8999998742 357777765 9888766654
No 202
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=50.44 E-value=14 Score=38.62 Aligned_cols=32 Identities=25% Similarity=0.522 Sum_probs=22.0
Q ss_pred CCCc-cchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 245 NVTG-TLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 245 ~~nG-~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
-||| .+|+||..+ -..+.+++. .|+++.+..|
T Consensus 7 ~PTg~~lHlGh~~~---l~~~~~lq~-~g~~~~~~I~ 39 (273)
T cd00395 7 DPTADSLHIGHLIG---LLTFRRFQH-AGHRPIFLIG 39 (273)
T ss_pred cCCCCCccHHHHHH---HHHHHHHHH-CCCCEEEEEe
Confidence 4789 699999776 333445554 5888876655
No 203
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=49.09 E-value=10 Score=42.12 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=34.5
Q ss_pred EEEc-ceeeCCCCceeeeccCCccCchhhhh-cCChhhHHHHHhhcC
Q psy944 134 VFLH-PIVRDAHGRKMSKSLGNVIDPLDVVK-GISLAGLQGRLLQDS 178 (689)
Q Consensus 134 v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~-~~~~d~~r~~l~~~~ 178 (689)
.+.| +++++.+|+||||..|.. ++.++.+ +|-+++++-|++..+
T Consensus 221 ~f~Hlpli~~~~g~KLSKR~~~~-~v~~~r~~G~~PeAi~n~l~~lG 266 (433)
T PRK12410 221 TYAHLPIILNEEGKKMSKRDNAS-SVKWLLEQGFLPSAIANYLILLG 266 (433)
T ss_pred eEEEeeeeeCCCCCeeecccChh-hHHHHHHCCCCHHHHHHHHHHhC
Confidence 4555 889999999999998854 4555555 699999999988665
No 204
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=46.95 E-value=20 Score=41.41 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=32.5
Q ss_pred ceEEEc-ceeeCCCCceeeecc-------C--------CccCchhhhhc-CChhhHHHHHhhcC
Q psy944 132 SEVFLH-PIVRDAHGRKMSKSL-------G--------NVIDPLDVVKG-ISLAGLQGRLLQDS 178 (689)
Q Consensus 132 k~v~~h-g~~~~~~g~KmSKS~-------g--------n~~~~~~~~~~-~~~d~~r~~l~~~~ 178 (689)
.-.+.| +.+ ..+|.|||||+ | +..+...+..+ |.++++|.|++..+
T Consensus 323 ~P~~~H~~~L-~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG 385 (567)
T PRK04156 323 YPETIHYGRL-KIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVG 385 (567)
T ss_pred CceEEEccee-cCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344565 555 47999999998 4 23455566554 99999999998543
No 205
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.70 E-value=47 Score=35.32 Aligned_cols=46 Identities=22% Similarity=0.169 Sum_probs=28.4
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCC-eEeeCCCcccccC
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGK-TTLWNPGCDHAGI 286 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~-~V~~~~G~D~~Gl 286 (689)
.++.+.+|. .|+|.+|+||..+.+. .+++...++ ++.+ +=.|.|.+
T Consensus 4 ~~~~vlSG~-~PSG~lHLGny~ga~~----~~v~~q~~~~~~f~-~IaDlha~ 50 (314)
T COG0180 4 KKFRVLSGI-QPSGKLHLGNYLGAIR----NWVLLQEEYYECFF-FIADLHAI 50 (314)
T ss_pred CCceEEecC-CCCCCcchhHhHHHHH----HHHHHhcccCceEE-EEecHHHh
Confidence 355566665 7899999999976543 455555554 5543 33455544
No 206
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=43.58 E-value=12 Score=41.17 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=18.7
Q ss_pred EcceeeCCCCceeeeccCCccCchh
Q psy944 136 LHPIVRDAHGRKMSKSLGNVIDPLD 160 (689)
Q Consensus 136 ~hg~~~~~~g~KmSKS~gn~~~~~~ 160 (689)
...++...+|.|||||.||.|+..+
T Consensus 210 t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 210 TVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred ceeeecCCCCCCccCCCCCcccCCc
Confidence 3345556689999999999987543
No 207
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=43.57 E-value=24 Score=39.16 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=27.5
Q ss_pred CceeecCCCCCCCcc-chhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 235 GKFVMVIPPPNVTGT-LHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~-lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
+++.+..|. -|||. ||+||... -..+.++++ .|+++.+..|
T Consensus 32 ~~~~vy~G~-dPTg~slHlGhlv~---l~~l~~lQ~-~G~~~~~lig 73 (408)
T PRK05912 32 EPLRIYLGF-DPTAPSLHLGHLVP---LLKLRRFQD-AGHKPIALIG 73 (408)
T ss_pred CCCEEEEee-cCCCCCccHHhHHH---HHHHHHHHH-CCCcEEEEEc
Confidence 445566665 67895 99999773 244555554 6888776665
No 208
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=43.11 E-value=32 Score=37.01 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=12.7
Q ss_pred CCCccchhHHHHHHHH
Q psy944 245 NVTGTLHLGHALTNAV 260 (689)
Q Consensus 245 ~~nG~lHiGH~~~~~i 260 (689)
-|||.+|+||.++.+.
T Consensus 11 qPTG~~HLGnylga~k 26 (332)
T PRK12556 11 KPTGYPHLGNYIGAIK 26 (332)
T ss_pred CCCCcchHHHHHHHHH
Confidence 6789999999776543
No 209
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=42.62 E-value=21 Score=39.19 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=27.2
Q ss_pred ceeecCCCCCCCc-cchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 236 KFVMVIPPPNVTG-TLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 236 ~f~i~~~pP~~nG-~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
++.+..|. -||| .||+||... --.+.++++ .|+++.+..|
T Consensus 30 ~~~vy~G~-dPTg~~lHlGh~v~---l~~l~~lq~-~G~~~~ilig 70 (377)
T TIGR00234 30 KIKLYVGF-DPTAPSLHLGHLVP---LLKLRDFQQ-AGHEVIVLLG 70 (377)
T ss_pred CCEEEEee-CCCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEe
Confidence 45555665 6889 899999764 233556665 6888876665
No 210
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=41.91 E-value=17 Score=38.26 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=26.8
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCc
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGC 281 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~ 281 (689)
+++.+..|. -|||.+|+||.... ..+.++++ .|++|.+..|-
T Consensus 4 ~~~~~y~G~-~PTg~lHlG~l~~~---~~~~~lq~-~g~~~~i~iaD 45 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGDLHLGHLVPI---MKLIWLQK-AGFKVIILIAD 45 (292)
T ss_dssp SSEEEEEEE-ESSSS-BHHHHHHH---HHHHHHHH-TTSEEEEEEEH
T ss_pred CCcEEEEeE-CCCCcccchHHHHH---HHHHHHHh-cCCccceEecc
Confidence 455555554 67899999987553 23444444 89988877664
No 211
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=40.88 E-value=31 Score=38.27 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=28.0
Q ss_pred CceeecCCCCCCCc-cchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccc
Q psy944 235 GKFVMVIPPPNVTG-TLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDH 283 (689)
Q Consensus 235 ~~f~i~~~pP~~nG-~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~ 283 (689)
+++.+..|. -||| .||+||... --.+.+++ ..|+++.+..|--+
T Consensus 32 ~~~~iy~G~-dPT~~sLHlGhlv~---l~~l~~lq-~~G~~~~~ligd~t 76 (410)
T PRK13354 32 KPLTLYLGF-DPTAPSLHIGHLVP---LMKLKRFQ-DAGHRPVILIGGFT 76 (410)
T ss_pred CCcEEEEcc-cCCCCCcchhhHHH---HHHHHHHH-HcCCeEEEEEcccc
Confidence 456666665 6788 499999544 22244444 57888877776433
No 212
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=38.87 E-value=33 Score=38.81 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=33.8
Q ss_pred cceeeCCCCceeeeccCCccCchhhhhc-CChhhHHHHHhhcC
Q psy944 137 HPIVRDAHGRKMSKSLGNVIDPLDVVKG-ISLAGLQGRLLQDS 178 (689)
Q Consensus 137 hg~~~~~~g~KmSKS~gn~~~~~~~~~~-~~~d~~r~~l~~~~ 178 (689)
+.++++.+|+||||.+| .+++++++++ |-+++++-|+...|
T Consensus 231 ~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG 272 (470)
T TIGR00464 231 LPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLG 272 (470)
T ss_pred EeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcC
Confidence 36677889999999999 7888888886 57999999887543
No 213
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.49 E-value=16 Score=40.17 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=18.8
Q ss_pred eEEEcceeeCCCCceeeeccCCcc
Q psy944 133 EVFLHPIVRDAHGRKMSKSLGNVI 156 (689)
Q Consensus 133 ~v~~hg~~~~~~g~KmSKS~gn~~ 156 (689)
-.+.+-++.+.+|.|||||.||.+
T Consensus 210 ~~lt~PLL~~ldG~KmgKs~~~a~ 233 (401)
T COG0162 210 VGLTTPLLTGLDGKKMGKSEGGAV 233 (401)
T ss_pred EEEEeccccCCCCCcccccCCCce
Confidence 344557778889999999999933
No 214
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=37.83 E-value=29 Score=39.53 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=33.4
Q ss_pred eEEEcceeeCCCCceeeeccCCccCchhhhh-cCChhhHHHHHhh
Q psy944 133 EVFLHPIVRDAHGRKMSKSLGNVIDPLDVVK-GISLAGLQGRLLQ 176 (689)
Q Consensus 133 ~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~-~~~~d~~r~~l~~ 176 (689)
...-+.++++.+|+||||..|.. .+.++.+ +|-+++++-||+.
T Consensus 226 ~~~H~plv~~~~g~KLSKR~g~~-~i~~~r~~G~~Peai~n~la~ 269 (513)
T PRK14895 226 SMTHIPLIHGADGAKLSKRHGAL-GIEAYKDMGYLPESLCNYLLR 269 (513)
T ss_pred eEEEEEeEEcCCCCccccccCch-hHHHHHHCCCCHHHHHHHHHH
Confidence 44445888889999999999876 4455544 6999999999884
No 215
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=36.41 E-value=36 Score=38.60 Aligned_cols=40 Identities=20% Similarity=0.162 Sum_probs=33.4
Q ss_pred cceeeCCCCceeeeccCCccCchhhhhc-CChhhHHHHHhhc
Q psy944 137 HPIVRDAHGRKMSKSLGNVIDPLDVVKG-ISLAGLQGRLLQD 177 (689)
Q Consensus 137 hg~~~~~~g~KmSKS~gn~~~~~~~~~~-~~~d~~r~~l~~~ 177 (689)
+.++++.+|+||||..| .+++.++++. |-++++.-|+...
T Consensus 241 ~pli~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~l 281 (476)
T PRK01406 241 LPLILGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLALL 281 (476)
T ss_pred eeeeeCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHh
Confidence 36677899999999999 7788888885 6899999888753
No 216
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=35.94 E-value=26 Score=36.12 Aligned_cols=27 Identities=41% Similarity=0.448 Sum_probs=23.1
Q ss_pred hhhhhhhchHHHhhhHHHHHHHHHhhC
Q psy944 663 QNSEKLSEAEGELSRLPAALAALKLIQ 689 (689)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (689)
.-.++|+.||.||..|+++||++-++|
T Consensus 119 ~AlqKIsALEdELs~LRaQIA~IV~~q 145 (253)
T PF05308_consen 119 AALQKISALEDELSRLRAQIAKIVAAQ 145 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344688999999999999999987765
No 217
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=34.27 E-value=27 Score=39.15 Aligned_cols=44 Identities=27% Similarity=0.455 Sum_probs=34.5
Q ss_pred EEEc-ceeeCCCCceeeeccCCccCchhhhh-cCChhhHHHHHhhcC
Q psy944 134 VFLH-PIVRDAHGRKMSKSLGNVIDPLDVVK-GISLAGLQGRLLQDS 178 (689)
Q Consensus 134 v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~-~~~~d~~r~~l~~~~ 178 (689)
.+.| +++++.+|+|+||..|. .++.++.+ +|-+++++-|++.-|
T Consensus 226 ~f~H~pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG 271 (445)
T PRK12558 226 VFAHLSLLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLG 271 (445)
T ss_pred eEEEcccccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHc
Confidence 4455 88888999999999876 45666655 699999999987654
No 218
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=28.85 E-value=36 Score=33.99 Aligned_cols=21 Identities=33% Similarity=0.320 Sum_probs=16.6
Q ss_pred eEEEcceeeCCCCceeeeccC
Q psy944 133 EVFLHPIVRDAHGRKMSKSLG 153 (689)
Q Consensus 133 ~v~~hg~~~~~~g~KmSKS~g 153 (689)
..+.+|+++..+|+||||..|
T Consensus 192 ~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 192 EHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEEEEeEEcCCCCCCCCCCC
Confidence 334569999777999999876
No 219
>KOG2145|consensus
Probab=27.30 E-value=41 Score=34.94 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=23.3
Q ss_pred CCCCceeecCCCCCCCccchhHHHHHHHH
Q psy944 232 NPKGKFVMVIPPPNVTGTLHLGHALTNAV 260 (689)
Q Consensus 232 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~i 260 (689)
...++|+++.|---.++.+|+||....+.
T Consensus 81 eq~kpFyLYTGRGpSS~smHlGHliPFif 109 (397)
T KOG2145|consen 81 EQGKPFYLYTGRGPSSESMHLGHLIPFIF 109 (397)
T ss_pred HcCCceEEEeCCCCCccccccccchhHHH
Confidence 34678999999888899999999866543
No 220
>PLN02627 glutamyl-tRNA synthetase
Probab=27.28 E-value=48 Score=37.95 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=33.4
Q ss_pred EEEc-ceeeCCCCceeeeccCCccCchhhhh-cCChhhHHHHHhhc
Q psy944 134 VFLH-PIVRDAHGRKMSKSLGNVIDPLDVVK-GISLAGLQGRLLQD 177 (689)
Q Consensus 134 v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~-~~~~d~~r~~l~~~ 177 (689)
.+.| .++++.+|+||||..|.+ ...++.+ +|-+++++-|++.-
T Consensus 279 ~f~Hlpli~~~~g~KLSKR~~~~-~v~~~r~~G~~PeAi~nyla~L 323 (535)
T PLN02627 279 RFAHVSLILAPDRSKLSKRHGAT-SVGQFREMGYLPDAMVNYLALL 323 (535)
T ss_pred eEEEccceeCCCCCccccccCCc-cHHHHHHCCCCHHHHHHHHHHh
Confidence 4555 888899999999998754 5666555 68999999888754
No 221
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=26.52 E-value=1.2e+02 Score=33.55 Aligned_cols=15 Identities=47% Similarity=0.565 Sum_probs=12.7
Q ss_pred CCCccchhHHHHHHH
Q psy944 245 NVTGTLHLGHALTNA 259 (689)
Q Consensus 245 ~~nG~lHiGH~~~~~ 259 (689)
-|+|.+|+||.++.+
T Consensus 10 qPSG~~HLGnylG~i 24 (398)
T PRK12283 10 RPTGRLHLGHYHGVL 24 (398)
T ss_pred CCCCcchHHHHHHHH
Confidence 689999999988844
No 222
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=26.31 E-value=54 Score=37.06 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=29.9
Q ss_pred eEEEc-ceeeCCCCceeeeccCCccCchh-hhhcCChhhHHHHHh
Q psy944 133 EVFLH-PIVRDAHGRKMSKSLGNVIDPLD-VVKGISLAGLQGRLL 175 (689)
Q Consensus 133 ~v~~h-g~~~~~~g~KmSKS~gn~~~~~~-~~~~~~~d~~r~~l~ 175 (689)
-.+.| +++++..|+||||+++ .+...+ ...+|.+.+|+-++.
T Consensus 235 P~~~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~a 278 (472)
T COG0008 235 PVYAHLPLLLNEDGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLA 278 (472)
T ss_pred CcEEEeeeeecCCCCeecCccC-ccccchhhhcCCCcHHHHHHHH
Confidence 33444 8888778889999999 555444 346788888877764
No 223
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=25.21 E-value=52 Score=34.83 Aligned_cols=40 Identities=33% Similarity=0.378 Sum_probs=28.1
Q ss_pred eEEEc-ceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhh
Q psy944 133 EVFLH-PIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 133 ~v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
-.+.| +.+++.+|+||||+.+..- +.+ +++.++ +..++..
T Consensus 221 P~y~H~pll~~~~g~kLSKr~~~~~-i~~--~g~~p~-l~~~l~~ 261 (299)
T PRK05710 221 PRYLHLPLVLNADGQKLSKQNGAPA-LDA--AGPLPV-LAAALRF 261 (299)
T ss_pred CeEEEeecccCCCCCcccccCCccc-hhh--cCcCHH-HHHHHHH
Confidence 34555 7888999999999987653 333 677777 6555543
No 224
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=25.02 E-value=51 Score=36.24 Aligned_cols=41 Identities=7% Similarity=0.165 Sum_probs=23.6
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHH-HHHHHHHHhcCCeEeeCCC
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVE-DSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~-D~laRy~rm~G~~V~~~~G 280 (689)
+++.+..|. -|||.+|+||.. +. -.+.+++ -.|++|.+..+
T Consensus 65 ~~~~v~~G~-~PTG~lHLG~g~---i~~~~~~~lq-~~G~~v~~~Ia 106 (383)
T PTZ00126 65 ERPICYDGF-EPSGRMHIAQGI---LKAINVNKLT-KAGCVFVFWVA 106 (383)
T ss_pred CCCEEEEEE-CCCCcccccchH---hHhHHHHHHH-hCCCeEEEEEc
Confidence 344455554 688999999931 22 1223333 34888765554
No 225
>PF05619 DUF787: Borrelia burgdorferi protein of unknown function (DUF787); InterPro: IPR008505 This entry consists of several hypothetical proteins of unknown function from Borrelia species. They may be proteinases as the majority contain a propeptide proteinase inhibitor domain which is associated with both serine and metallopeptidases.
Probab=23.89 E-value=1.5e+02 Score=30.96 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=46.3
Q ss_pred eCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHH
Q psy944 277 WNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVT 356 (689)
Q Consensus 277 ~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~ 356 (689)
|.-|.|+.|.||......... ..|...+..+-|-.. .++-..|..|.++-. .+..|...+.
T Consensus 247 FKEgVdl~g~~IDE~FTy~yi----------KnEai~ELIRIWNkN--nRqNSKLs~Lqlsg~-------r~naYTaaie 307 (362)
T PF05619_consen 247 FKEGVDLSGNPIDEAFTYHYI----------KNEAIKELIRIWNKN--NRQNSKLSALQLSGN-------RDNAYTAAIE 307 (362)
T ss_pred hhhccCcCCCcHHHHHHHHHH----------hhHHHHHHHHHhccc--ccccccchheeccCC-------CCchHHHHHH
Confidence 566788899888655433221 122333444445433 233344555544443 4568889999
Q ss_pred HHHHHHHHcCCeee
Q psy944 357 EAFVILHEAGDIYR 370 (689)
Q Consensus 357 ~~f~~L~~kGliy~ 370 (689)
+.|+++.++|+|..
T Consensus 308 C~lk~f~~rGLIv~ 321 (362)
T PF05619_consen 308 CLLKEFKDRGLIVS 321 (362)
T ss_pred HHHHHHhhcceEEE
Confidence 99999999999854
No 226
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=23.28 E-value=49 Score=35.68 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=12.8
Q ss_pred CCCccchhHHHHHHHH
Q psy944 245 NVTGTLHLGHALTNAV 260 (689)
Q Consensus 245 ~~nG~lHiGH~~~~~i 260 (689)
.|+|.+|+||..+.+.
T Consensus 10 ~PTG~~HLGn~l~~~~ 25 (333)
T PRK12282 10 RPTGKLHLGHYVGSLK 25 (333)
T ss_pred CCCCcchHHHHHHHHH
Confidence 5689999999877554
No 227
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=23.27 E-value=36 Score=40.20 Aligned_cols=39 Identities=26% Similarity=0.257 Sum_probs=24.2
Q ss_pred ceEE-EcceeeCCC-C-ceeeecc-CCccCchhhhhcCChhhHHHHHh
Q psy944 132 SEVF-LHPIVRDAH-G-RKMSKSL-GNVIDPLDVVKGISLAGLQGRLL 175 (689)
Q Consensus 132 k~v~-~hg~~~~~~-g-~KmSKS~-gn~~~~~~~~~~~~~d~~r~~l~ 175 (689)
+.++ .|.++.+.. | .|||||. +|.|.+.| .++.+|-.+.
T Consensus 204 kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D-----spe~I~kKI~ 246 (682)
T PTZ00348 204 KPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED-----TEEDVARKIR 246 (682)
T ss_pred CceecccccCcCCCCCCCcCCCCCCCCeecccC-----CHHHHHHHHH
Confidence 4454 456666665 3 6999999 68887655 4444444443
No 228
>PLN02886 aminoacyl-tRNA ligase
Probab=21.19 E-value=46 Score=36.57 Aligned_cols=18 Identities=44% Similarity=0.468 Sum_probs=11.6
Q ss_pred eeCC-CC-ceeeeccCC---ccC
Q psy944 140 VRDA-HG-RKMSKSLGN---VID 157 (689)
Q Consensus 140 ~~~~-~g-~KmSKS~gn---~~~ 157 (689)
++.. +| .|||||..| .|.
T Consensus 242 i~~L~~g~~KMSKS~p~~~s~I~ 264 (389)
T PLN02886 242 VMSLTDGTSKMSKSAPSDQSRIN 264 (389)
T ss_pred eeeCCCCCCcCCCCCCCCCCeEE
Confidence 4434 44 699999854 554
No 229
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=20.99 E-value=3.4e+02 Score=27.68 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=25.1
Q ss_pred ccccccCCccccCChhhHHHHHHHHHHHHHcCCee
Q psy944 335 GSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIY 369 (689)
Q Consensus 335 Gi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy 369 (689)
|+.+||+....+ ...|..+++++-..|.+.|++.
T Consensus 102 GIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~~l 135 (253)
T cd06545 102 GIDVDLEGPDVT-FGDYLVFIRALYAALKKEGKLL 135 (253)
T ss_pred ceeEEeeccCcc-HhHHHHHHHHHHHHHhhcCcEE
Confidence 899999776443 4577888888888887777643
No 230
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=20.37 E-value=86 Score=37.14 Aligned_cols=39 Identities=8% Similarity=0.040 Sum_probs=22.4
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHHHHHHHH-HHhcCCeEeeC
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRW-NRMKGKTTLWN 278 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy-~rm~G~~V~~~ 278 (689)
+++.+..|. -|||.+|+||. +++ .+..+ ....|+++.+.
T Consensus 31 ~~~rv~sGi-~PTG~lHLGng---~~~-aik~~~~~q~g~~~~~l 70 (682)
T PTZ00348 31 PLIRCYDGF-EPSGRMHIAQG---IFK-AVNVNKCTQAGCEFVFW 70 (682)
T ss_pred CCCEEEEee-CCCCcCeeccH---HHH-HHHHHHHHhCCCeEEEE
Confidence 345566665 78999999993 222 22111 12458776543
Done!