Query psy944
Match_columns 689
No_of_seqs 391 out of 3794
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 19:25:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ffy_A Isoleucyl-tRNA syntheta 100.0 1.3E-82 4.6E-87 755.6 20.9 406 205-671 17-448 (917)
2 1gax_A Valrs, valyl-tRNA synth 100.0 4.6E-80 1.6E-84 727.8 29.5 376 200-671 3-397 (862)
3 1ile_A Ilers, isoleucyl-tRNA s 100.0 6.5E-79 2.2E-83 722.0 21.5 407 204-670 6-440 (821)
4 1wz2_A Leucyl-tRNA synthetase; 100.0 1.4E-76 4.9E-81 710.6 24.6 415 205-672 3-504 (967)
5 1wkb_A Leucyl-tRNA synthetase; 100.0 3.1E-72 1.1E-76 665.6 30.0 414 205-671 3-503 (810)
6 4arc_A Leucine--tRNA ligase; l 100.0 3.7E-67 1.3E-71 615.7 25.3 377 198-641 19-453 (880)
7 2v0c_A Aminoacyl-tRNA syntheta 100.0 3.9E-66 1.3E-70 612.0 21.2 380 205-641 3-435 (878)
8 1wny_A Isoleucyl-tRNA syntheta 100.0 2.1E-35 7.2E-40 287.7 12.7 157 426-624 22-181 (186)
9 1wka_A Valyl-tRNA synthetase; 100.0 2.6E-33 8.8E-38 262.0 13.7 131 419-624 10-144 (147)
10 3o0a_A Leucyl-tRNA synthetase 100.0 1.3E-33 4.5E-38 280.7 6.2 163 427-623 38-214 (219)
11 1gax_A Valrs, valyl-tRNA synth 100.0 4.7E-33 1.6E-37 328.1 9.9 164 1-180 366-561 (862)
12 2ajg_A Leucyl-tRNA synthetase; 100.0 3.4E-32 1.2E-36 267.2 11.9 161 419-623 16-195 (196)
13 2wfg_A Cytosolic leucyl-tRNA s 100.0 6.4E-32 2.2E-36 275.9 12.2 163 424-624 30-250 (261)
14 1ffy_A Isoleucyl-tRNA syntheta 100.0 1.2E-32 4.1E-37 327.3 5.3 169 1-176 419-624 (917)
15 3pz6_A Leurs, leucyl-tRNA synt 100.0 9.7E-32 3.3E-36 272.9 9.3 163 421-622 74-303 (311)
16 2wfd_A Leucyl-tRNA synthetase, 100.0 7.6E-31 2.6E-35 267.1 12.4 159 424-622 27-249 (252)
17 1ile_A Ilers, isoleucyl-tRNA s 100.0 6.9E-32 2.4E-36 319.7 4.4 177 1-180 411-624 (821)
18 3u1f_A Methionyl-tRNA syntheta 100.0 1.9E-30 6.6E-35 295.2 11.5 142 232-392 6-147 (542)
19 4arc_A Leucine--tRNA ligase; l 99.9 6.4E-29 2.2E-33 292.0 8.3 147 31-181 436-673 (880)
20 1rqg_A Methionyl-tRNA syntheta 99.9 4E-28 1.4E-32 282.7 12.9 138 235-391 2-140 (722)
21 2v0c_A Aminoacyl-tRNA syntheta 99.9 4.9E-29 1.7E-33 295.2 5.0 159 21-181 397-671 (878)
22 2x1l_A Methionyl-tRNA syntheta 99.9 1.6E-25 5.4E-30 253.5 13.3 142 232-392 9-150 (524)
23 2csx_A Methionyl-tRNA syntheta 99.9 7.7E-26 2.6E-30 254.4 9.8 139 234-391 4-142 (497)
24 3h99_A Methionyl-tRNA syntheta 99.9 2.7E-25 9.2E-30 253.3 13.3 144 230-392 13-156 (560)
25 2d5b_A Methionyl-tRNA syntheta 99.9 3.9E-25 1.3E-29 249.0 12.7 138 234-390 2-139 (500)
26 3kfl_A Methionyl-tRNA syntheta 99.9 4.4E-24 1.5E-28 242.9 10.8 142 232-392 23-164 (564)
27 4dlp_A Aminoacyl-tRNA syntheta 99.9 1.8E-23 6.1E-28 237.0 13.0 141 233-392 23-163 (536)
28 3u1f_A Methionyl-tRNA syntheta 99.9 3.4E-25 1.2E-29 251.9 -3.1 158 1-180 181-356 (542)
29 1rqg_A Methionyl-tRNA syntheta 99.9 3.7E-24 1.3E-28 249.4 3.5 168 1-180 195-377 (722)
30 3kfl_A Methionyl-tRNA syntheta 99.9 2.4E-24 8.3E-29 245.1 0.6 164 1-179 198-371 (564)
31 1wz2_A Leucyl-tRNA synthetase; 99.9 7.6E-24 2.6E-28 254.2 3.2 163 2-180 475-683 (967)
32 1wkb_A Leucyl-tRNA synthetase; 99.9 3.5E-23 1.2E-27 245.4 5.3 166 2-180 475-683 (810)
33 4dlp_A Aminoacyl-tRNA syntheta 99.9 5.3E-23 1.8E-27 233.1 5.3 153 1-179 192-353 (536)
34 2x1l_A Methionyl-tRNA syntheta 99.9 7.8E-23 2.7E-27 231.4 3.5 158 1-179 180-342 (524)
35 2d5b_A Methionyl-tRNA syntheta 99.8 4.5E-22 1.5E-26 224.1 5.6 155 1-179 166-329 (500)
36 3h99_A Methionyl-tRNA syntheta 99.8 1.4E-22 4.7E-27 230.9 -2.1 160 1-179 210-377 (560)
37 2csx_A Methionyl-tRNA syntheta 99.8 3.2E-21 1.1E-25 216.8 1.4 150 1-179 169-327 (497)
38 3tqo_A Cysteinyl-tRNA syntheta 99.7 8.6E-18 2.9E-22 184.1 14.5 127 236-382 25-152 (462)
39 3sp1_A Cysteinyl-tRNA syntheta 99.7 1.1E-17 3.6E-22 184.2 9.6 124 236-381 44-177 (501)
40 3c8z_A Cysteinyl-tRNA syntheta 99.7 1.5E-16 5.3E-21 174.0 12.1 122 235-379 40-166 (414)
41 1li5_A Cysrs, cysteinyl-tRNA s 99.5 2.3E-14 7.7E-19 158.6 12.0 125 234-381 22-148 (461)
42 1iq0_A Arginyl-tRNA synthetase 99.3 4.7E-12 1.6E-16 144.4 9.4 131 236-370 104-264 (592)
43 2zue_A Arginyl-tRNA synthetase 99.3 8.1E-12 2.8E-16 143.0 11.3 149 234-384 118-311 (629)
44 1irx_A Lysyl-tRNA synthetase; 99.2 1E-12 3.5E-17 148.0 -0.6 123 238-369 22-151 (523)
45 3fnr_A Arginyl-tRNA synthetase 99.2 1.7E-10 5.7E-15 127.1 15.2 138 233-374 28-194 (464)
46 1f7u_A Arginyl-tRNA synthetase 99.1 1.5E-10 5.2E-15 131.6 13.0 141 233-376 141-323 (607)
47 3sp1_A Cysteinyl-tRNA syntheta 99.0 4.1E-11 1.4E-15 132.0 -1.3 84 108-192 260-349 (501)
48 3c8z_A Cysteinyl-tRNA syntheta 99.0 7.8E-11 2.7E-15 128.8 0.3 74 102-176 244-321 (414)
49 1li5_A Cysrs, cysteinyl-tRNA s 98.9 2.7E-10 9.3E-15 125.9 0.6 69 107-177 226-296 (461)
50 3tqo_A Cysteinyl-tRNA syntheta 98.7 2.2E-09 7.6E-14 117.6 0.7 48 130-177 252-299 (462)
51 1irx_A Lysyl-tRNA synthetase; 98.0 2.3E-06 7.8E-11 96.2 3.4 52 127-179 259-311 (523)
52 3fnr_A Arginyl-tRNA synthetase 98.0 2E-06 7E-11 94.6 2.8 52 127-178 261-316 (464)
53 2o5r_A Glutamyl-tRNA synthetas 97.9 2E-05 6.7E-10 87.1 9.0 96 236-370 12-116 (481)
54 1nzj_A Hypothetical protein YA 97.9 1.3E-05 4.6E-10 83.0 6.2 90 243-371 11-101 (298)
55 1qtq_A GLNRS, protein (glutami 97.7 8.1E-05 2.8E-09 82.6 9.7 95 239-371 28-122 (553)
56 3aii_A Glutamyl-tRNA synthetas 97.7 3.1E-05 1.1E-09 85.9 6.0 94 238-370 97-190 (553)
57 1iq0_A Arginyl-tRNA synthetase 97.6 1.5E-05 5.2E-10 90.7 2.0 46 133-179 381-451 (592)
58 3al0_C Glutamyl-tRNA(Gln) amid 97.6 0.00012 4.2E-09 82.6 9.0 95 237-371 130-233 (592)
59 2hz7_A Glutaminyl-tRNA synthet 97.6 8.6E-05 2.9E-09 86.1 7.3 95 239-371 68-162 (851)
60 4g6z_A Glutamate-tRNA ligase; 97.5 0.00015 5E-09 79.8 8.5 90 243-371 31-121 (490)
61 2cfo_A Glutamyl-tRNA synthetas 97.4 0.00014 4.8E-09 80.4 5.8 89 243-370 7-96 (492)
62 2zue_A Arginyl-tRNA synthetase 97.3 6.4E-05 2.2E-09 86.0 2.4 46 133-179 411-485 (629)
63 4gri_A Glutamate--tRNA ligase; 97.2 0.00056 1.9E-08 76.2 8.8 94 243-371 30-128 (512)
64 3afh_A Glutamyl-tRNA synthetas 97.2 0.00069 2.4E-08 74.7 9.1 92 241-371 29-129 (488)
65 1j09_A Glutamyl-tRNA synthetas 97.1 0.00071 2.4E-08 74.3 7.7 93 243-372 7-106 (468)
66 2ja2_A Glutamyl-tRNA synthetas 96.9 0.0021 7E-08 71.0 9.3 90 243-371 12-110 (498)
67 2cyb_A Tyrosyl-tRNA synthetase 94.1 0.023 7.8E-07 59.4 3.2 39 134-177 201-239 (323)
68 2cfo_A Glutamyl-tRNA synthetas 93.0 0.045 1.5E-06 60.4 3.3 44 134-178 233-278 (492)
69 2g36_A Tryptophanyl-tRNA synth 90.9 0.11 3.7E-06 54.6 3.0 42 131-177 188-230 (340)
70 3tzl_A Tryptophanyl-tRNA synth 90.5 0.1 3.5E-06 54.4 2.4 41 131-176 174-216 (322)
71 2yxn_A Tyrosyl-tRNA synthetase 90.4 0.13 4.3E-06 53.7 3.0 42 133-176 221-262 (322)
72 3aii_A Glutamyl-tRNA synthetas 88.4 0.14 4.7E-06 56.9 1.5 43 136-178 318-376 (553)
73 2pid_A Tyrosyl-tRNA synthetase 88.1 0.2 6.7E-06 53.0 2.4 43 133-177 240-282 (356)
74 1h3f_A Tyrosyl-tRNA synthetase 87.4 0.32 1.1E-05 52.6 3.6 42 131-177 215-257 (432)
75 1qtq_A GLNRS, protein (glutami 87.2 0.15 5.2E-06 56.5 1.0 46 131-178 253-314 (553)
76 1y42_X Tyrosyl-tRNA synthetase 87.2 0.3 1E-05 52.2 3.3 42 133-176 279-320 (392)
77 2o5r_A Glutamyl-tRNA synthetas 86.7 0.35 1.2E-05 53.2 3.5 42 135-177 249-292 (481)
78 2ajg_A Leucyl-tRNA synthetase; 85.2 0.62 2.1E-05 44.7 4.0 40 481-520 10-49 (196)
79 2jan_A Tyrosyl-tRNA synthetase 84.2 0.44 1.5E-05 51.5 2.7 44 132-177 216-260 (432)
80 1j09_A Glutamyl-tRNA synthetas 84.2 0.41 1.4E-05 52.4 2.5 43 134-177 229-273 (468)
81 3tzl_A Tryptophanyl-tRNA synth 84.1 0.62 2.1E-05 48.4 3.7 37 245-286 11-47 (322)
82 3afh_A Glutamyl-tRNA synthetas 83.9 0.54 1.9E-05 51.7 3.3 43 134-177 241-285 (488)
83 1jil_A Tyrrs, tyrosyl-tRNA syn 83.7 0.35 1.2E-05 52.2 1.7 43 132-176 216-258 (420)
84 2ts1_A Tyrosyl-tRNA synthetase 83.6 0.33 1.1E-05 52.3 1.4 42 133-176 216-257 (419)
85 1yi8_B Tryptophanyl-tRNA synth 83.6 0.48 1.6E-05 49.9 2.6 41 131-176 197-239 (351)
86 3al0_C Glutamyl-tRNA(Gln) amid 82.6 0.57 1.9E-05 52.8 2.9 43 135-178 346-390 (592)
87 2el7_A Tryptophanyl-tRNA synth 82.5 0.49 1.7E-05 49.5 2.2 35 138-177 185-220 (337)
88 1n3l_A Tyrosyl-tRNA synthetase 81.2 0.45 1.5E-05 50.5 1.3 39 133-176 208-247 (372)
89 2zp1_A Tyrosyl-tRNA synthetase 80.2 0.57 1.9E-05 48.5 1.6 28 133-160 189-217 (314)
90 2hz7_A Glutaminyl-tRNA synthet 79.7 0.58 2E-05 54.5 1.6 42 136-178 297-354 (851)
91 2ja2_A Glutamyl-tRNA synthetas 79.6 1.1 3.7E-05 49.3 3.7 43 134-177 243-287 (498)
92 1f7u_A Arginyl-tRNA synthetase 78.9 0.61 2.1E-05 52.8 1.5 23 147-169 407-429 (607)
93 2cyb_A Tyrosyl-tRNA synthetase 78.6 4.2 0.00014 42.1 7.7 40 236-280 32-71 (323)
94 3jxe_A Tryptophanyl-tRNA synth 77.3 2 6.9E-05 45.7 4.8 43 234-280 71-113 (392)
95 1i6k_A TRPRS, tryptophanyl-tRN 76.7 1.9 6.6E-05 44.8 4.4 32 245-280 9-40 (328)
96 1wny_A Isoleucyl-tRNA syntheta 75.8 1.9 6.6E-05 40.9 3.8 37 484-520 6-48 (186)
97 2dlc_X Tyrosyl-tRNA synthetase 75.6 4 0.00014 43.5 6.7 41 235-280 38-78 (394)
98 2yy5_A Tryptophanyl-tRNA synth 74.6 0.81 2.8E-05 48.1 0.9 30 131-160 182-218 (348)
99 2dlc_X Tyrosyl-tRNA synthetase 74.0 0.99 3.4E-05 48.2 1.4 39 133-176 212-252 (394)
100 1i6k_A TRPRS, tryptophanyl-tRN 73.1 1 3.5E-05 46.9 1.2 30 130-159 171-207 (328)
101 3i05_A Tryptophanyl-tRNA synth 72.4 0.99 3.4E-05 48.2 0.9 39 133-176 254-294 (395)
102 2ip1_A Tryptophanyl-tRNA synth 71.7 1.1 3.9E-05 48.3 1.2 28 133-160 279-309 (432)
103 1r6u_A Tryptophanyl-tRNA synth 71.3 1.2 4E-05 48.2 1.2 27 133-159 286-315 (437)
104 3hzr_A Tryptophanyl-tRNA synth 71.0 1.4 4.8E-05 46.8 1.7 39 133-176 254-294 (386)
105 2cya_A Tyrosyl-tRNA synthetase 70.8 2.9 9.9E-05 44.1 4.1 40 236-280 35-74 (364)
106 1wka_A Valyl-tRNA synthetase; 70.3 3.5 0.00012 37.5 4.0 35 482-517 5-39 (147)
107 3jxe_A Tryptophanyl-tRNA synth 69.3 1.4 4.7E-05 47.0 1.2 26 133-158 237-265 (392)
108 3hv0_A Tryptophanyl-tRNA synth 69.1 1.3 4.4E-05 47.2 0.9 26 133-158 250-278 (393)
109 3vgj_A Tyrosyl-tRNA synthetase 67.1 1.9 6.3E-05 45.7 1.6 26 133-158 231-259 (373)
110 1r6t_A Tryptophanyl-tRNA synth 67.0 1.6 5.6E-05 47.7 1.2 26 134-159 334-362 (477)
111 1n3l_A Tyrosyl-tRNA synthetase 65.7 3.2 0.00011 44.0 3.1 39 237-280 36-74 (372)
112 3sz3_A Tryptophanyl-tRNA synth 65.2 2.7 9.1E-05 43.9 2.3 36 245-285 14-49 (341)
113 3tze_A Tryptophanyl-tRNA synth 63.8 2.1 7.2E-05 45.8 1.3 27 133-159 273-302 (406)
114 2cya_A Tyrosyl-tRNA synthetase 63.4 2 6.9E-05 45.3 1.0 38 134-176 208-263 (364)
115 2cyc_A Tyrosyl-tRNA synthetase 63.2 10 0.00035 40.0 6.5 81 236-339 33-114 (375)
116 3a04_A Tryptophanyl-tRNA synth 62.2 4.5 0.00015 42.7 3.5 42 234-280 68-109 (372)
117 2yy5_A Tryptophanyl-tRNA synth 61.5 4.2 0.00014 42.6 3.0 37 239-280 7-43 (348)
118 3hzr_A Tryptophanyl-tRNA synth 61.0 7.3 0.00025 41.3 4.8 43 234-280 80-122 (386)
119 3n9i_A Tryptophanyl-tRNA synth 60.9 4.4 0.00015 42.3 3.0 36 245-285 23-58 (346)
120 2j5b_A Tyrosyl-tRNA synthetase 58.8 2.8 9.4E-05 44.0 1.1 27 133-159 216-245 (348)
121 3p0j_A Tyrosyl-tRNA synthetase 58.5 12 0.00042 42.7 6.4 45 236-286 40-85 (690)
122 3prh_A Tryptophanyl-tRNA synth 58.3 6.5 0.00022 41.7 3.8 46 235-286 30-79 (388)
123 1nzj_A Hypothetical protein YA 58.1 2.9 9.9E-05 42.8 1.0 20 136-155 216-236 (298)
124 3o0a_A Leucyl-tRNA synthetase 57.7 8.4 0.00029 37.4 4.3 28 495-522 38-65 (219)
125 2cyc_A Tyrosyl-tRNA synthetase 56.7 2.9 9.9E-05 44.3 0.8 38 134-176 220-276 (375)
126 3foc_A Tryptophanyl-tRNA synth 56.6 2.8 9.7E-05 45.3 0.7 25 133-157 317-344 (451)
127 3sz3_A Tryptophanyl-tRNA synth 54.7 2 6.7E-05 44.9 -0.9 28 131-158 181-215 (341)
128 1yi8_B Tryptophanyl-tRNA synth 50.9 9.2 0.00032 40.0 3.5 39 236-279 22-60 (351)
129 3hv0_A Tryptophanyl-tRNA synth 50.7 23 0.00077 37.6 6.5 42 235-280 73-115 (393)
130 2zp1_A Tyrosyl-tRNA synthetase 49.5 9 0.00031 39.4 3.1 40 236-280 28-67 (314)
131 2el7_A Tryptophanyl-tRNA synth 49.1 6.9 0.00024 40.7 2.2 33 245-280 9-42 (337)
132 3i05_A Tryptophanyl-tRNA synth 48.5 6.6 0.00022 41.8 1.9 45 234-282 76-121 (395)
133 4g6z_A Glutamate-tRNA ligase; 48.3 9.1 0.00031 41.9 3.0 44 134-178 250-295 (490)
134 3p0j_A Tyrosyl-tRNA synthetase 48.3 5.1 0.00017 45.9 1.1 36 246-283 390-426 (690)
135 2ip1_A Tryptophanyl-tRNA synth 48.0 8.8 0.0003 41.3 2.9 42 235-280 101-143 (432)
136 1r6u_A Tryptophanyl-tRNA synth 47.8 11 0.00036 40.7 3.4 44 234-281 106-150 (437)
137 1r6t_A Tryptophanyl-tRNA synth 47.0 9.8 0.00034 41.5 3.1 44 234-281 153-197 (477)
138 3tze_A Tryptophanyl-tRNA synth 45.7 9.5 0.00032 40.7 2.6 43 234-280 99-142 (406)
139 2pid_A Tyrosyl-tRNA synthetase 44.3 13 0.00046 38.8 3.5 40 236-280 46-86 (356)
140 2yxn_A Tyrosyl-tRNA synthetase 44.0 14 0.00047 38.1 3.5 40 236-280 33-73 (322)
141 1y42_X Tyrosyl-tRNA synthetase 43.3 14 0.00047 39.3 3.4 40 236-280 64-104 (392)
142 2wfd_A Leucyl-tRNA synthetase, 43.1 12 0.00039 37.3 2.7 27 494-520 29-55 (252)
143 2g36_A Tryptophanyl-tRNA synth 43.1 13 0.00045 38.6 3.2 33 245-280 20-52 (340)
144 1h3f_A Tyrosyl-tRNA synthetase 42.6 14 0.00049 39.6 3.5 42 235-281 36-78 (432)
145 2wfg_A Cytosolic leucyl-tRNA s 42.4 9.4 0.00032 38.1 1.9 27 494-520 32-58 (261)
146 3n9i_A Tryptophanyl-tRNA synth 41.2 6.7 0.00023 40.9 0.6 21 138-158 196-221 (346)
147 2j5b_A Tyrosyl-tRNA synthetase 40.6 16 0.00054 38.1 3.4 41 236-280 40-80 (348)
148 1jil_A Tyrrs, tyrosyl-tRNA syn 40.6 16 0.00056 39.0 3.5 40 237-281 33-73 (420)
149 2jan_A Tyrosyl-tRNA synthetase 39.8 16 0.00055 39.2 3.3 40 236-280 32-72 (432)
150 2ts1_A Tyrosyl-tRNA synthetase 39.5 16 0.00056 39.0 3.3 40 237-281 31-71 (419)
151 3vgj_A Tyrosyl-tRNA synthetase 39.5 18 0.00061 38.1 3.6 43 237-285 57-100 (373)
152 3prh_A Tryptophanyl-tRNA synth 35.4 11 0.00037 40.0 1.0 20 139-158 216-240 (388)
153 3foc_A Tryptophanyl-tRNA synth 34.4 24 0.00081 38.1 3.5 43 234-280 89-132 (451)
154 3a04_A Tryptophanyl-tRNA synth 33.9 13 0.00044 39.2 1.4 25 133-157 242-267 (372)
155 4gri_A Glutamate--tRNA ligase; 26.5 28 0.00094 38.3 2.4 43 134-177 259-303 (512)
156 8tfv_A Protein (thanatin); bac 26.4 26 0.00089 19.8 1.1 9 45-53 4-12 (21)
No 1
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=1.3e-82 Score=755.55 Aligned_cols=406 Identities=22% Similarity=0.344 Sum_probs=359.6
Q ss_pred CchHHHHHHhhhccccccccccccc-cCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccc
Q psy944 205 TDALRFALAAYMSQGERTGRRKSIG-EKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDH 283 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~~~~~~~-~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~ 283 (689)
++++..+|.+|+++|+++++|+... .+.++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|++||||
T Consensus 17 ~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~ 96 (917)
T 1ffy_A 17 RGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDT 96 (917)
T ss_dssp SCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBC
T ss_pred CCChHHHhHHHHHHHHHCCCcccchhhccCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCch
Confidence 5799999999999999999777643 245788999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHH
Q psy944 284 AGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILH 363 (689)
Q Consensus 284 ~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~ 363 (689)
||+|||.++++. |..+.++++++|++.|++|+.++++.|+++|++||+++||+++|.|+||.|+++++|+|.+|+
T Consensus 97 hGlpiE~~a~k~-----G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~ 171 (917)
T 1ffy_A 97 HGLPIEQALTKK-----GVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMA 171 (917)
T ss_dssp CSHHHHHHHHHH-----TCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHc-----CCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHH
Confidence 999999999874 666788999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCC------CCceEEEeeccCc
Q psy944 364 EAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDD------GSGEIVVATTRLE 437 (689)
Q Consensus 364 ~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~Tt~P~ 437 (689)
++|+||++.++|+|||.|+|+||++||++++..+... ++. |++.+ ++.+++|||||||
T Consensus 172 ~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~~--------------~v~--f~~~~~~g~~~~~~~~~i~TTrP~ 235 (917)
T 1ffy_A 172 DKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASI--------------YVA--FNVKDDKGVVDADAKFIIWTTTPW 235 (917)
T ss_dssp HTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEEE--------------ECC--BCCCSSTTGGGTTCCBCCEESCGG
T ss_pred HcCCeEecccceeccCCCCcCcchhhhhcccccCceE--------------EEE--EEecccccccCCCCeEEEEeCCcc
Confidence 9999999999999999999999999999987655431 111 22222 2578999999999
Q ss_pred cccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhcccccc--
Q psy944 438 TLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAV-- 515 (689)
Q Consensus 438 Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~-- 515 (689)
|||||+||||||+++|+... .+++.+++++.+++.+....++.-
T Consensus 236 Tl~~~~av~v~p~~~Y~~v~----------------------------------~~~~~~i~a~~~~~~~~~~~~~~~~~ 281 (917)
T 1ffy_A 236 TIPSNVAITVHPELKYGQYN----------------------------------VNGEKYIIAEALSDAVAEALDWDKAS 281 (917)
T ss_dssp GSSCCBCCCCCTTCCCCCCC----------------------------------TTTTCCCCCHHHHHHHHTTTTCCSSC
T ss_pred hhhhceEEEECCCCceEEEE----------------------------------eCCceeehHHHHHHHHHHhcCcccce
Confidence 99999999999999876421 134567888888888876654321
Q ss_pred --cCcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCcccccCCCC
Q psy944 516 --HPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGE 593 (689)
Q Consensus 516 --~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~~~~~~~~ 593 (689)
...+..|.+|.|+++.||++++.+||++++||++++|||+||+|||||++||+++++||||++++||++|+|+++.|+
T Consensus 282 ~~~~~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~ 361 (917)
T 1ffy_A 282 IKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQ 361 (917)
T ss_dssp CCCCCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSS
T ss_pred eeeeeeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccc
Confidence 234678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hcCCCeeecc
Q psy944 594 FTGMKRFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AEDYATKVPE 658 (689)
Q Consensus 594 ~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~~~i~~~P~ 658 (689)
|+|+++++|+++|++.|+ ++|.+.+.+ ++++++++|||+++ +++|+.++ ++++++|+|+
T Consensus 362 ~~G~~v~~A~~~Ii~~L~----~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~--~~lr~~~l~~i~~~~~~P~ 435 (917)
T 1ffy_A 362 FEGMFYDKANKAVTDLLT----EKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASI--SKVRQDILDAIENTNFKVN 435 (917)
T ss_dssp CSSSCSSHHHHTTGGGSS----HHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECH--HHHHHHHHHHHHTSEESSH
T ss_pred cCCcCHHHHHHHHHHHHH----hCCCccccccccccCCEecCCCCEEEEEeccceEeeH--HHHHHHHHHHHhcCcccCH
Confidence 999999999999999999 888765422 45667899999996 68999887 6778999999
Q ss_pred cccchhhhhhhch
Q psy944 659 NVRTQNSEKLSEA 671 (689)
Q Consensus 659 ~~~~~~~~~~~~~ 671 (689)
+.++++.+++++.
T Consensus 436 ~~~~r~~~~l~~~ 448 (917)
T 1ffy_A 436 WGKTRIYNMVRDR 448 (917)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999998888753
No 2
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=4.6e-80 Score=727.77 Aligned_cols=376 Identities=43% Similarity=0.717 Sum_probs=341.6
Q ss_pred CCCCCCchHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCC
Q psy944 200 IPECGTDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNP 279 (689)
Q Consensus 200 l~~~~~~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~ 279 (689)
|++ +|+|..+|++|+++|++ ++|+.. .+.++++|+|++|||||||.|||||+++++++|+++||+||+||+|+|++
T Consensus 3 ~~~--~y~~~~~E~~~~~~W~~-~~f~~~-~~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~ 78 (862)
T 1gax_A 3 LPK--AYDPKSVEPKWAEKWAK-NPFVAN-PKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLP 78 (862)
T ss_dssp CCS--SCCGGGTHHHHHHHHHH-SCCCCC-TTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred Ccc--CCChHHHHHHHHHHHHh-CCCccC-cCCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCcccccc
Confidence 566 89999999999999999 988765 34567899999999999999999999999999999999999999999999
Q ss_pred CcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHH
Q psy944 280 GCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAF 359 (689)
Q Consensus 280 G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f 359 (689)
||||||+|+|.++++.+. ..|..+.++++++|++.|++|++++.+.|+++|++||+++||+|+|+|+|+.|+++++|+|
T Consensus 79 G~D~~Glp~e~~vek~l~-~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F 157 (862)
T 1gax_A 79 GTDHAGIATQVVVERLLL-KEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAF 157 (862)
T ss_dssp EEBCCTHHHHHHHHTTTT-TTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHH-HcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHH
Confidence 999999999999987664 3577889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCCCceEEEeeccCccc
Q psy944 360 VILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRLETL 439 (689)
Q Consensus 360 ~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Tt~P~Tl 439 (689)
.+|+++|+||++.++|+|||.|+|+||++||++++..+.. ..+.|++.++ .+++|||||||||
T Consensus 158 ~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~g~~----------------~~v~f~~~~~-~~l~v~TTrPeTl 220 (862)
T 1gax_A 158 SRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGKL----------------YTLRYEVEGG-GFIEIATVRPETV 220 (862)
T ss_dssp HHHHTTSSEEEECCEEEEETTTTEEECGGGEEECCEEEEE----------------EEEECCCSSS-CCCEEEESCSGGG
T ss_pred HHHHHCCCEEecccccccCCCcCccccccccccccccceE----------------EEEEEEecCC-CEEEEEeCCcccc
Confidence 9999999999999999999999999999999987765432 1233444443 5899999999999
Q ss_pred cccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhcccccccCcc
Q psy944 440 FADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPED 519 (689)
Q Consensus 440 ~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~ 519 (689)
|||+||||||+++
T Consensus 221 ~g~~avav~P~~~------------------------------------------------------------------- 233 (862)
T 1gax_A 221 FADQAIAVHPEDE------------------------------------------------------------------- 233 (862)
T ss_dssp TTCCCEEECSSCC-------------------------------------------------------------------
T ss_pred ccceEEEECCCcc-------------------------------------------------------------------
Confidence 9999999999842
Q ss_pred cccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCcccccCC--CCCCCC
Q psy944 520 ERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY--GEFTGM 597 (689)
Q Consensus 520 ~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~~~~~~--~~~~G~ 597 (689)
++++|+|+++.+|++++.+||++++||++++|||+||+|||||++||+++++||||+++++|++|+|++++ |+|.|+
T Consensus 234 -ry~~l~G~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl 312 (862)
T 1gax_A 234 -RYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGL 312 (862)
T ss_dssp -TTCSCTTCCCBCTTCCCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSS
T ss_pred -HHHHHcCCEEECCCCCCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCc
Confidence 13578999999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred chhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hc--CCCeeecccc
Q psy944 598 KRFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AE--DYATKVPENV 660 (689)
Q Consensus 598 ~v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~--~~i~~~P~~~ 660 (689)
++++|+++|++.|+ ++|++...+ ++++++++|||+++ +++++.++ ++ +.++|+|+++
T Consensus 313 ~~~~a~~~iv~~L~----~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~--~~~~~~~l~~v~~~~~~~~P~~~ 386 (862)
T 1gax_A 313 DRFEARRKAVELFR----EAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRM--RPLAEEVLKGLRRGDIAFVPERW 386 (862)
T ss_dssp BSSHHHHHHHHHHH----TTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECH--HHHHHHHHHHHHHTCCEESSSHH
T ss_pred CHHHHHHHHHHHHH----hCCCeeeeccccccCCeecCCCCeEEEEecceEEEEh--HHHHHHHHHHHHcCCceEcCHHH
Confidence 99999999999999 999887544 46778899999996 68998886 33 5899999999
Q ss_pred cchhhhhhhch
Q psy944 661 RTQNSEKLSEA 671 (689)
Q Consensus 661 ~~~~~~~~~~~ 671 (689)
++.+.++++++
T Consensus 387 ~~~~~~wl~~l 397 (862)
T 1gax_A 387 KKVNMDWLENV 397 (862)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhcc
Confidence 99999888754
No 3
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=6.5e-79 Score=721.97 Aligned_cols=407 Identities=21% Similarity=0.295 Sum_probs=353.4
Q ss_pred CCchHHHHHHhhhcccccccccccccc-CCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcc
Q psy944 204 GTDALRFALAAYMSQGERTGRRKSIGE-KNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCD 282 (689)
Q Consensus 204 ~~~~~~~iE~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D 282 (689)
.+|++..+|++|+++|+++++|+...+ +.++++|++++|||||||.|||||+++++++|+++||+||+||+|++++|||
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D 85 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD 85 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCccccccccc
Confidence 379999999999999999997776432 3578899999999999999999999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHH
Q psy944 283 HAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVIL 362 (689)
Q Consensus 283 ~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L 362 (689)
|||+|||.++++.++...+..+.++++++|++.|++|+.++.+.|+++|++||+++||+++|.|+||.|+++++|+|.+|
T Consensus 86 ~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L 165 (821)
T 1ile_A 86 THGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNL 165 (821)
T ss_dssp CCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHH
Confidence 99999999998865433333456789999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCeeeecccccccCCCCcccCCCcee--eeeecCCccccccCCCCCCcccceeccccccCC------CCceEEEeec
Q psy944 363 HEAGDIYRSERLVHWSCSLKSAISDIEVD--KVELTGRTPLRVPGYANPVDFGVLASFAYKLDD------GSGEIVVATT 434 (689)
Q Consensus 363 ~~kGliy~~~~~v~w~~~~~t~ls~~ev~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~Tt 434 (689)
+++|+||++.++|+|||.|+|+||++||+ +.+..+. .++++ |++.+ .+.+++||||
T Consensus 166 ~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~~--------------~~~v~--f~~~~~~~~~~~~~~l~v~TT 229 (821)
T 1ile_A 166 FDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDP--------------SVYVR--FPLKEPKKLGLEKASLLIWTT 229 (821)
T ss_dssp HHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEEEE--------------EEEEE--EEBSSGGGGTCSSEEEEEEES
T ss_pred HHcCCeeecCcceEecCCCCCcccHhHhhcCcccccCc--------------eEEEE--EEecCCcccCCCCCEEEEEcC
Confidence 99999999999999999999999999994 5544332 22333 33333 2579999999
Q ss_pred cCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHHHhhccccc
Q psy944 435 RLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVA 514 (689)
Q Consensus 435 ~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~ 514 (689)
||||||||+||||||+++|+.. . .+++.+++++.+++.+.+.. ..
T Consensus 230 rP~Tl~g~~av~v~p~~~y~~~--------------------------------~--~~~~~~i~a~~~~~~~~~~~-~~ 274 (821)
T 1ile_A 230 TPWTLPGNVAAAVHPEYTYAAF--------------------------------Q--VGDEALILEEGLGRKLLGEG-TQ 274 (821)
T ss_dssp CGGGGGGCCCEEECTTSCEEEE--------------------------------E--ETTEEEEEETTHHHHHTCTT-SC
T ss_pred CChhhhhcEEEEECCCCceeEE--------------------------------E--cCCcEEEehHHHHHHHHhhC-cE
Confidence 9999999999999999886531 1 24678999999999887642 11
Q ss_pred ccCcccccccccCceeecCcC---CCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccCCcccccCC
Q psy944 515 VHPEDERYKHLVGKLLVHPFC---ERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY 591 (689)
Q Consensus 515 ~~~~~~~~~~l~g~~~~~P~~---~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~~G~~~~~~ 591 (689)
...+.+|++|+|+++.||+. ++.+||++++||++++|||+||+|||||++||++|++||||++++||++|+|+++
T Consensus 275 -~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~- 352 (821)
T 1ile_A 275 -VLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE- 352 (821)
T ss_dssp -EEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSG-
T ss_pred -EEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCccc-
Confidence 12467899999999999996 8899999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCchhhhHHHHHHHhhccccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hcCCCeee
Q psy944 592 GEFTGMKRFDARTRVTELISLSISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AEDYATKV 656 (689)
Q Consensus 592 ~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~~~i~~~ 656 (689)
+ |+|+.+++|+++|++.|+ ++|++...+ ++++++++|||+++ ++++++++ +++.++|+
T Consensus 353 ~-~~G~~~~~a~~~i~~~L~----~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~--~~~~~~~~~~~~~~~~~ 425 (821)
T 1ile_A 353 P-FKGLYFREANRAILRDLR----GRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKN--TLFKDELIRNNQEIHWV 425 (821)
T ss_dssp G-GTTCBHHHHHHHHHHHHH----HTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECG--GGGHHHHHHHHHHSEES
T ss_pred C-cCCCCHHHHHHHHHHHHH----hCCCeeeeecccccCCEecCCCCEEEEEecchhhhch--HHHHHHHHHHhcCeEEE
Confidence 7 999999999999999999 999886543 45667899999997 67998887 56789999
Q ss_pred ccccc-chhhhhhhc
Q psy944 657 PENVR-TQNSEKLSE 670 (689)
Q Consensus 657 P~~~~-~~~~~~~~~ 670 (689)
|++++ +++.++++.
T Consensus 426 P~~~~~~~~~~~l~~ 440 (821)
T 1ile_A 426 PPHIKEGRYGEWLKN 440 (821)
T ss_dssp SGGGTTTTTHHHHHT
T ss_pred CchhhHhHHHHHHhC
Confidence 99995 467676654
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-76 Score=710.61 Aligned_cols=415 Identities=20% Similarity=0.260 Sum_probs=332.8
Q ss_pred CchHHHHHHhhhcccccccccccccc-CCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccc
Q psy944 205 TDALRFALAAYMSQGERTGRRKSIGE-KNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDH 283 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~ 283 (689)
.|+|..+|++||++|+++++|+...+ ..++++|++++|||||||.|||||++|++++|+++||+||+||+|+|++||||
T Consensus 3 ~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~ 82 (967)
T 1wz2_A 3 ELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHI 82 (967)
T ss_dssp -CCCHHHHHHHHHHHHHHTTTSCCGGGSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBC
T ss_pred CCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCC
Confidence 68899999999999999998776533 12238999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHhcc------cccccCHHHH--HHHHHHHHHHHHHHHHHHHHHhccccccCCccccCC--hhhHH
Q psy944 284 AGIATQVVVEKKLWREEKK------TRHEIGREKF--IEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMD--PKLSR 353 (689)
Q Consensus 284 ~Glpie~~~e~~l~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d--~~~~~ 353 (689)
||+|++..+++. ...... ....++++++ ...|++|+.++.+.++++|++||+++||+|+|.|+| |.|++
T Consensus 83 ~GlPie~~a~~~-~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~ 161 (967)
T 1wz2_A 83 TGSPIVGIAERI-KNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSK 161 (967)
T ss_dssp CSSHHHHHHHHH-HTTCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHH
T ss_pred CCcHHHHHHHHh-hccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHH
Confidence 999999988742 110000 0112333332 236999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCC--CceEEE
Q psy944 354 AVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDG--SGEIVV 431 (689)
Q Consensus 354 ~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~ 431 (689)
+++|+|.+|+++|+||++.++|+|||.|+|+||++||++.+.. ..+.+..+.|++.+. +.+++|
T Consensus 162 ~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~--------------~~~~~~~v~f~~~~~~~~~~l~i 227 (967)
T 1wz2_A 162 FIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDV--------------PILDYIIIKFELRENGEVIYLPA 227 (967)
T ss_dssp HHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCC--------------CEECCEEEEEECCCSSSCCEEEE
T ss_pred HHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCc--------------eeceeEEEEEEecCCCCceEEEE
Confidence 9999999999999999999999999999999999999764321 112222334555443 378999
Q ss_pred eeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeec--CCceEEEEeccHHHHhh
Q psy944 432 ATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLED--GSGEIVVATTRLETLFA 509 (689)
Q Consensus 432 ~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~--~~~~~~i~~~~~e~~~~ 509 (689)
|||||||||||+||||||+++|+.. .+.+ .++.+++++.+.+.+..
T Consensus 228 ~TTrPeTl~g~~avav~P~~~Y~~~--------------------------------~~~~~~~~~~~i~a~~~~~~~~~ 275 (967)
T 1wz2_A 228 ATLRPETVYGVTNMWVNPNATYVKA--------------------------------KVRRKDKEETWIVSKEAAYKLSF 275 (967)
T ss_dssp EESCGGGGGGCCEEEECSSSCEEEE--------------------------------EEECSSCEEEEEEEHHHHHHHHH
T ss_pred EcCCchHhhhheEEEECCCCcEEEE--------------------------------EecCCCcceeeehHHHHHHHHHh
Confidence 9999999999999999999887642 1111 12678888877776643
Q ss_pred cccccccCcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHH----------HHHcCCC---
Q psy944 510 DVAVAVHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEV----------AQRLNLP--- 576 (689)
Q Consensus 510 ~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~----------~~~~~l~--- 576 (689)
...-.....+.+|++|+|++|.||++++.+||++++||++++|||+||+|||||++||.+ +++||||
T Consensus 276 ~~~~~~~~~~~~G~~l~G~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~ 355 (967)
T 1wz2_A 276 QDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRI 355 (967)
T ss_dssp SSCEEEEEEECCSSTTSSCEEECSSSSCEEEEEECSSCCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCCCCC
T ss_pred hccCcEEEEEEEchhhcCCEEECCCCCCceEEEecccccCCCCcccEEeecCCCHHHHHHHHhhccchhHHHHcCCchhh
Confidence 211011124578999999999999999999999999999999999999999999999985 5778877
Q ss_pred -----ceeecc-----------------------C----------------CcccccCCCCCCCCchhhhHHHHHHHhhc
Q psy944 577 -----LITVFN-----------------------E----------------EGVIIGDYGEFTGMKRFDARTRVTELISL 612 (689)
Q Consensus 577 -----i~~~id-----------------------~----------------~G~~~~~~~~~~G~~v~~a~~~i~~~L~~ 612 (689)
++++|+ + +|+|+ +|+|+|+.+++|++.|++.|+
T Consensus 356 ~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~--~g~~~G~~v~ea~~~i~~~L~- 432 (967)
T 1wz2_A 356 VENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEML- 432 (967)
T ss_dssp C----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCC--SSSSCSSBHHHHTTTTHHHHH-
T ss_pred cccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEe--ccCcCCcCHHHHHHHHHHHHH-
Confidence 676652 1 68887 789999999999999999999
Q ss_pred cccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hcCCCeeecccccchhhhhhhchH
Q psy944 613 SISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AEDYATKVPENVRTQNSEKLSEAE 672 (689)
Q Consensus 613 ~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~~~i~~~P~~~~~~~~~~~~~~~ 672 (689)
++|++.... ++.+.+++|||++++..+||++++ +++.++|+|++.++.+.++++.+.
T Consensus 433 ---~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~~~~~~~~~~l~~l~ 504 (967)
T 1wz2_A 433 ---EKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLD 504 (967)
T ss_dssp ---HHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESSTTHHHHHHHHHSCC
T ss_pred ---hCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeCccccchHHHhhhccc
Confidence 888765322 234436999999997667999887 678899999999999888886553
No 5
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.1e-72 Score=665.62 Aligned_cols=414 Identities=20% Similarity=0.259 Sum_probs=329.9
Q ss_pred CchHHHHHHhhhcccccccccccccc-CCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccc
Q psy944 205 TDALRFALAAYMSQGERTGRRKSIGE-KNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDH 283 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~ 283 (689)
.|+|..+|++||++|+++++|+...+ +.++++|+|++|||||||.|||||++|++++|+++||+||+||+|++++||||
T Consensus 3 ~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~ 82 (810)
T 1wkb_A 3 ELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHI 82 (810)
T ss_dssp -CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBC
T ss_pred CCCHHHHHHHHHHHHHhCCCcccCchhcCCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCC
Confidence 68999999999999999997776433 23478999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHhcc------cccccCHHHH--HHHHHHHHHHHHHHHHHHHHHhccccccCCccccCC--hhhHH
Q psy944 284 AGIATQVVVEKKLWREEKK------TRHEIGREKF--IEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMD--PKLSR 353 (689)
Q Consensus 284 ~Glpie~~~e~~l~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d--~~~~~ 353 (689)
||+|++..+++.. ..... ....+.++++ ...|++|++++.+.|+++|++||+++||+++|+|+| +.|++
T Consensus 83 ~G~pie~~a~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~ 161 (810)
T 1wkb_A 83 TGSPIVGIAERIK-NRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSK 161 (810)
T ss_dssp CBSHHHHHHHHHH-TTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHH
T ss_pred CCChHHHHHHHhc-ccCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHH
Confidence 9999998876421 00000 0012233332 236899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHcCCeeeecccccccCCCCcccCCCceeeeeecCCccccccCCCCCCcccceeccccccCCC--CceEEE
Q psy944 354 AVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDG--SGEIVV 431 (689)
Q Consensus 354 ~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~ 431 (689)
.++++|.+|+++|+||++.++|+|||.|+|+||++||++.+. +..+.+..+.|++.+. +.+++|
T Consensus 162 ~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~--------------~~~~~~~~v~f~~~~~~~~~~l~v 227 (810)
T 1wkb_A 162 FIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGED--------------VPILDYIIIKFELRENGEVIYLPA 227 (810)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSS--------------CCEEEEEEEEEECCSSCSCCEEEE
T ss_pred HHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCC--------------CccceeEEEEEEccCCCCceEEEE
Confidence 999999999999999999999999999999999999976431 1222233334555443 378999
Q ss_pred eeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeec--CCceEEEEeccHHHHhh
Q psy944 432 ATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLED--GSGEIVVATTRLETLFA 509 (689)
Q Consensus 432 ~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~--~~~~~~i~~~~~e~~~~ 509 (689)
|||||||||||+||||||+++|+.+ .+.+ .++.++++..+.+.+..
T Consensus 228 ~TTrP~Tl~g~~av~v~P~~~y~~~--------------------------------~~~~~~~~~~~i~~~~~~~~~~~ 275 (810)
T 1wkb_A 228 ATLRPETVYGVTNMWVNPNATYVKA--------------------------------KVRRKDKEETWIVSKEAAYKLSF 275 (810)
T ss_dssp EESCGGGGGGCCEEEECTTSCEEEE--------------------------------EEEETTEEEEEEEEHHHHHHHTT
T ss_pred EcCCchHhhhhhEEEECCCCcEEEE--------------------------------EecCCCcceeeeeHHHHHHHHHh
Confidence 9999999999999999999887642 1111 12567888777766533
Q ss_pred cccccccCcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHH----------HHHcCCC---
Q psy944 510 DVAVAVHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEV----------AQRLNLP--- 576 (689)
Q Consensus 510 ~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~----------~~~~~l~--- 576 (689)
...-.....+.+|.+|+|+++.||++++.+||++++||++++|||+||+|||||++||.+ |++||||
T Consensus 276 ~~~~~~~~~~~~G~~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~ 355 (810)
T 1wkb_A 276 QDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRI 355 (810)
T ss_dssp SSCEEEEEEECTTTTTTTCEEECSSSCCEEEEEECTTSCTTSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCC
T ss_pred hhcceEEEEEEEchhhcCCEEECCCCCCeeEEEecCcccCCCCceeEEeCCCCCHHHHHHHHhhccchhHHHHcCCChhh
Confidence 210001124567899999999999999999999999999999999999999999999986 4678877
Q ss_pred -----ceeeccC---------------------------------------CcccccCCCCCCCCchhhhHHHHHHHhhc
Q psy944 577 -----LITVFNE---------------------------------------EGVIIGDYGEFTGMKRFDARTRVTELISL 612 (689)
Q Consensus 577 -----i~~~id~---------------------------------------~G~~~~~~~~~~G~~v~~a~~~i~~~L~~ 612 (689)
++++|+. +|+|+ .|+|+|+.+++|++.|++.|+
T Consensus 356 ~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~--~g~~~G~~v~~a~~~i~~~L~- 432 (810)
T 1wkb_A 356 VENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEML- 432 (810)
T ss_dssp C----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEEC--SGGGTTEEHHHHHHHHHHHHH-
T ss_pred cccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEe--ccCcCCeEHHHhHHHHHHHHH-
Confidence 7777632 57777 788999999999999999999
Q ss_pred cccccCceeeeE--------------EeeeeecccccccCcHHHHHHHHH-hcCCCeeecccccchhhhhhhch
Q psy944 613 SISSQGLIKVDK--------------EIERLNKKEEYLKQVIAKLKDQAA-AEDYATKVPENVRTQNSEKLSEA 671 (689)
Q Consensus 613 ~~~~~g~~~~~~--------------~i~~l~~~QWFi~~~~~~~k~~~~-~~~~i~~~P~~~~~~~~~~~~~~ 671 (689)
++|++.... ++.+++++|||++++..++|++++ .++.++|+|++.++.+.++++.+
T Consensus 433 ---~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~l~~l 503 (810)
T 1wkb_A 433 ---EKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWL 503 (810)
T ss_dssp ---TTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEEESGGGHHHHHHHHHHC
T ss_pred ---hCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEEECcchhchHHHHhhcc
Confidence 999875332 233336899999996657998887 56789999999999888887654
No 6
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=3.7e-67 Score=615.71 Aligned_cols=377 Identities=23% Similarity=0.368 Sum_probs=284.7
Q ss_pred CCCCCCCCchHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEee
Q psy944 198 QGIPECGTDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLW 277 (689)
Q Consensus 198 ~~l~~~~~~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~ 277 (689)
..|++ +|+|+.+|.+||++|+++++|+.. .+.++++|++++|||||||.|||||+++++++|+++||+||+||+|++
T Consensus 19 ~~m~~--~y~~~~iE~kw~~~W~~~~~f~~~-~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~ 95 (880)
T 4arc_A 19 SHMQE--QYRPEEIESKVQLHWDEKRTFEVT-EDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQ 95 (880)
T ss_dssp --CCS--SCCHHHHHHHHHHHHHHTTTTCCC-CCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEEC
T ss_pred ccccc--cCChHHHHHHHHHHHHhcCCcccC-CcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEE
Confidence 34677 899999999999999999988764 345678999999999999999999999999999999999999999999
Q ss_pred CCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHH
Q psy944 278 NPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTE 357 (689)
Q Consensus 278 ~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~ 357 (689)
++|||+||+|++.++.+ .|.. +++|+.++++.|+++|++||+++||++++.|++|.|++++++
T Consensus 96 ~~G~D~~Glpie~~a~~-----~g~~------------p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~ 158 (880)
T 4arc_A 96 PIGWDAFGLPAEGAAVK-----NNTA------------PAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQK 158 (880)
T ss_dssp CCEECCCSTHHHHHHHH-----TTSC------------HHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHH
T ss_pred ecCccccCcHHHHHHHH-----cCCC------------HHHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHH
Confidence 99999999999987754 2322 347888899999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeeeecccccccCCCCcccCCCce------------eeeeecCCccccccCCCCCC--------cc-----
Q psy944 358 AFVILHEAGDIYRSERLVHWSCSLKSAISDIEV------------DKVELTGRTPLRVPGYANPV--------DF----- 412 (689)
Q Consensus 358 ~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev------------~~~~~~~~~~~~~~~~~~~~--------~~----- 412 (689)
+|.+|+++|+||++.++|+|||.|+|+||++|| ++++..+ .+++++.|++.. ++
T Consensus 159 ~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~-~f~~i~~y~~~Ll~~l~~~~~wp~~v~ 237 (880)
T 4arc_A 159 FFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQ-WFIKITAYADELLNDLDKLDHWPDTVK 237 (880)
T ss_dssp HHHHHHHTTCEEEEEECC------------------------------CEEE-EEECGGGGHHHHHHHGGGCTTSCHHHH
T ss_pred HHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccc-eEEeechhHHHHHHHHhhcccccHHHH
Confidence 999999999999999999999999999999766 3333332 234444443211 00
Q ss_pred ---------cceeccccccCCCCceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCccccee
Q psy944 413 ---------GVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVL 483 (689)
Q Consensus 413 ---------~~~~~~~~~~~~~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (689)
+....+.|++.+.+.++.|||||||||||+++|||+|+++|+.+......
T Consensus 238 ~~~~~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~--------------------- 296 (880)
T 4arc_A 238 TMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNP--------------------- 296 (880)
T ss_dssp HHHHHHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCH---------------------
T ss_pred HHHHhhhccccceEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChH---------------------
Confidence 11233456666666789999999999999999999999999876542100
Q ss_pred eeEeEEeecCCceEEEEeccHHHHhhcc------cccccCcccccccccCceeecCcCCCceeeeeCCcccccCCCcceE
Q psy944 484 ASFAYKLEDGSGEIVVATTRLETLFADV------AVAVHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVK 557 (689)
Q Consensus 484 ~~~~y~~~~~~~~~~i~~~~~e~~~~~~------~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~ 557 (689)
.++.+.... .......+..| .++|++++||++++.+||+.++||++++|||+||
T Consensus 297 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~g~~~~~P~~~~~ipi~~~~yV~~~~GTGaV~ 356 (880)
T 4arc_A 297 -------------------ELAAFIDECRNTKVAEAEMATMEKKG-VDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVM 356 (880)
T ss_dssp -------------------HHHHHHTC----------------CE-EEEEEEEECTTTCCEEEEEEETTSCSSSTTSEEE
T ss_pred -------------------HHHHHHHHHhccCchhhhhccceeec-cccCcEEecCCCCCEeEEEEeCccccCCCCceEE
Confidence 000000000 00000012233 3789999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHcCCCceeeccC---------------CcccccCCCCCCCCchhhhHHHHHHHhhccccccCceee
Q psy944 558 ISPGHDHNDYEVAQRLNLPLITVFNE---------------EGVIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIKV 622 (689)
Q Consensus 558 ~~Pah~~~D~~~~~~~~l~i~~~id~---------------~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~ 622 (689)
+|||||++||+++++||||++++|+. +|++. +++.|+||++++|+++|++.|+ ++|++..
T Consensus 357 ~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~-ns~~~~Gl~~~eA~~~ii~~L~----~~g~~~~ 431 (880)
T 4arc_A 357 AVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLF-NSGEFNGLDHEAAFNAIADKLT----AMGVGER 431 (880)
T ss_dssp ECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBC-SSGGGTTCCHHHHHHHHHHHHH----HTTSEEE
T ss_pred EccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceee-cCcccCCCCHHHHHHHHHHHHH----HcCCcce
Confidence 99999999999999999999998852 45554 5789999999999999999999 9999765
Q ss_pred eE---EeeeeecccccccCcHH
Q psy944 623 DK---EIERLNKKEEYLKQVIA 641 (689)
Q Consensus 623 ~~---~i~~l~~~QWFi~~~~~ 641 (689)
.. .....+++|-|....++
T Consensus 432 ~v~yrlrDW~iSRQRyWG~PIP 453 (880)
T 4arc_A 432 KVNYRLRDWGVSRQRYWGAPIP 453 (880)
T ss_dssp EEEESCCCEECEESCSSSCBCC
T ss_pred eEEEEcccceeeeeeccCCcce
Confidence 43 12345677877776544
No 7
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=3.9e-66 Score=611.96 Aligned_cols=380 Identities=24% Similarity=0.368 Sum_probs=295.5
Q ss_pred CchHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccc
Q psy944 205 TDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHA 284 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~ 284 (689)
+|+|..+|++||++|+++++|+....+.++++|+++++||||||.|||||+++++++|+++||+||+||+|++++|||||
T Consensus 3 ~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~ 82 (878)
T 2v0c_A 3 KYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAF 82 (878)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCCSCCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCS
T ss_pred CCCHHHHHHHHHHHHHHcCCcccCcccCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcc
Confidence 58899999999999999998776532456788999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHH
Q psy944 285 GIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHE 364 (689)
Q Consensus 285 Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~ 364 (689)
|+||+.++++ .|.. +++|++++++.|+++|++||+++||+++|.|+++.|.+.++++|.+|++
T Consensus 83 Glpie~~a~k-----~g~~------------~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~ 145 (878)
T 2v0c_A 83 GLPAENAALK-----FGVH------------PKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWE 145 (878)
T ss_dssp SHHHHHHHHH-----TTCC------------HHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-----cCCC------------HHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHH
Confidence 9999988764 2322 3578999999999999999999999999999999999999999999999
Q ss_pred cCCeeeecccccccCCCCcccCCCceeeeeec---CC---------ccccccCCCCCC-------cc-------------
Q psy944 365 AGDIYRSERLVHWSCSLKSAISDIEVDKVELT---GR---------TPLRVPGYANPV-------DF------------- 412 (689)
Q Consensus 365 kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~~---~~---------~~~~~~~~~~~~-------~~------------- 412 (689)
+|+||++.++|+|||.|+|+||++||+..... +. .+++++.|++.. ++
T Consensus 146 kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~ 225 (878)
T 2v0c_A 146 KGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIG 225 (878)
T ss_dssp TTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHC
T ss_pred CCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhc
Confidence 99999999999999999999999999642211 11 012233322110 00
Q ss_pred -cceeccccccCCCCceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEee
Q psy944 413 -GVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLE 491 (689)
Q Consensus 413 -~~~~~~~~~~~~~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 491 (689)
+....+.|++.+.+.+++||||||||||||+||||+|+++|+.+.+.... .
T Consensus 226 ~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~-----------------~----------- 277 (878)
T 2v0c_A 226 RSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEK-----------------R----------- 277 (878)
T ss_dssp EEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGG-----------------H-----------
T ss_pred cccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchh-----------------H-----------
Confidence 11223455666666899999999999999999999999999875431100 0
Q ss_pred cCCceEEEEeccHHHHhhcccc--cccCcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHH
Q psy944 492 DGSGEIVVATTRLETLFADVAV--AVHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEV 569 (689)
Q Consensus 492 ~~~~~~~i~~~~~e~~~~~~~~--~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~ 569 (689)
.......+.+.....+ .+...+..|. |.|+.+.||++++.+||+.++||++++|||+||+|||||++||++
T Consensus 278 ------~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~ 350 (878)
T 2v0c_A 278 ------EEVLAYVEAAKRKTEIERQAEGREKTGV-FLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEF 350 (878)
T ss_dssp ------HHHHHHHHHHHTSCHHHHHCSSSCCCCE-EEEEEEECTTTCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHH
T ss_pred ------HHHHHHHHHHhhhhhhhhhhccceeeeE-ecCcEEECCCCCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHH
Confidence 0000001111100000 1112344566 899999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeccC---------------CcccccCCCCCCCCchhhhHHHHHHHhhccccccCceeeeE---Eeeeeec
Q psy944 570 AQRLNLPLITVFNE---------------EGVIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVDK---EIERLNK 631 (689)
Q Consensus 570 ~~~~~l~i~~~id~---------------~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~---~i~~l~~ 631 (689)
|++||||++++|++ +|++. +++.|+|+++++|+++|++.|+ ++|++.... .....++
T Consensus 351 ~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~-ns~~~~Gl~~~eA~~~Ii~~L~----~~g~~~~~v~~rlrDW~IS 425 (878)
T 2v0c_A 351 ARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMV-NSGPFDGTESEEGKRKVIAWLE----EKGLGKGRVTYRLRDWLIS 425 (878)
T ss_dssp HHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEEC-SSGGGTTCBHHHHHHHHHHHHH----HHTSEEEEEEESCCCEECE
T ss_pred HHHcCCCceeeeCCCCccccccccccccCCeeEe-cCCCCCCcCHHHHHHHHHHHHH----HCCCCCCceEEecccchhh
Confidence 99999999999975 34443 4688999999999999999999 999875432 1123457
Q ss_pred ccccccCcHH
Q psy944 632 KEEYLKQVIA 641 (689)
Q Consensus 632 ~QWFi~~~~~ 641 (689)
+|-|+...++
T Consensus 426 RQR~WG~PIP 435 (878)
T 2v0c_A 426 RQRYWGTPIP 435 (878)
T ss_dssp ESCSSSEECC
T ss_pred cccccCCccc
Confidence 7777665444
No 8
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=2.1e-35 Score=287.70 Aligned_cols=157 Identities=25% Similarity=0.368 Sum_probs=138.6
Q ss_pred CceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHH
Q psy944 426 SGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLE 505 (689)
Q Consensus 426 ~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e 505 (689)
+.++++|||||||||||+||||||+++|+.. .. .++.+++++.+.+
T Consensus 22 ~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~--------------------------------~~--~~~~~i~a~~~~~ 67 (186)
T 1wny_A 22 KASLLIWTTTPWTLPGNVAAAVHPEYTYAAF--------------------------------QV--GDEALILEEGLGR 67 (186)
T ss_dssp SEEEEEEESCGGGGGGCCEEEECTTSEEEEE--------------------------------EE--TTEEEEEEHHHHH
T ss_pred CcEEEEEECCcchhhcceEEEECCCCcEEEE--------------------------------Ee--CCcchHHHHHHHH
Confidence 4789999999999999999999999987531 11 3567889999999
Q ss_pred HHhhcccccccCcccccccccCceeecCcC---CCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeecc
Q psy944 506 TLFADVAVAVHPEDERYKHLVGKLLVHPFC---ERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFN 582 (689)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~---~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id 582 (689)
.+... ...+ ..+.+|.+|.|++|.||+. ++.+||+.++||++++|||+||+|||||++||++|++||||++++||
T Consensus 68 ~~~~~-~~~~-~~~~~G~~l~g~~~~~P~~~~~~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id 145 (186)
T 1wny_A 68 KLLGE-GTPV-LKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVD 145 (186)
T ss_dssp HHHCT-TSCE-EEEEEHHHHTTCBBCCSSCCCCSSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTCCCCCCBC
T ss_pred HHhhc-CcEE-EEEEEcccccCcEEECCccccCCCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCCceEeeeC
Confidence 88754 2221 2467889999999999997 88999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCchhhhHHHHHHHhhccccccCceeeeE
Q psy944 583 EEGVIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVDK 624 (689)
Q Consensus 583 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~ 624 (689)
++|+|+++ + |+|+.+++|+++|++.|+ ++|++.+.+
T Consensus 146 ~~G~~~~~-~-~~Gl~v~~A~~~Ii~~L~----~~g~l~~~~ 181 (186)
T 1wny_A 146 EEGKLLVE-P-FKGLYFREANRAILRDLR----GRGLLFKEE 181 (186)
T ss_dssp TTSBBCST-T-CTTCBHHHHHHHHHHHHH----HTTCEEEEE
T ss_pred CCccCccC-C-CCCcCHHHHHHHHHHHHH----HCCCeecce
Confidence 99999976 7 999999999999999999 999887654
No 9
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=100.00 E-value=2.6e-33 Score=261.98 Aligned_cols=131 Identities=49% Similarity=0.801 Sum_probs=119.2
Q ss_pred ccccCCCCceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEE
Q psy944 419 AYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIV 498 (689)
Q Consensus 419 ~~~~~~~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 498 (689)
.|++ +.+.++++|||||||||||+||||||+++
T Consensus 10 ~F~~-~~~~~l~i~TTrP~Tl~g~~aiav~P~~~---------------------------------------------- 42 (147)
T 1wka_A 10 RYEV-EGGGFIEIATVRPETVFADQAIAVHPEDE---------------------------------------------- 42 (147)
T ss_dssp EEEB-TTSCEEEEEESCGGGGGGCCEEEECTTCT----------------------------------------------
T ss_pred EEEC-CCCcEEEEEECCceecccceEEEECCCCc----------------------------------------------
Confidence 3455 44578999999999999999999999842
Q ss_pred EEeccHHHHhhcccccccCcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCce
Q psy944 499 VATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLI 578 (689)
Q Consensus 499 i~~~~~e~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~ 578 (689)
++++|.|++|.||++++.+||+.++||++++|||+||+|||||++||++|++||||++
T Consensus 43 ----------------------~~~~l~g~~~~~P~~~~~ipI~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~ 100 (147)
T 1wka_A 43 ----------------------RYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPV 100 (147)
T ss_dssp ----------------------TTGGGTTCEEECTTSSCEEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHTCCCC
T ss_pred ----------------------hHHHhcCCEEECCCCCCeeEEEEeCccccCCCCCcEEEccCCCHHHHHHHHHcCCCcc
Confidence 1247899999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCcccccCCCC----CCCCchhhhHHHHHHHhhccccccCceeeeE
Q psy944 579 TVFNEEGVIIGDYGE----FTGMKRFDARTRVTELISLSISSQGLIKVDK 624 (689)
Q Consensus 579 ~~id~~G~~~~~~~~----~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~ 624 (689)
++||++|+| ++++ |+|+++++|+++|++.|+ ++|++.+.+
T Consensus 101 ~~id~~G~~--~~~~~~~~~~Gl~~~~A~~~Ii~~L~----~~g~l~~~~ 144 (147)
T 1wka_A 101 SVINLEGRM--EGERVPEALRGLDRFEARRKAVELFR----EAGHLVKEE 144 (147)
T ss_dssp CSBCTTSBB--CSTTSCGGGTTSBHHHHHHHHHHHHH----HHTCEEEEE
T ss_pred eEECCCCEE--cCCCcccccCCcCHHHHHHHHHHHHH----HCCCeeeee
Confidence 999999999 5776 999999999999999999 999887654
No 10
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=99.98 E-value=1.3e-33 Score=280.69 Aligned_cols=163 Identities=27% Similarity=0.394 Sum_probs=128.3
Q ss_pred ceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHHH
Q psy944 427 GEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLET 506 (689)
Q Consensus 427 ~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e~ 506 (689)
.+++||||||||||||++|||+|+++|+......... | ..+.+++++.+++.
T Consensus 38 ~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~------------------------~----~~~~~~~~~~~i~~ 89 (219)
T 3o0a_A 38 IYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGER------------------------L----GNACYSDVENFVEK 89 (219)
T ss_dssp EEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHH------------------------T----TCCCHHHHHHHHHH
T ss_pred CEEEEEECCcchhhcccEEEECCCCcEEEEEecCCcc------------------------c----cchhHHHHHHHHHH
Confidence 6899999999999999999999999998754321000 0 00011233444555
Q ss_pred Hhhccccc--ccCcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeeccC-
Q psy944 507 LFADVAVA--VHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNE- 583 (689)
Q Consensus 507 ~~~~~~~~--~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~id~- 583 (689)
+....... .. .+.+|. |.|++|.||++++.+||+.++||++++|||+||+|||||++||++|++||||++++||+
T Consensus 90 ~~~~~~~~~~~~-~~~~G~-l~G~~~~~Pl~~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~Lpi~~vi~~~ 167 (219)
T 3o0a_A 90 MKKMSTRERTME-EDKEGV-FLGVYATNPANGEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPE 167 (219)
T ss_dssp HHTCCHHHHHSC-SSCCEE-EEEEEEECTTTCCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECS
T ss_pred HHhhccccceeE-EEeeeE-EcCCEEECCCCCCeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCCCceeeeCCc
Confidence 44332211 11 456776 99999999999999999999999999999999999999999999999999999999986
Q ss_pred ------Cccccc-----CCCCCCCCchhhhHHHHHHHhhccccccCceeee
Q psy944 584 ------EGVIIG-----DYGEFTGMKRFDARTRVTELISLSISSQGLIKVD 623 (689)
Q Consensus 584 ------~G~~~~-----~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~ 623 (689)
+|.|++ +.++|+|+++++|+++|++.|+ ++|++.+.
T Consensus 168 ~~~~~~~g~ft~~g~~~~~~~~~Gl~~~eA~~~Ii~~L~----~~g~l~~~ 214 (219)
T 3o0a_A 168 GAWDFEKGAYEGKGTLVNSDGFDGLDSETAKRKITEWLQ----DRGLGEKK 214 (219)
T ss_dssp SCCCTTTCCCCSCCEECSCGGGTTCBHHHHHHHHHHHHH----HTTSEEEC
T ss_pred cccccccccccccceEecCCCCCCCCHHHHHHHHHHHHH----HCCCeeee
Confidence 344443 3588999999999999999999 99988754
No 11
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.97 E-value=4.7e-33 Score=328.10 Aligned_cols=164 Identities=39% Similarity=0.747 Sum_probs=130.6
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAE 80 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (689)
+++++++++++++++|+|++.++++.+||++++||||||||+||+|||+|||..|+... +..++.+...
T Consensus 366 ~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~i~----v~~~~~l~~~------- 434 (862)
T 1gax_A 366 LAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVN----VPRPERYLED------- 434 (862)
T ss_dssp HHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCEE----CCCGGGTTCC-------
T ss_pred HHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCCEEE----Eecccccccc-------
Confidence 47889999988899999999999999999999999999999999999999997544221 1110000000
Q ss_pred HHhhhccccccCC-ccccccccccccccccCCcceeeecCCcc-----------cccc--------------------cc
Q psy944 81 QKAISKFNVTQAD-ISLRQDEDVLDTWFSSGLFPFSVFGWPDK-----------QRLS--------------------AN 128 (689)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~-----------~~l~--------------------~~ 128 (689)
...|+.++ ..++|++|||||||+|+++|+++++||.+ ..+. +.
T Consensus 435 -----~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~ 509 (862)
T 1gax_A 435 -----PTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGE 509 (862)
T ss_dssp -----CCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSS
T ss_pred -----chhhhhcCchheecCCcccceeeccCCcchhhccCCCchHHHHhhCCceEEecCccccccHHHHHHHHHHHhcCC
Confidence 00122233 36999999999999999999999887743 2222 22
Q ss_pred CcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 129 GIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 129 ~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
.+|++|++||+++|.+|+|||||+||+|+|.+++++||+|++||||++.++.
T Consensus 510 ~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~ 561 (862)
T 1gax_A 510 RPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATG 561 (862)
T ss_dssp CSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCT
T ss_pred CcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCC
Confidence 3579999999999999999999999999999999999999999999987553
No 12
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=99.97 E-value=3.4e-32 Score=267.25 Aligned_cols=161 Identities=25% Similarity=0.410 Sum_probs=126.3
Q ss_pred ccccCCCCceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEE
Q psy944 419 AYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIV 498 (689)
Q Consensus 419 ~~~~~~~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 498 (689)
.|++.+.+.+++||||||||||||++|||+|+++|+......
T Consensus 16 ~F~~~~~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~-------------------------------------- 57 (196)
T 2ajg_A 16 TFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAEN-------------------------------------- 57 (196)
T ss_dssp EEEBTTCSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTT--------------------------------------
T ss_pred EEEeCCCCcEEEEEECChhhhcCccEEEECCCCcEEEEEcCC--------------------------------------
Confidence 345555567999999999999999999999999998642110
Q ss_pred EEeccHHHHhhccc----cccc-CcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHc
Q psy944 499 VATTRLETLFADVA----VAVH-PEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRL 573 (689)
Q Consensus 499 i~~~~~e~~~~~~~----~~~~-~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~ 573 (689)
..+.+.+..... .... ....++.+|.|++|.||++++.+||++++||++++|||+||+|||||++||++|++|
T Consensus 58 --~~~~~~~~~~~~~~~~~~~~~~~~~k~g~l~G~~~~~P~~~~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~ 135 (196)
T 2ajg_A 58 --NPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKY 135 (196)
T ss_dssp --CHHHHHHHHHHHHCCCCGGGGGGSCCCEEEEEEEEECTTTCCEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHhhcccccceEEEeeeeCCEEcCCEEECCCCCCeeEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHc
Confidence 001111111100 0000 112344589999999999999999999999999999999999999999999999999
Q ss_pred CCCceeecc---------CCcccccC-----CCCCCCCchhhhHHHHHHHhhccccccCceeee
Q psy944 574 NLPLITVFN---------EEGVIIGD-----YGEFTGMKRFDARTRVTELISLSISSQGLIKVD 623 (689)
Q Consensus 574 ~l~i~~~id---------~~G~~~~~-----~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~ 623 (689)
|||++++|+ ++|+|+++ +++|+|+++++|+++|++.|+ ++|++.+.
T Consensus 136 ~L~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns~~~~Gl~v~eA~~~Ii~~L~----~~g~~~~~ 195 (196)
T 2ajg_A 136 GLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLT----AMGVGERK 195 (196)
T ss_dssp TCCCCCCBCCTTSSCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHH----HTTSEEEE
T ss_pred CCCceeEEeCCcCcccccccccccCCceEecCcccCCeEHHHHHHHHHHHHH----HCCCceee
Confidence 999999996 46666643 478999999999999999999 99988653
No 13
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.97 E-value=6.4e-32 Score=275.90 Aligned_cols=163 Identities=21% Similarity=0.302 Sum_probs=133.9
Q ss_pred CCCceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEecc
Q psy944 424 DGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTR 503 (689)
Q Consensus 424 ~~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~ 503 (689)
+.+.+++||||||||||||+||||+|+++|+.. .+ .++.++|++++
T Consensus 30 ~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~v--------------------------------~~--~~~~~~i~~~~ 75 (261)
T 2wfg_A 30 ENKVYLVAATLRPETMYGQTCCFVSPKIDYGVF--------------------------------DA--GNGDYFITTER 75 (261)
T ss_dssp TSEEEEEEEESCGGGGGGCCEEEECTTCEEEEE--------------------------------EC--STTEEEEECHH
T ss_pred CCCCEEEEEECCchHHhhhheEEECCCCceEEE--------------------------------Ee--cCceEEEhHHH
Confidence 345789999999999999999999999987531 11 23467888888
Q ss_pred HHHHhhccccc------ccCcccccccccCceeecCcC-CCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHH----
Q psy944 504 LETLFADVAVA------VHPEDERYKHLVGKLLVHPFC-ERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQR---- 572 (689)
Q Consensus 504 ~e~~~~~~~~~------~~~~~~~~~~l~g~~~~~P~~-~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~---- 572 (689)
.+.+....... ....+.+|.+|.|++|.||++ ++.+||++++||++++|||+||+|||||++||++|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~ 155 (261)
T 2wfg_A 76 AFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANK 155 (261)
T ss_dssp HHHHHTTTTCSSSTTCCCCSEEEEHHHHTTCEEECTTCSSCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhcccccEEEEEEecccccCCEEECCCCCCceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcc
Confidence 87776544321 112456788999999999998 5789999999999999999999999999999999999
Q ss_pred ---cC-------CCceeeccC--Cccc---------------------------------ccC--CCCCCCCchhhhHHH
Q psy944 573 ---LN-------LPLITVFNE--EGVI---------------------------------IGD--YGEFTGMKRFDARTR 605 (689)
Q Consensus 573 ---~~-------l~i~~~id~--~G~~---------------------------------~~~--~~~~~G~~v~~a~~~ 605 (689)
|| ||++++|+. +|.+ ... +++|+|+++++|++.
T Consensus 156 ~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~eA~~~ 235 (261)
T 2wfg_A 156 PEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPK 235 (261)
T ss_dssp TTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHHHH
T ss_pred hhhcCCccccccCCceeEEcCcccCccchhhhhccccccccchhhhhhhhhhhhhhcccccceEeccccCCeEHHHHHHH
Confidence 99 899999986 3332 211 688999999999999
Q ss_pred HHHHhhccccccCceeeeE
Q psy944 606 VTELISLSISSQGLIKVDK 624 (689)
Q Consensus 606 i~~~L~~~~~~~g~~~~~~ 624 (689)
|++.|+ ++|++....
T Consensus 236 Ii~~L~----~~G~~~~~~ 250 (261)
T 2wfg_A 236 VKQDLI----DEGLAFVYN 250 (261)
T ss_dssp HHHHHH----HTTSEEEEC
T ss_pred HHHHHH----HCCCeeeee
Confidence 999999 999887654
No 14
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.97 E-value=1.2e-32 Score=327.28 Aligned_cols=169 Identities=24% Similarity=0.410 Sum_probs=131.0
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcc----------ccccee
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNV----------TEYELW 70 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~----------~~~~~~ 70 (689)
++++++++++ +++|+|+++++++.+||++++||||||||+||+|||+|||.. +....+..+ ...+.|
T Consensus 419 lr~~~l~~i~--~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~-g~~~~~~~~~~~i~~~~~~~g~~~W 495 (917)
T 1ffy_A 419 VRQDILDAIE--NTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAEN-GEIIMTKETVNHVADLFAEHGSNIW 495 (917)
T ss_dssp HHHHHHHHHH--TSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTT-SCEECCHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHh--cCcccCHHHHHHHHHHHhcCccceeeccCCcCcccceeeCCC-CCEecCHHHHHHHHHHhhhcCCccc
Confidence 4789999999 789999999999999999999999999999999999999864 221111110 011234
Q ss_pred ecCCChHHHHHHhhhccccccCC-ccccccccccccccccCCcceeee------cCCcccccccc---------------
Q psy944 71 VSGRSKEEAEQKAISKFNVTQAD-ISLRQDEDVLDTWFSSGLFPFSVF------GWPDKQRLSAN--------------- 128 (689)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dv~D~Wf~S~~~~~~~~------~wp~~~~l~~~--------------- 128 (689)
++.. ..+.. ...+.|+.|+ ..+++++||||+||+|+++|++++ .||++..+.|.
T Consensus 496 ~~~~-~~~~~---~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~s~ 571 (917)
T 1ffy_A 496 FERE-AKDLL---PEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSV 571 (917)
T ss_dssp HHSC-HHHHS---STTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHH
T ss_pred ccCC-HHHhc---ccccccccCCcccccccCCCcCeecCCCCCHHHHcCCchhcCCCceEEEEEecccccHHHHHHHHHH
Confidence 3321 11111 1123444444 469999999999999999888764 47888654443
Q ss_pred -----CcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhh
Q psy944 129 -----GIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 129 -----~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
.+|++|++|||+++.+|+|||||+||+|+|.+++++||+|++|||+++
T Consensus 572 ~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls 624 (917)
T 1ffy_A 572 ATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSS 624 (917)
T ss_dssp HHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHT
T ss_pred HhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhc
Confidence 357999999999988999999999999999999999999999999997
No 15
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.97 E-value=9.7e-32 Score=272.87 Aligned_cols=163 Identities=18% Similarity=0.243 Sum_probs=130.9
Q ss_pred ccCCCCceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEE
Q psy944 421 KLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVA 500 (689)
Q Consensus 421 ~~~~~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~ 500 (689)
.+.+.+.++++|||||||||||+||||||+.+|+. +++. +++.++++
T Consensus 74 ~l~g~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~--------------------------------v~~~-~ge~~IvA 120 (311)
T 3pz6_A 74 QVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGA--------------------------------YYIN-KDEVIIVS 120 (311)
T ss_dssp TCCSCEEEEEEEESCGGGGGGCCEEEECTTCEEEE--------------------------------EEEE-TTEEEEEE
T ss_pred ecCCCCEEEEEEECCchhhhhheEEEECCCCcEEE--------------------------------EEEC-CCCEEEEe
Confidence 34556789999999999999999999999988753 1222 45778999
Q ss_pred eccHHHHhhcccc-------cccCcccccccccCceeecCcCCC-ceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHH
Q psy944 501 TTRLETLFADVAV-------AVHPEDERYKHLVGKLLVHPFCER-KIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQR 572 (689)
Q Consensus 501 ~~~~e~~~~~~~~-------~~~~~~~~~~~l~g~~~~~P~~~~-~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~ 572 (689)
+.+.+.+...... .....+.+|++|.|++|.||++++ .+||++++||++++|||+||+|||||++||.+|++
T Consensus 121 e~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G~~~~hPl~~~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d 200 (311)
T 3pz6_A 121 EHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATVRAPLSPYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKD 200 (311)
T ss_dssp HHHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHTTCEEECTTCSSSCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCCcEEEEEEEhHHhcCCEEECCCCCCCeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHH
Confidence 9988886322110 011235789999999999999996 99999999999999999999999999999997766
Q ss_pred -----------cCC---------CceeeccC---------------------------------------CcccccCCCC
Q psy944 573 -----------LNL---------PLITVFNE---------------------------------------EGVIIGDYGE 593 (689)
Q Consensus 573 -----------~~l---------~i~~~id~---------------------------------------~G~~~~~~~~ 593 (689)
||| +++.+|+. +|+|+ .|+
T Consensus 201 ~Lk~k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~--~g~ 278 (311)
T 3pz6_A 201 ILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK--MGP 278 (311)
T ss_dssp HHTTGGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC--SST
T ss_pred HhhccHHHHHHcCCchHHhccCCCeEEEEecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe--eec
Confidence 664 56655531 46666 689
Q ss_pred CCCCchhhhHHHHHHHhhccccccCceee
Q psy944 594 FTGMKRFDARTRVTELISLSISSQGLIKV 622 (689)
Q Consensus 594 ~~G~~v~~a~~~i~~~L~~~~~~~g~~~~ 622 (689)
|+|++|.+|+++|++.|+ ++|..+.
T Consensus 279 ~~G~~V~eAk~~i~~~L~----~~g~a~~ 303 (311)
T 3pz6_A 279 FAGQSVKDCKQSCRDLLV----QNNQCIV 303 (311)
T ss_dssp TTTSBHHHHHHHHHHHHH----HTTCEEE
T ss_pred cCCeEHHHHHHHHHHHHH----HCCCceE
Confidence 999999999999999999 8887653
No 16
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.97 E-value=7.6e-31 Score=267.09 Aligned_cols=159 Identities=18% Similarity=0.264 Sum_probs=126.0
Q ss_pred CCCceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEecc
Q psy944 424 DGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTR 503 (689)
Q Consensus 424 ~~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~ 503 (689)
+.+.+++||||||||||||+||||||+++|+.. .+. +++.+++++.+
T Consensus 27 ~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~--------------------------------~~~-~~~~~i~a~~~ 73 (252)
T 2wfd_A 27 GKNIFLVAATLRPETMFGQTNCWVRPDMKYIGF--------------------------------ETV-NGDIFICTQKA 73 (252)
T ss_dssp TSCEEEEEEESCGGGGGGCCEEEECSSSCCEEE--------------------------------ECT-TSCEEEECHHH
T ss_pred CCCCEEEEEECChHHHhhhheEEECCCCcEEEE--------------------------------Eec-CCcEEEEhhhh
Confidence 456899999999999999999999999987631 111 23556776666
Q ss_pred HHHHhhcccc------cccCcccccccccCceeecCcCC-CceeeeeCCcccccCCCcceEeCCCCCHHHHH--------
Q psy944 504 LETLFADVAV------AVHPEDERYKHLVGKLLVHPFCE-RKIPILADSFVEKDFGTGAVKISPGHDHNDYE-------- 568 (689)
Q Consensus 504 ~e~~~~~~~~------~~~~~~~~~~~l~g~~~~~P~~~-~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~-------- 568 (689)
.+.+.. ... .....+.+|.+|+|++|.||+++ +.+||++++||++++|||+||+|||||++||+
T Consensus 74 ~~~~~~-~~~~~~~~~~~~~~~~~G~~l~G~~~~~Pl~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~ 152 (252)
T 2wfd_A 74 ARNMSY-QGFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKK 152 (252)
T ss_dssp HHHHHT-TTSSSSTTCCCEEEECCHHHHTTCEEECSSCSSSCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHC
T ss_pred HHHHHH-HHhhccCcccEEEEEEEcccccCCEEEcCCCCCceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccc
Confidence 554321 110 00123567888999999999999 58999999999999999999999999999999
Q ss_pred --HHHHcCCC--------ceeeccC---------------------------------------CcccccCCCCCCCCch
Q psy944 569 --VAQRLNLP--------LITVFNE---------------------------------------EGVIIGDYGEFTGMKR 599 (689)
Q Consensus 569 --~~~~~~l~--------i~~~id~---------------------------------------~G~~~~~~~~~~G~~v 599 (689)
++++|||| ++.+|+. +|+|+ +++|+|+++
T Consensus 153 ~~fa~kygL~~~~~~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~--~~~~~Gl~v 230 (252)
T 2wfd_A 153 QALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML--VDGFKGQKV 230 (252)
T ss_dssp SHHHHTTTCCGGGTTTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC--STTSTTCBH
T ss_pred hhHHHHcCCCchhccccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCceEe--eeccCCeEH
Confidence 47889988 4555532 47777 789999999
Q ss_pred hhhHHHHHHHhhccccccCceee
Q psy944 600 FDARTRVTELISLSISSQGLIKV 622 (689)
Q Consensus 600 ~~a~~~i~~~L~~~~~~~g~~~~ 622 (689)
++|+++|++.|+ ++|++..
T Consensus 231 ~eA~~~Ii~~L~----~~g~~~~ 249 (252)
T 2wfd_A 231 QDVKKTIQKKMI----DAGDALI 249 (252)
T ss_dssp HHHHHHHHHHHH----HTTSEEE
T ss_pred HHHHHHHHHHHH----HCCCCcc
Confidence 999999999999 9998753
No 17
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.97 E-value=6.9e-32 Score=319.68 Aligned_cols=177 Identities=22% Similarity=0.455 Sum_probs=130.6
Q ss_pred CHHHHHHHHhcCCceEEccccH-HHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccce-eecCCC-hH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHT-KTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYEL-WVSGRS-KE 77 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~-~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~-~~~~~~-~~ 77 (689)
++++++++++ +++|+|++.+ +++.+||++++||||||||+||+|||+|||..++....++++++... ..+... ..
T Consensus 411 ~~~~~~~~~~--~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~ 488 (821)
T 1ile_A 411 FKDELIRNNQ--EIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPF 488 (821)
T ss_dssp GHHHHHHHHH--HSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSC
T ss_pred HHHHHHHHhc--CeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchh
Confidence 4789999998 6899999984 69999999999999999999999999999986653322222211100 000000 00
Q ss_pred HHHHHhhhc--cccccCCccccccccccccccccCCcceeeecCC------------ccccccc----------------
Q psy944 78 EAEQKAISK--FNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWP------------DKQRLSA---------------- 127 (689)
Q Consensus 78 ~~~~~~~~~--~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp------------~~~~l~~---------------- 127 (689)
.......++ ..|+ |+..++|++|||||||||+++|+.+++|| ++..+.|
T Consensus 489 ~l~~~~~d~~~~~~~-~g~~~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~ 567 (821)
T 1ile_A 489 DPHRPYVDQVELACA-CGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGV 567 (821)
T ss_dssp CCSHHHHTTCEEECT-TSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHH
T ss_pred hhccccccccccCCC-CCCchhhcccccceecccccchHhhcCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHH
Confidence 000011111 2344 56689999999999999999887776554 4433322
Q ss_pred ----cCcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 128 ----NGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 128 ----~~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
..+|++|++||++++.+|+|||||+||+|+|.+++++||+|++||||++.++.
T Consensus 568 ~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~ 624 (821)
T 1ile_A 568 MLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPP 624 (821)
T ss_dssp HHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCS
T ss_pred HhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCC
Confidence 23689999999999889999999999999999999999999999999987643
No 18
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.96 E-value=1.9e-30 Score=295.16 Aligned_cols=142 Identities=20% Similarity=0.321 Sum_probs=130.6
Q ss_pred CCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHH
Q psy944 232 NPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREK 311 (689)
Q Consensus 232 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~ 311 (689)
...++|+||.|||||||.|||||+++++++|+++||+||+||+|+|++||||||+||+.++++ .|.+
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k-----~g~~-------- 72 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ-----KQVS-------- 72 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHH-----TTSC--------
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHH-----cCCC--------
Confidence 456789999999999999999999999999999999999999999999999999999988865 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCcee
Q psy944 312 FIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVD 391 (689)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~ 391 (689)
+++|++++.+.+++++++||+++|| ++.|+++.|.+.++++|.+|+++|+||++.++|+|||+|+|+|++.+|+
T Consensus 73 ----~~e~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~ 146 (542)
T 3u1f_A 73 ----PYDFTTAVAGEFKKCFEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNIT 146 (542)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE
T ss_pred ----HHHHHHHHHHHHHHHHHHhCCccCc--CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhh
Confidence 2467888999999999999999997 6789999999999999999999999999999999999999999999986
Q ss_pred e
Q psy944 392 K 392 (689)
Q Consensus 392 ~ 392 (689)
.
T Consensus 147 ~ 147 (542)
T 3u1f_A 147 D 147 (542)
T ss_dssp E
T ss_pred c
Confidence 4
No 19
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.95 E-value=6.4e-29 Score=291.96 Aligned_cols=147 Identities=22% Similarity=0.352 Sum_probs=104.4
Q ss_pred cCCCeecccCCccccccceEEEeCCCCCCCCCc-----ccccceeecCCChHHHHHHhhhccccccCCcccccccccccc
Q psy944 31 NNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKN-----VTEYELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDT 105 (689)
Q Consensus 31 ~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~ 105 (689)
+++|||||||||||+|||+|||..|+....|+. ++. +....+.+ .++.....+..+.+.+..++|++|||||
T Consensus 436 rlrDW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~-~~~~~~~g--~pl~~~~~w~~~~cpg~~~~retDtmDt 512 (880)
T 4arc_A 436 RLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPE-DVVMDGIT--SPIKADPEWAKTTVNGMPALRETDTFDT 512 (880)
T ss_dssp SCCCEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCS-SCCCCSSS--CHHHHSTTTTEEESSSSEEEECCCEECT
T ss_pred EcccceeeeeeccCCcceEEEECCCCeEeCChHHCccccch-hcccCCCC--CchHhCccceeeccCCCcceeCCCcCCC
Confidence 379999999999999999999998774322221 111 11112222 1222223333222226679999999999
Q ss_pred ccccCCcceeeecCCc-----------------cccc--------------------------cccCcCceEEEcceee-
Q psy944 106 WFSSGLFPFSVFGWPD-----------------KQRL--------------------------SANGIHSEVFLHPIVR- 141 (689)
Q Consensus 106 Wf~S~~~~~~~~~wp~-----------------~~~l--------------------------~~~~~~k~v~~hg~~~- 141 (689)
|||||| +|..++||. +... .+..+|++|++|||++
T Consensus 513 w~dSsw-y~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~ 591 (880)
T 4arc_A 513 FMESSW-YYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLA 591 (880)
T ss_dssp TTGGGT-HHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEEE
T ss_pred cccCcH-HHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHeEEeceEee
Confidence 999985 455565554 2211 1223579999999996
Q ss_pred ------CCCCc------------------------------------eeeeccCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 142 ------DAHGR------------------------------------KMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 142 ------~~~g~------------------------------------KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
|.+|+ |||||+||+|+|.+++++||+|++|||+++.++
T Consensus 592 ~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~ 671 (880)
T 4arc_A 592 DAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASP 671 (880)
T ss_dssp EEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSC
T ss_pred cceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhcCC
Confidence 78888 999999999999999999999999999998866
Q ss_pred hh
Q psy944 180 LE 181 (689)
Q Consensus 180 ~~ 181 (689)
+.
T Consensus 672 ~~ 673 (880)
T 4arc_A 672 AD 673 (880)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 20
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.95 E-value=4e-28 Score=282.72 Aligned_cols=138 Identities=20% Similarity=0.214 Sum_probs=128.7
Q ss_pred CceeecCCCCCCCccchhHHHHH-HHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHH
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALT-NAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFI 313 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~-~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~ 313 (689)
++|+|+.|||||||.|||||+++ ++++|+++||+||+||+|+|++|||+||+||+.++++. |.+
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~-----G~~---------- 66 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE-----GRS---------- 66 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH-----TCC----------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHc-----CCC----------
Confidence 57999999999999999999999 99999999999999999999999999999999988753 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCcee
Q psy944 314 EKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVD 391 (689)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~ 391 (689)
+++|++++.+.++++|++||+++|| +++|+++.|.+.++++|.+|+++|+||++.++|+|||.|+|+|+|.+|+
T Consensus 67 --p~e~~~~~~~~~~~~~~~lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~ 140 (722)
T 1rqg_A 67 --PREIVDEFHEQIKITFQRAKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVI 140 (722)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCC
T ss_pred --HHHHHHHHHHHHHHHHHHhCCCCCC--CeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcc
Confidence 4578999999999999999998885 7899999999999999999999999999999999999999999998875
No 21
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.95 E-value=4.9e-29 Score=295.18 Aligned_cols=159 Identities=25% Similarity=0.326 Sum_probs=111.6
Q ss_pred cHHHHHHHHc-----------cCCCeecccCCccccccceEEEeCCCCCCCCC-----ccccccee--ec--CCChHHHH
Q psy944 21 HTKTWYQWLE-----------NNRDWCISRQLWWGHRIPAYYVSFNDPAKKPK-----NVTEYELW--VS--GRSKEEAE 80 (689)
Q Consensus 21 ~~~~~~~~l~-----------~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~-----~~~~~~~~--~~--~~~~~~~~ 80 (689)
+++.+.++|+ +++||||||||+||+|||+|||..|+....|+ .+.....+ +. +.++....
T Consensus 397 A~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~ 476 (878)
T 2v0c_A 397 GKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAH 476 (878)
T ss_dssp HHHHHHHHHHHHTSEEEEEEESCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGC
T ss_pred HHHHHHHHHHHCCCCCCceEEecccchhhcccccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChhhhh
Confidence 4556666665 58999999999999999999998765432221 11111111 11 11111111
Q ss_pred HHhhhccccccCCccccccccccccccccCCcceeeec-----------------CCccccccc----------------
Q psy944 81 QKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFG-----------------WPDKQRLSA---------------- 127 (689)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~-----------------wp~~~~l~~---------------- 127 (689)
..+ -...|+.|+..++|++|||||||||+|++ ..+. ||++..+.|
T Consensus 477 ~~~-~~~~cp~cg~~~~retDtmDtwfdSsw~~-~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~ 554 (878)
T 2v0c_A 477 PEF-YETTCPKCGGPAKRDTDTMDTFFDSSWYY-LRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTK 554 (878)
T ss_dssp HHH-HEEECTTTCSEEEECCCEECHHHHHTSHH-HHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHH
T ss_pred Hhh-cCCcCCCCCCcceeccccccccccccchh-hhccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHH
Confidence 111 12456777788999999999999998653 3433 455543222
Q ss_pred ----------cCcCceEEEcceeeCC----------------------------------------------CC------
Q psy944 128 ----------NGIHSEVFLHPIVRDA----------------------------------------------HG------ 145 (689)
Q Consensus 128 ----------~~~~k~v~~hg~~~~~----------------------------------------------~g------ 145 (689)
..||++|++|||++|. +|
T Consensus 555 ~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 634 (878)
T 2v0c_A 555 FLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWK 634 (878)
T ss_dssp HHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEE
T ss_pred HHHHhhcccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeeccCCCCchhhh
Confidence 2368999999999983 89
Q ss_pred -ceeeeccCCccCchhhhhcCChhhHHHHHhhcCchh
Q psy944 146 -RKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 146 -~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
+|||||+||+|+|.+++++||+|++|||+++.++..
T Consensus 635 ~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~ 671 (878)
T 2v0c_A 635 PAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPE 671 (878)
T ss_dssp EEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTT
T ss_pred HHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCC
Confidence 999999999999999999999999999999866543
No 22
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.92 E-value=1.6e-25 Score=253.51 Aligned_cols=142 Identities=21% Similarity=0.258 Sum_probs=128.7
Q ss_pred CCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHH
Q psy944 232 NPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREK 311 (689)
Q Consensus 232 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~ 311 (689)
.+++.|++++|||||||.+||||+++++++|+++||+||+||+|++++|||+||+||+.++++. |..+
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-----g~~~------- 76 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKE-----GIPA------- 76 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH-----TSCH-------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHc-----CCCH-------
Confidence 4677899999999999999999999999999999999999999999999999999999887652 3332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCcee
Q psy944 312 FIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVD 391 (689)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~ 391 (689)
.++++.+.+.+++++++||+++| +++.|+++.|.+.++++|.+|+++|+||++..+|+||+.|+|++++.|++
T Consensus 77 -----~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~ 149 (524)
T 2x1l_A 77 -----AELARRNSDVFQRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETT 149 (524)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE
T ss_pred -----HHHHHHHHHHHHHHHHHcCCcCC--CCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhc
Confidence 35677888999999999999877 78889999999999999999999999999999999999999999999985
Q ss_pred e
Q psy944 392 K 392 (689)
Q Consensus 392 ~ 392 (689)
.
T Consensus 150 ~ 150 (524)
T 2x1l_A 150 E 150 (524)
T ss_dssp E
T ss_pred c
Confidence 4
No 23
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.92 E-value=7.7e-26 Score=254.44 Aligned_cols=139 Identities=24% Similarity=0.306 Sum_probs=110.2
Q ss_pred CCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHH
Q psy944 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFI 313 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~ 313 (689)
+++|+|+.|+|||||.+||||+++++++|+++||+||+|++|++++|||+||+||+.++++ .|..+
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-----~g~~~--------- 69 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE-----LGISP--------- 69 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHH-----SSSCH---------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHH-----cCCCH---------
Confidence 4689999999999999999999999999999999999999999999999999999988764 23332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCcee
Q psy944 314 EKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVD 391 (689)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~ 391 (689)
.++++++.+.+++++++||+++| .++.|+++.|.+.++++|.+|+++|+||++.++++||+.|+|++++.|+.
T Consensus 70 ---~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~ 142 (497)
T 2csx_A 70 ---KELVDRNAERFKKLWEFLKIEYT--KFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELA 142 (497)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC------------------
T ss_pred ---HHHHHHHHHHHHHHHHHhCCcCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhc
Confidence 25678889999999999999766 67889999999999999999999999999999999999999999999884
No 24
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.92 E-value=2.7e-25 Score=253.29 Aligned_cols=144 Identities=18% Similarity=0.156 Sum_probs=128.7
Q ss_pred cCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCH
Q psy944 230 EKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGR 309 (689)
Q Consensus 230 ~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~ 309 (689)
.+.++++|+|+.|||||||++||||+++++++|+++||+||+||+|++++|+|+||+||+..+++. |..+
T Consensus 13 ~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-----g~~~----- 82 (560)
T 3h99_A 13 MTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL-----GITP----- 82 (560)
T ss_dssp ----CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH-----TSCH-----
T ss_pred CCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHh-----CCCH-----
Confidence 456788999999999999999999999999999999999999999999999999999999888652 3322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCc
Q psy944 310 EKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIE 389 (689)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~e 389 (689)
.++++.+.+.++++|++||+++| +++.|+++.|.+.++++|.+|+++|+||++...++||+.|+++|++.+
T Consensus 83 -------~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~ 153 (560)
T 3h99_A 83 -------EQMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRF 153 (560)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGG
T ss_pred -------HHHHHHHHHHHHHHHHHcCCCCC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchh
Confidence 35677788999999999999766 789999999999999999999999999999999999999999999999
Q ss_pred eee
Q psy944 390 VDK 392 (689)
Q Consensus 390 v~~ 392 (689)
|+.
T Consensus 154 v~g 156 (560)
T 3h99_A 154 VKG 156 (560)
T ss_dssp EEE
T ss_pred cCC
Confidence 863
No 25
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.92 E-value=3.9e-25 Score=248.99 Aligned_cols=138 Identities=25% Similarity=0.349 Sum_probs=126.4
Q ss_pred CCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHH
Q psy944 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFI 313 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~ 313 (689)
+++|+|+.|+|||||.+||||+++++++|+++||+||+||+|++++|||+||++|+.++++. |..+
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-----g~~~--------- 67 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA-----GEDP--------- 67 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHH-----TSCH---------
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHc-----CCCH---------
Confidence 35799999999999999999999999999999999999999999999999999999887642 3332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCce
Q psy944 314 EKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEV 390 (689)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev 390 (689)
.++++.+.+.+++++++||+++| .++.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|++++.++
T Consensus 68 ---~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l 139 (500)
T 2d5b_A 68 ---KAFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKEL 139 (500)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTS
T ss_pred ---HHHHHHHHHHHHHHHHHhCCcCC--CCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhc
Confidence 35688889999999999999877 6788999999999999999999999999999999999999999999986
No 26
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.90 E-value=4.4e-24 Score=242.88 Aligned_cols=142 Identities=20% Similarity=0.299 Sum_probs=129.7
Q ss_pred CCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHH
Q psy944 232 NPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREK 311 (689)
Q Consensus 232 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~ 311 (689)
.++++|+|+.|+|||||++||||+++++++|+++||+||+||+|++++|+|+||.+|+.++++ .|..+
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~-----~g~~p------- 90 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAK-----QGVSP------- 90 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHH-----TTCCH-------
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHH-----cCCCH-------
Confidence 456789999999999999999999999999999999999999999999999999999888754 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCcee
Q psy944 312 FIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVD 391 (689)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~ 391 (689)
.++++.+.+.+++++++|||++| .+++|+++.|.+.++++|.+|+++|+||++...++||+.|++++++.|+.
T Consensus 91 -----~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~ 163 (564)
T 3kfl_A 91 -----MDFTTSVSSEFKQCFQEMNYDMN--YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVA 163 (564)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEE
T ss_pred -----HHHHHHHHHHHHHHHHHcCCCCC--ccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhc
Confidence 35788889999999999999999 57899999999999999999999999999999999999999999999985
Q ss_pred e
Q psy944 392 K 392 (689)
Q Consensus 392 ~ 392 (689)
.
T Consensus 164 ~ 164 (564)
T 3kfl_A 164 D 164 (564)
T ss_dssp E
T ss_pred c
Confidence 3
No 27
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.89 E-value=1.8e-23 Score=237.05 Aligned_cols=141 Identities=20% Similarity=0.287 Sum_probs=128.4
Q ss_pred CCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHH
Q psy944 233 PKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKF 312 (689)
Q Consensus 233 ~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~ 312 (689)
++++|+|+.|+|||||++||||+++++++|+++||+|++||+|.+++|+|+||.+|+.++++ .|..+
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~-----~g~~~-------- 89 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARK-----EGITP-------- 89 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHH-----HTSCH--------
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHH-----cCCCH--------
Confidence 35689999999999999999999999999999999999999999999999999999887754 23332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCceee
Q psy944 313 IEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDK 392 (689)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~ 392 (689)
.++++.+.+.+++++++||+.+| .++.|+++.|.+.++++|.+|.++|+||++..+++||+.|++++++.|++.
T Consensus 90 ----~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~ 163 (536)
T 4dlp_A 90 ----RDLADRNTSAFRRMAEVLNSSND--DYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEV 163 (536)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEE
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCCC--cceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhc
Confidence 35678889999999999999988 778999999999999999999999999999999999999999999999864
No 28
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.89 E-value=3.4e-25 Score=251.91 Aligned_cols=158 Identities=22% Similarity=0.336 Sum_probs=117.0
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHcc-CCCeecccCCc----cccccce-----EEEeCCCCCCCCCccccccee
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLEN-NRDWCISRQLW----WGHRIPA-----YYVSFNDPAKKPKNVTEYELW 70 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~-l~DW~ISRqr~----WG~pIP~-----~y~~~~~~~~~~~~~~~~~~~ 70 (689)
+++++++++++++..|.|++.++.+.+|+++ ++||||||||+ ||+|||. +|+|++++.+ .+.
T Consensus 181 ~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~vw~da~~~---~~~----- 252 (542)
T 3u1f_A 181 FRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWLDALTN---YLT----- 252 (542)
T ss_dssp GHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTH---HHH-----
T ss_pred HHHHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeeeeeccchh---hhh-----
Confidence 4688999999999999999999999999998 99999999997 9999994 3334322110 000
Q ss_pred ecCCChHHHHHHhhhccccccCCcccc--cc-----ccccc-cccccCCcceeeecCCccccccccCcCceEEEcceeeC
Q psy944 71 VSGRSKEEAEQKAISKFNVTQADISLR--QD-----EDVLD-TWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRD 142 (689)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~dv~D-~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~ 142 (689)
...+..+..+.... .+ ..-.| +..|+++.+||++.||+.+...+..+|+.|++||++.
T Consensus 253 -------------~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hg~l~- 318 (542)
T 3u1f_A 253 -------------GSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLPLPKKIVAHGWWT- 318 (542)
T ss_dssp -------------HHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCCE-
T ss_pred -------------hhhccccccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhhcccccceecccccee-
Confidence 01111111110000 00 00001 2367888899999999987667778899999999986
Q ss_pred CCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 143 AHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 143 ~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
.+|+|||||+||+|+|.+++++||+|+|||||++.++.
T Consensus 319 ~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~ 356 (542)
T 3u1f_A 319 KDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGF 356 (542)
T ss_dssp ETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCT
T ss_pred cCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcc
Confidence 78999999999999999999999999999999986653
No 29
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.88 E-value=3.7e-24 Score=249.37 Aligned_cols=168 Identities=14% Similarity=0.143 Sum_probs=114.6
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHH-ccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWL-ENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEA 79 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l-~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (689)
+++++++++++++ .|++.++++.+|| ++++|||||||++||+|||++++... . ....+|+++......
T Consensus 195 ~~~~l~~~~~~~~---wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~g~~------~--~~iyvW~da~i~y~~ 263 (722)
T 1rqg_A 195 FAERLKRWIEKQP---WKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMK------G--KVLYVWFEAPIGYIS 263 (722)
T ss_dssp THHHHHHHHHSSC---CCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSST------T--CEECHHHHGGGHHHH
T ss_pred HHHHHHHHHHhCC---CCHHHHHHHHHHHHCCCcccceeccccCccccCccccCCC------C--CEEEEEeccccchhh
Confidence 5789999999653 5999999999999 67999999999999999996431111 1 112345443221111
Q ss_pred -HHHhhhccccccCCccccc--ccccc-ccccccCCcceeeecCCccccccc----------cCcCceEEEcceeeCCCC
Q psy944 80 -EQKAISKFNVTQADISLRQ--DEDVL-DTWFSSGLFPFSVFGWPDKQRLSA----------NGIHSEVFLHPIVRDAHG 145 (689)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~--~~dv~-D~Wf~S~~~~~~~~~wp~~~~l~~----------~~~~k~v~~hg~~~~~~g 145 (689)
..++....+.+..=..+.. ++++. -+..++++.+||.+.||++++..+ ..+|++|++|||+++ +|
T Consensus 264 ~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~~~Pk~v~~hG~v~~-~G 342 (722)
T 1rqg_A 264 ITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTL-EG 342 (722)
T ss_dssp HHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEE-TT
T ss_pred hHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCcccccccCCCCCCEEEEeeeEEe-CC
Confidence 0011111000000000111 22221 134567788888888999865543 356899999999996 99
Q ss_pred ceeeeccCCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 146 RKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 146 ~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
+|||||+||+|+|.+++++||+|++||||++.++.
T Consensus 343 ~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~ 377 (722)
T 1rqg_A 343 KKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPE 377 (722)
T ss_dssp EECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCS
T ss_pred eeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCC
Confidence 99999999999999999999999999999987553
No 30
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.88 E-value=2.4e-24 Score=245.05 Aligned_cols=164 Identities=21% Similarity=0.273 Sum_probs=119.1
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHc-cCCCeeccc----CCccccccc-----eEEEeCCCCCCCCCccccccee
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLE-NNRDWCISR----QLWWGHRIP-----AYYVSFNDPAKKPKNVTEYELW 70 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~ISR----qr~WG~pIP-----~~y~~~~~~~~~~~~~~~~~~~ 70 (689)
++++++++++++...|.|++.++++.+||+ +++|||||| |++||+||| ++|||+|+... +++....|
T Consensus 198 ~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yVWfDa~~~---y~s~~~~~ 274 (564)
T 3kfl_A 198 FRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFN---YYTGALTR 274 (564)
T ss_dssp GHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTH---HHHHHHEE
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCCEEEEeccCcHH---HHHHhCcc
Confidence 468899999988888999999999999999 599999999 799999999 35555543211 00000000
Q ss_pred ecCCChHHHHHHhhhccccccCCccccccccccccccccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeee
Q psy944 71 VSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSK 150 (689)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSK 150 (689)
....... .....+. ....+ ..| -...|+++.+||++.||+.++..+..+|++|++||++ +.+|+||||
T Consensus 275 ~~~~~~~----~~~~~~~---~~~~w--p~d--v~~~GkDii~FH~~~wpa~L~a~g~~~~~~v~~hg~v-~~~G~KMSK 342 (564)
T 3kfl_A 275 VATDGTE----TLDEDHH---ALNRW--PAD--VHVVGKDILKFHAIYWPAFLMSAELPLPERLVSHGWW-TKDHKKISK 342 (564)
T ss_dssp ECTTSCE----EECSSST---TTTCC--SCS--EEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCE-EETTEECCT
T ss_pred ccccccc----cchhcch---hhhcC--ccc--eEEEeecccchHHHHHHHHHHhCCCCCCcEEEEcccE-eeCCccccc
Confidence 0000000 0000000 00001 011 2457999999999999998777778889999999999 599999999
Q ss_pred ccCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 151 SLGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 151 S~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
|+||+|+|.+++++||+|++||||++.++
T Consensus 343 S~GNvV~p~d~i~~~G~DalR~~ll~~~~ 371 (564)
T 3kfl_A 343 SLGNAFDPVEKAKEFGIDALKYFLMRESN 371 (564)
T ss_dssp TTTCCCCHHHHHHHHCHHHHHHHHHHHCC
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 99999999999999999999999998554
No 31
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.88 E-value=7.6e-24 Score=254.20 Aligned_cols=163 Identities=17% Similarity=0.242 Sum_probs=107.4
Q ss_pred HHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccce---EEEeCCCCCCCCCcccccceeecCCChHH
Q psy944 2 AEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPA---YYVSFNDPAKKPKNVTEYELWVSGRSKEE 78 (689)
Q Consensus 2 ~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (689)
+++++++++ +++|+|++.++++.+|+++++||||||||+||+|||+ |.+. .+.+...++..+....
T Consensus 475 k~~~l~~~~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~---------~~~ds~iYv~~~~~~~ 543 (967)
T 1wz2_A 475 KEKARKALE--RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIE---------SLSDSTIYMAYYTISR 543 (967)
T ss_dssp HHHHHHHHT--TSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEEC---------HHHHTTSTHHHHHHHH
T ss_pred HHHHHHhhh--ccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCcccccc---------cCCCCceEeehhhhhh
Confidence 678999998 7899999999999999999999999999999999994 2221 0111111110000000
Q ss_pred HHHHhhhccccccCCcccccccccccccc--------------ccCCccee--------eecCCccccccccC-------
Q psy944 79 AEQKAISKFNVTQADISLRQDEDVLDTWF--------------SSGLFPFS--------VFGWPDKQRLSANG------- 129 (689)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf--------------~S~~~~~~--------~~~wp~~~~l~~~~------- 129 (689)
.........+.++ ..+ .++++|+|| +||+.+-. ..+||.+.++.|.+
T Consensus 544 ~~~~~~~~~g~~~--~~l--~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~ 619 (967)
T 1wz2_A 544 HINKLRQEGKLDP--EKL--TPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLT 619 (967)
T ss_dssp HHHHHHHTTCCCG--GGC--CHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHH
T ss_pred HHHHHHHhcCCCh--HHc--CcccceeeccCccccCccccchhhcCCCHHHHhhhHHHHHhhCCCeEEeeeeCcchhHHH
Confidence 0000000111111 112 235566555 44432110 12467775443322
Q ss_pred --------------cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 130 --------------IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 130 --------------~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
+|+.|++||++++ +|+|||||+||+|+|.+++++||+|++||||+.+++.
T Consensus 620 ~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~ 683 (967)
T 1wz2_A 620 FFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEH 683 (967)
T ss_dssp HHHHHHHHHSCSTTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHcCcccccceEEEeeEEee-CCEEccccccCCCCHHHHHHHhChHHHHHHHHhCCCC
Confidence 3599999999995 8999999999999999999999999999999876554
No 32
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.87 E-value=3.5e-23 Score=245.37 Aligned_cols=166 Identities=17% Similarity=0.166 Sum_probs=106.6
Q ss_pred HHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHHH
Q psy944 2 AEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAEQ 81 (689)
Q Consensus 2 ~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (689)
+++++++++ ++.|+|++.++++.+|+++++||||||||+||+|||....|.++... . +...+|... ......
T Consensus 475 ~~~~l~~~~--~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~--~--~~iYv~~~~--~~~~~~ 546 (810)
T 1wkb_A 475 KEKARKALE--RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLS--D--STIYMAYYT--ISRHIN 546 (810)
T ss_dssp HHHHHHHHH--TSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTTT--S--SSSHHHHHH--HHHHHH
T ss_pred HHHHHhhhc--ccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcceecccCC--C--Cceeeehhh--hHHHHH
Confidence 678999998 67999999999999999999999999999999999942112111100 0 011111110 000000
Q ss_pred HhhhccccccCCcccccccccccccc--------------ccCCcce--------eeecCCccccccccC----------
Q psy944 82 KAISKFNVTQADISLRQDEDVLDTWF--------------SSGLFPF--------SVFGWPDKQRLSANG---------- 129 (689)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~dv~D~Wf--------------~S~~~~~--------~~~~wp~~~~l~~~~---------- 129 (689)
......+.+. ..+ .++++|+|| +||+.+. ...+||.+....|.+
T Consensus 547 ~~~~~~~~~~--~~l--~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G~D~~~~H~~~~~ 622 (810)
T 1wkb_A 547 KLRQEGKLDP--EKL--TPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFI 622 (810)
T ss_dssp HHHHTTCCCG--GGC--CHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHH
T ss_pred HhHhhcCCCH--HHc--CccceeeeeccccccCccccchhhhCCCHHHHHhhHHHHHhhCCceEEeecccccccHHHHHH
Confidence 0000111111 111 234555555 4443221 012467665433322
Q ss_pred -----------cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 130 -----------IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 130 -----------~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
+|+.|++||++++ +|+|||||+||+|+|.+++++||+|++||||+.+++.
T Consensus 623 ~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~ 683 (810)
T 1wkb_A 623 FNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEH 683 (810)
T ss_dssp HHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCT
T ss_pred HHHHHHcCccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCCC
Confidence 3699999999994 8999999999999999999999999999999866554
No 33
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.86 E-value=5.3e-23 Score=233.14 Aligned_cols=153 Identities=23% Similarity=0.356 Sum_probs=103.2
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHc-cCCCeecccCC-ccccccc-----eEEEeCCCCCCCCCcccccceeecC
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLE-NNRDWCISRQL-WWGHRIP-----AYYVSFNDPAKKPKNVTEYELWVSG 73 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~ISRqr-~WG~pIP-----~~y~~~~~~~~~~~~~~~~~~~~~~ 73 (689)
+++++++++++++..|.|++.++++.+|++ +++|||||||| +||+||| ++|+|+++.
T Consensus 192 ~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~---------------- 255 (536)
T 4dlp_A 192 YQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDAL---------------- 255 (536)
T ss_dssp GHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHH----------------
T ss_pred HHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCc----------------
Confidence 468899999988788999999999999998 59999999995 6999999 233333221
Q ss_pred CChHHHHHHhhhccccccCCccccc--cccccccccccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeeec
Q psy944 74 RSKEEAEQKAISKFNVTQADISLRQ--DEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKS 151 (689)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSKS 151 (689)
.......+.+.....+.+ ..| -...|+++.+||++.||+.+...+..+|++|++||+++ .+|+|||||
T Consensus 256 -------~~y~s~~~~~~~~~~~~~~~p~d--v~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~hg~v~-~~G~KMSKS 325 (536)
T 4dlp_A 256 -------TNYITALGYPDTTDERWAYWPAN--AHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLF-NRGEKMSKS 325 (536)
T ss_dssp -------HHHHHTTTTTCTTSGGGGGCSCS--EEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEE-C--------
T ss_pred -------HHHHHhcCCCCCchHHHhhCCcc--eEEeechHHHHHHHHHHHHHHHCCCCCCcEEEeeeeEe-eCCceeccc
Confidence 111111110100001111 111 13478999999999999986666777899999999998 599999999
Q ss_pred cCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 152 LGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 152 ~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
+||+|+|.+++++||+|++||||++.++
T Consensus 326 ~GNvi~p~d~i~~~GaDalR~~ll~~~~ 353 (536)
T 4dlp_A 326 VGNVIDPFELVERYGLDQLRYFLMREVP 353 (536)
T ss_dssp ----CCHHHHHHHHCHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcCC
Confidence 9999999999999999999999998544
No 34
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.85 E-value=7.8e-23 Score=231.44 Aligned_cols=158 Identities=22% Similarity=0.391 Sum_probs=111.8
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHc-cCCCeecccCCc-cccccceEEEeCCCCCCCCCcccccceeecCCChHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLE-NNRDWCISRQLW-WGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEE 78 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~ISRqr~-WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (689)
++++++++++++...+.|+..++++.+|++ +++||||||||. ||+||| +... . ...+|++....
T Consensus 180 ~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP-~~~~---------~--~~yvWfds~~~-- 245 (524)
T 2x1l_A 180 YTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVP-DHPD---------H--VMYVWVDALTN-- 245 (524)
T ss_dssp SHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEET-TEEE---------E--EECHHHHHHTH--
T ss_pred HHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCC-CCCC---------C--EEEEecCCchH--
Confidence 468899999876667899999999999995 699999999985 999999 2100 0 01122211000
Q ss_pred HHHHhhhcccccc-CCccccc--cccccccccccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeeeccCCc
Q psy944 79 AEQKAISKFNVTQ-ADISLRQ--DEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSLGNV 155 (689)
Q Consensus 79 ~~~~~~~~~~~~~-~~~~~~~--~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSKS~gn~ 155 (689)
.....+.+. +...+.+ ..| -+..|+++.+||.+.||+.+...+..+|+++++||++++ +|+|||||+||+
T Consensus 246 ----~~~~~g~p~~~~~~~~~~~p~d--i~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~G~KMSKS~GN~ 318 (524)
T 2x1l_A 246 ----YLTGVGFPDTESESFRRYWPAD--LHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN-RGEKMSKSIGNV 318 (524)
T ss_dssp ----HHHTTTTTCTTSHHHHHHCSCS--EEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE-CSCSEETTTEES
T ss_pred ----HHHHcCCCCCchHHHHhhCCCe--EEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe-CCcccCCcCCCC
Confidence 000000000 0000000 011 133678888899988988766667778999999999995 899999999999
Q ss_pred cCchhhhhcCChhhHHHHHhhcCc
Q psy944 156 IDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 156 ~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
|+|.+++++||+|++|||+++.++
T Consensus 319 v~p~d~i~~~g~DalR~~ll~~~~ 342 (524)
T 2x1l_A 319 VDPVNLVDTFGLDQVRYFLLREVP 342 (524)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHHSC
T ss_pred CCHHHHHHHcChHHHHHHHHhcCC
Confidence 999999999999999999998544
No 35
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.84 E-value=4.5e-22 Score=224.06 Aligned_cols=155 Identities=20% Similarity=0.276 Sum_probs=114.0
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHcc-CCCeeccc--CC-ccccccc-----eEEEeCCCCCCCCCcccccceee
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLEN-NRDWCISR--QL-WWGHRIP-----AYYVSFNDPAKKPKNVTEYELWV 71 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~-l~DW~ISR--qr-~WG~pIP-----~~y~~~~~~~~~~~~~~~~~~~~ 71 (689)
+++++++++++++..+.|+..++++.+|+++ ++|||||| || .||+||| ++|+|++.... .++.
T Consensus 166 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~---y~~~----- 237 (500)
T 2d5b_A 166 YRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLN---YVSA----- 237 (500)
T ss_dssp GHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTH---HHHT-----
T ss_pred HHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchh---hHHH-----
Confidence 4678999999877778899999999999965 89999999 76 6999999 34444332110 0000
Q ss_pred cCCChHHHHHHhhhccccccCCccccccccccccccccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeeec
Q psy944 72 SGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKS 151 (689)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSKS 151 (689)
.+...+ .. ...+ + ..| -+-.|+++.+||...||+.+...+..+|+.+++||++++.+|+|||||
T Consensus 238 ~g~~~~---~~-~~~~--------~--p~d--i~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSKS 301 (500)
T 2d5b_A 238 LDYPEG---EA-YRTF--------W--PHA--WHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKT 301 (500)
T ss_dssp TTTTTC---HH-HHHH--------G--GGE--EEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTT
T ss_pred cCCCCC---ch-HHHc--------C--CCe--EEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCCCCccccc
Confidence 000000 00 0000 1 011 133678888888888988765567778999999999997799999999
Q ss_pred cCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 152 LGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 152 ~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
+||+|+|.+++++||+|++|||+++.++
T Consensus 302 ~GN~i~p~d~i~~~g~DalR~~ll~~~~ 329 (500)
T 2d5b_A 302 LGNVVDPFALLEKYGRDALRYYLLREIP 329 (500)
T ss_dssp TTCCCCHHHHHHHHCHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHhcCcHHHHHHHHhcCC
Confidence 9999999999999999999999998544
No 36
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.83 E-value=1.4e-22 Score=230.92 Aligned_cols=160 Identities=21% Similarity=0.372 Sum_probs=114.8
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHc-cCCCeecccCC-ccccccc-----eEEEeCCCCCCCCCcccccceeecC
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLE-NNRDWCISRQL-WWGHRIP-----AYYVSFNDPAKKPKNVTEYELWVSG 73 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~ISRqr-~WG~pIP-----~~y~~~~~~~~~~~~~~~~~~~~~~ 73 (689)
++++++++++++ . +|+..++++.+|++ +++|||||||+ +||+||| ++|+|+++..+ +++....|...
T Consensus 210 ~~~~l~~~~~~~--~-~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~~~viyvW~da~~~---y~s~~~~~~~~ 283 (560)
T 3h99_A 210 FSEMLQAWTRSG--A-LQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIG---LMGSFKNLCDK 283 (560)
T ss_dssp GHHHHHHHHHTS--C-SCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--C-CCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCCCceEEeCcccchh---HHHHHHHHhhc
Confidence 467889999864 3 57778999999999 69999999998 8899999 45555543211 00000000000
Q ss_pred CChHHHHHHhhhccccccCCcccccccc-ccccccccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeeecc
Q psy944 74 RSKEEAEQKAISKFNVTQADISLRQDED-VLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSL 152 (689)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d-v~D~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSKS~ 152 (689)
.+. ......+| ..+.+ .+.+++|+++.+||...||+.+...+..+|++|++||++++ +|+|||||+
T Consensus 284 ~~~----~~~~~~~w--------p~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~v~~-~G~KMSKS~ 350 (560)
T 3h99_A 284 RGD----SVSFDEYW--------KKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTV-NGAKMSKSR 350 (560)
T ss_dssp HTC----SSHHHHHH--------BTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEEE-TTEECCTTT
T ss_pred cCC----hhhHHHhC--------cCCCCceeEEEeccccchhHHHHHHHHHHhCCCCCCcEEEEEeEEEe-CCeeccccC
Confidence 000 00011111 01111 23456899999999999999877677778999999999995 999999999
Q ss_pred CCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 153 GNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 153 gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
||+|+|.+++++||+|++||||++.++
T Consensus 351 GNvv~p~d~i~~~GaDalR~~ll~~~~ 377 (560)
T 3h99_A 351 GTFIKASTWLNHFDADSLRYYYTAKLS 377 (560)
T ss_dssp TCCCBHHHHHHHSCHHHHHHHHHHHCC
T ss_pred CCcCCHHHHHHHcCcHHHHHHHHHhCC
Confidence 999999999999999999999998654
No 37
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.80 E-value=3.2e-21 Score=216.79 Aligned_cols=150 Identities=25% Similarity=0.389 Sum_probs=112.4
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHc-cCCCeeccc--CC-ccccccce-----EEEeCCCCCCCCCcccccceee
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLE-NNRDWCISR--QL-WWGHRIPA-----YYVSFNDPAKKPKNVTEYELWV 71 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~ISR--qr-~WG~pIP~-----~y~~~~~~~~~~~~~~~~~~~~ 71 (689)
+++++++++++++..+.|+..++++.+|++ +++|||||| |+ .||+|||. +|+|++..
T Consensus 169 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~-------------- 234 (497)
T 2csx_A 169 YQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDAL-------------- 234 (497)
T ss_dssp SHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHH--------------
T ss_pred HHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccc--------------
Confidence 468899999987777889999999999997 599999999 76 69999993 23332211
Q ss_pred cCCChHHHHHHhhhccccccCCccccccccccccccccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeeec
Q psy944 72 SGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKS 151 (689)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSKS 151 (689)
...+..... .....+ ..| -+..|+++.+||...||+.+...+..+|+.+++||++++ +|+|||||
T Consensus 235 ---------~~~~s~~~~-~~~~~~--p~d--i~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~G~KMSKS 299 (497)
T 2csx_A 235 ---------FNYISALED-KVEIYW--PAD--LHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTV-EGKKMSKT 299 (497)
T ss_dssp ---------THHHHTTTT-THHHHC--SCS--CEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEES-SSSBCCTT
T ss_pred ---------hhhcccCCC-cchhhC--Cce--EEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEe-CCceeCCc
Confidence 000110000 000001 011 133678888899989998766667778999999999995 99999999
Q ss_pred cCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 152 LGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 152 ~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
+||+|+|.+++++||+|++|||+++.++
T Consensus 300 ~GN~i~~~dli~~~g~DalR~~ll~~~~ 327 (497)
T 2csx_A 300 LGNVVDPYEVVQEYGLDEVRYFLLREVP 327 (497)
T ss_dssp TTCCCCHHHHHHHHCHHHHHHHHHHSSC
T ss_pred CCCCCCHHHHHHHCCcHHHHHHHHhcCC
Confidence 9999999999999999999999998554
No 38
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.74 E-value=8.6e-18 Score=184.14 Aligned_cols=127 Identities=13% Similarity=0.076 Sum_probs=110.9
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHH
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEK 315 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~ 315 (689)
+..+....|+|+|.+||||++++++.|+++||+||+||+|.+++|+|++|.+|..++++ .|..
T Consensus 25 ~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~-----~g~~------------ 87 (462)
T 3tqo_A 25 KVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGE-----NKES------------ 87 (462)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHH-----TTSC------------
T ss_pred eEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHH-----cCCC------------
Confidence 44455567899999999999999999999999999999999999999999998877754 2322
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeee-cccccccCCCC
Q psy944 316 VWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRS-ERLVHWSCSLK 382 (689)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~-~~~v~w~~~~~ 382 (689)
++++++++.+.+++++++||++.|+..+..| .|...++++|.+|.++|++|++ ...|+||+.+-
T Consensus 88 ~~e~a~~~~~~f~~d~~~LgI~~d~~~praT---e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~ 152 (462)
T 3tqo_A 88 PAALAERFIQILHEDEKALRVLSPDQEPRAT---QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF 152 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCSBCCBGG---GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccccChh---hHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc
Confidence 6688999999999999999999997665544 7999999999999999999999 68999998765
No 39
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.71 E-value=1.1e-17 Score=184.21 Aligned_cols=124 Identities=18% Similarity=0.121 Sum_probs=96.3
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCc----------ccccChHHHHHHHHHHHHhccccc
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGC----------DHAGIATQVVVEKKLWREEKKTRH 305 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~----------D~~Glpie~~~e~~l~~~~~~~~~ 305 (689)
++++ .+|+|+|.+||||++++++.|+++||+||+||+|.|++|+ |+||.+|+.++++ .|..
T Consensus 44 ~~Yv--cgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~-----~g~~-- 114 (501)
T 3sp1_A 44 KVYA--CGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTARE-----KGLT-- 114 (501)
T ss_dssp EEEE--CCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC------------------------CC--
T ss_pred eEEe--CCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHH-----cCCC--
Confidence 4555 4577779999999999999999999999999999999764 6678888777654 2322
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCC
Q psy944 306 EIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSL 381 (689)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~ 381 (689)
++++++++.+.+++++++||++.|| +.+.++.|...++++|.+|+++|++|++...|+||+.+
T Consensus 115 ----------~~e~a~~~~~~f~~d~~~Lgi~~d~---~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~ 177 (501)
T 3sp1_A 115 ----------VYEISEFFTEAFFNDCRKLNIVYPD---KVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC 177 (501)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHTTCCCCS---EEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred ----------HHHHHHHHHHHHHHHHHHcCCCCCC---cccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc
Confidence 4578899999999999999999997 33567899999999999999999999999999999866
No 40
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.67 E-value=1.5e-16 Score=174.00 Aligned_cols=122 Identities=17% Similarity=0.091 Sum_probs=102.1
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHH
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIE 314 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~ 314 (689)
.+++++ .|+|+|++||||+|+++++|+++||+|++||+|.+++|+|+||.+|+.++++ .|..
T Consensus 40 v~~y~~--gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~-----~g~~----------- 101 (414)
T 3c8z_A 40 ATMYVC--GITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAER-----DGID----------- 101 (414)
T ss_dssp EEEEEC--CCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHH-----HTCC-----------
T ss_pred ceEEeC--CCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHH-----cCCC-----------
Confidence 345554 5788899999999999999999999999999999999999999999887764 2322
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc-cccCCccccCChhhHHHHHHHHHHHHHcCCeeeec----ccccccC
Q psy944 315 KVWEWKKEKGDRIYEQMKLMGSS-LDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSE----RLVHWSC 379 (689)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~lGi~-~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~----~~v~w~~ 379 (689)
+.++++.+.+.|++++++||+. .| .+..|++ |...++++|.+|.++|++|++. ..++++.
T Consensus 102 -~~~~~~~~~~~~~~~~~~Lgi~~~d--~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~ 166 (414)
T 3c8z_A 102 -WRTLGDRETQLFREDMAALRVLPPH--DYVAATD--AIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRA 166 (414)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTCCCCS--EEEEGGG--CHHHHHHHHHHHHHHTSEEECSCSSCCCEEECT
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCCCc--ceecccc--hHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEc
Confidence 3467888999999999999998 77 4555654 8889999999999999999987 5555543
No 41
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.53 E-value=2.3e-14 Score=158.55 Aligned_cols=125 Identities=12% Similarity=0.050 Sum_probs=103.6
Q ss_pred CCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHH
Q psy944 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFI 313 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~ 313 (689)
+-+++++. |+|+|++||||+|++++.|+++||+++.||+|.+..+++++|.+|..++.+ .|..
T Consensus 22 ~v~~yv~g--Pt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~-----~g~~---------- 84 (461)
T 1li5_A 22 EVGMYVCG--ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANE-----NGES---------- 84 (461)
T ss_dssp EEEEEECC--CBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHH-----TTCC----------
T ss_pred CeeEEEcC--CcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHH-----cCCC----------
Confidence 34566664 566699999999999999999999999999999999999999887766543 2332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-ccCCccccCChhhHHHHHHHHHHHHHcCCeeee-cccccccCCC
Q psy944 314 EKVWEWKKEKGDRIYEQMKLMGSSL-DWDRACFTMDPKLSRAVTEAFVILHEAGDIYRS-ERLVHWSCSL 381 (689)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~lGi~~-Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~-~~~v~w~~~~ 381 (689)
+.++++.+.+.+++++++||+.. |+ +..|+ .|...++.++.+|.++|++|.+ ...|+||..+
T Consensus 85 --~~~~~~~~~~~f~~~~~~LgI~~~d~--~~r~t--~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~ 148 (461)
T 1li5_A 85 --FVAMVDRMIAEMHKDFDALNILRPDM--EPRAT--HHIAEIIELTEQLIAKGHAYVADNGDVMFDVPT 148 (461)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTCCCCSB--CCBGG--GCHHHHHHHHHHHHHTTSEEECTTSCEEECGGG
T ss_pred --HHHHHHHHHHHHHHHHHHcCCCCCcc--ccccc--chHHHHHHHHHHHHHCCCEEEecCCCEEEeccc
Confidence 45678889999999999999997 53 33444 3889999999999999999999 8889999755
No 42
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.28 E-value=4.7e-12 Score=144.44 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=97.9
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccc-cCHH----
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHE-IGRE---- 310 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~-~~~~---- 310 (689)
+..|...-|||||++||||+|+.+++|+++|++++.||+|.+...+++.|.++...+.. . .+.|..... ....
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~-~-~~~g~d~~~~~~~d~~~g 181 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFA-L-RHYGLTWDGKEKYDHFAG 181 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHH-H-HHTTCCCCSSSCHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHH-H-HHhCCcccCCCCcchhHH
Confidence 56788889999999999999999999999999999999999998888888765432210 0 011111000 0000
Q ss_pred --------------------HHHH--H---HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHc
Q psy944 311 --------------------KFIE--K---VWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEA 365 (689)
Q Consensus 311 --------------------~~~~--~---~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~k 365 (689)
+... + +.++++.+.+.+++.+++|||.+| .+..|++..+...++.++.+|.++
T Consensus 182 ~~y~~~~~~~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~D--~~~~es~~~~~~~v~~~~~~L~~k 259 (592)
T 1iq0_A 182 RAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYD--LLVWESDIVRAGLLQKALALLEQS 259 (592)
T ss_dssp HHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCS--EEEEHHHHHHTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEeE--EeccCCcccccchHHHHHHHHHHC
Confidence 0000 0 257788889999999999999987 566777666688999999999999
Q ss_pred CCeee
Q psy944 366 GDIYR 370 (689)
Q Consensus 366 Gliy~ 370 (689)
|++|+
T Consensus 260 G~~y~ 264 (592)
T 1iq0_A 260 PHVFR 264 (592)
T ss_dssp TTEEC
T ss_pred CCccc
Confidence 99994
No 43
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.27 E-value=8.1e-12 Score=143.01 Aligned_cols=149 Identities=20% Similarity=0.163 Sum_probs=107.6
Q ss_pred CCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHH--HHHHHh-----------
Q psy944 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEK--KLWREE----------- 300 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~--~l~~~~----------- 300 (689)
.++..|...-|||+|++||||+|+.+++|+++|++++.||+|.+..+++++|.++...+.. ..+.+.
T Consensus 118 ~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~ 197 (629)
T 2zue_A 118 GKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERG 197 (629)
T ss_dssp TCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccc
Confidence 4567888889999999999999999999999999999999999999999999987543321 111100
Q ss_pred -ccccc---------cc-------------CHHHHH--HH----HHHHHHHHHHHHHHHHHHhccccccCCccccCChhh
Q psy944 301 -KKTRH---------EI-------------GREKFI--EK----VWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKL 351 (689)
Q Consensus 301 -~~~~~---------~~-------------~~~~~~--~~----~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~ 351 (689)
...+. .. .++.+. +. .+.+++.+.+.+++.+++|||.+| .++.|++..+
T Consensus 198 ~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D--~~~~es~~~~ 275 (629)
T 2zue_A 198 LKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYD--LLVWESDIVR 275 (629)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCS--EEEEHHHHHH
T ss_pred cccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccc--cccCcCcccc
Confidence 00000 00 000000 00 056677888999999999999997 6677777766
Q ss_pred HHHHHHHHHHHHHcCCee---eecccccccCCCCcc
Q psy944 352 SRAVTEAFVILHEAGDIY---RSERLVHWSCSLKSA 384 (689)
Q Consensus 352 ~~~v~~~f~~L~~kGliy---~~~~~v~w~~~~~t~ 384 (689)
...++.++.+|.++|++| +|.....||-.+...
T Consensus 276 ~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~ 311 (629)
T 2zue_A 276 RKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKL 311 (629)
T ss_dssp TTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTT
T ss_pred chhHHHHHHHHHHCCCccccccCCcCCcEEEECccc
Confidence 889999999999999999 344445556555443
No 44
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.21 E-value=1e-12 Score=148.05 Aligned_cols=123 Identities=14% Similarity=0.054 Sum_probs=90.4
Q ss_pred eecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccccc--ChH--H-HHHHHHHHHHhcccccccCHHHH
Q psy944 238 VMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAG--IAT--Q-VVVEKKLWREEKKTRHEIGREKF 312 (689)
Q Consensus 238 ~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~G--lpi--e-~~~e~~l~~~~~~~~~~~~~~~~ 312 (689)
+++...|+|||.+||||+|++++.|+++||++++|++|.|+.++|++| -.+ . ..+.+ ...|..+.+++.. |
T Consensus 22 yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~---~~~G~~~~~~p~p-~ 97 (523)
T 1irx_A 22 YVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWK---DYLGMPISEVPDP-W 97 (523)
T ss_dssp EEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGG---GGTTSBGGGSCCT-T
T ss_pred EEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHH---HHcCCCcccCCcc-h
Confidence 444446899999999999999999999999999999999999999999 322 1 11100 0013333222221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHH-HHHHHHHHHHHcC-Cee
Q psy944 313 IEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSR-AVTEAFVILHEAG-DIY 369 (689)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~-~v~~~f~~L~~kG-liy 369 (689)
..|.++++.+.+.|++.|+.||+..|. |++++. |.. .++.++.+|.++| .||
T Consensus 98 -~~~~~~~~~~~~~~~~~l~~Lgi~~D~---~~~se~-~~~g~~~~~i~~L~~~G~~iy 151 (523)
T 1irx_A 98 -GCHESYAEHFMRKFEEEVEKLGIEVDL---LYASEL-YKRGEYSEEIRLAFEKRDKIM 151 (523)
T ss_dssp -SSSSSHHHHHHHHHHHHHHTTTCCCEE---EEHHHH-HHTTTTHHHHHHHHHTHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHHHHcCCCceE---Eechhh-ccchHHHHHHHHHHHchHHHH
Confidence 236778899999999999999997773 344433 666 8899999999999 444
No 45
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.18 E-value=1.7e-10 Score=127.07 Aligned_cols=138 Identities=21% Similarity=0.245 Sum_probs=99.2
Q ss_pred CCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHH--H--hccc---cc
Q psy944 233 PKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWR--E--EKKT---RH 305 (689)
Q Consensus 233 ~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~--~--~~~~---~~ 305 (689)
..++.+|-...|||+|++|+||+|+.+++|+++|+.++.||+|+.....++.|.++...+...... + .+.. ++
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~ 107 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPE 107 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCS
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCch
Confidence 446788888899999999999999999999999999999999999999999999985543221111 1 1111 11
Q ss_pred c---------cCH------------HHHHHHHHHHH-HHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHH
Q psy944 306 E---------IGR------------EKFIEKVWEWK-KEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILH 363 (689)
Q Consensus 306 ~---------~~~------------~~~~~~~~~~~-~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~ 363 (689)
+ +.. ++-...+++|. +...+.+++++++||+.+| ..+..+ ..|. .+..++..|.
T Consensus 108 ~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD--~~~~Es-s~~~-~~~~vv~~L~ 183 (464)
T 3fnr_A 108 QYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKID--SYVSER-SYYD-ALNATLESLK 183 (464)
T ss_dssp SCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCS--CEEEGG-GGST-THHHHHHHHH
T ss_pred hhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCce--eecCHH-HHHH-HHHHHHHHHH
Confidence 0 000 11122344554 4456889999999999999 333332 3334 8899999999
Q ss_pred HcCCeeeeccc
Q psy944 364 EAGDIYRSERL 374 (689)
Q Consensus 364 ~kGliy~~~~~ 374 (689)
++|++|+....
T Consensus 184 ~~g~~~e~dGa 194 (464)
T 3fnr_A 184 EHKGIYEQEGK 194 (464)
T ss_dssp HTTCEEEETTE
T ss_pred HCCCEEEeCCe
Confidence 99999997644
No 46
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.14 E-value=1.5e-10 Score=131.61 Aligned_cols=141 Identities=12% Similarity=0.119 Sum_probs=100.6
Q ss_pred CCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHH--HHHH------------
Q psy944 233 PKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEK--KLWR------------ 298 (689)
Q Consensus 233 ~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~--~l~~------------ 298 (689)
..++.+|...-|||+|++|+||+|+.+++|+++|+.+..||+|.+...+++.|.++...+.. +.+.
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l 220 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHL 220 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHH
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHH
Confidence 34568888889999999999999999999999999999999999999999999887543311 0000
Q ss_pred ------------Hh---c---ccccc----------cCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChh
Q psy944 299 ------------EE---K---KTRHE----------IGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPK 350 (689)
Q Consensus 299 ------------~~---~---~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~ 350 (689)
+. | ....+ -+.++..+..+.+++...+.+++++++||+.+| .+..+++ .
T Consensus 221 ~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD--~~~~ES~-~ 297 (607)
T 1f7u_A 221 FDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYD--VYSGESQ-V 297 (607)
T ss_dssp HHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCS--EEEEGGG-C
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcce--eecCcch-h
Confidence 00 0 00000 011122222345667778999999999999997 3333332 2
Q ss_pred hHHHHHHHHHHHHHcCCeeeeccccc
Q psy944 351 LSRAVTEAFVILHEAGDIYRSERLVH 376 (689)
Q Consensus 351 ~~~~v~~~f~~L~~kGliy~~~~~v~ 376 (689)
+...+..++..|.++|++|+....++
T Consensus 298 ~~~~~~~vi~~L~~kG~~ye~dGa~~ 323 (607)
T 1f7u_A 298 SKESMLKAIDLFKEKGLTHEDKGAVL 323 (607)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETTEEE
T ss_pred hhhHHHHHHHHHHhCCCEEEECCcEE
Confidence 23688999999999999999765443
No 47
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=98.97 E-value=4.1e-11 Score=131.99 Aligned_cols=84 Identities=20% Similarity=0.137 Sum_probs=52.1
Q ss_pred ccCCcceeeecCCccccccccCcCceEEEc-ceeeCCCCceeeeccCCccCchhhhhc-CChhhHHHHHhhcC---chh-
Q psy944 108 SSGLFPFSVFGWPDKQRLSANGIHSEVFLH-PIVRDAHGRKMSKSLGNVIDPLDVVKG-ISLAGLQGRLLQDS---NLE- 181 (689)
Q Consensus 108 ~S~~~~~~~~~wp~~~~l~~~~~~k~v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~~-~~~d~~r~~l~~~~---~~~- 181 (689)
|+++.++|...|++.+......+|.++++| |++. .+|+|||||+||+++|.+++++ ||+|++||||++.. +++
T Consensus 260 G~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~-~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~~yr~~l~f 338 (501)
T 3sp1_A 260 GVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLI-MDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKF 338 (501)
T ss_dssp EGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEE-CC----------CCCHHHHHHTTCCHHHHHHHHHTSCTTSCEEC
T ss_pred ccccccchHHHHHHHHHHccCCCCCeEEEEeeeEe-eCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhccCCCCCcc
Confidence 455555555555555443333578999999 8887 7999999999999999999999 99999999999862 233
Q ss_pred HHHHHhhhccc
Q psy944 182 AAERQRAADGQ 192 (689)
Q Consensus 182 ~~~~~~a~~~~ 192 (689)
+.+.+..+...
T Consensus 339 s~~~l~~a~~~ 349 (501)
T 3sp1_A 339 SLDNLQASKIA 349 (501)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 34444444444
No 48
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=98.95 E-value=7.8e-11 Score=128.77 Aligned_cols=74 Identities=19% Similarity=0.120 Sum_probs=50.7
Q ss_pred ccccc-cccCCcceeeecCCcccccc-ccCcCceEEEc-ceeeCCCCceeeeccCCccCchhhhhc-CChhhHHHHHhh
Q psy944 102 VLDTW-FSSGLFPFSVFGWPDKQRLS-ANGIHSEVFLH-PIVRDAHGRKMSKSLGNVIDPLDVVKG-ISLAGLQGRLLQ 176 (689)
Q Consensus 102 v~D~W-f~S~~~~~~~~~wp~~~~l~-~~~~~k~v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~~-~~~d~~r~~l~~ 176 (689)
.+|.+ .|+++.++|...||+.+... +..+|.++++| |++. .+|+|||||+||+|+|.+++++ ||+|++||||++
T Consensus 244 ~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~ 321 (414)
T 3c8z_A 244 GLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFS 321 (414)
T ss_dssp CEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC--------------CBHHHHHHTTCCHHHHHHHHHT
T ss_pred CceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCCeEcccccCCcCCHHHHhhccCCcchheeEEEe
Confidence 34433 57899999999998876554 45578999999 7887 6999999999999999999999 999999999997
No 49
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=98.87 E-value=2.7e-10 Score=125.88 Aligned_cols=69 Identities=23% Similarity=0.146 Sum_probs=58.2
Q ss_pred cccCCcceeeecCCcccccc-ccCcCceEEEc-ceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc
Q psy944 107 FSSGLFPFSVFGWPDKQRLS-ANGIHSEVFLH-PIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 107 f~S~~~~~~~~~wp~~~~l~-~~~~~k~v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
.|+++.++|...||+.+... +. ++.+.++| |+++ .+|+|||||+||+|+|.+++++||+|++|||+++.
T Consensus 226 gG~Dl~fpH~~~~~aq~~a~~g~-~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~ 296 (461)
T 1li5_A 226 GGSDLMFPHHENEIAQSTCAHDG-QYVNYWMHSGMVM-VDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSG 296 (461)
T ss_dssp CBGGGTTTHHHHHHHHHHHHSSS-CCEEEECCBCCEE-ETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSS
T ss_pred ccCccCchHHHHHHHHHHHhcCC-CCCcEEEEeeEEE-ECCeEccccCCCccChhHHhhhCCHHHHHHHHHcC
Confidence 57899999999999875543 44 44555565 8998 58999999999999999999999999999999974
No 50
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=98.69 E-value=2.2e-09 Score=117.61 Aligned_cols=48 Identities=29% Similarity=0.367 Sum_probs=45.0
Q ss_pred cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc
Q psy944 130 IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 130 ~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
++.++++|+.+++.+|+|||||+||+++|.+++++||+|++|||++++
T Consensus 252 p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~ 299 (462)
T 3tqo_A 252 PFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSG 299 (462)
T ss_dssp CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHS
T ss_pred CcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccC
Confidence 578999997777799999999999999999999999999999999976
No 51
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=97.99 E-value=2.3e-06 Score=96.20 Aligned_cols=52 Identities=19% Similarity=0.058 Sum_probs=35.0
Q ss_pred ccCcCceEEEcceeeCC-CCceeeeccCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 127 ANGIHSEVFLHPIVRDA-HGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 127 ~~~~~k~v~~hg~~~~~-~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
+..+| ..+.||++++. +|+|||||+||++++.++++.|++|++|+||+..++
T Consensus 259 G~~~p-~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~~~ 311 (523)
T 1irx_A 259 GKEAP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRP 311 (523)
T ss_dssp CCCCC-BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCT
T ss_pred CCCCC-eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhcCC
Confidence 44456 45556999976 699999999999999999999999999999997543
No 52
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=97.98 E-value=2e-06 Score=94.55 Aligned_cols=52 Identities=33% Similarity=0.337 Sum_probs=40.8
Q ss_pred ccCcCc-eEEEccee-eCCCCc--eeeeccCCccCchhhhhcCChhhHHHHHhhcC
Q psy944 127 ANGIHS-EVFLHPIV-RDAHGR--KMSKSLGNVIDPLDVVKGISLAGLQGRLLQDS 178 (689)
Q Consensus 127 ~~~~~k-~v~~hg~~-~~~~g~--KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~ 178 (689)
|..+++ .++.||++ ++.+|+ |||||+||+|+|.++++++|+|++|||+++..
T Consensus 261 G~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~~ 316 (464)
T 3fnr_A 261 GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKK 316 (464)
T ss_dssp TCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSSC
T ss_pred CCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhcC
Confidence 333444 67889999 556775 99999999999999999999999999999754
No 53
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.91 E-value=2e-05 Score=87.14 Aligned_cols=96 Identities=24% Similarity=0.261 Sum_probs=68.8
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHH
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEK 315 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~ 315 (689)
.++++--.|+|||+|||||++++++.|.+||. ..|+-+++.- +...+-
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRie---DtD~~r--------------------------- 59 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIE---DTDLER--------------------------- 59 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBC---CSSCCS---------------------------
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEe---cCCccc---------------------------
Confidence 45666678999999999999999999999997 6788777633 332210
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCC---------ccccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 316 VWEWKKEKGDRIYEQMKLMGSSLDWDR---------ACFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~lGi~~Dw~~---------~~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
....+.+.|.++|+.+|+..| . .|+ ..++....+.+..+|.++|++|.
T Consensus 60 ---~~~~~~~~I~~~l~wlGl~~d--e~p~~gg~~g~y~--QS~r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 60 ---SEREYEEKLMESLRWLGLLWD--EGPDVGGDHGPYR--QSERVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp ---GGGHHHHHHHHHHHHHTCCCS--BBTTTBCTTCCCB--GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred ---cHHHHHHHHHHHHHHcCCCCC--CCcccCCCCCcee--eeccHHHHHHHHHHHHHCCCeeE
Confidence 011234667888999998544 3 233 33556677889999999999985
No 54
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=97.86 E-value=1.3e-05 Score=82.96 Aligned_cols=90 Identities=21% Similarity=0.296 Sum_probs=62.2
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Q psy944 243 PPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKE 322 (689)
Q Consensus 243 pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (689)
+|.|||+|||||++++++....||-. .|.-++ -+++.--+ + . ...
T Consensus 11 APsPtG~LHiG~~rtal~n~l~Ar~~--~g~~il---RieDtD~~------R--------~----------------~~~ 55 (298)
T 1nzj_A 11 APSPSGELHFGSLIAALGSYLQARAR--QGRWLV---RIEDIDPP------R--------E----------------VPG 55 (298)
T ss_dssp CCCTTSCCCHHHHHHHHHHHHHHHHT--TCEEEE---EECCSCGG------G--------S----------------CTT
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHhc--CCeEEE---EEecCCch------h--------h----------------HHH
Confidence 68999999999999999766666632 444343 44442111 0 0 123
Q ss_pred HHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHHHcCCeeee
Q psy944 323 KGDRIYEQMKLMGSSLDWDR-ACFTMDPKLSRAVTEAFVILHEAGDIYRS 371 (689)
Q Consensus 323 ~~~~~~~~l~~lGi~~Dw~~-~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 371 (689)
+.+.|.++|+.||+..| . .++. .++....+.+..+|.++|++|..
T Consensus 56 ~~~~I~~dL~~LGl~~D--~~~~~q--Ser~~~y~~~~~~L~~~G~aY~c 101 (298)
T 1nzj_A 56 AAETILRQLEHYGLHWD--GDVLWQ--SQRHDAYREALAWLHEQGLSYYC 101 (298)
T ss_dssp HHHHHHHHHHHTTCCCS--SCCEEG--GGCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCCCC--CCCeee--eCCHHHHHHHHHHHHHcCCcccC
Confidence 45789999999998666 3 3333 24567888999999999999973
No 55
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=97.71 E-value=8.1e-05 Score=82.60 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=64.4
Q ss_pred ecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHH
Q psy944 239 MVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWE 318 (689)
Q Consensus 239 i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ 318 (689)
++==+|.|||+||||||+++++...+|| ...|.-++ -+|+.--+ +
T Consensus 28 ~tRFaPSPtG~LHIGhaRtal~n~l~Ar--~~gG~fiL---RieDTD~~------R------------------------ 72 (553)
T 1qtq_A 28 HTRFPPEPNGYLHIGHAKSICLNFGIAQ--DYKGQCNL---RFDDTNPV------K------------------------ 72 (553)
T ss_dssp EEEECCCTTSCCBHHHHHHHHHHHHHHH--HTTCEEEE---EECCCCGG------G------------------------
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEE---EECCCCch------h------------------------
Confidence 3444789999999999999999888887 33454444 44443111 0
Q ss_pred HHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeee
Q psy944 319 WKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRS 371 (689)
Q Consensus 319 ~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 371 (689)
....+.+.|.++|+.||+..|- ..++. .+|.........+|.++|++|.-
T Consensus 73 ~~~e~~~~I~edL~wLGl~wde-~~~~q--Ser~~~~~~~a~~Li~~G~AY~c 122 (553)
T 1qtq_A 73 EDIEYVESIKNDVEWLGFHWSG-NVRYS--SDYFDQLHAYAIELINKGLAYVD 122 (553)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSS-SCEEG--GGGHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHHHHHHcCCCCCC-CCeeh--cccHHHHHHHHHHHHHCCCceec
Confidence 0234568899999999986653 23332 34555555666799999999963
No 56
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.69 E-value=3.1e-05 Score=85.87 Aligned_cols=94 Identities=21% Similarity=0.245 Sum_probs=67.8
Q ss_pred eecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHH
Q psy944 238 VMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVW 317 (689)
Q Consensus 238 ~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 317 (689)
+++==+|.|||+|||||++++++...+|| +|.+.|..-+|+.--+ + .
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~------R-------~--------------- 143 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR------R-------V--------------- 143 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG------G-------C---------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc------c-------c---------------
Confidence 44555799999999999999999777776 3444455555553211 0 0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 318 EWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 318 ~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
...+.+.|.++|+.||+..| ..++ ..+|.........+|.++|++|.
T Consensus 144 --~~e~~~~I~edL~wLGl~wd--~~~~--qSdr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 144 --DPEAYDMIPADLEWLGVEWD--ETVI--QSDRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp --CTTHHHHHHHHHHHHTCCCS--EEEE--GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred --cHHHHHHHHHHHHHcCCCCC--CCcc--cccCHHHHHHHHHHHHHcCCcee
Confidence 12356789999999998665 4433 35778888999999999999996
No 57
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=97.60 E-value=1.5e-05 Score=90.72 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=37.2
Q ss_pred eEEEcceeeCCCCceeeeccCCccCchhhhhc-------------------------CChhhHHHHHhhcCc
Q psy944 133 EVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKG-------------------------ISLAGLQGRLLQDSN 179 (689)
Q Consensus 133 ~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~-------------------------~~~d~~r~~l~~~~~ 179 (689)
..+.||+++ .+|+|||||+||+|++.+++++ +|.|++|||+|+..+
T Consensus 381 ~H~~~g~v~-~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~ 451 (592)
T 1iq0_A 381 HHLAYETVL-LEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEP 451 (592)
T ss_dssp EEEEECCEE-ETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCT
T ss_pred EEEEeeEEE-cCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCC
Confidence 356789998 6899999999999999999999 999999999997543
No 58
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.58 E-value=0.00012 Score=82.64 Aligned_cols=95 Identities=24% Similarity=0.229 Sum_probs=67.3
Q ss_pred eeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHH
Q psy944 237 FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKV 316 (689)
Q Consensus 237 f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~ 316 (689)
..+=.+ |.|||+||+||++++++.+.+||. ..|.-+++.--+|. + + .
T Consensus 130 v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRieDtD~---~----------------r---~-------- 176 (592)
T 3al0_C 130 VRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDT---E----------------R---S-------- 176 (592)
T ss_dssp CEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCS---S----------------S---C--------
T ss_pred EEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEecCcCh---h----------------h---c--------
Confidence 333344 999999999999999999999995 45665554422221 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCc---------cccCChhhHHHHHHHHHHHHHcCCeeee
Q psy944 317 WEWKKEKGDRIYEQMKLMGSSLDWDRA---------CFTMDPKLSRAVTEAFVILHEAGDIYRS 371 (689)
Q Consensus 317 ~~~~~~~~~~~~~~l~~lGi~~Dw~~~---------~~T~d~~~~~~v~~~f~~L~~kGliy~~ 371 (689)
...+.+.|.++|+.+|+..| .. |+. .++....+.+..+|.++|++|..
T Consensus 177 ---~~~~~~~I~~dL~wlGl~~D--~~~~~gG~~gp~~q--Ser~~~y~~~~~~L~~~G~aY~c 233 (592)
T 3al0_C 177 ---SREYEQQILESLRWCGLDWD--EGPDIGGDFGPYRQ--SERLEIYREYAEKLVEDKRAYYV 233 (592)
T ss_dssp ---CHHHHHHHHHHHHHTTCCCS--BBTTTBCTTCCCBS--TTCHHHHHHHHHHHHHTTTEEEE
T ss_pred ---cHHHHHHHHHHHHHcCCCCC--CCCCcCCCCCCeee--eCCHHHHHHHHHHHHHcCCceEe
Confidence 12345779999999998654 52 333 34457888999999999999974
No 59
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.55 E-value=8.6e-05 Score=86.07 Aligned_cols=95 Identities=21% Similarity=0.269 Sum_probs=66.9
Q ss_pred ecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHH
Q psy944 239 MVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWE 318 (689)
Q Consensus 239 i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ 318 (689)
++==+|.|||+|||||++++++...+||- ..| .|..-+|+.--. +
T Consensus 68 ~tRFaPSPtG~LHIGhARtAL~n~l~Ar~--~gG---~fiLRIEDTD~~------R------------------------ 112 (851)
T 2hz7_A 68 VTRFPPDPSGYAHLGHVFASLLDFNTARQ--YGG---QFNLRMDDTNPE------L------------------------ 112 (851)
T ss_dssp EEEECCCSSSCCBHHHHHHHHHHHHHHHH--TTC---EEEEEECCCCTT------T------------------------
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHHH--cCC---EEEEEECcCCcc------c------------------------
Confidence 33347899999999999999998777773 344 444455543211 0
Q ss_pred HHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeee
Q psy944 319 WKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRS 371 (689)
Q Consensus 319 ~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 371 (689)
-...+.+.|.++|+.||+..|- ..++ ..+|.........+|.++|++|..
T Consensus 113 ~~~e~~~~IledL~wLGl~wde-~~~~--qSer~d~y~e~a~~LI~~G~AY~c 162 (851)
T 2hz7_A 113 ARQEYVDSIADDLKWLGLDWGE-HFYY--ASDYFDRYYAYAEQLIRQGDAYVE 162 (851)
T ss_dssp CCHHHHHHHHHHHHHHTCCCTT-CEEE--GGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHcCCCCCC-Cccc--HhhhHHHHHHHHHHHHHCCCcEee
Confidence 0234568899999999986652 3333 346778888999999999999963
No 60
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.53 E-value=0.00015 Score=79.77 Aligned_cols=90 Identities=26% Similarity=0.360 Sum_probs=65.7
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Q psy944 243 PPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKE 322 (689)
Q Consensus 243 pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (689)
+|.|||.|||||++++++...++|. ..|.-++..--+|.. + ....
T Consensus 31 APSPTG~lHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~---------R------------------------~~~~ 75 (490)
T 4g6z_A 31 APSPTGFIHLGNIRSALYPWAFARK--MKGTFVLRIEDTDVE---------R------------------------SSQE 75 (490)
T ss_dssp CCCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCGG---------G------------------------CCHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEeCCCCcc---------c------------------------ccHH
Confidence 5999999999999999999998885 366666654444420 0 0123
Q ss_pred HHHHHHHHHHHhccccccCCc-cccCChhhHHHHHHHHHHHHHcCCeeee
Q psy944 323 KGDRIYEQMKLMGSSLDWDRA-CFTMDPKLSRAVTEAFVILHEAGDIYRS 371 (689)
Q Consensus 323 ~~~~~~~~l~~lGi~~Dw~~~-~~T~d~~~~~~v~~~f~~L~~kGliy~~ 371 (689)
+.+.|.++|+.||+. |+.. |. ...+....+.++.+|.++|++|.-
T Consensus 76 ~~~~i~~dl~wlGl~--~d~~~~~--qS~r~~~y~~~~~~Li~~G~aY~C 121 (490)
T 4g6z_A 76 AVDAILEGMAWLGLD--YDEGPYY--QMQRMDRYREVLAQMQEKGLVYPC 121 (490)
T ss_dssp HHHHHHHHHHHTTCC--CSEEEEE--GGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCC--CCCCCcc--cccCHHHHHHHHHHHHHCCCEEeC
Confidence 567889999999985 4442 33 345667888899999999999853
No 61
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=97.37 E-value=0.00014 Score=80.37 Aligned_cols=89 Identities=26% Similarity=0.396 Sum_probs=61.6
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Q psy944 243 PPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKE 322 (689)
Q Consensus 243 pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (689)
+|.|||.|||||++++++.-.+||- ..|.-++ -+++.-.+ + . ...
T Consensus 7 APSPtG~lHiG~artal~n~l~Ar~--~~G~fil---RieDtD~~------R----------~--------------~~~ 51 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYARH--RGGKFIL---RIEDTDRE------R----------S--------------RPE 51 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHH--TTCEEEE---EECCCSSS------S----------C--------------CHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEE---EEeeCCcc------c----------c--------------chH
Confidence 6899999999999999997766663 3444444 44443111 0 0 123
Q ss_pred HHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 323 KGDRIYEQMKLMGSSLDWDR-ACFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 323 ~~~~~~~~l~~lGi~~Dw~~-~~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
+.+.|.++|+.||+. |+. .|+. .++......+..+|.++|++|.
T Consensus 52 ~~~~i~~dL~wLGl~--wde~~~~Q--S~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 52 YTENILEGLQWLGLT--WDEGPYFQ--SDRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHHHHHHHTTCC--CSEEEEEG--GGCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCC--CCCCCccc--cCCHHHHHHHHHHHHHCCCceE
Confidence 457889999999974 444 3332 4556678888999999999996
No 62
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=97.32 E-value=6.4e-05 Score=86.01 Aligned_cols=46 Identities=15% Similarity=0.118 Sum_probs=41.5
Q ss_pred eEEEcceeeCCCCceeeeccC--CccCchhhhhc---------------------------CChhhHHHHHhhcCc
Q psy944 133 EVFLHPIVRDAHGRKMSKSLG--NVIDPLDVVKG---------------------------ISLAGLQGRLLQDSN 179 (689)
Q Consensus 133 ~v~~hg~~~~~~g~KmSKS~g--n~~~~~~~~~~---------------------------~~~d~~r~~l~~~~~ 179 (689)
.++.||+++ .+|.|||||+| |+|++++++++ +|.|++||++|+..+
T Consensus 411 ~h~~~g~V~-~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~~ 485 (629)
T 2zue_A 411 YHLAYEHVE-RPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYSP 485 (629)
T ss_dssp EEEEECCEE-BTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred EEEEeeeEE-cCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcCC
Confidence 467899998 68899999999 99999999999 999999999997543
No 63
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.23 E-value=0.00056 Score=76.24 Aligned_cols=94 Identities=22% Similarity=0.278 Sum_probs=63.2
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Q psy944 243 PPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKE 322 (689)
Q Consensus 243 pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (689)
+|.|||+|||||++++++.-.+||- ..|.-+++.==+|. +- -...
T Consensus 30 APsPtG~LHiG~artAl~n~~~Ar~--~~G~fiLRieDtD~---~R------------------------------~~~~ 74 (512)
T 4gri_A 30 APSPTGLQHIGGIRTALFNYFFAKS--CGGKFLLRIEDTDQ---SR------------------------------YSPE 74 (512)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEECBCCCCT---TS------------------------------CCHH
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC---Cc------------------------------CCHH
Confidence 7999999999999999999999983 45655553332322 10 0123
Q ss_pred HHHHHHHHHHHhccccccCCc----cc-cCChhhHHHHHHHHHHHHHcCCeeee
Q psy944 323 KGDRIYEQMKLMGSSLDWDRA----CF-TMDPKLSRAVTEAFVILHEAGDIYRS 371 (689)
Q Consensus 323 ~~~~~~~~l~~lGi~~Dw~~~----~~-T~d~~~~~~v~~~f~~L~~kGliy~~ 371 (689)
+.+.|.++|+-||+..|-.-. |. ....++...-+....+|.++|++|.-
T Consensus 75 ~~~~I~~~L~wlGl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C 128 (512)
T 4gri_A 75 AENDLYSSLKWLGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYC 128 (512)
T ss_dssp HHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCcccc
Confidence 457788999999987662110 00 01234455667888999999999964
No 64
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=97.21 E-value=0.00069 Score=74.73 Aligned_cols=92 Identities=24% Similarity=0.198 Sum_probs=64.9
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHH
Q psy944 241 IPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWK 320 (689)
Q Consensus 241 ~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ 320 (689)
==+|.|||.||+||+++.++.-.+||- ..|.-+++.==+|. + + -.
T Consensus 29 RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD~---~------R------------------------~~ 73 (488)
T 3afh_A 29 RFAPSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDT---E------R------------------------SS 73 (488)
T ss_dssp EECCCCSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCT---T------T------------------------CC
T ss_pred EECCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEEeeCCc---c------c------------------------cc
Confidence 346899999999999999988888874 45555554333332 1 0 01
Q ss_pred HHHHHHHHHHHHHhccccccCCc---------cccCChhhHHHHHHHHHHHHHcCCeeee
Q psy944 321 KEKGDRIYEQMKLMGSSLDWDRA---------CFTMDPKLSRAVTEAFVILHEAGDIYRS 371 (689)
Q Consensus 321 ~~~~~~~~~~l~~lGi~~Dw~~~---------~~T~d~~~~~~v~~~f~~L~~kGliy~~ 371 (689)
..+.+.|.++|+.||+..| .. |+. .++....+.+..+|.++|++|.-
T Consensus 74 ~~~~~~I~~dL~wlGl~wD--e~~~~gG~~gp~~Q--Ser~~~y~~~~~~L~~~G~aY~c 129 (488)
T 3afh_A 74 REYEQQILESLRWCGLDWD--EGPDIGGDFGPYRQ--SERLEIYREYAEKLVEDKRAYYV 129 (488)
T ss_dssp HHHHHHHHHHHHHTTCCCS--BBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHcCCCCC--cCCCCCCCCCCeee--eCCHHHHHHHHHHHHHcCCeEec
Confidence 2345779999999998644 52 333 34557888999999999999974
No 65
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=97.10 E-value=0.00071 Score=74.32 Aligned_cols=93 Identities=20% Similarity=0.207 Sum_probs=64.2
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Q psy944 243 PPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKE 322 (689)
Q Consensus 243 pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (689)
+|.|||.||+||++++++.-.+||- ..|.-+++ +|+.-.+ + . ...
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filR---ieDtD~~------R-------~-----------------~~~ 51 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWARR--NGGRFIVR---IEDTDRA------R-------Y-----------------VPG 51 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHH--TTCEEEEC---BCCCCTT------S-------C-----------------CTT
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEE---eCcCCCc------c-------c-----------------ChH
Confidence 6899999999999999999888883 45554443 3332111 0 0 112
Q ss_pred HHHHHHHHHHHhccccccCCcc-------ccCChhhHHHHHHHHHHHHHcCCeeeec
Q psy944 323 KGDRIYEQMKLMGSSLDWDRAC-------FTMDPKLSRAVTEAFVILHEAGDIYRSE 372 (689)
Q Consensus 323 ~~~~~~~~l~~lGi~~Dw~~~~-------~T~d~~~~~~v~~~f~~L~~kGliy~~~ 372 (689)
+.+.|.++|+.||+. |+... -....++...-+....+|.++|++|.-.
T Consensus 52 ~~~~I~~dl~wlGl~--wd~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~c~ 106 (468)
T 1j09_A 52 AEERILAALKWLGLS--YDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAF 106 (468)
T ss_dssp HHHHHHHHHHHTTCC--CSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHcCCC--CCCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEEcC
Confidence 457788999999976 54531 0223456678888999999999999643
No 66
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=96.92 E-value=0.0021 Score=71.03 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=64.8
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Q psy944 243 PPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKE 322 (689)
Q Consensus 243 pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (689)
+|.|||.||+||+++.++.-.+|| ...|.-+++.==+|. + + ....
T Consensus 12 APsPTG~LHiG~~rtAL~n~l~Ar--~~gG~fiLRieDtD~---~------R------------------------~~~~ 56 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYAR--HTGGTFVFRIEDTDA---Q------R------------------------DSEE 56 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHH--HHTCEEEECBCCCCT---T------T------------------------CCHH
T ss_pred CcCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECcCCC---c------c------------------------cChH
Confidence 589999999999999999999998 346655554433332 1 0 0123
Q ss_pred HHHHHHHHHHHhccccccCC---------ccccCChhhHHHHHHHHHHHHHcCCeeee
Q psy944 323 KGDRIYEQMKLMGSSLDWDR---------ACFTMDPKLSRAVTEAFVILHEAGDIYRS 371 (689)
Q Consensus 323 ~~~~~~~~l~~lGi~~Dw~~---------~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 371 (689)
+.+.|.++|+.+|+..| . .|+. .++...-+.+..+|.++|++|.-
T Consensus 57 ~~~~I~~~L~wlGl~wD--egp~~gG~~~~~~Q--S~r~~~y~~~~~~L~~~g~aY~c 110 (498)
T 2ja2_A 57 SYLALLDALRWLGLDWD--EGPEVGGPYGPYRQ--SQRAEIYRDVLARLLAAGEAYHA 110 (498)
T ss_dssp HHHHHHHHHHHHTCCCS--BBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCcC--CCcCcCCCCCCeee--ecCHHHHHHHHHHHHHcCCeEEe
Confidence 45778899999997555 4 3433 45667788899999999999963
No 67
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=94.11 E-value=0.023 Score=59.44 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=33.7
Q ss_pred EEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc
Q psy944 134 VFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 134 v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
++.+.++.+.+|+|||||.||.|.+.+ .+|.+|..++++
T Consensus 201 ~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 201 CLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp EEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred EEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 566789989999999999999998876 489999988864
No 68
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=93.03 E-value=0.045 Score=60.40 Aligned_cols=44 Identities=25% Similarity=0.334 Sum_probs=37.4
Q ss_pred EEEc-ceeeCCCCceeeeccCCccCchhhhh-cCChhhHHHHHhhcC
Q psy944 134 VFLH-PIVRDAHGRKMSKSLGNVIDPLDVVK-GISLAGLQGRLLQDS 178 (689)
Q Consensus 134 v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~-~~~~d~~r~~l~~~~ 178 (689)
.+.| +++++.+|+|||||.||+ .+.++.+ +|.++++|.||+.-+
T Consensus 233 ~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG 278 (492)
T 2cfo_A 233 NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLG 278 (492)
T ss_dssp EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTT
T ss_pred eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhC
Confidence 5666 787899999999999998 6788886 599999999998643
No 69
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=90.91 E-value=0.11 Score=54.63 Aligned_cols=42 Identities=33% Similarity=0.420 Sum_probs=33.8
Q ss_pred CceEEE-cceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc
Q psy944 131 HSEVFL-HPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 131 ~k~v~~-hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
|..++. +.+++..+|+|||||.+|.|.+.+ +++.++-++.+.
T Consensus 188 P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~~Ki~~a 230 (340)
T 2g36_A 188 PEAILSRVPKLPGTDGRKMSKSYGNIINLEI-----SEKELEQTILRM 230 (340)
T ss_dssp CEEEECCSCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHHHHHHTC
T ss_pred chhhhccccccCCCCccccCCCCCCeEeeeC-----CHHHHHHHHHhC
Confidence 455555 578888899999999999998777 788888887753
No 70
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=90.50 E-value=0.1 Score=54.38 Aligned_cols=41 Identities=29% Similarity=0.290 Sum_probs=31.6
Q ss_pred CceEE--EcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhh
Q psy944 131 HSEVF--LHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 131 ~k~v~--~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
|+.++ .+.+++..+|+|||||.+|.|.+.+ +++.++-.+.+
T Consensus 174 P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d-----~p~~i~~KI~~ 216 (322)
T 3tzl_A 174 PEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS-----SEKTLKKQISS 216 (322)
T ss_dssp CEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC-----CHHHHHHHHHT
T ss_pred chhhhccccccccCCCCCcCCCCCCCceecCC-----CHHHHHHHHHh
Confidence 45555 3678888999999999999987765 57777766664
No 71
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=90.41 E-value=0.13 Score=53.71 Aligned_cols=42 Identities=19% Similarity=0.134 Sum_probs=33.7
Q ss_pred eEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhh
Q psy944 133 EVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 133 ~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
-.+.+.++...+|+|||||.+|.|.+.+ ++.+++.++-++.+
T Consensus 221 ~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 221 FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWIN 262 (322)
T ss_dssp EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHT
T ss_pred eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhC
Confidence 4456778887899999999999998887 56778888777664
No 72
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.39 E-value=0.14 Score=56.90 Aligned_cols=43 Identities=9% Similarity=0.017 Sum_probs=27.8
Q ss_pred EcceeeCCCCceeeeccCC---------------ccCchhhhhc-CChhhHHHHHhhcC
Q psy944 136 LHPIVRDAHGRKMSKSLGN---------------VIDPLDVVKG-ISLAGLQGRLLQDS 178 (689)
Q Consensus 136 ~hg~~~~~~g~KmSKS~gn---------------~~~~~~~~~~-~~~d~~r~~l~~~~ 178 (689)
.|--.++.+|+|||||+|| ..++.++.++ |.++++|.||+..+
T Consensus 318 ~H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G 376 (553)
T 3aii_A 318 IHYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIG 376 (553)
T ss_dssp ECCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHT
T ss_pred EEeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 4644445799999999998 5677888876 99999999999654
No 73
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=88.05 E-value=0.2 Score=52.95 Aligned_cols=43 Identities=21% Similarity=0.187 Sum_probs=21.1
Q ss_pred eEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc
Q psy944 133 EVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 133 ~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
-++.+.++...+|+|||||.||.|.+.+ +.-+++.++-++.+.
T Consensus 240 ~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~~ 282 (356)
T 2pid_A 240 FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVRQ 282 (356)
T ss_dssp EEEEECCCC-------------CCBSST--TTSCHHHHHHHHHTC
T ss_pred cccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHcC
Confidence 4556788888899999999999998776 346777777777753
No 74
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=87.36 E-value=0.32 Score=52.62 Aligned_cols=42 Identities=33% Similarity=0.466 Sum_probs=34.4
Q ss_pred CceEEEcceeeCCCCc-eeeeccCCccCchhhhhcCChhhHHHHHhhc
Q psy944 131 HSEVFLHPIVRDAHGR-KMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 131 ~k~v~~hg~~~~~~g~-KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
+..++.+.++...+|. |||||.||.|.+.+ +++.++-++.+.
T Consensus 215 ~~~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 215 PQVCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp CCEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CceEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 4566678888889996 99999999998877 788888777753
No 75
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=87.22 E-value=0.15 Score=56.54 Aligned_cols=46 Identities=11% Similarity=-0.058 Sum_probs=36.4
Q ss_pred CceEEEcceeeCCCCceeeeccCC---------------ccCchhhhhc-CChhhHHHHHhhcC
Q psy944 131 HSEVFLHPIVRDAHGRKMSKSLGN---------------VIDPLDVVKG-ISLAGLQGRLLQDS 178 (689)
Q Consensus 131 ~k~v~~hg~~~~~~g~KmSKS~gn---------------~~~~~~~~~~-~~~d~~r~~l~~~~ 178 (689)
|+.. -+|++ +.+|.|||||+|| ..++.++.++ |.+++||.||+..+
T Consensus 253 P~~~-~f~hL-n~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG 314 (553)
T 1qtq_A 253 PRQY-EFSRL-NLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIG 314 (553)
T ss_dssp CEEE-EECCC-CBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHC
T ss_pred CCeE-EEEee-cCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcC
Confidence 4444 56766 5899999999987 5677888865 99999999998653
No 76
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=87.20 E-value=0.3 Score=52.16 Aligned_cols=42 Identities=29% Similarity=0.341 Sum_probs=30.9
Q ss_pred eEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhh
Q psy944 133 EVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 133 ~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
-.+.+.++...+|+|||||.||.|.+.+-. -+++.++-++++
T Consensus 279 ~~l~~pll~~ldG~KMSKS~~naI~L~d~~--tsp~~i~qki~~ 320 (392)
T 1y42_X 279 VGFTVPLLTDSSGAKFGKSAGNAIWLDPYQ--TSVFDFYGYFVR 320 (392)
T ss_dssp EEEECCCCBCTTCCBTTBCSSSBCBSSTTT--SCHHHHHHHHHT
T ss_pred cccccccCcCCchhhccCCCCCeeeccCCC--CCHHHHHHHHHc
Confidence 445678888899999999999999877622 455555555554
No 77
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=86.68 E-value=0.35 Score=53.19 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=35.8
Q ss_pred EEc-ceeeCCCCceeeeccCCccCchhhhh-cCChhhHHHHHhhc
Q psy944 135 FLH-PIVRDAHGRKMSKSLGNVIDPLDVVK-GISLAGLQGRLLQD 177 (689)
Q Consensus 135 ~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~-~~~~d~~r~~l~~~ 177 (689)
+.| +++++.+|+||||+.|++ .+.++++ +|-+++++.|+..-
T Consensus 249 ~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~l 292 (481)
T 2o5r_A 249 FAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLALL 292 (481)
T ss_dssp EEEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTS
T ss_pred EEEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHh
Confidence 555 777889999999999999 7888887 58999999998853
No 78
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=85.18 E-value=0.62 Score=44.75 Aligned_cols=40 Identities=23% Similarity=0.283 Sum_probs=33.7
Q ss_pred ceeeeEeEEeecCCceEEEEeccHHHHhhcccccccCccc
Q psy944 481 GVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDE 520 (689)
Q Consensus 481 ~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~ 520 (689)
|....+.|++.+.+..+.|+|+||+++++.++++++|++.
T Consensus 10 ~~g~~v~F~~~~~~~~l~i~TTrP~TL~g~~avav~P~~~ 49 (196)
T 2ajg_A 10 GEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHP 49 (196)
T ss_dssp -CEEEEEEEBTTCSSEEEEEESCGGGGGGCCEEEECTTSH
T ss_pred CceEEEEEEeCCCCcEEEEEECChhhhcCccEEEECCCCc
Confidence 3456778888766788999999999999999999999875
No 79
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=84.21 E-value=0.44 Score=51.45 Aligned_cols=44 Identities=20% Similarity=0.165 Sum_probs=33.4
Q ss_pred ceEEEcceeeCCCCceeeeccCC-ccCchhhhhcCChhhHHHHHhhc
Q psy944 132 SEVFLHPIVRDAHGRKMSKSLGN-VIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 132 k~v~~hg~~~~~~g~KmSKS~gn-~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
--.+.+.++...+|+|||||.|| .|.+.+ +..+++.++-++++.
T Consensus 216 ~~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~~ 260 (432)
T 2jan_A 216 VHALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVNT 260 (432)
T ss_dssp CEEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHTC
T ss_pred ccccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhcC
Confidence 34556788888899999999999 888765 245677777777654
No 80
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=84.18 E-value=0.41 Score=52.39 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=35.4
Q ss_pred EEEc-ceeeCCCCceeeeccCCccCchhhhh-cCChhhHHHHHhhc
Q psy944 134 VFLH-PIVRDAHGRKMSKSLGNVIDPLDVVK-GISLAGLQGRLLQD 177 (689)
Q Consensus 134 v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~-~~~~d~~r~~l~~~ 177 (689)
.+.| +++++.+|+||||+.||. .+.++.+ +|-++++|-||..-
T Consensus 229 ~~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~l 273 (468)
T 1j09_A 229 RFYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLM 273 (468)
T ss_dssp EEEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHH
T ss_pred eEEEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHh
Confidence 3445 777889999999999999 6777776 48999999998754
No 81
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=84.06 E-value=0.62 Score=48.38 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=25.9
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccC
Q psy944 245 NVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGI 286 (689)
Q Consensus 245 ~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Gl 286 (689)
-|||.||+||.++.+.. +.++++ |+++.+..| |.|++
T Consensus 11 ~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~ 47 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAM 47 (322)
T ss_dssp CCSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHT
T ss_pred CCCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeee
Confidence 57899999998875543 556665 888876665 44544
No 82
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=83.88 E-value=0.54 Score=51.65 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=36.1
Q ss_pred EEEc-ceeeCCCCceeeeccCCccCchhhhh-cCChhhHHHHHhhc
Q psy944 134 VFLH-PIVRDAHGRKMSKSLGNVIDPLDVVK-GISLAGLQGRLLQD 177 (689)
Q Consensus 134 v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~-~~~~d~~r~~l~~~ 177 (689)
.+.| .++++.+|+||||+.|++ .+.++.+ +|-+++++.||..-
T Consensus 241 ~f~H~pli~~~~g~KLSKR~g~~-~l~~~r~~G~~peal~n~l~~l 285 (488)
T 3afh_A 241 VFMHIPLILGSDRTPLSKRHGAT-SVEHFRREGILSRALMNYLALL 285 (488)
T ss_dssp EEEEECCEECTTSSBCCTTTSCC-BHHHHHHHTCCHHHHHHHHHHT
T ss_pred eEEEEeeeeCCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHh
Confidence 4555 788899999999999994 7788877 59999999999864
No 83
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=83.73 E-value=0.35 Score=52.17 Aligned_cols=43 Identities=16% Similarity=0.085 Sum_probs=32.1
Q ss_pred ceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhh
Q psy944 132 SEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 132 k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
--.+.+.++...+|+|||||.||.|.+.+- ..+++.++-++++
T Consensus 216 ~~~l~~pll~~ldG~KMSKS~~naI~L~d~--~tsp~~i~~ki~~ 258 (420)
T 1jil_A 216 AYGLTIPLVTKSDGKKFGKSESGAVWLDAE--KTSPYEFYQFWIN 258 (420)
T ss_dssp CEEEEECCCBCTTSCBTTBCSSSBCBSSTT--TSCHHHHHHHHHT
T ss_pred eeEeecccccCCccccccCCCCCeEecCCC--CCCHHHHHHHHhc
Confidence 345567888888999999999999987652 3566666666664
No 84
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=83.63 E-value=0.33 Score=52.33 Aligned_cols=42 Identities=19% Similarity=0.064 Sum_probs=31.7
Q ss_pred eEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhh
Q psy944 133 EVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 133 ~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
-.+.+.++...+|+|||||.||.|.+.+- ..+++.++-++++
T Consensus 216 ~~lt~pll~~ldG~KMSKS~~naI~L~d~--~tsp~~i~qki~~ 257 (419)
T 2ts1_A 216 FGLTIPLVTKADGTKFGKTESGTIWLDKE--KTSPYEFYQFWIN 257 (419)
T ss_dssp EEEEECCCCCTTSCCTTCCSSCCCBSSTT--TSCHHHHHHHHHT
T ss_pred eecccccccCCCcccccCCCCCeEecCCC--CCCHHHHHHHHhc
Confidence 45567888888999999999999987652 3566666666664
No 85
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=83.63 E-value=0.48 Score=49.89 Aligned_cols=41 Identities=29% Similarity=0.358 Sum_probs=30.8
Q ss_pred CceEEE-cceeeCCCCc-eeeeccCCccCchhhhhcCChhhHHHHHhh
Q psy944 131 HSEVFL-HPIVRDAHGR-KMSKSLGNVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 131 ~k~v~~-hg~~~~~~g~-KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
|..++. +.++++.+|+ |||||.+|.|.+.+= ++.++-++.+
T Consensus 197 P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~-----p~~i~~Ki~~ 239 (351)
T 1yi8_B 197 PQAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS-----ADEVARKVMG 239 (351)
T ss_dssp CEEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC-----HHHHHHHHHT
T ss_pred CeeeeecCccccCCCCccccCCCCCCeecCCCC-----HHHHHHHHHh
Confidence 455564 5788888997 999999998876543 7777777765
No 86
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=82.62 E-value=0.57 Score=52.78 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=35.5
Q ss_pred EEc-ceeeCCCCceeeeccCCccCchhhhh-cCChhhHHHHHhhcC
Q psy944 135 FLH-PIVRDAHGRKMSKSLGNVIDPLDVVK-GISLAGLQGRLLQDS 178 (689)
Q Consensus 135 ~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~-~~~~d~~r~~l~~~~ 178 (689)
+.| +++++.+|+||||+.|+ +.+.++.+ +|-++++|.||..-+
T Consensus 346 ~~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG 390 (592)
T 3al0_C 346 FMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLG 390 (592)
T ss_dssp CCEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTT
T ss_pred EEEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 344 67788999999999999 57888877 599999999998643
No 87
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=82.49 E-value=0.49 Score=49.50 Aligned_cols=35 Identities=37% Similarity=0.473 Sum_probs=28.1
Q ss_pred ceeeCCCC-ceeeeccCCccCchhhhhcCChhhHHHHHhhc
Q psy944 138 PIVRDAHG-RKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 138 g~~~~~~g-~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
.+++..+| +|||||.+|.|.+.+ .++.++-++.+.
T Consensus 185 p~l~gldG~~KMSKS~~n~I~L~d-----~p~~i~~Ki~~a 220 (337)
T 2el7_A 185 PRVPGIDGKAKMSKSLGNTIGLLE-----PEESIWQKIQHL 220 (337)
T ss_dssp CCCBCTTSSSBCCTTTTCCCBSSS-----CHHHHHHHHHTC
T ss_pred ccccCCCCccccCCCCCCeeeCcC-----CHHHHHHHHHhC
Confidence 58888899 999999999887765 377777777753
No 88
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=81.21 E-value=0.45 Score=50.51 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=21.0
Q ss_pred eEEEcceeeCCCCceeeeccCC-ccCchhhhhcCChhhHHHHHhh
Q psy944 133 EVFLHPIVRDAHGRKMSKSLGN-VIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 133 ~v~~hg~~~~~~g~KmSKS~gn-~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
..+.+.++...+|+|||||.+| .|.+.+= ++.++-++.+
T Consensus 208 ~~l~~pll~gldG~KMSKS~~ns~I~L~d~-----p~~i~kKi~~ 247 (372)
T 1n3l_A 208 VHLMNPMVPGLTGSKMSSSEEESKIDLLDR-----KEDVKKKLKK 247 (372)
T ss_dssp EEEEECCCCCSSCC-------CCSCBTTCC-----HHHHHHHHHT
T ss_pred EEEecCccCCCCcccccCCCCCCeEeccCC-----HHHHHHHHHH
Confidence 3445788888899999999999 6765432 6666655553
No 89
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=80.19 E-value=0.57 Score=48.54 Aligned_cols=28 Identities=36% Similarity=0.461 Sum_probs=22.1
Q ss_pred eEEEcceeeCCCC-ceeeeccCCccCchh
Q psy944 133 EVFLHPIVRDAHG-RKMSKSLGNVIDPLD 160 (689)
Q Consensus 133 ~v~~hg~~~~~~g-~KmSKS~gn~~~~~~ 160 (689)
.++.+.+++..+| +|||||.||.|.+.+
T Consensus 189 ~~~~~~~l~~l~G~~KMSKS~~~~I~L~d 217 (314)
T 2zp1_A 189 VCIHNPVLTGLDGEGKMSSSKGNFIAVDD 217 (314)
T ss_dssp EEEEECCCBCTTSSSBCCTTTTCSCBTTC
T ss_pred EEeeccccccCCcccccCCCCcceecCCC
Confidence 3445678888899 799999999887654
No 90
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=79.66 E-value=0.58 Score=54.46 Aligned_cols=42 Identities=7% Similarity=-0.229 Sum_probs=33.9
Q ss_pred EcceeeCCCCceeeeccCC---------------ccCchhhhhc-CChhhHHHHHhhcC
Q psy944 136 LHPIVRDAHGRKMSKSLGN---------------VIDPLDVVKG-ISLAGLQGRLLQDS 178 (689)
Q Consensus 136 ~hg~~~~~~g~KmSKS~gn---------------~~~~~~~~~~-~~~d~~r~~l~~~~ 178 (689)
-+|++. .+|.|||||+|| ..++.++.++ |.+++||.|++..+
T Consensus 297 ~fahLn-~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG 354 (851)
T 2hz7_A 297 EFGRRG-LEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIG 354 (851)
T ss_dssp EECCEE-ETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSC
T ss_pred EEEEec-CCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcC
Confidence 556664 799999999987 4567788865 99999999998654
No 91
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=79.60 E-value=1.1 Score=49.34 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=35.5
Q ss_pred EEEc-ceeeCCCCceeeeccCCccCchhhhh-cCChhhHHHHHhhc
Q psy944 134 VFLH-PIVRDAHGRKMSKSLGNVIDPLDVVK-GISLAGLQGRLLQD 177 (689)
Q Consensus 134 v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~-~~~~d~~r~~l~~~ 177 (689)
.+.| .++++.+|+||||+.|++ ++.++.+ +|.++++|.|+..-
T Consensus 243 ~~~h~plil~~~g~KLSKR~g~~-~l~~~r~~G~~peAl~~~l~~l 287 (498)
T 2ja2_A 243 KFAHLPTVLGEGTKKLSKRDPQS-NLFAHRDRGFIPEGLLNYLALL 287 (498)
T ss_dssp EEEEECCEECSSSSBCCTTSGGG-BHHHHHHHTCCHHHHHHHHHTS
T ss_pred eEEEeeeeECCCCCcccccCCcc-cHHHHHhCCCCHHHHHHHHHHh
Confidence 3444 788899999999999995 6777777 59999999999864
No 92
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=78.93 E-value=0.61 Score=52.77 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.9
Q ss_pred eeeeccCCccCchhhhhcCChhh
Q psy944 147 KMSKSLGNVIDPLDVVKGISLAG 169 (689)
Q Consensus 147 KmSKS~gn~~~~~~~~~~~~~d~ 169 (689)
|||||+||+|++++++++++.++
T Consensus 407 kMSkR~G~~v~L~dLlde~~~~a 429 (607)
T 1f7u_A 407 GMSTRKGTVVFLDNILEETKEKM 429 (607)
T ss_dssp SCCGGGTCCCBHHHHHHHHHHHH
T ss_pred cccCCCCCcccHHHHHHHHHHHH
Confidence 79999999999999999987755
No 93
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=78.63 E-value=4.2 Score=42.08 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=24.9
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
++.+..|. -|||.||+||. ..+. .+.+++. .|+++.+..|
T Consensus 32 ~~~vy~G~-~PTg~lHlG~l-~~l~--~~~~lq~-~g~~~~~~i~ 71 (323)
T 2cyb_A 32 KPRAYVGY-EPSGEIHLGHM-MTVQ--KLMDLQE-AGFEIIVLLA 71 (323)
T ss_dssp CCEEEEEE-CCCSCCBHHHH-HHHH--HHHHHHH-TTCEEEEEEC
T ss_pred CCEEEECc-CCCCcchHHHH-HHHH--HHHHHHH-CCCcEEEEEC
Confidence 45566665 58899999995 3222 3444443 4888766554
No 94
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=77.29 E-value=2 Score=45.71 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=29.0
Q ss_pred CCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
++++.+..|. -|||.+|+||...... ..+++...|+++.+..|
T Consensus 71 ~~p~~i~sG~-~PTG~lHLGh~v~~~~---~~~lQ~~~g~~~~i~Ia 113 (392)
T 3jxe_A 71 GRGFFLYTGR-GPSGPMHIGHIIPFFA---TKWLQEKFGVNLYIQIT 113 (392)
T ss_dssp TCCCEEEEEE-CCSSCCBHHHHHHHHH---HHHHHHHHCCEEEEEEC
T ss_pred CCCeEEEecc-CCCCchhHHHHHHHHH---HHHHHHhcCCceEEEec
Confidence 4566677776 3679999999886642 12244446888877766
No 95
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=76.72 E-value=1.9 Score=44.78 Aligned_cols=32 Identities=6% Similarity=0.120 Sum_probs=21.5
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 245 NVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 245 ~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
-|||.||+||.++.+. -+.+++. |+++.+..|
T Consensus 9 ~PTG~lHlGn~vg~l~--~~~~lQ~--g~~~~~~Ia 40 (328)
T 1i6k_A 9 QPSGVITIGNYIGALR--QFVELQH--EYNCYFCIV 40 (328)
T ss_dssp CCCSCCBHHHHHHTHH--HHHHHTT--TSEEEEEEC
T ss_pred CCCCcccHHHHHHHHH--HHHHHHc--CCcEEEEEe
Confidence 4679999999887662 2224443 888866555
No 96
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=75.79 E-value=1.9 Score=40.86 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=30.3
Q ss_pred eeEeEEeecC------CceEEEEeccHHHHhhcccccccCccc
Q psy944 484 ASFAYKLEDG------SGEIVVATTRLETLFADVAVAVHPEDE 520 (689)
Q Consensus 484 ~~~~y~~~~~------~~~~~i~~~~~e~~~~~~~~~~~~~~~ 520 (689)
.++.|++.+. +..+.|+|+||+++++.+++.++|++.
T Consensus 6 i~V~F~~~~~~~~~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~ 48 (186)
T 1wny_A 6 VYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYT 48 (186)
T ss_dssp EEEEEEBSCGGGGTCSSEEEEEEESCGGGGGGCCEEEECTTSE
T ss_pred EEEEEEeCCCccccCCCcEEEEEECCcchhhcceEEEECCCCc
Confidence 3556777543 568999999999999999999999854
No 97
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=75.64 E-value=4 Score=43.50 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=26.7
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
+++.+..|. -|||.||+||.++... +.++++ .|+++.+..|
T Consensus 38 ~p~~vy~G~-~PTG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~ 78 (394)
T 2dlc_X 38 RHLKLYWGT-APTGRPHCGYFVPMTK---LADFLK-AGCEVTVLLA 78 (394)
T ss_dssp SCCEEEEEE-CCCSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CCeEEEEEe-CCCCCccHHHHHHHHH---HHHHHH-cCCcEEEEEc
Confidence 455555554 4589999999876654 334444 6888766555
No 98
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=74.64 E-value=0.81 Score=48.07 Aligned_cols=30 Identities=37% Similarity=0.176 Sum_probs=22.4
Q ss_pred CceEEE--cceeeCCCC--ceeeeccCC---ccCchh
Q psy944 131 HSEVFL--HPIVRDAHG--RKMSKSLGN---VIDPLD 160 (689)
Q Consensus 131 ~k~v~~--hg~~~~~~g--~KmSKS~gn---~~~~~~ 160 (689)
|..++. +..+.+.+| +|||||.+| .|.+.+
T Consensus 182 P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D 218 (348)
T 2yy5_A 182 PQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD 218 (348)
T ss_dssp CEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC
T ss_pred CeeecccccccccCCCCcchhcCCCCCCCCceEeecC
Confidence 445544 578888888 999999999 776543
No 99
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=73.97 E-value=0.99 Score=48.24 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=18.5
Q ss_pred eEEEcceeeCCC-CceeeeccCCc-cCchhhhhcCChhhHHHHHhh
Q psy944 133 EVFLHPIVRDAH-GRKMSKSLGNV-IDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 133 ~v~~hg~~~~~~-g~KmSKS~gn~-~~~~~~~~~~~~d~~r~~l~~ 176 (689)
..+.|.++.+.+ |+|||||.+|. |.+.+ .++.++-.+.+
T Consensus 212 ~~l~~pll~gl~~G~KMSKS~~ns~I~L~D-----~p~~i~kKI~k 252 (394)
T 2dlc_X 212 AHLMNPMVPGLAQGGKMSASDPNSKIDLLE-----EPKQVKKKINS 252 (394)
T ss_dssp EEEEECCCCCCC----------CCSCBTTC-----CHHHHHHHHHH
T ss_pred EEEecccccCCCCCCcCCCCCCCCEEeccC-----CHHHHHHHHHH
Confidence 444568888889 99999999996 76544 25555555543
No 100
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=73.12 E-value=1 Score=46.91 Aligned_cols=30 Identities=30% Similarity=0.170 Sum_probs=22.1
Q ss_pred cCceEEE--cceeeCCCC--ceeeeccCC-c--cCch
Q psy944 130 IHSEVFL--HPIVRDAHG--RKMSKSLGN-V--IDPL 159 (689)
Q Consensus 130 ~~k~v~~--hg~~~~~~g--~KmSKS~gn-~--~~~~ 159 (689)
.|..++. +.+++..+| +|||||.+| . |.+.
T Consensus 171 ~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~ 207 (328)
T 1i6k_A 171 IPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLL 207 (328)
T ss_dssp CCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTT
T ss_pred CCeeeeccccccccCCCCCccCCCCCCCCcCceeeec
Confidence 3555553 578888888 999999999 5 6543
No 101
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=72.43 E-value=0.99 Score=48.15 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=18.1
Q ss_pred eEEEcceeeCCCC--ceeeeccCCccCchhhhhcCChhhHHHHHhh
Q psy944 133 EVFLHPIVRDAHG--RKMSKSLGNVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 133 ~v~~hg~~~~~~g--~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
.++.+.++...+| .|||||.+|.|.+.+ .++.++-.+.+
T Consensus 254 ~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D-----~p~~i~kKI~k 294 (395)
T 3i05_A 254 AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD-----TEKMVKDKINK 294 (395)
T ss_dssp EEEEECCCCCC-------------CCBTTC-----CHHHHHHHHC-
T ss_pred eeeccccccCCCCCcccCCCCCCCcccCCC-----CHHHHHHHHHh
Confidence 4456788888899 799999999997665 55666655543
No 102
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=71.73 E-value=1.1 Score=48.28 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=16.3
Q ss_pred eEEEcceeeCCCC--ceeeeccCC-ccCchh
Q psy944 133 EVFLHPIVRDAHG--RKMSKSLGN-VIDPLD 160 (689)
Q Consensus 133 ~v~~hg~~~~~~g--~KmSKS~gn-~~~~~~ 160 (689)
.++.+.++...+| +|||||.+| .|.+.+
T Consensus 279 ~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 279 ALLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp EEEEECCCCCTTC--------CGGGCCBTTC
T ss_pred eeeccccccCCCCCccccCCCCCCCeEeccC
Confidence 3466788888999 999999999 676443
No 103
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=71.31 E-value=1.2 Score=48.23 Aligned_cols=27 Identities=26% Similarity=0.159 Sum_probs=21.9
Q ss_pred eEEEcceeeCCCC--ceeeeccCC-ccCch
Q psy944 133 EVFLHPIVRDAHG--RKMSKSLGN-VIDPL 159 (689)
Q Consensus 133 ~v~~hg~~~~~~g--~KmSKS~gn-~~~~~ 159 (689)
.++.+.+++..+| .|||||.+| .|.+.
T Consensus 286 ~~l~~pll~gLdG~~~KMSKS~~nsaI~L~ 315 (437)
T 1r6u_A 286 ALLHSTFFPALQGAQTKMSASDPNSSIFLT 315 (437)
T ss_dssp EEEEECCCEETTEEEEECCTTSSSSCCBTT
T ss_pred eEeecccccCCCCCccccCCCCCCCeeecc
Confidence 3467788888999 899999999 77654
No 104
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=70.99 E-value=1.4 Score=46.81 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=29.7
Q ss_pred eEEEcceeeCCCCc-eeeec-cCCccCchhhhhcCChhhHHHHHhh
Q psy944 133 EVFLHPIVRDAHGR-KMSKS-LGNVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 133 ~v~~hg~~~~~~g~-KmSKS-~gn~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
.++.+.++...+|. ||||| .+|.|.+.| .++.++-.+.+
T Consensus 254 ~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D-----~p~~i~kKI~k 294 (386)
T 3hzr_A 254 TVLFHKMVPLLSGVTKFDIPSDHNSILLSD-----NAKQVERKINK 294 (386)
T ss_dssp EEEEECCCCCTTCTTCCCCCCTTTSCBTTC-----CHHHHHHHHHH
T ss_pred eEeecCeeeCCCCCCccCcCCCCCeeecCC-----CHHHHHHHHHH
Confidence 55677888888995 99999 799997655 56666666654
No 105
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=70.83 E-value=2.9 Score=44.11 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=25.0
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
++.+..|. -|||.||+|| +..+. .+.+++. .|+++.+..|
T Consensus 35 ~~~iy~G~-~PTg~lHlG~-l~~l~--~~~~lQ~-~G~~~~~~ia 74 (364)
T 2cya_A 35 RIKGYIGY-EPSGVAHIGW-LVWMY--KVKDLVE-AGVDFSVLEA 74 (364)
T ss_dssp CCEEEEEE-CCCSSCBTHH-HHHHH--HHHHHHH-TTCEEEEEEC
T ss_pred CCEEEecc-CCCCCccHhH-HHHHH--HHHHHHH-CCCCEEEEEe
Confidence 44455554 5689999999 54432 2344443 4888876666
No 106
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=70.30 E-value=3.5 Score=37.51 Aligned_cols=35 Identities=51% Similarity=0.801 Sum_probs=29.8
Q ss_pred eeeeEeEEeecCCceEEEEeccHHHHhhcccccccC
Q psy944 482 VLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHP 517 (689)
Q Consensus 482 ~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~~~ 517 (689)
.+.++.|++ +++..+.|+|+||+++++.++++++|
T Consensus 5 ~~~~v~F~~-~~~~~l~i~TTrP~Tl~g~~aiav~P 39 (147)
T 1wka_A 5 KLYTLRYEV-EGGGFIEIATVRPETVFADQAIAVHP 39 (147)
T ss_dssp EEEEEEEEB-TTSCEEEEEESCGGGGGGCCEEEECT
T ss_pred eEEEEEEEC-CCCcEEEEEECCceecccceEEEECC
Confidence 456778888 55678999999999999999998875
No 107
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=69.34 E-value=1.4 Score=46.98 Aligned_cols=26 Identities=23% Similarity=0.118 Sum_probs=20.2
Q ss_pred eEEEcceeeCCCC--ceeeeccCC-ccCc
Q psy944 133 EVFLHPIVRDAHG--RKMSKSLGN-VIDP 158 (689)
Q Consensus 133 ~v~~hg~~~~~~g--~KmSKS~gn-~~~~ 158 (689)
.++.+.++...+| +|||||.+| .|.+
T Consensus 237 ~~l~~~~l~gLdG~~~KMSKS~~ns~I~L 265 (392)
T 3jxe_A 237 AALHSKFVPSLTSLSGKMSASKPETAIYL 265 (392)
T ss_dssp EEEEECCCCCSSCSSSCCCTTSGGGCCBT
T ss_pred eeeecccccCCCCCccccccCCCCCeeeC
Confidence 3456788888888 599999988 6653
No 108
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=69.05 E-value=1.3 Score=47.23 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=10.1
Q ss_pred eEEEcceeeCCCC--ceeeeccCC-ccCc
Q psy944 133 EVFLHPIVRDAHG--RKMSKSLGN-VIDP 158 (689)
Q Consensus 133 ~v~~hg~~~~~~g--~KmSKS~gn-~~~~ 158 (689)
.++.+.++...+| .|||||.+| .|.+
T Consensus 250 ~~l~~~~l~gLdG~~~KMSKS~~nsaI~L 278 (393)
T 3hv0_A 250 SSIHSIFLPSLQGSQTKMSASVQNSSIFV 278 (393)
T ss_dssp EEEEECCCCC-------------CCCCBT
T ss_pred eeeccCcccCCCCCCcCCCCCCCCCeEec
Confidence 4556788888899 799999987 6653
No 109
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=67.15 E-value=1.9 Score=45.73 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=19.8
Q ss_pred eEEEcceeeCC-CC-ceeeecc-CCccCc
Q psy944 133 EVFLHPIVRDA-HG-RKMSKSL-GNVIDP 158 (689)
Q Consensus 133 ~v~~hg~~~~~-~g-~KmSKS~-gn~~~~ 158 (689)
.++.+.++... +| +|||||. +|.|.+
T Consensus 231 ~~l~~p~l~gL~dG~~KMSKS~~~~~I~L 259 (373)
T 3vgj_A 231 VILSHGMLPGLLEGQEKMSKSDENSAIFM 259 (373)
T ss_dssp EEEEBCCCCCSSTTCCSCCSSSTTCCCBT
T ss_pred eEEeCCeeecCCCCCCCCcCCCCCCeeec
Confidence 35677888875 88 4999999 577764
No 110
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=66.99 E-value=1.6 Score=47.72 Aligned_cols=26 Identities=27% Similarity=0.165 Sum_probs=21.3
Q ss_pred EEEcceeeCCCC--ceeeeccCC-ccCch
Q psy944 134 VFLHPIVRDAHG--RKMSKSLGN-VIDPL 159 (689)
Q Consensus 134 v~~hg~~~~~~g--~KmSKS~gn-~~~~~ 159 (689)
++.+.+++..+| .|||||.+| .|.+.
T Consensus 334 ~l~~pll~gLdG~~~KMSKS~~nsaI~L~ 362 (477)
T 1r6t_A 334 LLHSTFFPALQGAQTKMSASDPNSSIFLT 362 (477)
T ss_dssp EEEECCCEETTEEEEECCTTSTTCCCBTT
T ss_pred eeecccccCCCCCccccCCCCCCCceeec
Confidence 466788888999 899999999 67644
No 111
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=65.75 E-value=3.2 Score=43.95 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=26.2
Q ss_pred eeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 237 FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 237 f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
..+..|.- |||.||+||.++... +.++++ .|+++.+..|
T Consensus 36 ~~vy~G~~-PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 36 LKIYWGTA-TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp CEEEEEEC-CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CEEEeCcC-CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 34555554 889999999876655 444444 6888766555
No 112
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=65.22 E-value=2.7 Score=43.93 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=22.4
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccccc
Q psy944 245 NVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAG 285 (689)
Q Consensus 245 ~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~G 285 (689)
-|||.+|+||..+.+. -+.+++. ++++.+..+ |.|+
T Consensus 14 ~PTG~lHLGhy~g~l~--~~~~lQ~--~~~~~~~ia-D~ha 49 (341)
T 3sz3_A 14 QPSGELSIGNYLGALR--QWQQMQD--DYDCQYCVV-DLHA 49 (341)
T ss_dssp CSSSCCBHHHHHHTGG--GHHHHHH--HSEEEEEEC-HHHH
T ss_pred CCCCcccHHHHHHHHH--HHHHHHh--cCeEEEEEe-ccee
Confidence 5789999999887552 2334444 477665544 4443
No 113
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=63.82 E-value=2.1 Score=45.76 Aligned_cols=27 Identities=30% Similarity=0.254 Sum_probs=20.8
Q ss_pred eEEEcceeeCCCC--ceeeecc-CCccCch
Q psy944 133 EVFLHPIVRDAHG--RKMSKSL-GNVIDPL 159 (689)
Q Consensus 133 ~v~~hg~~~~~~g--~KmSKS~-gn~~~~~ 159 (689)
.++.+.++...+| .|||||. +|.|.+.
T Consensus 273 ~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~ 302 (406)
T 3tze_A 273 SSIYVSLLPDLKGVNRKMSASDPNSSIYLD 302 (406)
T ss_dssp EEEEECCCCCTTSCCCCSSCSCGGGSCBTT
T ss_pred eeeccCcccCCCCCCcCCCCCCCCCcccCC
Confidence 3446788888899 6999998 6788643
No 114
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=63.37 E-value=2 Score=45.31 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=26.4
Q ss_pred EEEcceeeCCC-----------------Cceeeec-cCCccCchhhhhcCChhhHHHHHhh
Q psy944 134 VFLHPIVRDAH-----------------GRKMSKS-LGNVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 134 v~~hg~~~~~~-----------------g~KmSKS-~gn~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
++.+.+++..+ |+||||| .+|.|.+.+= ++.++-++.+
T Consensus 208 ~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d~-----p~~i~~Ki~~ 263 (364)
T 2cya_A 208 AIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVDS-----DDDIRRKIRK 263 (364)
T ss_dssp EEEECCCBCSSCC----------------CBCCSSSGGGSCBTTCC-----HHHHHHHHHT
T ss_pred eeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccCC-----HHHHHHHHHh
Confidence 45567787777 7999999 6888876552 6666665554
No 115
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=63.20 E-value=10 Score=40.00 Aligned_cols=81 Identities=17% Similarity=0.138 Sum_probs=43.1
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHH
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEK 315 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~ 315 (689)
++.+..|. -|||.||+||.+..+ -.+.+++. .|+++.+..|-. |++- ....+.+ .+.
T Consensus 33 ~~~vy~G~-~PTg~lHlG~yl~~l--~~~~~lQ~-~G~~~~~~iaD~-ha~~---------~~~~g~~---------~e~ 89 (375)
T 2cyc_A 33 PLQHYIGF-EISGYIHLGTGLMAG--AKIADFQK-AGIKTRVFLADW-HSWI---------NDKLGGD---------LEV 89 (375)
T ss_dssp CCBEEEEE-CCCSCCBHHHHHHHH--HHHHHHHH-TTCBCEEEECHH-HHHH---------TTGGGGC---------HHH
T ss_pred CcEEEeCC-CCCCCcCchHHHHHH--HHHHHHHH-CCCcEEEEecCc-EEEc---------CCCCCCC---------HHH
Confidence 34455554 567999999955533 23445554 488876655532 2111 0000111 123
Q ss_pred HHHHH-HHHHHHHHHHHHHhccccc
Q psy944 316 VWEWK-KEKGDRIYEQMKLMGSSLD 339 (689)
Q Consensus 316 ~~~~~-~~~~~~~~~~l~~lGi~~D 339 (689)
+++++ .+....+..++.++|+..+
T Consensus 90 i~~~~~~~~~~~~~~~~la~G~dp~ 114 (375)
T 2cyc_A 90 IQEVALKYFKVGMEKSIEVMGGDPK 114 (375)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 34445 4444555678889997655
No 116
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=62.23 E-value=4.5 Score=42.73 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=28.1
Q ss_pred CCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
.++|+|..|. -|||.+|+||.... + -.++..-.|+++.+..+
T Consensus 68 gk~~~v~sG~-~PTG~lHLGhyv~~-~---~~~~lq~~~~~~~~~Ia 109 (372)
T 3a04_A 68 GERVAVLTGF-MPSGKFHFGHKLTV-D---QLIYLQKNGFKVFVAIA 109 (372)
T ss_dssp TCCCEEEEEE-CCCSCCBHHHHHHH-H---HHHHHHHTTCEEEEEEC
T ss_pred CCCCEEEeCc-CCCcHhHHHHHHHH-H---HHHHHHhCCCeEEEEEe
Confidence 4677777775 67899999998743 2 23333346898876554
No 117
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=61.48 E-value=4.2 Score=42.59 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=22.8
Q ss_pred ecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 239 MVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 239 i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
+..|. -|||.||+||.++.+. -+.+++. |+++.+..|
T Consensus 7 i~sG~-~PTG~lHLGn~vg~l~--~~~~lQ~--~~~~~~~Ia 43 (348)
T 2yy5_A 7 ALTGI-QASGKQHLGNYLGVMQ--SLIELQE--QCQLFVFVA 43 (348)
T ss_dssp EEEEE-CCCTTCBHHHHHHTGG--GHHHHHH--HSEEEEEEC
T ss_pred EEEee-CCCCcccHHHHHHHHH--HHHHHHh--CCcEEEEEc
Confidence 33443 4679999999887652 2224444 677765544
No 118
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=61.02 E-value=7.3 Score=41.28 Aligned_cols=43 Identities=9% Similarity=-0.086 Sum_probs=28.5
Q ss_pred CCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
++++.+..|. -|||.||+||..... .+.+++..-|..+....|
T Consensus 80 ~~~~~vysG~-~PTG~lHLGh~v~~~---~~~~lQ~~~g~~v~i~I~ 122 (386)
T 3hzr_A 80 KKPTFIFIQK-YPQKEVALEEYITLE---FARYLQDAFNIQVIIQIL 122 (386)
T ss_dssp TCCEEEEEEE-CCCSSCBGGGHHHHH---HHHHHHHHHCCEEEEEEC
T ss_pred CCCeEEEecc-CCCCCccHHHHHHHH---HHHHHHHhcCCeEEEEeC
Confidence 4567777776 678999999977652 233355555777776633
No 119
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=60.90 E-value=4.4 Score=42.34 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=21.7
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccccc
Q psy944 245 NVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAG 285 (689)
Q Consensus 245 ~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~G 285 (689)
-|||.+|+||..+.+. -+.+++ .++++.+..+ |.|.
T Consensus 23 ~PTG~lHLGh~vg~l~--~~~~lQ--~~~~~~~~ia-D~hA 58 (346)
T 3n9i_A 23 QPSGELTIGNYMGALR--QWVQMQ--DDYDCIYCIV-DLHA 58 (346)
T ss_dssp CSCSCCBHHHHHHTHH--HHHTTT--TTSEEEEEEC-HHHH
T ss_pred CCCCcccHHHHHHHHH--HHHHHH--hhCcEEEEEe-ccee
Confidence 6789999999876641 122233 3677765544 4443
No 120
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=58.82 E-value=2.8 Score=43.98 Aligned_cols=27 Identities=26% Similarity=0.081 Sum_probs=19.6
Q ss_pred eEEEcceeeCC-CC-ceeeecc-CCccCch
Q psy944 133 EVFLHPIVRDA-HG-RKMSKSL-GNVIDPL 159 (689)
Q Consensus 133 ~v~~hg~~~~~-~g-~KmSKS~-gn~~~~~ 159 (689)
.++.+.++... +| .|||||. +|.|.+.
T Consensus 216 ~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~ 245 (348)
T 2j5b_A 216 ISLSHHMLMSLSGPKKKMSKSDPQGAIFMD 245 (348)
T ss_dssp EEEEBCCCCCTTCSSCCCSTTCGGGSCBTT
T ss_pred eeecCccccCCCCcccccccCCCCCeEeec
Confidence 45566777777 56 7999998 5777643
No 121
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=58.47 E-value=12 Score=42.72 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=28.1
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHH-HHHHHHhcCCeEeeCCCcccccC
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDS-ITRWNRMKGKTTLWNPGCDHAGI 286 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~-laRy~rm~G~~V~~~~G~D~~Gl 286 (689)
++.+..|. -|||.||+|| .++.-+ +.+++. .|+++.+..| |.|++
T Consensus 40 ~~~vy~G~-~PTg~lHLG~---~v~~~~~~~~lQ~-~G~~~~~lIa-D~ha~ 85 (690)
T 3p0j_A 40 LIRCYDGF-EPSGRMHIAQ---GIFKAVNVNKCTA-AGCEFVFWVA-DWFAL 85 (690)
T ss_dssp TEEEEEEE-CCCSCCBHHH---HHHHHHHHHHHHH-TTEEEEEEEC-CGGGG
T ss_pred CceEEeee-cCCCcchhHh---hHHHHHHHHHHHH-CCCcEEEEEe-eeEEE
Confidence 45555555 6788999999 233222 445554 5888876666 55554
No 122
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=58.27 E-value=6.5 Score=41.68 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=26.9
Q ss_pred Ccee----ecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccC
Q psy944 235 GKFV----MVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGI 286 (689)
Q Consensus 235 ~~f~----i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Gl 286 (689)
++|+ +..|. -|||.+|+||..+.+.. +.+++ .|+++.+..+ |.|++
T Consensus 30 ~p~~m~~ri~sG~-~PTG~lHLGhyvGal~~--~~~LQ--~~~~~~~~Ia-D~hAl 79 (388)
T 3prh_A 30 DPFTMKQTIFSGI-QPSGSVTLGNYIGAMKQ--FVELQ--HDYNSYFCIV-DQHAI 79 (388)
T ss_dssp -----CCEEEEEE-CCCSCCBHHHHHHTHHH--HHHTT--TTSEEEEEEC-HHHHT
T ss_pred CCcccCCeEEEee-CCCCcchHHHHHHHHHH--HHHHH--ccCcEEEEEe-cceee
Confidence 4555 66665 67899999998776531 22333 3888866554 54543
No 123
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=58.10 E-value=2.9 Score=42.81 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=4.9
Q ss_pred Ec-ceeeCCCCceeeeccCCc
Q psy944 136 LH-PIVRDAHGRKMSKSLGNV 155 (689)
Q Consensus 136 ~h-g~~~~~~g~KmSKS~gn~ 155 (689)
.| +++++.+|+|||||.||+
T Consensus 216 ~H~pll~~~~g~KLSKR~g~~ 236 (298)
T 1nzj_A 216 IHLPLALNPQGAKLSKQNHAP 236 (298)
T ss_dssp EEECBCCC-------------
T ss_pred EEeeeeECCCCCcccccCCcc
Confidence 44 777789999999999998
No 124
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=57.74 E-value=8.4 Score=37.43 Aligned_cols=28 Identities=36% Similarity=0.318 Sum_probs=24.7
Q ss_pred ceEEEEeccHHHHhhcccccccCccccc
Q psy944 495 GEIVVATTRLETLFADVAVAVHPEDERY 522 (689)
Q Consensus 495 ~~~~i~~~~~e~~~~~~~~~~~~~~~~~ 522 (689)
..+.|.|+||.++++.++++++|++.-.
T Consensus 38 ~~l~vwTTtPwTL~gn~~iav~pe~~yv 65 (219)
T 3o0a_A 38 IYIDVFTTRPDTVFGATFVVLAPEHPLV 65 (219)
T ss_dssp EEEEEEESCGGGGGGCCEEEECTTCTHH
T ss_pred CEEEEEECCcchhhcccEEEECCCCcEE
Confidence 5799999999999999999999987543
No 125
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=56.74 E-value=2.9 Score=44.28 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=27.3
Q ss_pred EEEcceeeCCCC------------------ceeeecc-CCccCchhhhhcCChhhHHHHHhh
Q psy944 134 VFLHPIVRDAHG------------------RKMSKSL-GNVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 134 v~~hg~~~~~~g------------------~KmSKS~-gn~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
++.+.+++..+| +|||||. +|.|.+.+= ++.++-.+.+
T Consensus 220 ~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~-----p~~i~~KI~~ 276 (375)
T 2cyc_A 220 AVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDS-----PEEIRQKLRK 276 (375)
T ss_dssp EEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCC-----HHHHHHHHHH
T ss_pred EeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCCC-----HHHHHHHHHH
Confidence 345678888888 8999998 787876543 6666666654
No 126
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=56.62 E-value=2.8 Score=45.28 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=18.8
Q ss_pred eEEEcceeeCCCCc--eeeeccCC-ccC
Q psy944 133 EVFLHPIVRDAHGR--KMSKSLGN-VID 157 (689)
Q Consensus 133 ~v~~hg~~~~~~g~--KmSKS~gn-~~~ 157 (689)
.++.+.++...+|. |||||.+| .|.
T Consensus 317 ~~~~~~~l~gLdG~~~KMSKS~~ns~I~ 344 (451)
T 3foc_A 317 AYLLGKFLPGLQGSGTKMSASDPNSAIY 344 (451)
T ss_dssp EEEEECCCCBTTBTTCCCCTTCGGGSCB
T ss_pred eeecCCcccCCCCCCCccCCCCCCCeee
Confidence 34567778788885 99999987 554
No 127
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=54.70 E-value=2 Score=44.93 Aligned_cols=28 Identities=32% Similarity=0.226 Sum_probs=18.5
Q ss_pred CceEEE--cceeeCC-CC-ceeeecc---CCccCc
Q psy944 131 HSEVFL--HPIVRDA-HG-RKMSKSL---GNVIDP 158 (689)
Q Consensus 131 ~k~v~~--hg~~~~~-~g-~KmSKS~---gn~~~~ 158 (689)
|..++. +..+... +| +|||||. +|.|.+
T Consensus 181 p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L 215 (341)
T 3sz3_A 181 PEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITL 215 (341)
T ss_dssp CEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBT
T ss_pred ChhhhccCcccccCCCCCCCccCCCCCCCCCeeec
Confidence 344443 4556656 57 7999999 788854
No 128
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=50.86 E-value=9.2 Score=39.98 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=22.6
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCC
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNP 279 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~ 279 (689)
++.+..|. -|||.||+||.++.+ --+.+++.. +++.+..
T Consensus 22 ~~~vysG~-~PTG~lHLGn~~g~l--~~~~~lQ~~--~~~~~~I 60 (351)
T 1yi8_B 22 RPRVLTGD-RPTGALHLGHLAGSL--QNRVRLQDE--AELFVLL 60 (351)
T ss_dssp CSEEEEEE-CCSSCCBHHHHHHTH--HHHHHHTSS--SEEEEEE
T ss_pred CcEEEEee-CCCCCccHHHHHHHH--HHHHHHHHh--CCeEEEE
Confidence 44455553 458999999988754 123334433 6665443
No 129
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=50.66 E-value=23 Score=37.59 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=27.5
Q ss_pred CceeecCCCCCCC-ccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 235 GKFVMVIPPPNVT-GTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 235 ~~f~i~~~pP~~n-G~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
+++.+..|. -|| |.||+||..... .+.++++.-|..+.+..|
T Consensus 73 ~~~~vy~G~-~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~ 115 (393)
T 3hv0_A 73 ELFYLYTGR-GPSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQLT 115 (393)
T ss_dssp CCCEEEEEE-CCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEEEC
T ss_pred CCeEEEeCC-CCCCCCccHHHHHHHH---HHHHHHHhcCCCeEeecc
Confidence 456676775 567 689999976554 344566666777666444
No 130
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=49.54 E-value=9 Score=39.39 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=24.6
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
++.+..|. -|||.||+|| +..+. .+.+++. .|+++.+..|
T Consensus 28 ~~~vy~G~-~PTg~lHlGh-l~~l~--~~~~lQ~-~g~~~~~~i~ 67 (314)
T 2zp1_A 28 EKSAYIGF-EPSGKIHLGH-YLQIK--KMIDLQN-AGFDIIILLA 67 (314)
T ss_dssp SEEEEEEE-CCCSSCBHHH-HHHHH--HHHHHHH-TTEEEEEEEC
T ss_pred CCEEEEcc-CCCCCcchhh-HHHHH--HHHHHHH-CCCCEEEEEe
Confidence 44455553 3479999999 55442 2344443 4888876665
No 131
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=49.06 E-value=6.9 Score=40.71 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=21.0
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhcC-CeEeeCCC
Q psy944 245 NVTGTLHLGHALTNAVEDSITRWNRMKG-KTTLWNPG 280 (689)
Q Consensus 245 ~~nG~lHiGH~~~~~i~D~laRy~rm~G-~~V~~~~G 280 (689)
-|||.||+||.++.+ -.+.+++. .| +++.+..|
T Consensus 9 ~PTg~lHlGh~~g~l--~~~~~lQ~-~G~~~~~~~Ia 42 (337)
T 2el7_A 9 QPSGEIHIGNYLGAI--KQWVAIGE-KLGRDAFFCIV 42 (337)
T ss_dssp CSCSCCBHHHHHTHH--HHHHHHHH-HHGGGEEEEEC
T ss_pred CCCCcccHHHHHHHH--HHHHHHHh-cCCCCEEEEEe
Confidence 467999999988664 22334443 46 77765544
No 132
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=48.48 E-value=6.6 Score=41.78 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=29.5
Q ss_pred CCceeecCCCCCCCc-cchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcc
Q psy944 234 KGKFVMVIPPPNVTG-TLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCD 282 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG-~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D 282 (689)
.+++.+..|. -||| .||+||.... ..+.+++..-|..+....|-+
T Consensus 76 ~~~~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~I~D~ 121 (395)
T 3i05_A 76 GQPFYLYTGR-GPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQMTDD 121 (395)
T ss_dssp TCCEEEEEEE-CCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEEECHH
T ss_pred CCCeEEEEee-cCCCccchHHHHHHH---HHHHHHHHhcCCcEEEEEcch
Confidence 3566777775 6788 7999998654 233445666577777654433
No 133
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=48.34 E-value=9.1 Score=41.85 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=34.8
Q ss_pred EEEc-ceeeCCCCceeeeccCCccCchhhhh-cCChhhHHHHHhhcC
Q psy944 134 VFLH-PIVRDAHGRKMSKSLGNVIDPLDVVK-GISLAGLQGRLLQDS 178 (689)
Q Consensus 134 v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~-~~~~d~~r~~l~~~~ 178 (689)
.+.| .++++.+|+||||..|. +++.++.+ +|.+++++-||..-|
T Consensus 250 ~f~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG 295 (490)
T 4g6z_A 250 VYAHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLG 295 (490)
T ss_dssp EEEEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSS
T ss_pred eEEEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhC
Confidence 3455 78889999999999986 56666664 599999999988643
No 134
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=48.32 E-value=5.1 Score=45.88 Aligned_cols=36 Identities=8% Similarity=-0.255 Sum_probs=24.9
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHh-cCCeEeeCCCccc
Q psy944 246 VTGTLHLGHALTNAVEDSITRWNRM-KGKTTLWNPGCDH 283 (689)
Q Consensus 246 ~nG~lHiGH~~~~~i~D~laRy~rm-~G~~V~~~~G~D~ 283 (689)
++|.+|+||+..... ++..|+++ .|..|.+..|-++
T Consensus 390 s~g~lHLGh~v~~~k--~l~~~~~~~~g~~v~ilIaD~~ 426 (690)
T 3p0j_A 390 ALLKVPLDVAEGMIK--VTKDFIAAHPEGTVTLVLPDWS 426 (690)
T ss_dssp CCSSCBHHHHHHHHH--HHHHHHHHCSSCEEEEEECTTH
T ss_pred CCCCcccchHHHHHH--HHHHHHHHcCCCeEEEEEecch
Confidence 899999999865432 24456555 4788888777554
No 135
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=48.04 E-value=8.8 Score=41.33 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=28.9
Q ss_pred CceeecCCCCCCC-ccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 235 GKFVMVIPPPNVT-GTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 235 ~~f~i~~~pP~~n-G~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
+++.+..|. -|| |.||+||...... +.+++...|+.+.+..|
T Consensus 101 ~~~~vy~G~-dPTag~LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~ 143 (432)
T 2ip1_A 101 KPFFLYTGR-GPSSDSMHLGHMIPFVF---TKWLQEVFDVPLVIELT 143 (432)
T ss_dssp CCCEEEEEE-CCCSSCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC
T ss_pred CCeEEEEee-cCCCCCccHHHHHHHHH---HHHHHHHcCCeEEEEEe
Confidence 456666665 567 8999999886542 33556557888777766
No 136
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=47.81 E-value=11 Score=40.73 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=29.8
Q ss_pred CCceeecCCCCCCC-ccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCc
Q psy944 234 KGKFVMVIPPPNVT-GTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGC 281 (689)
Q Consensus 234 ~~~f~i~~~pP~~n-G~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~ 281 (689)
.+++.+..|. -|| |.||+||...... +.+++...|+.+.+..|=
T Consensus 106 ~~~~~vy~G~-dPTag~LHLGh~v~~~~---~~~lQ~~~G~~~iilIgD 150 (437)
T 1r6u_A 106 KKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTD 150 (437)
T ss_dssp TCCEEEEEEE-CCCSSCCBHHHHHHHHH---HHHHHHHHTCCEEEEECH
T ss_pred CCCcEEEEcc-cCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEec
Confidence 3567777776 566 8999999886542 334555468887766654
No 137
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=46.97 E-value=9.8 Score=41.51 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=29.8
Q ss_pred CCceeecCCCCCCC-ccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCc
Q psy944 234 KGKFVMVIPPPNVT-GTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGC 281 (689)
Q Consensus 234 ~~~f~i~~~pP~~n-G~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~ 281 (689)
.+++.+..|. -|| |.||+||...... +.+++...|+++.+..|=
T Consensus 153 ~~~~~vy~G~-dPTag~LHLGh~v~~~~---~~~lQ~~~g~~~iilI~D 197 (477)
T 1r6t_A 153 KKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTD 197 (477)
T ss_dssp TCCEEEEEEE-CCCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEEECH
T ss_pred CCCcEEEEcc-cCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEec
Confidence 3467777776 566 8999999987653 234555478887766654
No 138
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=45.70 E-value=9.5 Score=40.69 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=27.8
Q ss_pred CCceeecCCCCCCCc-cchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 234 KGKFVMVIPPPNVTG-TLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG-~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
+++|.+..|. -||| .||+||..... .+.+++..-|..+....|
T Consensus 99 ~~p~~vy~G~-~PTg~~lHLGh~v~~~---~~~~lQ~~~g~~~~i~Ia 142 (406)
T 3tze_A 99 NRPFYLYTGR-GPSSKTMHIGHTIPFL---LCKYMQDAFKIRLVIQIT 142 (406)
T ss_dssp TCCEEEEEEE-CCCSSCCBGGGHHHHH---HHHHHHHHHTCCEEEEEC
T ss_pred CCCeEEEEee-CCCCCcccHHHHHHHH---HHHHHHHhcCCcEEEEee
Confidence 4567777776 6788 79999977652 233355555777665433
No 139
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=44.33 E-value=13 Score=38.80 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=26.2
Q ss_pred ceeecCCCCCCCcc-chhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 236 KFVMVIPPPNVTGT-LHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 236 ~f~i~~~pP~~nG~-lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
++.+..|. -|||. ||+|| +..+. .+.+++. .|+++.+..|
T Consensus 46 ~~~vy~G~-~PTg~sLHLGh-l~~l~--~~~~lQ~-~G~~~~~lIa 86 (356)
T 2pid_A 46 PQTIYCGF-DPTADSLHVGH-LLALL--GLFHLQR-AGHNVIALVG 86 (356)
T ss_dssp CCEEEEEE-CCSSSSCBHHH-HHHHH--HHHHHHH-TTCEEEEEEC
T ss_pred CCEEEEee-cCCCCcccHHH-HHHHH--HHHHHHH-CCCcEEEEEc
Confidence 35566665 67896 99999 44433 2555554 5888876665
No 140
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=44.03 E-value=14 Score=38.14 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=25.2
Q ss_pred ceeecCCCCCCCcc-chhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 236 KFVMVIPPPNVTGT-LHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 236 ~f~i~~~pP~~nG~-lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
++.+..|. -|||. ||+||.. .+ -.+.+++ -.|+++.+..|
T Consensus 33 ~~~vy~G~-~PTg~slHlGh~l-~l--~~~~~lQ-~~g~~~~~~i~ 73 (322)
T 2yxn_A 33 PIALVCGF-DPTADSLHLGHLV-PL--LCLKRFQ-QAGHKPVALVG 73 (322)
T ss_dssp CCEEEEEE-CCSSSSCBHHHHH-HH--HHHHHHH-HTTCEEEEEEC
T ss_pred CCEEEEee-cCCCCcccHHHHH-HH--HHHHHHH-HcCCcEEEEEc
Confidence 34455554 57799 9999976 22 2344555 34888876665
No 141
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=43.30 E-value=14 Score=39.28 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=26.1
Q ss_pred ceeecCCCCCCCcc-chhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 236 KFVMVIPPPNVTGT-LHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 236 ~f~i~~~pP~~nG~-lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
++.+..|. -|||. ||+||.. .+ -.+.++++ .|+++.+..|
T Consensus 64 ~~~vy~G~-dPTg~sLHlGhlv-~l--~~l~~lQ~-~G~~~~~lIg 104 (392)
T 1y42_X 64 RIGAYVGI-DPTAPSLHVGHLL-PL--MPLFWMYL-EGYKAFTLIG 104 (392)
T ss_dssp CCEEEEEE-CCCSSSCBGGGHH-HH--HHHHHHHH-HTCEEEEEEC
T ss_pred CCEEEEee-cCCCCCccHHHHH-HH--HHHHHHHH-cCCcEEEEEc
Confidence 44555554 57799 9999977 22 23455554 4898876665
No 142
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=43.14 E-value=12 Score=37.27 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=24.3
Q ss_pred CceEEEEeccHHHHhhcccccccCccc
Q psy944 494 SGEIVVATTRLETLFADVAVAVHPEDE 520 (689)
Q Consensus 494 ~~~~~i~~~~~e~~~~~~~~~~~~~~~ 520 (689)
+..+.|+|+||++++|.+++.++|++.
T Consensus 29 ~~~l~v~TTrP~TL~g~talav~Pe~~ 55 (252)
T 2wfd_A 29 NIFLVAATLRPETMFGQTNCWVRPDMK 55 (252)
T ss_dssp CEEEEEEESCGGGGGGCCEEEECSSSC
T ss_pred CCEEEEEECChHHHhhhheEEECCCCc
Confidence 457899999999999999999999864
No 143
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=43.07 E-value=13 Score=38.61 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=21.9
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 245 NVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 245 ~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
-|||.||+||.++.+. .+.+++ -.|+++.+..|
T Consensus 20 ~PTG~lHLGn~~g~l~--~~~~lQ-~~G~~~~~~Ia 52 (340)
T 2g36_A 20 RPTGKLHIGHLVGALE--NWVKLQ-EEGNECFYFVA 52 (340)
T ss_dssp CCCSSCBHHHHHTHHH--HHHHHH-HTTCEEEEEEC
T ss_pred CCCCcccHHhHHHHHH--HHHHHH-HCCCCEEEEEe
Confidence 4678999999887542 333443 35888876653
No 144
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=42.56 E-value=14 Score=39.65 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=26.6
Q ss_pred CceeecCCCCCCCcc-chhHHHHHHHHHHHHHHHHHhcCCeEeeCCCc
Q psy944 235 GKFVMVIPPPNVTGT-LHLGHALTNAVEDSITRWNRMKGKTTLWNPGC 281 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~-lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~ 281 (689)
+++.+..|. -|||. ||+||.. . --.+.+++. .|+++.+..|=
T Consensus 36 ~~~~vy~G~-dPTg~sLHlGh~v-~--l~~l~~lQ~-~G~~~i~lIgD 78 (432)
T 1h3f_A 36 RPLTVKLGA-DPTRPDLHLGHAV-V--LRKMRQFQE-LGHKVVLIIGD 78 (432)
T ss_dssp SCCEEEEEE-CTTCCSCBHHHHH-H--HHHHHHHHH-TTCEEEEEECC
T ss_pred CCcEEEEcc-cCCCCCCchhhHH-H--HHHHHHHHH-CCCCEEEEEcc
Confidence 345555554 57785 9999976 2 234555554 58888766663
No 145
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=42.38 E-value=9.4 Score=38.15 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=24.1
Q ss_pred CceEEEEeccHHHHhhcccccccCccc
Q psy944 494 SGEIVVATTRLETLFADVAVAVHPEDE 520 (689)
Q Consensus 494 ~~~~~i~~~~~e~~~~~~~~~~~~~~~ 520 (689)
+..+.|+|+||++++|.+++.++|+..
T Consensus 32 ~~~l~v~TTrP~TL~g~talav~Pe~~ 58 (261)
T 2wfg_A 32 KVYLVAATLRPETMYGQTCCFVSPKID 58 (261)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCE
T ss_pred CCEEEEEECCchHHhhhheEEECCCCc
Confidence 457899999999999999999999854
No 146
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=41.23 E-value=6.7 Score=40.92 Aligned_cols=21 Identities=43% Similarity=0.370 Sum_probs=14.3
Q ss_pred ceeeCC-CC-ceeeeccC---CccCc
Q psy944 138 PIVRDA-HG-RKMSKSLG---NVIDP 158 (689)
Q Consensus 138 g~~~~~-~g-~KmSKS~g---n~~~~ 158 (689)
..+... +| +|||||.+ |.|.+
T Consensus 196 ~~l~gL~dg~~KMSKS~~~~~~~I~L 221 (346)
T 3n9i_A 196 ARVMSLQDPTKKMSKSDDNRNNVIEL 221 (346)
T ss_dssp CCCBCSSCTTSBCCTTCSCGGGCCBT
T ss_pred ccCccCCCCccccCCCCCCCCceecC
Confidence 345555 67 59999987 56653
No 147
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=40.63 E-value=16 Score=38.11 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=25.4
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
++.+..|. -|||.||+||.+..+ -.+.++++ .|+++.+..|
T Consensus 40 ~~~vy~G~-~PTg~lHlGhyl~~l--~~~~~lQ~-~G~~~~~~i~ 80 (348)
T 2j5b_A 40 IFTAYNGF-EPSGRIHIAQALITV--MNTNNMIE-CGGQMIIYIA 80 (348)
T ss_dssp CEEEEEEE-CCCSSCBHHHHHHHH--HHHHHHHH-TTEEEEEEEC
T ss_pred CCEEEecc-CCCCCCchhHHHHHH--HHHHHHHH-cCCcEEEEec
Confidence 44555555 566999999943332 23445554 4888876655
No 148
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=40.57 E-value=16 Score=39.04 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=25.8
Q ss_pred eeecCCCCCCCcc-chhHHHHHHHHHHHHHHHHHhcCCeEeeCCCc
Q psy944 237 FVMVIPPPNVTGT-LHLGHALTNAVEDSITRWNRMKGKTTLWNPGC 281 (689)
Q Consensus 237 f~i~~~pP~~nG~-lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~ 281 (689)
+.+..|. -|||+ ||+||.. .+ -.+.+++. .|+++.+..|=
T Consensus 33 ~~iy~G~-dPTg~sLHlGh~v-~l--~~~~~lQ~-~G~~~~~lIgd 73 (420)
T 1jil_A 33 VTLYCGA-DPTADSLHIGHLL-PF--LTLRRFQE-HGHRPIVLIGG 73 (420)
T ss_dssp CEEEEEE-CCSSSSCBHHHHH-HH--HHHHHHHH-TTCEEEEEECT
T ss_pred CEEEEee-CCCCCCccHHHHH-HH--HHHHHHHH-CCCcEEEEEcC
Confidence 4444554 57788 9999976 22 23455554 58988777663
No 149
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=39.79 E-value=16 Score=39.24 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=25.4
Q ss_pred ceeecCCCCCCCcc-chhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 236 KFVMVIPPPNVTGT-LHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 236 ~f~i~~~pP~~nG~-lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
++.+..|. -|||+ ||+||. ..+. .+.+++. .|+++.+..|
T Consensus 32 ~~~iy~G~-dPTg~sLHLGhl-v~l~--~l~~lQ~-~G~~~i~lIg 72 (432)
T 2jan_A 32 PMTVYAGF-DPTAPSLHAGHL-VPLL--TLRRFQR-AGHRPIVLAG 72 (432)
T ss_dssp CCEEEEEE-CCSSSSCBGGGH-HHHH--HHHHHHH-TTCEEEEEEC
T ss_pred CCEEEEee-CCCCCCcCHHHH-HHHH--HHHHHHH-CCCcEEEEEc
Confidence 34444554 57895 999993 3333 3556654 5898887765
No 150
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=39.54 E-value=16 Score=39.02 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=25.6
Q ss_pred eeecCCCCCCCcc-chhHHHHHHHHHHHHHHHHHhcCCeEeeCCCc
Q psy944 237 FVMVIPPPNVTGT-LHLGHALTNAVEDSITRWNRMKGKTTLWNPGC 281 (689)
Q Consensus 237 f~i~~~pP~~nG~-lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~ 281 (689)
+.+..|. -|||+ ||+||.. . --.+.+++. .|+++.+..|=
T Consensus 31 ~~iy~G~-dPTg~sLHlGh~v-~--l~~l~~lQ~-~G~~~i~lIgd 71 (419)
T 2ts1_A 31 VTLYCGF-DPTADSLHIGHLA-T--ILTMRRFQQ-AGHRPIALVGG 71 (419)
T ss_dssp CEEEEEE-CCSSSSCBGGGHH-H--HHHHHHHHH-TTCEEEEEECT
T ss_pred CEEEEee-CCCCCCccHHHHH-H--HHHHHHHHH-CCCcEEEEEcC
Confidence 3444554 57788 9999976 2 223455553 58988777663
No 151
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=39.47 E-value=18 Score=38.09 Aligned_cols=43 Identities=12% Similarity=0.225 Sum_probs=25.9
Q ss_pred eeecCCCCCCCccchhHHHHHHHHHHH-HHHHHHhcCCeEeeCCCccccc
Q psy944 237 FVMVIPPPNVTGTLHLGHALTNAVEDS-ITRWNRMKGKTTLWNPGCDHAG 285 (689)
Q Consensus 237 f~i~~~pP~~nG~lHiGH~~~~~i~D~-laRy~rm~G~~V~~~~G~D~~G 285 (689)
..+..|. -|||.||+||. ++.-+ +.+++. .|+.+.+..| |.|+
T Consensus 57 ~~iy~G~-~PTg~lHlG~g---vl~~~~~~~lQ~-~G~~~~~lIa-D~ha 100 (373)
T 3vgj_A 57 LICYDGF-EPSGRMHIAQG---LLKSIIVNKLTS-NGCTFIFWIA-DWFA 100 (373)
T ss_dssp CEEEEEE-CCCSSCBHHHH---HHHHHHHHHHHT-TTCEEEEEEC-HHHH
T ss_pred ceEEeCC-CCCCCceehhh---HHHHHHHHHHHH-CCCcEEEEEe-ccee
Confidence 3455554 56789999992 33322 455554 5888877666 4443
No 152
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=35.41 E-value=11 Score=40.01 Aligned_cols=20 Identities=30% Similarity=0.170 Sum_probs=14.2
Q ss_pred eeeCC-CC-ceeeecc---CCccCc
Q psy944 139 IVRDA-HG-RKMSKSL---GNVIDP 158 (689)
Q Consensus 139 ~~~~~-~g-~KmSKS~---gn~~~~ 158 (689)
.+... +| +|||||. +|.|.+
T Consensus 216 ~l~gL~dg~~KMSKS~~~~~n~I~L 240 (388)
T 3prh_A 216 RIMSLNDPLKKMSKSDPNQKAYITL 240 (388)
T ss_dssp CCBCSSCTTSBCCTTCSSTTSCCBT
T ss_pred ccccCCCCCCccCCCCCCCCCeeec
Confidence 34444 44 7999999 888864
No 153
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=34.39 E-value=24 Score=38.07 Aligned_cols=43 Identities=16% Similarity=0.078 Sum_probs=28.5
Q ss_pred CCceeecCCCCCCC-ccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 234 KGKFVMVIPPPNVT-GTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 234 ~~~f~i~~~pP~~n-G~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
.++|.+..|. -|| |.||+||..... .+.+++..-|..+....|
T Consensus 89 g~p~~vytG~-dPTagsLHLGH~v~~~---~l~~lQ~~~g~~v~I~Ig 132 (451)
T 3foc_A 89 GHPIYIYTGR-GPSSGALHLGHLLPFI---FTKYLQDAFKCYVVIQIT 132 (451)
T ss_dssp TCCEEEEEEE-CCCSSCCBHHHHHHHH---HHHHHHHHHTCEEEEEEC
T ss_pred CCCeEEEecC-CCCCCCccHHHHHHHH---HHHHHHHccCceEEEEee
Confidence 3567777776 567 899999976543 233456655777776433
No 154
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=33.95 E-value=13 Score=39.19 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=18.6
Q ss_pred eEEEcceeeCCCCceeeeccCC-ccC
Q psy944 133 EVFLHPIVRDAHGRKMSKSLGN-VID 157 (689)
Q Consensus 133 ~v~~hg~~~~~~g~KmSKS~gn-~~~ 157 (689)
..+.+.++...+|+|||||..| .|.
T Consensus 242 ~~~~~~~~pgldG~KmS~S~~ns~I~ 267 (372)
T 3a04_A 242 ASTYHKLQPGLDGRKMSSSRPDSTIF 267 (372)
T ss_dssp EEEEECCCBCTTSSBCCTTSGGGSCB
T ss_pred hhhhhcccCCCCCCccCCCCCCcccc
Confidence 4556677777899999999844 554
No 155
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=26.54 E-value=28 Score=38.34 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=32.7
Q ss_pred EEEc-ceeeCCCCceeeeccCCccCchhhh-hcCChhhHHHHHhhc
Q psy944 134 VFLH-PIVRDAHGRKMSKSLGNVIDPLDVV-KGISLAGLQGRLLQD 177 (689)
Q Consensus 134 v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~-~~~~~d~~r~~l~~~ 177 (689)
.+.| .++++.+|+|+||..|..- +.++. ++|-+++|.-||+.-
T Consensus 259 ~y~H~pli~~~~g~kLSKR~~~~~-v~~~~~~G~lPeAl~NyLalL 303 (512)
T 4gri_A 259 IYCHLPMVMGNDGQKLSKRHGSTA-LRQFIEDGYLPEAIINYVTLL 303 (512)
T ss_dssp EEEEECCCBCTTSSBCCTTTSCCB-HHHHHHHTCCHHHHHHHHHHS
T ss_pred eEEecchhccccccccCccccccc-HHHHHHcCCChHHHHHHHHHh
Confidence 3454 8899999999999998764 44444 469999999887643
No 156
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=26.44 E-value=26 Score=19.78 Aligned_cols=9 Identities=22% Similarity=0.652 Sum_probs=7.3
Q ss_pred cccceEEEe
Q psy944 45 HRIPAYYVS 53 (689)
Q Consensus 45 ~pIP~~y~~ 53 (689)
-|+|++||.
T Consensus 4 kpvpiiycn 12 (21)
T 8tfv_A 4 KPVPIIYCN 12 (26)
T ss_dssp CCCCCEEEE
T ss_pred CcccEEEEc
Confidence 488999986
Done!