Query psy944
Match_columns 689
No_of_seqs 391 out of 3794
Neff 7.9
Searched_HMMs 13730
Date Fri Aug 16 19:25:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy944.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/944hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h3na3 c.26.1.1 (A:1-225,A:41 100.0 1.1E-39 8.3E-44 364.4 13.9 171 205-392 3-173 (494)
2 d1ffya3 c.26.1.1 (A:1-200,A:39 100.0 4.1E-39 3E-43 355.6 17.2 186 205-395 17-203 (450)
3 d1udza_ b.51.1.1 (A:) Isoleucy 100.0 1.5E-35 1.1E-39 284.6 13.1 158 425-624 18-178 (179)
4 d1wkaa1 b.51.1.1 (A:195-337) V 100.0 5.8E-35 4.2E-39 268.2 13.4 134 418-624 6-141 (143)
5 d1ivsa4 c.26.1.1 (A:1-189,A:34 100.0 1.5E-34 1.1E-38 316.7 17.2 188 200-392 3-190 (425)
6 d1ffya2 b.51.1.1 (A:201-394) I 100.0 2.9E-35 2.1E-39 287.5 2.3 161 426-624 24-188 (194)
7 d1ilea3 c.26.1.1 (A:1-197,A:38 100.0 6.3E-34 4.6E-38 314.1 7.2 193 200-392 2-195 (452)
8 d1h3na2 b.51.1.1 (A:226-417) L 100.0 3.9E-33 2.8E-37 271.7 9.2 169 417-623 6-189 (192)
9 d1ffya3 c.26.1.1 (A:1-200,A:39 99.9 8.7E-29 6.3E-33 272.4 4.3 176 2-179 226-433 (450)
10 d1pfva2 c.26.1.1 (A:4-140,A:17 99.9 2.1E-23 1.5E-27 221.4 12.2 137 235-390 2-138 (350)
11 d1ivsa4 c.26.1.1 (A:1-189,A:34 99.9 1.7E-22 1.3E-26 220.0 10.2 164 3-181 215-409 (425)
12 d1ilea3 c.26.1.1 (A:1-197,A:38 99.9 7.3E-23 5.3E-27 224.8 4.7 176 2-181 223-436 (452)
13 d2d5ba2 c.26.1.1 (A:1-348) Met 99.8 1.2E-21 8.7E-26 207.1 12.7 139 234-391 2-140 (348)
14 d1rqga2 c.26.1.1 (A:1-138,A:17 99.8 7.9E-21 5.8E-25 201.7 12.5 137 235-390 2-139 (361)
15 d1rqga2 c.26.1.1 (A:1-138,A:17 99.8 1.5E-20 1.1E-24 199.5 -0.0 169 1-180 160-342 (361)
16 d1h3na3 c.26.1.1 (A:1-225,A:41 99.7 1.1E-17 8.2E-22 185.0 3.8 166 15-181 210-479 (494)
17 d1pfva2 c.26.1.1 (A:4-140,A:17 99.5 3.7E-16 2.7E-20 164.9 -1.5 160 2-177 160-324 (350)
18 d1li5a2 c.26.1.1 (A:1-315) Cys 99.5 6.1E-14 4.5E-18 145.6 12.8 126 231-378 19-144 (315)
19 d2d5ba2 c.26.1.1 (A:1-348) Met 99.4 1.2E-13 8.5E-18 144.8 5.9 72 108-179 258-329 (348)
20 d1f7ua2 c.26.1.1 (A:136-483) A 99.1 2E-10 1.5E-14 120.2 12.5 143 233-378 6-190 (348)
21 d1irxa2 c.26.1.1 (A:3-319) Cla 99.0 1.9E-11 1.4E-15 124.6 1.7 59 231-290 14-72 (317)
22 d1iq0a2 c.26.1.1 (A:97-466) Ar 98.8 3.8E-09 2.8E-13 111.2 10.5 136 235-372 7-170 (370)
23 d1li5a2 c.26.1.1 (A:1-315) Cys 98.7 6.5E-10 4.8E-14 114.6 0.5 46 131-177 250-296 (315)
24 d1irxa2 c.26.1.1 (A:3-319) Cla 98.3 8.6E-08 6.2E-12 96.7 3.0 48 132-179 261-309 (317)
25 d1j09a2 c.26.1.1 (A:1-305) Glu 97.9 5.8E-06 4.2E-10 83.9 7.9 99 239-372 3-106 (305)
26 d1nzja_ c.26.1.1 (A:) Glutamyl 97.5 0.00016 1.2E-08 72.1 10.0 92 242-371 7-98 (286)
27 d1gtra2 c.26.1.1 (A:8-338) Glu 97.4 0.00025 1.8E-08 72.2 11.2 93 240-370 22-114 (331)
28 d1iq0a2 c.26.1.1 (A:97-466) Ar 94.5 0.0054 3.9E-07 63.0 2.0 45 134-179 286-355 (370)
29 d1wkaa1 b.51.1.1 (A:195-337) V 93.8 0.022 1.6E-06 49.9 4.2 37 481-518 1-37 (143)
30 d1f7ua2 c.26.1.1 (A:136-483) A 86.5 0.11 8.1E-06 52.2 2.0 33 147-179 272-332 (348)
31 d1j09a2 c.26.1.1 (A:1-305) Glu 84.4 0.25 1.8E-05 48.6 3.3 44 133-177 229-273 (305)
32 d1n3la_ c.26.1.1 (A:) Tyrosyl- 83.8 1 7.6E-05 44.4 7.9 41 236-281 32-72 (339)
33 d1h3fa1 c.26.1.1 (A:5-347) Tyr 82.5 0.41 3E-05 47.7 4.2 41 132-177 212-253 (343)
34 d1h3na2 b.51.1.1 (A:226-417) L 80.4 0.58 4.2E-05 42.4 4.0 37 484-520 5-41 (192)
35 d1j1ua_ c.26.1.1 (A:) Tyrosyl- 72.2 0.62 4.5E-05 45.5 1.8 28 133-160 189-217 (306)
36 d1jila_ c.26.1.1 (A:) Tyrosyl- 72.0 0.61 4.5E-05 45.9 1.7 43 132-176 215-257 (323)
37 d1r6ta2 c.26.1.1 (A:82-467) Tr 68.9 0.71 5.2E-05 46.7 1.4 44 233-280 71-115 (386)
38 d1j1ua_ c.26.1.1 (A:) Tyrosyl- 68.2 1.3 9.5E-05 43.1 3.2 32 245-280 36-67 (306)
39 d1i6la_ c.26.1.1 (A:) Tryptoph 66.2 1.9 0.00014 42.2 4.0 23 660-682 300-322 (326)
40 d1h3fa1 c.26.1.1 (A:5-347) Tyr 64.8 1.8 0.00013 42.7 3.5 41 235-280 32-73 (343)
41 d1udza_ b.51.1.1 (A:) Isoleucy 43.5 8.1 0.00059 33.9 3.8 36 485-520 4-45 (179)
42 d2ts1a_ c.26.1.1 (A:) Tyrosyl- 39.6 4.4 0.00032 39.3 1.4 28 133-160 216-243 (319)
43 d1ivsa1 a.2.7.3 (A:797-862) Va 39.4 4.7 0.00034 29.3 1.2 43 643-685 23-65 (66)
44 d1jila_ c.26.1.1 (A:) Tyrosyl- 32.3 13 0.00096 35.8 3.6 41 236-281 31-72 (323)
45 d2ts1a_ c.26.1.1 (A:) Tyrosyl- 28.8 15 0.0011 35.2 3.3 43 236-283 30-73 (319)
46 d1nzja_ c.26.1.1 (A:) Glutamyl 23.9 8.1 0.00059 36.6 0.2 19 136-154 214-232 (286)
47 d1n3la_ c.26.1.1 (A:) Tyrosyl- 21.6 16 0.0012 35.3 1.9 29 131-159 203-232 (339)
No 1
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=1.1e-39 Score=364.38 Aligned_cols=171 Identities=25% Similarity=0.363 Sum_probs=161.6
Q ss_pred CchHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccc
Q psy944 205 TDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHA 284 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~ 284 (689)
.|+|+.+|++|+++|+++++|+....+.++++|+|++|||||||.||||||++++++|+++||+||+|++|+|++|||||
T Consensus 3 ~Y~p~~iE~~~~~~W~~~~~~~~~~~~~~~~~~~i~~~pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G~~v~~~~G~D~~ 82 (494)
T d1h3na3 3 KYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAF 82 (494)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCCSSCCTTCEEEEEECCCCSSSCCBHHHHHHHHHHHHHHHHHHHTTCEEECCCCBCCS
T ss_pred CCCHHHHHHHHHHHHHHCCCcccCccccCCCCeEEEeCCCCCCCchhhhHHHHHHHHHHHHHHHHccCCcccCcCCcCcc
Confidence 69999999999999999998877656778889999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHH
Q psy944 285 GIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHE 364 (689)
Q Consensus 285 Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~ 364 (689)
|+|||.++++. ...|++|++++...+++++++||+++||+++|+|+|+.|.+.++++|.+|++
T Consensus 83 G~~~e~~~~k~-----------------~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~d~~~~~~~~~~f~~l~~ 145 (494)
T d1h3na3 83 GLPAENAALKF-----------------GVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWE 145 (494)
T ss_dssp SHHHHHHHHHT-----------------TCCHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHh-----------------CCChHHHHHHHHHHhHHHHHhcCcccCCCCceecCCccccchHHHHHHHhhh
Confidence 99999998752 2347899999999999999999999999999999999999999999999999
Q ss_pred cCCeeeecccccccCCCCcccCCCceee
Q psy944 365 AGDIYRSERLVHWSCSLKSAISDIEVDK 392 (689)
Q Consensus 365 kGliy~~~~~v~w~~~~~t~ls~~ev~~ 392 (689)
+|+||++.++|+|||+|+|+||++||+.
T Consensus 146 ~g~iy~~~~~~~~~~~~~t~l~~~ev~~ 173 (494)
T d1h3na3 146 KGLAYRAKGLVNWCPKCQTVLANEQVVE 173 (494)
T ss_dssp TTCEEEEEEEEEEETTTTEEECGGGEET
T ss_pred CCcEEeeeEEEEeecCccceecchhccc
Confidence 9999999999999999999999999964
No 2
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=100.00 E-value=4.1e-39 Score=355.63 Aligned_cols=186 Identities=23% Similarity=0.385 Sum_probs=173.7
Q ss_pred CchHHHHHHhhhcccccccccccc-ccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccc
Q psy944 205 TDALRFALAAYMSQGERTGRRKSI-GEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDH 283 (689)
Q Consensus 205 ~~~~~~iE~~~~~~W~~~~~~~~~-~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~ 283 (689)
++++..+|++|+++|+++++++.. .++.++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++||||
T Consensus 17 ~~~~~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~~~~G~D~ 96 (450)
T d1ffya3 17 RGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDT 96 (450)
T ss_dssp SCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBC
T ss_pred CCChHHHHHHHHHHHHHCCCccccccccCCCCcEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCcccccccccc
Confidence 579999999999999999976643 3456778999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHH
Q psy944 284 AGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILH 363 (689)
Q Consensus 284 ~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~ 363 (689)
||+||+.++++ .+..+.+++++++.+.|++|+..+++.+++++++||+++||+++|.|++|.|.+.++++|.+|+
T Consensus 97 ~G~pie~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~~f~~l~ 171 (450)
T d1ffya3 97 HGLPIEQALTK-----KGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMA 171 (450)
T ss_dssp CSHHHHHHHHH-----HTCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHh-----hCCccccccHHHHhhhcchhhhhhhhhHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHH
Confidence 99999987765 3677788999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeeecccccccCCCCcccCCCceeeeee
Q psy944 364 EAGDIYRSERLVHWSCSLKSAISDIEVDKVEL 395 (689)
Q Consensus 364 ~kGliy~~~~~v~w~~~~~t~ls~~ev~~~~~ 395 (689)
++|+||++.++|+|||.|+|+++++|+++...
T Consensus 172 ~~G~iy~~~~~v~~~p~~~~~~~~~e~~~~~~ 203 (450)
T d1ffya3 172 DKGLIYKGKKPVYWSPSSESSLAEAEIEYPHD 203 (450)
T ss_dssp HTTCEEEEEEEEEEETTTTEECCGGGEEEEEE
T ss_pred HcCCeeccccccccccccCccccccccccccc
Confidence 99999999999999999999999999987543
No 3
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=1.5e-35 Score=284.63 Aligned_cols=158 Identities=23% Similarity=0.327 Sum_probs=133.9
Q ss_pred CCceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccH
Q psy944 425 GSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRL 504 (689)
Q Consensus 425 ~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~ 504 (689)
.+.+++||||||||||||+||||||+++|+.. +.+++.++++..+.
T Consensus 18 ~~~~l~iwTTtPwTLp~n~avav~p~~~y~~~----------------------------------~~~~~~~~~~~~~~ 63 (179)
T d1udza_ 18 EKASLLIWTTTPWTLPGNVAAAVHPEYTYAAF----------------------------------QVGDEALILEEGLG 63 (179)
T ss_dssp SSEEEEEEESCGGGGGGCCEEEECTTSEEEEE----------------------------------EETTEEEEEEHHHH
T ss_pred CCceEEEEeCCcchhhcceeeecCCCCcceEE----------------------------------EEeechhhhhhhcc
Confidence 45799999999999999999999999887532 22345566666665
Q ss_pred HHHhhcccccccCcccccccccCceeecCcC---CCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeec
Q psy944 505 ETLFADVAVAVHPEDERYKHLVGKLLVHPFC---ERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVF 581 (689)
Q Consensus 505 e~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~---~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~i 581 (689)
+.+.+.... ...+.+|++|.|.+|.||+. ++.+||+.++||++++|||+||+|||||++||++|++||||++++|
T Consensus 64 ~~~~~~~~~--i~~~~~G~~l~g~~~~~p~~~~~~~~~pv~~ad~V~~~~GTG~Vh~aPahg~~D~~~~~k~gl~i~~~V 141 (179)
T d1udza_ 64 RKLLGEGTP--VLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTV 141 (179)
T ss_dssp HHHHCTTSC--EEEEEEGGGGTTCBBCCSSCCCCSSCCBEEECTTCCSSSSCSEEEECGGGCHHHHHHHHHTTCCCCCCB
T ss_pred ceeeeeeee--EEEEEecccceeeEEEeecccccccceeEEeccccCccccCcceeeeccCCHHHHHHHHhcCCCccccc
Confidence 555443221 12457899999999999985 4678999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCCCCchhhhHHHHHHHhhccccccCceeeeE
Q psy944 582 NEEGVIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVDK 624 (689)
Q Consensus 582 d~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~ 624 (689)
|++|+|+ .+.|+|+.++||+++|++.|+ ++|+|.+.+
T Consensus 142 d~~G~~~--~~~~~Gl~v~dA~~~Ii~~L~----~~g~L~~~e 178 (179)
T d1udza_ 142 DEEGKLL--VEPFKGLYFREANRAILRDLR----GRGFLFKEE 178 (179)
T ss_dssp CTTSBBC--STTCTTCBHHHHHHHHHHHHH----HHTCEEEEE
T ss_pred cCcceec--ccccCCCCHHHhHHHHHHHHH----HCCCEEeec
Confidence 9999998 578999999999999999999 999887654
No 4
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=5.8e-35 Score=268.19 Aligned_cols=134 Identities=48% Similarity=0.786 Sum_probs=120.6
Q ss_pred cccccCCCCceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceE
Q psy944 418 FAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEI 497 (689)
Q Consensus 418 ~~~~~~~~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 497 (689)
++|++.+ +.+++||||||||||||+||||||+++|
T Consensus 6 vkf~~~~-~~~i~i~TTrP~Tl~g~~avav~P~d~~-------------------------------------------- 40 (143)
T d1wkaa1 6 LRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDER-------------------------------------------- 40 (143)
T ss_dssp EEEEBTT-SCEEEEEESCGGGGGGCCEEEECTTCTT--------------------------------------------
T ss_pred EEEEeCC-CCEEEEEECCcchhcCceEEEEeccccc--------------------------------------------
Confidence 3455554 4589999999999999999999998653
Q ss_pred EEEeccHHHHhhcccccccCcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCc
Q psy944 498 VVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPL 577 (689)
Q Consensus 498 ~i~~~~~e~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i 577 (689)
+..|.|+.+.||++++.+||+.++||++++|||+||+|||||++||++|++||||+
T Consensus 41 ------------------------~~~l~g~~~~~p~~~~~vpi~~~~~V~~~~GTG~V~~aPaHd~~D~~~~~k~~L~~ 96 (143)
T d1wkaa1 41 ------------------------YRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKP 96 (143)
T ss_dssp ------------------------TGGGTTCEEECTTSSCEEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHTCCC
T ss_pred ------------------------cccccccceeecccceeeceeecccccccCCCCeEEEeccCChHHHHHHHhhcccc
Confidence 23577899999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCcccccCC--CCCCCCchhhhHHHHHHHhhccccccCceeeeE
Q psy944 578 ITVFNEEGVIIGDY--GEFTGMKRFDARTRVTELISLSISSQGLIKVDK 624 (689)
Q Consensus 578 ~~~id~~G~~~~~~--~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~ 624 (689)
+++||++|+|+++. +.|+||++++||++|++.|+ ++|++.+.+
T Consensus 97 ~~~i~~~G~~~~~~~~~~~~Gl~~~~A~~~Ii~~L~----~~gll~k~e 141 (143)
T d1wkaa1 97 VSVINLEGRMEGERVPEALRGLDRFEARRKAVELFR----EAGHLVKEE 141 (143)
T ss_dssp CCSBCTTSBBCSTTSCGGGTTSBHHHHHHHHHHHHH----HHTCEEEEE
T ss_pred cccccccceEeeecchHhhCCCcHHHHHHHHHHHHH----hCCCEEeee
Confidence 99999999999753 57999999999999999999 999987754
No 5
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=1.5e-34 Score=316.70 Aligned_cols=188 Identities=46% Similarity=0.816 Sum_probs=176.9
Q ss_pred CCCCCCchHHHHHHhhhccccccccccccccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCC
Q psy944 200 IPECGTDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNP 279 (689)
Q Consensus 200 l~~~~~~~~~~iE~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~ 279 (689)
||+ +|||..+|++|+++|++++++.. ++.++++|+|++|||||||+|||||+++++++|+++||+||+||+|++++
T Consensus 3 ~~~--~~~~~~~e~~~~~~w~~~~~~~~--~~~~~~~f~i~~~pPy~NG~lHlGH~~~yv~~Dv~~Ry~r~~G~~V~~v~ 78 (425)
T d1ivsa4 3 LPK--AYDPKSVEPKWAEKWAKNPFVAN--PKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLP 78 (425)
T ss_dssp CCS--SCCGGGTHHHHHHHHHSSCCCCC--TTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCC--CCChHHHHHHHHHHHHHCCcccC--CCCCCCcEEEEcCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCceeecC
Confidence 677 99999999999999999987765 46778899999999999999999999999999999999999999999999
Q ss_pred CcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHH
Q psy944 280 GCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAF 359 (689)
Q Consensus 280 G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f 359 (689)
|+|+||+||+.++++.+ ...+..+.+++++.+...|..++..+.+.|+++|++||+++||+.+++|+++.|.+.++++|
T Consensus 79 g~D~hG~~i~~~aek~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~d~~~~~~t~~~~~~~~~~~~~ 157 (425)
T d1ivsa4 79 GTDHAGIATQVVVERLL-LKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAF 157 (425)
T ss_dssp EEBCCTHHHHHHHHHHH-HTTTCCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHHhh-cccCCChHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcchhhcccchhhhhhhHHHH
Confidence 99999999999987654 45677888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeeeecccccccCCCCcccCCCceee
Q psy944 360 VILHEAGDIYRSERLVHWSCSLKSAISDIEVDK 392 (689)
Q Consensus 360 ~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~ 392 (689)
.+|.++|++|++.++++|||.|+++|++.+++.
T Consensus 158 ~~l~~~G~iy~~~~~~~~c~~~~~~l~~~~~~~ 190 (425)
T d1ivsa4 158 SRYYHEGLAYRAPRLVNWCPRCETTLSDLEVET 190 (425)
T ss_dssp HHHHTTSSEEEECCEEEEETTTTEECCGGGEEE
T ss_pred hhhhccCcccccceeeccccccccccccccccc
Confidence 999999999999999999999999999998864
No 6
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=100.00 E-value=2.9e-35 Score=287.50 Aligned_cols=161 Identities=27% Similarity=0.416 Sum_probs=133.1
Q ss_pred CceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCceEEEEeccHH
Q psy944 426 SGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLE 505 (689)
Q Consensus 426 ~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~e 505 (689)
+.++++|||||||||||++|||+|+.+|+..... ++..+++..+..
T Consensus 24 ~~~l~iwTTtPwTlp~n~alav~p~~~y~~~~~~----------------------------------~~~~~~~~~~~~ 69 (194)
T d1ffya2 24 DAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVN----------------------------------GEKYIIAEALSD 69 (194)
T ss_dssp TCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTT----------------------------------TTCCCCCHHHHH
T ss_pred CCeEEEecCCCchhhhhhheeeCCccccceeeee----------------------------------cchhhhhhhhhh
Confidence 5789999999999999999999999998653221 111222223333
Q ss_pred HHhhccc----ccccCcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCCCceeec
Q psy944 506 TLFADVA----VAVHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVF 581 (689)
Q Consensus 506 ~~~~~~~----~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l~i~~~i 581 (689)
.+..... ......+.+|.+|.|..+.+|+.++.+||+.++||++++|||+||+|||||++||++|+++|||++++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~p~~~~~~pv~~~d~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~V 149 (194)
T d1ffya2 70 AVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPI 149 (194)
T ss_dssp HHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCC
T ss_pred hhhhhhhhcceeeeeecccccccccCccccccccccccceeccceeecccCCcceeeecccCcchHHhHHHcCCccccee
Confidence 3322111 112245677899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCCCCchhhhHHHHHHHhhccccccCceeeeE
Q psy944 582 NEEGVIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVDK 624 (689)
Q Consensus 582 d~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~~ 624 (689)
|++|+|+++.++|+|+.+++|+++|++.|+ ++|++.+.+
T Consensus 150 d~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~----e~g~l~~~~ 188 (194)
T d1ffya2 150 DDKGVFTEEGGQFEGMFYDKANKAVTDLLT----EKGALLKLD 188 (194)
T ss_dssp CSSSCCCTTCSSCSSSCSSHHHHTTGGGSS----HHHHCCCCE
T ss_pred cccccccCCCCccCCcCHHHhHHHHHHHHH----HCCCEeccc
Confidence 999999999999999999999999999999 999776554
No 7
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.98 E-value=6.3e-34 Score=314.06 Aligned_cols=193 Identities=20% Similarity=0.267 Sum_probs=174.3
Q ss_pred CCCCCCchHHHHHHhhhcccccccccccc-ccCCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeC
Q psy944 200 IPECGTDALRFALAAYMSQGERTGRRKSI-GEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWN 278 (689)
Q Consensus 200 l~~~~~~~~~~iE~~~~~~W~~~~~~~~~-~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~ 278 (689)
+++++..|+..+|++|+++|++.+.++.. ..++++++|+|++|||||||.|||||+++++++|+++||+||+|++|+++
T Consensus 2 ~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~v~~Dv~~Ry~r~~G~~V~~v 81 (452)
T d1ilea3 2 FKEVGEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRR 81 (452)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCE
T ss_pred CccccCCCHHHHHHHHHHHHHHCCCccCCccccCCCCCEEEecCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCCceecc
Confidence 46678899999999999999999966544 34567889999999999999999999999999999999999999999999
Q ss_pred CCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHH
Q psy944 279 PGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEA 358 (689)
Q Consensus 279 ~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~ 358 (689)
+|+|+||+||+.++++......+........++|.+.|++++..+.+.+.+++.++|++.||.+++.|+++.|.+.++++
T Consensus 82 ~G~D~hG~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~~~ 161 (452)
T d1ilea3 82 AGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWS 161 (452)
T ss_dssp EEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHhhccccccchhHHHHHHHHHHHhhHHhhhhhhHHHHHhhhccccccchhhhcCChHHHHHHHHH
Confidence 99999999999999775433333344556678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeeeecccccccCCCCcccCCCceee
Q psy944 359 FVILHEAGDIYRSERLVHWSCSLKSAISDIEVDK 392 (689)
Q Consensus 359 f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~~ 392 (689)
|.+|+++|+||++..+++||+.|++.+++.+++.
T Consensus 162 f~~l~~~G~iy~~~~~~~~~~~~~~~~~~~~~~~ 195 (452)
T d1ilea3 162 LKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVAL 195 (452)
T ss_dssp HHHHHHTTCEEEECCEEEEETTTTEECCHHHHHH
T ss_pred HHHHHhcCCcccccccchhhcccccccccccccc
Confidence 9999999999999999999999999999988753
No 8
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.97 E-value=3.9e-33 Score=271.70 Aligned_cols=169 Identities=24% Similarity=0.381 Sum_probs=129.8
Q ss_pred ccccccCCCCceEEEeeccCccccccchhhcCCCchhhhhhhhhhhccCCCCCCCCCCCCCcccceeeeEeEEeecCCce
Q psy944 417 SFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGE 496 (689)
Q Consensus 417 ~~~~~~~~~~~~l~~~Tt~P~Tl~~n~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 496 (689)
.+.|++.+.+.+|+||||||||||||+||||||+++|+....... .
T Consensus 6 ~V~F~v~~~~~~l~iwTTtPwTlpgn~avav~p~~~y~~~~~~~~----------------------------------~ 51 (192)
T d1h3na2 6 EILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPE----------------------------------K 51 (192)
T ss_dssp EEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHTSCGG----------------------------------G
T ss_pred EEEEEecCCCcEEEEEeCCcchhhhccEEEECCchhHHHHHhhcc----------------------------------c
Confidence 345667777789999999999999999999999999986432110 0
Q ss_pred EEEEeccHHHHhhccc-ccccCcccccccccCceeecCcCCCceeeeeCCcccccCCCcceEeCCCCCHHHHHHHHHcCC
Q psy944 497 IVVATTRLETLFADVA-VAVHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNL 575 (689)
Q Consensus 497 ~~i~~~~~e~~~~~~~-~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTGiV~~~Pah~~~D~~~~~~~~l 575 (689)
......+.+....... ........++..+.+..+.||++++.+||+.++||+++.|||+||+|||||++||.+|++|||
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~vpv~~a~~V~~d~GTG~Vh~aPahg~~D~~~~~k~~l 131 (192)
T d1h3na2 52 REEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL 131 (192)
T ss_dssp HHHHHHHHHHHHHSCHHHHTCSSCCCCCEEEEEEEECTTTCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTC
T ss_pred hhHHHHHHHHhhhccchhhhhhhheeeccccceeeecCCCCCEEEEEeecccccccccceEEEecccCcccceeeccccc
Confidence 0000011111111100 011122334557788999999999999999999999999999999999999999999999999
Q ss_pred CceeeccCCccccc--------------CCCCCCCCchhhhHHHHHHHhhccccccCceeee
Q psy944 576 PLITVFNEEGVIIG--------------DYGEFTGMKRFDARTRVTELISLSISSQGLIKVD 623 (689)
Q Consensus 576 ~i~~~id~~G~~~~--------------~~~~~~G~~v~~a~~~i~~~L~~~~~~~g~~~~~ 623 (689)
|++++||.+|.+.. +++.|+||+++||+++|++.|+ ++|+.+.+
T Consensus 132 p~~~vi~~~g~~~~~~~~~~~~~~g~~~ns~~~~Gl~v~~A~~~Ii~~L~----~~glg~~~ 189 (192)
T d1h3na2 132 PIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLE----EKGLGKGR 189 (192)
T ss_dssp CCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHHHHHH----HHTSEEEE
T ss_pred cccccccccccccccccccccccCceEecccccCCCcHHHHHHHHHHHHH----HCCCccce
Confidence 99999998887653 3578999999999999999999 99987654
No 9
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=99.94 E-value=8.7e-29 Score=272.42 Aligned_cols=176 Identities=23% Similarity=0.349 Sum_probs=126.7
Q ss_pred HHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHH-
Q psy944 2 AEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAE- 80 (689)
Q Consensus 2 ~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 80 (689)
++.++++++ .+.+.|+..+.++..|+++++||||||||+||+|||+|+|..+.....++.......+....+.....
T Consensus 226 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dw~iSRqr~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (450)
T d1ffya3 226 RQDILDAIE--NTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFE 303 (450)
T ss_dssp HHHHHHHHH--TSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHH
T ss_pred cccchhhcc--cccccccccceeeeccccCccchheeeecccccCcceeecCCCCEecchhhhHHHHHhhhhcCcccccc
Confidence 567788888 67899999999999999999999999999999999999987554332211111000000000000000
Q ss_pred --H-H-hhhcc-ccccCCccccccccccccccccCCcceeee------cCCcccccccc--------------------C
Q psy944 81 --Q-K-AISKF-NVTQADISLRQDEDVLDTWFSSGLFPFSVF------GWPDKQRLSAN--------------------G 129 (689)
Q Consensus 81 --~-~-~~~~~-~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~------~wp~~~~l~~~--------------------~ 129 (689)
. . ....+ .+..++..+.+++|++|+||+|+++++..+ .||++..+.|. .
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~dvld~wfds~~~~~~~~~~~~~~~~P~d~~~~G~Di~r~w~~~~~~~~~~~~~~~ 383 (450)
T d1ffya3 304 REAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVS 383 (450)
T ss_dssp SCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSC
T ss_pred ccccccccccccccCCCCCcceeeeeeecccccccccccccccccccccCCCcccccCcchhhHHHHHHHHHHHHhcCCC
Confidence 0 0 00011 112234568899999999999999887665 45666544333 3
Q ss_pred cCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 130 IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 130 ~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
+|++|++||+++|.+|+|||||+||+|+|.+++++||+|+|||||+++++
T Consensus 384 Pfk~v~~hG~vld~~G~KMSKS~GN~I~p~dii~~yGaDalR~~l~s~~~ 433 (450)
T d1ffya3 384 PYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDY 433 (450)
T ss_dssp SBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSCT
T ss_pred CcceEEEcceEECCCCCCCCCCCCCCcCHHHHHHHhCcHHHHHHHHcCCC
Confidence 58999999999999999999999999999999999999999999986543
No 10
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=99.88 E-value=2.1e-23 Score=221.45 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=123.6
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHH
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIE 314 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~ 314 (689)
++|+|+.|||||||+|||||+++++++|+++||+|++||+|.+++|+|+||.+|+.++.+ .|.++
T Consensus 2 ~~~~i~~~~P~~nG~lHiGHar~~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~-----~g~~~---------- 66 (350)
T d1pfva2 2 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ-----LGITP---------- 66 (350)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-----HTSCH----------
T ss_pred CeEEEeCCCCCCCCCccccccHHHHHHHHHHHHHHhcCCceEecCccCCccHHHHHHHHH-----cCCCH----------
Confidence 689999999999999999999999999999999999999999999999999999988764 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCce
Q psy944 315 KVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEV 390 (689)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev 390 (689)
.+++..+...+.++++.||+ ||...+.|.++.+.+.++++|.+|.++|++|++...++||+.|+++|++.++
T Consensus 67 --~~~~~~~~~~~~~~~~~l~i--~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~l~d~~~ 138 (350)
T d1pfva2 67 --EQMIGEMSQEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFV 138 (350)
T ss_dssp --HHHHHHHHHHHHHHHHHTTC--CCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGT
T ss_pred --HHHHHhHHHHHHHHHHHcCC--CcccCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCCCeEcCCcee
Confidence 24566778889999999886 5558899999999999999999999999999999999999999999998765
No 11
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.86 E-value=1.7e-22 Score=220.05 Aligned_cols=164 Identities=38% Similarity=0.709 Sum_probs=122.9
Q ss_pred HHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHHHH
Q psy944 3 EKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAEQK 82 (689)
Q Consensus 3 ~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (689)
+.+....+++...|.|+..+..+..|++.++||+|||++.||+|+|++++..+.....+........+.
T Consensus 215 ~~~~~~~~~~~~~~~pe~~~~~~~~~~~~l~d~~isr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 283 (425)
T d1ivsa4 215 EEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPT----------- 283 (425)
T ss_dssp HHHHHHHHHTCCEESSSTHHHHHHHHHHTCCCEECEECCSSSCCCCCEEETTTCCEECCCGGGTTCCCC-----------
T ss_pred ccchhhhhcCCcceeccccceeeehhhhhcCcceeecccccCCccceeeccCcceeecCcccccccccc-----------
Confidence 445566677788999999999999999999999999999999999999887554322211111000000
Q ss_pred hhhccccccCCccccccccccccccccCCcceeeecCCc-----------cccccccC--------------------cC
Q psy944 83 AISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPD-----------KQRLSANG--------------------IH 131 (689)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp~-----------~~~l~~~~--------------------~~ 131 (689)
.+.. .....+....+++++||+|+++++...+||. +....|.+ ++
T Consensus 284 ~~~~----~~~~~~~~~~~v~~~~~da~~~~~~~~~~~~~~~~~~~~~p~di~~~G~Di~~~h~~~~~a~~~~~~~~~p~ 359 (425)
T d1ivsa4 284 SCEA----CGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPF 359 (425)
T ss_dssp SCTT----TCCSCEEECCCEECHHHHHTSCTTTTTTTTTTCSHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSB
T ss_pred cccc----ccCccccccCccccccccchhHHHHhhCCCcChHHHhCCCCceEEEEEehhhhHHHHHHHHHHHHhcCCCcc
Confidence 0001 1223466778899999999999887765543 32222322 46
Q ss_pred ceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCchh
Q psy944 132 SEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 132 k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
++|++||++++.+|+|||||+||+|+|.+++++||+|++||||++.+|..
T Consensus 360 ~~v~~hg~~L~~~G~KMSKS~Gn~I~~~e~l~~~g~D~lR~~L~~~~~~~ 409 (425)
T d1ivsa4 360 KTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGG 409 (425)
T ss_dssp SEEEEECCEECTTSSBCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTT
T ss_pred ceEEEcceEECCCCCCcCCCCCCCcCHHHHHHHcCchHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999877753
No 12
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.85 E-value=7.3e-23 Score=224.79 Aligned_cols=176 Identities=23% Similarity=0.438 Sum_probs=118.1
Q ss_pred HHHHHHHHhcCCceEEcccc-HHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCccccc-----ceeecCCC
Q psy944 2 AEKAVQAVKTGELKIIPDHH-TKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEY-----ELWVSGRS 75 (689)
Q Consensus 2 ~~~~~e~i~~~~~~~~P~~~-~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~-----~~~~~~~~ 75 (689)
++.+.+.+. ...+.|... ..++..|+++++|||||||+.||+|+|++++........+..+... ..+.....
T Consensus 223 ~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~l~dw~IsR~~~wg~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (452)
T d1ilea3 223 KDELIRNNQ--EIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFD 300 (452)
T ss_dssp HHHHHHHHH--HSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCC
T ss_pred hhhhhhhhc--ccccCcchhhhceeeeeccCCccceeecccccccCCccccccccCcccccchhhhhhhhhccccCcccc
Confidence 456666666 335677765 4677899999999999999999999999988754422211111000 00000000
Q ss_pred hHHHHHHhhhccccccCCccccccccccccccccCCcceeeecCC------------ccccc------------------
Q psy944 76 KEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWP------------DKQRL------------------ 125 (689)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~wp------------~~~~l------------------ 125 (689)
.... ....... ...+...+.+..+++|+|++|+++++....++ ++...
T Consensus 301 ~~~~-~~~~~~~-~~~~~~~~~~~~~v~~~w~~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~d~~~~~fh~l~~~~~ 378 (452)
T d1ilea3 301 PHRP-YVDQVEL-ACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGV 378 (452)
T ss_dssp CSHH-HHTTCEE-ECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHH
T ss_pred cccc-ccccccc-cccccccccccccccccccccccchhhhccCccchhhhcccCCcchhheecCceechhhHHHHHhHH
Confidence 0000 0000011 11233457788999999999988776665433 33221
Q ss_pred --cccCcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCchh
Q psy944 126 --SANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 126 --~~~~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
.+..+|++|++||++++.+|+|||||+||+|+|.+++++||+|+|||||++++|..
T Consensus 379 l~~~~~~~~~v~~hg~iL~~~G~KMSKS~gn~I~~~dll~~ygaD~lR~yl~~~~~~~ 436 (452)
T d1ilea3 379 MLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPE 436 (452)
T ss_dssp HHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSS
T ss_pred HHcCCCCCCeEEEeeEEECCCCcccCCCCCCCcCHHHHHHHcCcHHHHHHHHhcCCCC
Confidence 22335899999999999999999999999999999999999999999999876643
No 13
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.85 E-value=1.2e-21 Score=207.12 Aligned_cols=139 Identities=24% Similarity=0.339 Sum_probs=124.4
Q ss_pred CCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHH
Q psy944 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFI 313 (689)
Q Consensus 234 ~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~ 313 (689)
+++|+|+.|||||||+|||||+|+++++|+++||+|++||+|.+++|+|++|.+|+..+.+. |..+
T Consensus 2 ~~~~~~~~~~PypnG~lHiGH~r~~v~~D~l~R~lr~~G~~V~~v~g~D~~g~~i~~~a~~~-----g~~~--------- 67 (348)
T d2d5ba2 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA-----GEDP--------- 67 (348)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHH-----TSCH---------
T ss_pred CCCEEEecCCCCCCCCcccccCHHHHHHHHHHHHHHhcCCCeEecCcCCCCCHHHHHHHHHc-----CCCH---------
Confidence 46799999999999999999999999999999999999999999999999999999887652 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCcee
Q psy944 314 EKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVD 391 (689)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev~ 391 (689)
.+++..+...+++.++.+|+..| .++.+..+.+...++.++.++.++|++|++...+.||+.|++++...++.
T Consensus 68 ---~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (348)
T d2d5ba2 68 ---KAFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV 140 (348)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB
T ss_pred ---HHhhhhHHHHHHHHHHhcCcccc--ceeecccchhhHHHHHHHHHHHhhCccccccccccccccccceecccccc
Confidence 24566777889999999998877 56778889999999999999999999999999999999999999888764
No 14
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Probab=99.82 E-value=7.9e-21 Score=201.73 Aligned_cols=137 Identities=20% Similarity=0.202 Sum_probs=121.4
Q ss_pred CceeecCCCCCCCccchhHHHHH-HHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHH
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALT-NAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFI 313 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~-~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~ 313 (689)
.+|+|+.|||||||.|||||+++ ++.+|+++||+||.||+|++++|+|+||++|+.+|++. |.++
T Consensus 2 ~~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~-----g~~~--------- 67 (361)
T d1rqga2 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE-----GRSP--------- 67 (361)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH-----TCCH---------
T ss_pred ceEEEecCCCCCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHHHHHc-----CCCH---------
Confidence 57999999999999999999775 68899999999999999999999999999999888652 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeecccccccCCCCcccCCCce
Q psy944 314 EKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEV 390 (689)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~~~~~t~ls~~ev 390 (689)
.++++.+...+.+++..+++..+ ..+.|.++.+...++++|..++++|++|++..+++||+.|++.++....
T Consensus 68 ---~~~~~~~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (361)
T d1rqga2 68 ---REIVDEFHEQIKITFQRAKISFD--FFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFA 139 (361)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGT
T ss_pred ---HHHHHHHHHhhcccccccccccc--cccccccchhhhhhhhhhhhccccCceeeeeeeeecccccceecccccc
Confidence 24577778889999999887666 7888999999999999999999999999999999999999998877654
No 15
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Probab=99.76 E-value=1.5e-20 Score=199.53 Aligned_cols=169 Identities=14% Similarity=0.114 Sum_probs=106.5
Q ss_pred CHHHHHHHHhcCCceEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCCcccccceeecCCChHHHH
Q psy944 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAE 80 (689)
Q Consensus 1 ~~~~~~e~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (689)
+++.+++.+. ...+.|+..+.....+.+++.|||||||++||+|+|+|+++.++... ..|..........
T Consensus 160 ~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~isr~~~wg~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~ 229 (361)
T d1rqga2 160 FAERLKRWIE--KQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVL--------YVWFEAPIGYISI 229 (361)
T ss_dssp THHHHHHHHH--SSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEE--------CHHHHGGGHHHHH
T ss_pred hhhhhhhccc--ccccccchhhhhhhccccccccccccccccccccCccccccCCCeEE--------Eeecccccccccc
Confidence 4567888888 56788887777766666679999999999999999988654333211 1222221111000
Q ss_pred -HHhhh--ccccccCCccccccccc-cccccccCCcceeeecCCccccc----------cccCcCceEEEcceeeCCCCc
Q psy944 81 -QKAIS--KFNVTQADISLRQDEDV-LDTWFSSGLFPFSVFGWPDKQRL----------SANGIHSEVFLHPIVRDAHGR 146 (689)
Q Consensus 81 -~~~~~--~~~~~~~~~~~~~~~dv-~D~Wf~S~~~~~~~~~wp~~~~l----------~~~~~~k~v~~hg~~~~~~g~ 146 (689)
..... .+.............++ ..++++.++.+++...|++.... ....+|+.+++||+++ .+|+
T Consensus 230 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~-~~G~ 308 (361)
T d1rqga2 230 TIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLT-LEGK 308 (361)
T ss_dssp HHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEE-ETTE
T ss_pred cccCcccCCchhHHHHhhhhccCCcceEEeccccccccchhhHHHHHHHhhccccccccccCCCCCEEEEeeeEE-eCCE
Confidence 00000 00000000001111122 22456666666655555443221 1234589999999997 6799
Q ss_pred eeeeccCCccCchhhhhcCChhhHHHHHhhcCch
Q psy944 147 KMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180 (689)
Q Consensus 147 KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~~ 180 (689)
|||||+||+|+|.+++++||+|+|||||++.+|.
T Consensus 309 KMSKSlGN~I~~~d~i~~yg~D~lR~~l~~~~p~ 342 (361)
T d1rqga2 309 KFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPE 342 (361)
T ss_dssp ECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCS
T ss_pred ecCCCCCCCCCHHHHHHHcCcHHHHHHHHhhCCC
Confidence 9999999999999999999999999999987663
No 16
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.65 E-value=1.1e-17 Score=184.96 Aligned_cols=166 Identities=22% Similarity=0.249 Sum_probs=105.6
Q ss_pred eEEccccHHHHHHHHccCCCeecccCCccccccceEEEeCCCCCCCCC-----ccccc----ceeecCCChHHHHHHhhh
Q psy944 15 KIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPK-----NVTEY----ELWVSGRSKEEAEQKAIS 85 (689)
Q Consensus 15 ~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~y~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~ 85 (689)
...|...+++..+|++++.||+|||++.||+++|++++..+.....+. .+... .....+.+.-+..... .
T Consensus 210 ~~~~~~~~~~~~~~i~~l~d~~Isr~~~~~~~i~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~~~~~-~ 288 (494)
T d1h3na3 210 LNWPEKVKAMQRAWIGRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEF-Y 288 (494)
T ss_dssp CBSCHHHHHHHHHHHCSCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHH-H
T ss_pred cccccccccccccccccccccccccccccccceEEEeeccceeecccccchhcccccccccccCCCcCCChhHhCcce-e
Confidence 345778899999999999999999999999999999876543211111 01000 0000000000001111 1
Q ss_pred ccccccCCccccccccccccccccCCcceeeecC----------------Cccccc------------------------
Q psy944 86 KFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGW----------------PDKQRL------------------------ 125 (689)
Q Consensus 86 ~~~~~~~~~~~~~~~dv~D~Wf~S~~~~~~~~~w----------------p~~~~l------------------------ 125 (689)
...++..+....++.+++++||++++.++....| |.+...
T Consensus 289 ~~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (494)
T d1h3na3 289 ETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLG 368 (494)
T ss_dssp EEECTTTCSEEEECCCEECHHHHTTSHHHHTTSTTCSSSSSCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTT
T ss_pred eeecccCCCceEEeceecccceeecchhhhhcccccccccccccccccccCceecccccceeeeeeecccchhhhhhccc
Confidence 1112233445677788899999988775554322 111000
Q ss_pred -----------cc--------------------------------------------cCcCceEEEcceeeCCCCceeee
Q psy944 126 -----------SA--------------------------------------------NGIHSEVFLHPIVRDAHGRKMSK 150 (689)
Q Consensus 126 -----------~~--------------------------------------------~~~~k~v~~hg~~~~~~g~KmSK 150 (689)
.. ...+..+..||+++|.+|+||||
T Consensus 369 ~~~~~~~~k~~~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~d~~g~KMSK 448 (494)
T d1h3na3 369 MVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSK 448 (494)
T ss_dssp SCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECCT
T ss_pred ccccchhcccccccCcEecCcccccccccccccccCCcceeeeeccccccchhhhhcccccccccCCccEEeCCceeCCC
Confidence 00 00123444578888889999999
Q ss_pred ccCCccCchhhhhcCChhhHHHHHhhcCchh
Q psy944 151 SLGNVIDPLDVVKGISLAGLQGRLLQDSNLE 181 (689)
Q Consensus 151 S~gn~~~~~~~~~~~~~d~~r~~l~~~~~~~ 181 (689)
|+||||+|.++|++||+|+||||||+++|+.
T Consensus 449 SlGNVIdP~~iI~~YGADalRl~ll~~s~~g 479 (494)
T d1h3na3 449 SKGNGVMVGPFVKEQGADIARITILFAAPPE 479 (494)
T ss_dssp TTTCCCBHHHHHHHSCHHHHHHHHHHHSCTT
T ss_pred CCCCcCCHHHHHHHhCHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999888764
No 17
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=99.51 E-value=3.7e-16 Score=164.86 Aligned_cols=160 Identities=19% Similarity=0.291 Sum_probs=96.0
Q ss_pred HHHHHHHHhcCCceEEccccHHHHHHHH-ccCCCeecccCC-ccccccceEEEeCCCCCCCCCcccccceeecCCChHH-
Q psy944 2 AEKAVQAVKTGELKIIPDHHTKTWYQWL-ENNRDWCISRQL-WWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEE- 78 (689)
Q Consensus 2 ~~~~~e~i~~~~~~~~P~~~~~~~~~~l-~~l~DW~ISRqr-~WG~pIP~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (689)
++.+.+.++.+ . .|+..+++...++ ++++|||+||++ +||+++|. .++ .. ...|..+.....
T Consensus 160 ~~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~----~~~------~~--~~~~~~~~~~~~~ 224 (350)
T d1pfva2 160 SEMLQAWTRSG--A-LQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPN----APG------KY--FYVWLDAPIGYMG 224 (350)
T ss_dssp HHHHHHHHTTS--C-SCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTT----CTT------EE--ECHHHHHHHHHHH
T ss_pred HHHHHHHhhcC--C-CchhhHHHHHHHhhccCCccccccccccCCccccC----CCC------cc--cccccccccchhh
Confidence 45667777754 3 3555566655544 569999999997 55888771 000 00 001111100000
Q ss_pred HHHHhhhccccccCCcc--ccccccccccccccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeeeccCCcc
Q psy944 79 AEQKAISKFNVTQADIS--LRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSLGNVI 156 (689)
Q Consensus 79 ~~~~~~~~~~~~~~~~~--~~~~~dv~D~Wf~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSKS~gn~~ 156 (689)
.........+.+..... .........+..+.++.++|...+++........+++++++|||++ .+|+|||||+||+|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~G~D~~~~h~~~~~~~~~a~~~~~~~~~~~~g~l~-~~G~KMSKS~GN~i 303 (350)
T d1pfva2 225 SFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVT-VNGAKMSKSRGTFI 303 (350)
T ss_dssp HHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEE-ETTBSCCTTTTCCC
T ss_pred hhhccccccccchhhhhccccCCCcceeeccchhhHHHHHhhHHHHhhhcCCCccceEEecccEE-ECCeEccCcCCCCC
Confidence 00000011000000000 0001112234556777777766666664555666789999999998 78999999999999
Q ss_pred CchhhhhcCChhhHHHHHhhc
Q psy944 157 DPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 157 ~~~~~~~~~~~d~~r~~l~~~ 177 (689)
+|.+++++||+|++||||++.
T Consensus 304 ~~~dll~~~g~D~lR~~l~s~ 324 (350)
T d1pfva2 304 KASTWLNHFDADSLRYYYTAK 324 (350)
T ss_dssp BHHHHHHHSCHHHHHHHHHHH
T ss_pred CHHHHHHHCCHHHHHHHHHhh
Confidence 999999999999999999974
No 18
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}
Probab=99.48 E-value=6.1e-14 Score=145.60 Aligned_cols=126 Identities=10% Similarity=-0.002 Sum_probs=100.2
Q ss_pred CCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHH
Q psy944 231 KNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGRE 310 (689)
Q Consensus 231 ~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~ 310 (689)
+.++.++++| | |+|||.+||||+|+++++|+++||+++.|++|.+.+|+|+||.++...+++ .+..+
T Consensus 19 ~~~~~~~yv~-G-ptv~g~~HIGH~R~av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~-----~~~~~------ 85 (315)
T d1li5a2 19 HAGEVGMYVC-G-ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANE-----NGESF------ 85 (315)
T ss_dssp STTEEEEEEC-C-CBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHH-----TTCCH------
T ss_pred CCCeEEEEec-C-CcCCCCcccchhHHHHHHHHHHHHHHHcCCcEEEEecccchhHHHHHHHhh-----hhhcc------
Confidence 4455667775 6 599999999999999999999999999999999999999999999887764 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeeeccccccc
Q psy944 311 KFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWS 378 (689)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~~~~v~w~ 378 (689)
.++++.+...+.+.+.++++..+ ..+.+. ..+...+...+.+|.++|.+|....-..||
T Consensus 86 ------~e~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~ 144 (315)
T d1li5a2 86 ------VAMVDRMIAEMHKDFDALNILRP--DMEPRA-THHIAEIIELTEQLIAKGHAYVADNGDVMF 144 (315)
T ss_dssp ------HHHHHHHHHHHHHHHHHTTCCCC--SBCCBG-GGCHHHHHHHHHHHHHTTSEEECTTSCEEE
T ss_pred ------ccccccchhhhhhhHHhcCCCCC--cEEEec-chhhhhhhhHHHHhhccCceeccccceEEe
Confidence 34566777889999999999776 333333 456677788899999999999877655554
No 19
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.37 E-value=1.2e-13 Score=144.84 Aligned_cols=72 Identities=24% Similarity=0.390 Sum_probs=56.4
Q ss_pred ccCCcceeeecCCccccccccCcCceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 108 SSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 108 ~S~~~~~~~~~wp~~~~l~~~~~~k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
+++...++...++......+..+++.|++||++++.+|+|||||+||+|++.+++++||+|+|||||++..|
T Consensus 258 g~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~G~KMSKS~Gn~i~~~ell~~~g~D~lR~~l~~~~p 329 (348)
T d2d5ba2 258 GKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIP 329 (348)
T ss_dssp EGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSC
T ss_pred hhhccchhhhhhhhhccccccCCCCEEEeCceEEcccCCCCcCCCCcccCHHHHHHHCCcHHHHHHHHhcCC
Confidence 344443333333333333455678999999999999999999999999999999999999999999997654
No 20
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.08 E-value=2e-10 Score=120.24 Aligned_cols=143 Identities=10% Similarity=0.109 Sum_probs=101.2
Q ss_pred CCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHH----------------
Q psy944 233 PKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKL---------------- 296 (689)
Q Consensus 233 ~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l---------------- 296 (689)
.+++.+|-..=|||+|+||+||+|+.+++|+++|..+..||+|...+..++.|.++...+..-.
T Consensus 6 ~~kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~l 85 (348)
T d1f7ua2 6 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHL 85 (348)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHH
T ss_pred CCCEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHHHhccccccccccchhH
Confidence 3456777788899999999999999999999999999999999999999999998765432100
Q ss_pred H-------HHhcccccc------c-------------CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChh
Q psy944 297 W-------REEKKTRHE------I-------------GREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPK 350 (689)
Q Consensus 297 ~-------~~~~~~~~~------~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~ 350 (689)
. +........ + +..+..+.....++...+.+++.+.+||+.+| ..+..++ .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~fD--~~~~Es~-~ 162 (348)
T d1f7ua2 86 FDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYD--VYSGESQ-V 162 (348)
T ss_dssp HHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCS--EEEEGGG-C
T ss_pred HHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhhccc-c
Confidence 0 000000000 0 01122233344556667889999999999999 3344433 3
Q ss_pred hHHHHHHHHHHHHHcCCeeeeccccccc
Q psy944 351 LSRAVTEAFVILHEAGDIYRSERLVHWS 378 (689)
Q Consensus 351 ~~~~v~~~f~~L~~kGliy~~~~~v~w~ 378 (689)
+......+...|.++|++|.....+.++
T Consensus 163 ~~~~~~~v~~~L~~~~~~~~~~ga~~~~ 190 (348)
T d1f7ua2 163 SKESMLKAIDLFKEKGLTHEDKGAVLID 190 (348)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETTEEEEE
T ss_pred cccchHHHHHHHHhhccccccCCccccc
Confidence 4445567899999999999988766654
No 21
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.03 E-value=1.9e-11 Score=124.58 Aligned_cols=59 Identities=19% Similarity=0.100 Sum_probs=52.6
Q ss_pred CCCCCceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHH
Q psy944 231 KNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQV 290 (689)
Q Consensus 231 ~~~~~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~ 290 (689)
...++++++. .+|||||+|||||+|+++++|+++||+|+.|++|.+..|+|++|.++..
T Consensus 14 ~~~k~~~v~~-~~~~PnG~lHIGHlr~~i~gD~laR~lr~~G~~V~~~~~~dd~g~~~~~ 72 (317)
T d1irxa2 14 RGEKEKYVVE-SGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKV 72 (317)
T ss_dssp SCCCSEEEEE-EEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCC
T ss_pred cCCCCeEEEE-CCCCCCCCccccccHHHHHHHHHHHHHHHcCCCEEEEEEeccCcchhhh
Confidence 4456677777 5789999999999999999999999999999999999999999987643
No 22
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
Probab=98.83 E-value=3.8e-09 Score=111.21 Aligned_cols=136 Identities=16% Similarity=0.161 Sum_probs=94.4
Q ss_pred CceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhc-------------
Q psy944 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEK------------- 301 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~------------- 301 (689)
++.+|-..-|||+|++|+||+|+.+++|+++|..+..||+|.......+.|.++-..+.........
T Consensus 7 ~~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (370)
T d1iq0a2 7 GVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGR 86 (370)
T ss_dssp EEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHH
T ss_pred CeEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHcCCEEEEEEeECCchHHHHHHHHHHHHhccccccccchhhhhhh
Confidence 4567777889999999999999999999999999999999999999999999875433211000000
Q ss_pred --------ccccccCH--HHHHH-----HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcC
Q psy944 302 --------KTRHEIGR--EKFIE-----KVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAG 366 (689)
Q Consensus 302 --------~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kG 366 (689)
.....+.. ++... ..++-.......+++++.++|+.+| ..+..++-.+...+..++..|.++|
T Consensus 87 ~y~~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~fD--~~~~Es~l~~~~~~~~~i~~l~~~~ 164 (370)
T d1iq0a2 87 AYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYD--LLVWESDIVRAGLLQKALALLEQSP 164 (370)
T ss_dssp HHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCS--EEEEHHHHHHTTHHHHHHHHHTTST
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccceeec--eeeeecccccccchhhhHhhhhhcc
Confidence 00000000 00000 0122233455667889999999888 5566555556678889999999999
Q ss_pred Ceeeec
Q psy944 367 DIYRSE 372 (689)
Q Consensus 367 liy~~~ 372 (689)
.+|+..
T Consensus 165 ~~~~~~ 170 (370)
T d1iq0a2 165 HVFRPR 170 (370)
T ss_dssp TEECCS
T ss_pred ceeecc
Confidence 999765
No 23
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}
Probab=98.73 E-value=6.5e-10 Score=114.59 Aligned_cols=46 Identities=30% Similarity=0.348 Sum_probs=40.7
Q ss_pred CceEEEc-ceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhhc
Q psy944 131 HSEVFLH-PIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 131 ~k~v~~h-g~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
+..+++| |+++ .+|+|||||+||+|+|+++++.+|+|++||||++.
T Consensus 250 ~~~~~~~~~~l~-~~G~KMSKs~Gn~V~~~dlle~~g~D~lRy~lls~ 296 (315)
T d1li5a2 250 YVNYWMHSGMVM-VDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSG 296 (315)
T ss_dssp CEEEECCBCCEE-ETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSS
T ss_pred cccEEEEEEEEe-cCCcEecCcCCCcccHHHHHHhCCHHHHHHHHHcC
Confidence 4456666 7777 79999999999999999999999999999999974
No 24
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=98.31 E-value=8.6e-08 Score=96.71 Aligned_cols=48 Identities=21% Similarity=0.111 Sum_probs=32.8
Q ss_pred ceEEEcceee-CCCCceeeeccCCccCchhhhhcCChhhHHHHHhhcCc
Q psy944 132 SEVFLHPIVR-DAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSN 179 (689)
Q Consensus 132 k~v~~hg~~~-~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~~~ 179 (689)
..++.||+++ +.+|.|||||+||+|+++++++.+++|++||++|+..|
T Consensus 261 ~~~~~~~~l~l~ge~~KMSkrkGn~I~~~dll~~~~~d~~Ry~~l~~~~ 309 (317)
T d1irxa2 261 PLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRP 309 (317)
T ss_dssp CBCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCT
T ss_pred cEEEEEEEEEECCccccccCCCCccccHHHHHHHCCHHHHHHHhcCCCC
Confidence 3457899886 23566999999999999999999999999999998765
No 25
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}
Probab=97.95 E-value=5.8e-06 Score=83.90 Aligned_cols=99 Identities=20% Similarity=0.163 Sum_probs=68.6
Q ss_pred ecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHH
Q psy944 239 MVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWE 318 (689)
Q Consensus 239 i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ 318 (689)
||==+|.|||+||+||++++++...+|| ...|.-+++ +|+.-.+-+
T Consensus 3 vtRfaPsPtG~lHiG~~rtal~n~~~Ak--~~~G~~iLR---idDtD~~R~----------------------------- 48 (305)
T d1j09a2 3 VTRIAPSPTGDPHVGTAYIALFNYAWAR--RNGGRFIVR---IEDTDRARY----------------------------- 48 (305)
T ss_dssp EEEECCCCSSSCBHHHHHHHHHHHHHHH--HTTCEEEEC---BCCCCTTSC-----------------------------
T ss_pred EEecCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEE---eCcCCCccC-----------------------------
Confidence 4444799999999999999999999999 446655554 454432200
Q ss_pred HHHHHHHHHHHHHHHhccccccCC-----ccccCChhhHHHHHHHHHHHHHcCCeeeec
Q psy944 319 WKKEKGDRIYEQMKLMGSSLDWDR-----ACFTMDPKLSRAVTEAFVILHEAGDIYRSE 372 (689)
Q Consensus 319 ~~~~~~~~~~~~l~~lGi~~Dw~~-----~~~T~d~~~~~~v~~~f~~L~~kGliy~~~ 372 (689)
...+.+.|.++|+.||+..|-.- .-.....++.......+.+|.++|++|...
T Consensus 49 -~~~~~~~I~~dL~wLgi~wD~~p~~~~~~~~~~qS~r~~~y~~~~~~Li~~g~aY~C~ 106 (305)
T d1j09a2 49 -VPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAF 106 (305)
T ss_dssp -CTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEEC
T ss_pred -chHHHHHHHHHHHHHhcCcccCCcCCCCCcceeeecchhHHHHHHHHHHHcCCeeecc
Confidence 11245778999999997665210 011223466778889999999999999753
No 26
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}
Probab=97.47 E-value=0.00016 Score=72.14 Aligned_cols=92 Identities=22% Similarity=0.258 Sum_probs=63.7
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHH
Q psy944 242 PPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKK 321 (689)
Q Consensus 242 ~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (689)
=+|.|||+||+||++++++.=.+|| +..|.-+++ +|+.-.+- . ..
T Consensus 7 FAPsPtG~lHiG~~rtal~n~~~Ak--~~~G~~iLR---ieDtD~~R-------------~-----------------~~ 51 (286)
T d1nzja_ 7 FAPSPSGELHFGSLIAALGSYLQAR--ARQGRWLVR---IEDIDPPR-------------E-----------------VP 51 (286)
T ss_dssp ECCCTTSCCCHHHHHHHHHHHHHHH--HTTCEEEEE---ECCSCGGG-------------S-----------------CT
T ss_pred eCcCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---eCCCCCCc-------------C-----------------CH
Confidence 3699999999999999999888888 346665553 34321110 0 11
Q ss_pred HHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeeee
Q psy944 322 EKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRS 371 (689)
Q Consensus 322 ~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~~ 371 (689)
.+.+.|.++|+.||+..|..-.+ ..++...-..++.+|.++|++|.-
T Consensus 52 ~~~~~I~~dL~wlgl~~d~~~~~---QS~r~~~Y~~~~~~L~~~g~aY~C 98 (286)
T d1nzja_ 52 GAAETILRQLEHYGLHWDGDVLW---QSQRHDAYREALAWLHEQGLSYYC 98 (286)
T ss_dssp THHHHHHHHHHHTTCCCSSCCEE---GGGCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhhhccccccch---hHHHHHHHHHHHHHHHHcCCcccc
Confidence 24577899999999877743222 234455667888999999999864
No 27
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}
Probab=97.44 E-value=0.00025 Score=72.20 Aligned_cols=93 Identities=19% Similarity=0.185 Sum_probs=65.4
Q ss_pred cCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCcccccChHHHHHHHHHHHHhcccccccCHHHHHHHHHHH
Q psy944 240 VIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEW 319 (689)
Q Consensus 240 ~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~~Glpie~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~ 319 (689)
+==.|.|||+|||||++++++.=.+||- ..|.=+++.==+|.-- .
T Consensus 22 tRFAPSPTG~LHiG~~rtal~n~l~Ak~--~~G~fiLRIEDtD~~R---------------------------------~ 66 (331)
T d1gtra2 22 TRFPPEPNGYLHIGHAKSICLNFGIAQD--YKGQCNLRFDDTNPVK---------------------------------E 66 (331)
T ss_dssp EEECCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCGGG---------------------------------C
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEeCcCCCCc---------------------------------c
Confidence 3346899999999999999999998884 4566555443333200 0
Q ss_pred HHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCCeee
Q psy944 320 KKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYR 370 (689)
Q Consensus 320 ~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliy~ 370 (689)
...+.+.|.++|+-||+..|..-.+. .++...-+..+.+|.++|++|.
T Consensus 67 ~~~~~~~I~~dL~WLGl~wD~~~~~Q---S~r~~~Y~~~~~~L~~~G~aY~ 114 (331)
T d1gtra2 67 DIEYVESIKNDVEWLGFHWSGNVRYS---SDYFDQLHAYAIELINKGLAYV 114 (331)
T ss_dssp CHHHHHHHHHHHHHTTCCCSSSCEEG---GGGHHHHHHHHHHHHHTTSEEE
T ss_pred cchHHHHHHHHHHHHhccccccceec---chHHHHHHHHHHhhhhcCCccc
Confidence 12345778999999998877432222 3455667778899999999985
No 28
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
Probab=94.53 E-value=0.0054 Score=63.00 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=35.2
Q ss_pred EEEcceeeCCCCceeeeccCCccCchhhhhc-------------------------CChhhHHHHHhhcCc
Q psy944 134 VFLHPIVRDAHGRKMSKSLGNVIDPLDVVKG-------------------------ISLAGLQGRLLQDSN 179 (689)
Q Consensus 134 v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~-------------------------~~~d~~r~~l~~~~~ 179 (689)
.+.+|++. .+|+||||.+||+|.+++++++ .|.+++||++|+..+
T Consensus 286 hv~~g~v~-~~g~kMStR~G~~v~l~dll~ea~~~a~~~~~~r~~~~~~~~~~a~~vgi~avky~~L~~~~ 355 (370)
T d1iq0a2 286 HLAYETVL-LEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEP 355 (370)
T ss_dssp EEEECCEE-ETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCT
T ss_pred eEEEEEEe-cCCccccccCCCeeEHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHhhhhheehhHhhcCC
Confidence 34569888 7899999999999999999987 899999999997654
No 29
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
Probab=93.80 E-value=0.022 Score=49.92 Aligned_cols=37 Identities=54% Similarity=0.799 Sum_probs=31.6
Q ss_pred ceeeeEeEEeecCCceEEEEeccHHHHhhcccccccCc
Q psy944 481 GVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPE 518 (689)
Q Consensus 481 ~~~~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~ 518 (689)
|.++++.|++++ ++.+.|+||||++++++++++++|+
T Consensus 1 g~l~yvkf~~~~-~~~i~i~TTrP~Tl~g~~avav~P~ 37 (143)
T d1wkaa1 1 GKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPE 37 (143)
T ss_dssp CEEEEEEEEBTT-SCEEEEEESCGGGGGGCCEEEECTT
T ss_pred CeEEEEEEEeCC-CCEEEEEECCcchhcCceEEEEecc
Confidence 356788899864 6789999999999999999999874
No 30
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=86.52 E-value=0.11 Score=52.22 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=27.9
Q ss_pred eeeeccCCccCchhhhhc----------------------------CChhhHHHHHhhcCc
Q psy944 147 KMSKSLGNVIDPLDVVKG----------------------------ISLAGLQGRLLQDSN 179 (689)
Q Consensus 147 KmSKS~gn~~~~~~~~~~----------------------------~~~d~~r~~l~~~~~ 179 (689)
||||.+||+|.+++++++ .|.+++||++|+..+
T Consensus 272 kMStR~G~~i~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~ia~~vgv~ai~y~~L~~~~ 332 (348)
T d1f7ua2 272 GMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKR 332 (348)
T ss_dssp SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCT
T ss_pred cccccCCCceEHHHHHHHHHHHHHHHHHhccCcCCChhhHHHHHHHhhHHheehhhhhcCC
Confidence 899999999999999987 667778888876644
No 31
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}
Probab=84.44 E-value=0.25 Score=48.56 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=35.3
Q ss_pred eEEEcceeeCCCCceeeeccCCccCchhhhh-cCChhhHHHHHhhc
Q psy944 133 EVFLHPIVRDAHGRKMSKSLGNVIDPLDVVK-GISLAGLQGRLLQD 177 (689)
Q Consensus 133 ~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~-~~~~d~~r~~l~~~ 177 (689)
...-|+.+++.+|+||||+.|. .++.++.+ +|.+++||-||+.-
T Consensus 229 ~~~h~~l~~~~~g~KLSKr~~~-~tl~~lr~~G~~peai~~~l~~l 273 (305)
T d1j09a2 229 RFYHMPLLRNPDKTKISKRKSH-TSLDWYKAEGFLPEALRNYLCLM 273 (305)
T ss_dssp EEEEECCCBCTTSCBCCTTTSC-CBHHHHHHTTCCHHHHHHHHHHH
T ss_pred ceeeecccccCccccccccCCc-cCHHHHHHcCCCHHHHHHHHHHh
Confidence 4556788888999999999986 46677766 49999999988853
No 32
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=83.76 E-value=1 Score=44.45 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=28.0
Q ss_pred ceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCCc
Q psy944 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGC 281 (689)
Q Consensus 236 ~f~i~~~pP~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~ 281 (689)
++.+..|. -|||.+|+||...... +.++++ .|+++.+..|-
T Consensus 32 ~~~vy~G~-~PTg~lHlG~~l~~~~---l~~~q~-~g~~~~~~IaD 72 (339)
T d1n3la_ 32 ELKIYWGT-ATTGKPHVAYFVPMSK---IADFLK-AGCEVTILFAD 72 (339)
T ss_dssp CCEEEEEE-CCSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEECH
T ss_pred CCEEEEee-CCCCccHHHHHHHHHH---HHHHHH-CCCcEEEEecc
Confidence 45566665 4789999999887443 445554 58988766653
No 33
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}
Probab=82.49 E-value=0.41 Score=47.70 Aligned_cols=41 Identities=34% Similarity=0.486 Sum_probs=31.2
Q ss_pred ceEEEcceeeCCCCc-eeeeccCCccCchhhhhcCChhhHHHHHhhc
Q psy944 132 SEVFLHPIVRDAHGR-KMSKSLGNVIDPLDVVKGISLAGLQGRLLQD 177 (689)
Q Consensus 132 k~v~~hg~~~~~~g~-KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~~ 177 (689)
..++.+-++...+|+ |||||.||.|.+.+ .++.++=++++.
T Consensus 212 ~~~~~~p~L~gldG~~KMSKS~~naI~L~d-----sp~~i~~Ki~~~ 253 (343)
T d1h3fa1 212 QVCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 253 (343)
T ss_dssp CEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred cceeeccccccccccchhhcccccceeeec-----hhHHHHHHHhcC
Confidence 456666788888995 99999999998764 677777666653
No 34
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}
Probab=80.44 E-value=0.58 Score=42.40 Aligned_cols=37 Identities=32% Similarity=0.428 Sum_probs=32.3
Q ss_pred eeEeEEeecCCceEEEEeccHHHHhhcccccccCccc
Q psy944 484 ASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDE 520 (689)
Q Consensus 484 ~~~~y~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~ 520 (689)
.++.|++.+++..+.|.|+||+++++.++++++|++.
T Consensus 5 ~~V~F~v~~~~~~l~iwTTtPwTlpgn~avav~p~~~ 41 (192)
T d1h3na2 5 AEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHP 41 (192)
T ss_dssp EEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSH
T ss_pred EEEEEEecCCCcEEEEEeCCcchhhhccEEEECCchh
Confidence 4567888887889999999999999999999998764
No 35
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=72.18 E-value=0.62 Score=45.54 Aligned_cols=28 Identities=36% Similarity=0.477 Sum_probs=15.6
Q ss_pred eEEEcceeeCCCCc-eeeeccCCccCchh
Q psy944 133 EVFLHPIVRDAHGR-KMSKSLGNVIDPLD 160 (689)
Q Consensus 133 ~v~~hg~~~~~~g~-KmSKS~gn~~~~~~ 160 (689)
..+.|.++...+|+ |||||.||.|.+.|
T Consensus 189 ~~~~~~~l~gldG~~KMSKS~~n~I~L~D 217 (306)
T d1j1ua_ 189 VCIHNPVLTGLDGEGKMSSSKGNFIAVDD 217 (306)
T ss_dssp EEEEECCCCCTTCCC-------CSCBTTC
T ss_pred eecccccccCcccccccccccccccccCC
Confidence 45567888888995 99999999997554
No 36
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=72.05 E-value=0.61 Score=45.93 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=29.2
Q ss_pred ceEEEcceeeCCCCceeeeccCCccCchhhhhcCChhhHHHHHhh
Q psy944 132 SEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQ 176 (689)
Q Consensus 132 k~v~~hg~~~~~~g~KmSKS~gn~~~~~~~~~~~~~d~~r~~l~~ 176 (689)
--+++.-++...+|+|||||.||.|...+-. -++..+.-++++
T Consensus 215 ~~~it~pLl~~~~G~Km~KS~~n~i~l~~~~--tsP~~~y~k~~n 257 (323)
T d1jila_ 215 AYGLTIPLVTKSDGKKFGKSESGAVWLDAEK--TSPYEFYQFWIN 257 (323)
T ss_dssp CEEEEECCCBCTTSCBTTBCSSSBCBSSTTT--SCHHHHHHHHHT
T ss_pred ceEEecccccchhhhhhhhcCCCCeeeeccc--CChHHHHHHhhc
Confidence 3455667778889999999999999875521 234444444443
No 37
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.87 E-value=0.71 Score=46.67 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=29.2
Q ss_pred CCCceeecCCCCCCCcc-chhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 233 PKGKFVMVIPPPNVTGT-LHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 233 ~~~~f~i~~~pP~~nG~-lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
..++|++..|. -|||. +|+||...... +..++...|..|.+..|
T Consensus 71 ~gkp~~vytG~-~PSg~~lHlGh~v~~~~---~~~~q~~~~~~v~i~ia 115 (386)
T d1r6ta2 71 NKKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMT 115 (386)
T ss_dssp TTCCEEEEEEE-CCCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC
T ss_pred cCCCeEEEecc-CCCCchhHHHHHHHHHH---HHHHHHhcccceEEEec
Confidence 34678887776 78896 89999976553 22334455777765444
No 38
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=68.15 E-value=1.3 Score=43.07 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 245 NVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 245 ~~nG~lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
-|||.+|+||.. .+ ..+.+++.. |+++.+..|
T Consensus 36 ~PTG~lHlGh~v-~~--~~~~~lq~~-g~~~~~~Ia 67 (306)
T d1j1ua_ 36 EPSGKIHLGHYL-QI--KKMIDLQNA-GFDIIILLA 67 (306)
T ss_dssp CCCSSCBHHHHH-HH--HHHHHHHHT-TEEEEEEEC
T ss_pred CCCCcchHHHHH-HH--HHHHHHHHC-CCcEEEEec
Confidence 457999999987 22 346666665 988877665
No 39
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=66.18 E-value=1.9 Score=42.24 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=16.4
Q ss_pred ccchhhhhhhchHHHhhhHHHHH
Q psy944 660 VRTQNSEKLSEAEGELSRLPAAL 682 (689)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~ 682 (689)
.+.+-.....-.+++|+.+++++
T Consensus 300 L~~Ga~kAr~~A~~tl~~Vr~~~ 322 (326)
T d1i6la_ 300 LDEGAEKANRVASEMVRKMEQAM 322 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666777788888888876
No 40
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}
Probab=64.76 E-value=1.8 Score=42.73 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=28.1
Q ss_pred CceeecCCCCCCCcc-chhHHHHHHHHHHHHHHHHHhcCCeEeeCCC
Q psy944 235 GKFVMVIPPPNVTGT-LHLGHALTNAVEDSITRWNRMKGKTTLWNPG 280 (689)
Q Consensus 235 ~~f~i~~~pP~~nG~-lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G 280 (689)
+++.+..|. -|||+ |||||... ++. .++..-.|+++.+..|
T Consensus 32 ~~~~vY~G~-~PTg~sLHlGh~v~-~~~---~~~lq~~g~~~~~~ia 73 (343)
T d1h3fa1 32 RPLTVKLGA-DPTRPDLHLGHAVV-LRK---MRQFQELGHKVVLIIG 73 (343)
T ss_dssp SCCEEEEEE-CTTCCSCBHHHHHH-HHH---HHHHHHTTCEEEEEEC
T ss_pred CCCEEEEee-cCCCCcccHHHHHH-HHH---HHHHHHCCCceEEEEe
Confidence 456666665 67895 99999876 332 4444457999887665
No 41
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=43.53 E-value=8.1 Score=33.91 Aligned_cols=36 Identities=33% Similarity=0.406 Sum_probs=28.5
Q ss_pred eEeEEeec------CCceEEEEeccHHHHhhcccccccCccc
Q psy944 485 SFAYKLED------GSGEIVVATTRLETLFADVAVAVHPEDE 520 (689)
Q Consensus 485 ~~~y~~~~------~~~~~~i~~~~~e~~~~~~~~~~~~~~~ 520 (689)
++.|++.+ .+..++|.||+|.++++..+++++|+..
T Consensus 4 ~V~F~l~~~~~~~~~~~~l~iwTTtPwTLp~n~avav~p~~~ 45 (179)
T d1udza_ 4 YVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYT 45 (179)
T ss_dssp EEEEEBSCGGGGTCSSEEEEEEESCGGGGGGCCEEEECTTSE
T ss_pred EEEEEecCCccccCCCceEEEEeCCcchhhcceeeecCCCCc
Confidence 34566643 2457999999999999999999999754
No 42
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}
Probab=39.65 E-value=4.4 Score=39.32 Aligned_cols=28 Identities=25% Similarity=0.187 Sum_probs=22.5
Q ss_pred eEEEcceeeCCCCceeeeccCCccCchh
Q psy944 133 EVFLHPIVRDAHGRKMSKSLGNVIDPLD 160 (689)
Q Consensus 133 ~v~~hg~~~~~~g~KmSKS~gn~~~~~~ 160 (689)
-.++.-.+++.+|+|||||.||.++..+
T Consensus 216 ~~lT~PLL~~~~G~K~~ks~~n~i~l~~ 243 (319)
T d2ts1a_ 216 FGLTIPLVTKADGTKFGKTESGTIWLDK 243 (319)
T ss_dssp EEEEECCCCCTTSCCTTCCSSCCCBSST
T ss_pred eEeecccccccccceeeecCCCCccccc
Confidence 3456677788899999999999987654
No 43
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=39.42 E-value=4.7 Score=29.26 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=35.5
Q ss_pred HHHHHHhcCCCeeecccccchhhhhhhchHHHhhhHHHHHHHH
Q psy944 643 LKDQAAAEDYATKVPENVRTQNSEKLSEAEGELSRLPAALAAL 685 (689)
Q Consensus 643 ~k~~~~~~~~i~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (689)
+..++.+.+.++..|+.+.......+.+++.++..|.++|..|
T Consensus 23 ~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l~~L 65 (66)
T d1ivsa1 23 SQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQI 65 (66)
T ss_dssp HHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334334567888999999999999999999999999999765
No 44
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=32.32 E-value=13 Score=35.82 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=27.9
Q ss_pred ceeecCCCCCCCcc-chhHHHHHHHHHHHHHHHHHhcCCeEeeCCCc
Q psy944 236 KFVMVIPPPNVTGT-LHLGHALTNAVEDSITRWNRMKGKTTLWNPGC 281 (689)
Q Consensus 236 ~f~i~~~pP~~nG~-lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~ 281 (689)
++.+..|. =|||+ ||+||+.... ..|+....|+.+....|-
T Consensus 31 ~~~~Y~G~-DPTa~sLHlGhlv~l~----~l~~~q~~Gh~~i~LiG~ 72 (323)
T d1jila_ 31 QVTLYCGA-DPTADSLHIGHLLPFL----TLRRFQEHGHRPIVLIGG 72 (323)
T ss_dssp CCEEEEEE-CCSSSSCBHHHHHHHH----HHHHHHHTTCEEEEEECT
T ss_pred CcEEEEcc-cCCCccccHHHHHHHH----HHHHHHHhCCceEEeehh
Confidence 34444444 35666 9999996543 346777889999877774
No 45
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}
Probab=28.79 E-value=15 Score=35.23 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=29.5
Q ss_pred ceeecCCCCCCCcc-chhHHHHHHHHHHHHHHHHHhcCCeEeeCCCccc
Q psy944 236 KFVMVIPPPNVTGT-LHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDH 283 (689)
Q Consensus 236 ~f~i~~~pP~~nG~-lHiGH~~~~~i~D~laRy~rm~G~~V~~~~G~D~ 283 (689)
++.+..|. =||++ ||+||+.... ..|+....|++++...|-.+
T Consensus 30 ~~~~Y~G~-DPTa~sLHlGhlv~l~----~l~~~q~~Gh~~i~LiG~~T 73 (319)
T d2ts1a_ 30 RVTLYCGF-DPTADSLHIGHLATIL----TMRRFQQAGHRPIALVGGAT 73 (319)
T ss_dssp CCEEEEEE-CCSSSSCBGGGHHHHH----HHHHHHHTTCEEEEEECTTG
T ss_pred CceEEEee-cCCCCcchHHHHHHHH----HHHHHHHcCCceeEEeeehh
Confidence 44455554 34555 9999997653 45777788999988888644
No 46
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}
Probab=23.92 E-value=8.1 Score=36.61 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=5.2
Q ss_pred EcceeeCCCCceeeeccCC
Q psy944 136 LHPIVRDAHGRKMSKSLGN 154 (689)
Q Consensus 136 ~hg~~~~~~g~KmSKS~gn 154 (689)
=|+.+++.+|+||||+.+-
T Consensus 214 H~pli~~~~g~KLSKr~~~ 232 (286)
T d1nzja_ 214 HLPLALNPQGAKLSKQNHA 232 (286)
T ss_dssp EECBCCC------------
T ss_pred ecceEEccCCcccccccCc
Confidence 4488889999999999763
No 47
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.57 E-value=16 Score=35.25 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=17.6
Q ss_pred CceEEEcceeeCCCCceeeec-cCCccCch
Q psy944 131 HSEVFLHPIVRDAHGRKMSKS-LGNVIDPL 159 (689)
Q Consensus 131 ~k~v~~hg~~~~~~g~KmSKS-~gn~~~~~ 159 (689)
+...+.+.++...+|.||||| .||.|.+.
T Consensus 203 ~~~~l~~pll~~l~g~kmsks~~~~~I~l~ 232 (339)
T d1n3la_ 203 KRVHLMNPMVPGLTGSKMSSSEEESKIDLL 232 (339)
T ss_dssp CCEEEEECCCCCSSCC-------CCSCBTT
T ss_pred cceeeeeccccccccccccccchhhccccc
Confidence 456777888888899999997 58887543
Done!