RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy944
(689 letters)
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 405 bits (1043), Expect = e-129
Identities = 144/233 (61%), Positives = 176/233 (75%), Gaps = 1/233 (0%)
Query: 229 GEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIAT 288
N KFV+V+PPPNVTG LH+GHALT A++DS+ R++RMKG TLW PG DHAGIAT
Sbjct: 54 KSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIAT 113
Query: 289 QVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMD 348
QVVVEKKL +EE KTRH++GRE+F++KVWEWK + G+ I Q++ +GSSLDW R FTMD
Sbjct: 114 QVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMD 173
Query: 349 PKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYAN 408
+ S+AV EAFV L+E G IYR RLV+W C LK+AISDIEV+ E+ T + +PGY
Sbjct: 174 EQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDK 233
Query: 409 PVDFGVLASFAYKL-DDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDK 460
V+ GVL FAY L D G EIVVATTR+ET+ DVAVAVHP+DERYK L K
Sbjct: 234 KVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGK 286
Score = 341 bits (876), Expect = e-105
Identities = 130/250 (52%), Positives = 156/250 (62%), Gaps = 35/250 (14%)
Query: 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKK 60
MA++AV+AV+ GELKIIP H WY WLEN +DWCISRQLWWGHRIPAY V P
Sbjct: 411 MAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETD 470
Query: 61 PKNVTEYELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWP 120
P + E WV RS+EEA +KA KF +++ D L QDEDVLDTWFSSGLFPFS GWP
Sbjct: 471 PSDE---EPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWP 527
Query: 121 DKQ------------------------RLSANGIH-------SEVFLHPIVRDAHGRKMS 149
D+ R+ +H VFLH +VRD+ G KMS
Sbjct: 528 DQTDDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMS 587
Query: 150 KSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAERQRAADGQKRDYPQGIPECGTDALR 209
KS GNVIDPL+V++GISL L +L + NL E +RA + QK+++P GIPECGTDALR
Sbjct: 588 KSKGNVIDPLEVIEGISLQDLNQKLYE-GNLPEKEIKRAIELQKKEFPNGIPECGTDALR 646
Query: 210 FALAAYMSQG 219
F L AY QG
Sbjct: 647 FGLLAYTQQG 656
Score = 219 bits (560), Expect = 1e-60
Identities = 89/154 (57%), Positives = 110/154 (71%), Gaps = 3/154 (1%)
Query: 458 VDKVELTGRTPLRVPGYANPVDFGVLASFAYKLED-GSGEIVVATTRLETLFADVAVAVH 516
V+ E+ T + +PGY V+ GVL FAY LED G EIVVATTR+ET+ DVAVAVH
Sbjct: 215 VEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVH 274
Query: 517 PEDERYKHLVGKLLVHPF-CERKIPILADS-FVEKDFGTGAVKISPGHDHNDYEVAQRLN 574
P+DERYK L GK L+HPF +RKIPI+AD V+ +FGTGAVKI+P HD NDYE+A+R N
Sbjct: 275 PKDERYKKLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHN 334
Query: 575 LPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTE 608
LP I +F +G I + GEF GM RFD R ++ E
Sbjct: 335 LPFINIFTLDGKINENGGEFAGMHRFDCRRKIEE 368
Score = 60.4 bits (147), Expect = 2e-09
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 606 VTELISLSISSQGLIKVDKEIERLNKKEEYLKQVIAKLKDQAAAEDYATKVPENVRTQNS 665
V + + ++ I + KE+ +L KK L++ + + + +Y KVPE+VR N
Sbjct: 911 VDNKVIIYLNLDEFIDLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLND 970
Query: 666 EKLSEAEGELSRLPAALAALK 686
EK+ E E+ +L A+ LK
Sbjct: 971 EKIDELNEEIKQLEQAIEELK 991
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 363 bits (934), Expect = e-117
Identities = 155/403 (38%), Positives = 210/403 (52%), Gaps = 54/403 (13%)
Query: 226 KSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAG 285
KS+ K F + PPN TG LH+GHAL ++D + R+ RM+G LW PG DH G
Sbjct: 14 KSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLWVPGWDHHG 73
Query: 286 IATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACF 345
+ T+ VEKKL + KK RH++GREKF EK EWK E D I Q K +G S DWDR F
Sbjct: 74 LPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLGVSGDWDREYF 133
Query: 346 TMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPG 405
T+DP L AV FV LH+ G IYR ++ V+WS +L +A+S+ EV+ ++
Sbjct: 134 TLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEYKDVK--------- 184
Query: 406 YANPVDFGVLASFAYKLDDGSGE-IVVATTRLETLFADVAVAVHPEDERYKHLVDKVELT 464
G A+ L DG G +V+ TT TL + AVAV+PE K V
Sbjct: 185 -------GPSIHVAFPLADGKGASLVIWTTTPWTLPGNTAVAVNPEFNYVKIRVTGEYYI 237
Query: 465 GRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKH 524
L YK + GEI+ ED R K
Sbjct: 238 LAEA--------------LLKSLYKKKKEDGEIL-------------------EDFRGKE 264
Query: 525 LVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEE 584
L+GK +HPF R+IPI+AD +V+ +FGTGAV I+P H +DYEV +R NL I +++
Sbjct: 265 LIGKKYIHPFVNREIPIIADDYVDMEFGTGAVHIAPAHGEDDYEVGKRHNLEFINPVDDD 324
Query: 585 GVIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVDKEIE 627
G + EF G+KRF AR ++ EL ++ +GL+ + IE
Sbjct: 325 GTYNEEAPEFQGLKRFKARKKIVEL----LTEKGLLLKIEPIE 363
Score = 158 bits (402), Expect = 4e-41
Identities = 83/248 (33%), Positives = 112/248 (45%), Gaps = 78/248 (31%)
Query: 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKK 60
+AE A++AV+ +++ +P K + WLEN +DWCISRQ WWGH IPA+Y
Sbjct: 391 LAEAALKAVE--KVQFVPKWGEKRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTGEVYV 448
Query: 61 PKNVTEYELWVSGRSKEEAEQKAISKF---NVTQADISLRQDEDVLDTWFSSGLFPFSVF 117
++ E V+GR +EE + + + + + +L QDEDVLDTWFSSG +PFS
Sbjct: 449 RGSLKE---LVAGREEEEGIEAWLHRDAKDLLGKGAGTLEQDEDVLDTWFSSGSWPFSTL 505
Query: 118 GWPD------KQRLSAN-------------------GIH-------SEVFLHPIVRDAHG 145
G+P K+ A+ G V +H +VRD G
Sbjct: 506 GYPFTNTPEFKRFFPADMLLEGSDQTRGWFYRMIVLGTALTGSAPYKNVLVHGLVRDEQG 565
Query: 146 RKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAERQRAADGQKRDYPQGIPECGT 205
RKMSKSLGNVIDPLDV+ + G
Sbjct: 566 RKMSKSLGNVIDPLDVID--------------------------------------KYGA 587
Query: 206 DALRFALA 213
DALR LA
Sbjct: 588 DALRLWLA 595
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 364 bits (937), Expect = e-114
Identities = 128/240 (53%), Positives = 163/240 (67%), Gaps = 20/240 (8%)
Query: 230 EKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQ 289
+ N K F +VIPPPNVTG+LH+GHAL N ++D + R+ RM+G TLW PG DHAGIATQ
Sbjct: 31 DDNSKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQ 90
Query: 290 VVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDP 349
+VVE++L E K+RH++GREKF+EKVWEWK+E G I Q++ +G+S DW R FTMD
Sbjct: 91 MVVERQL-AAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDE 149
Query: 350 KLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANP 409
LS+AV E FV L+E G IYR +RLV+W L++A+SD+EV+ E
Sbjct: 150 GLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKE--------------- 194
Query: 410 VDFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDK---VELTGR 466
V G L Y L DGS +VVATTR ET+ D AVAV+PEDERYKHL+ K + L GR
Sbjct: 195 VK-GKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPLVGR 253
Score = 224 bits (573), Expect = 1e-62
Identities = 95/250 (38%), Positives = 124/250 (49%), Gaps = 93/250 (37%)
Query: 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKK 60
+A+ A++AV+ GE+K +P+ KT++ W+EN +DWCISRQLWWGHRIPA+Y D
Sbjct: 367 LAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWY----DE--- 419
Query: 61 PKNVTEYELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWP 120
+ E++V GR + EA +KA+ L QDEDVLDTWFSS L+PFS GWP
Sbjct: 420 -----DGEVYV-GREEPEAREKAL-----------LTQDEDVLDTWFSSALWPFSTLGWP 462
Query: 121 DKQ------------------------RLSANGIH-------SEVFLHPIVRDAHGRKMS 149
+K R+ G+H +V++H +VRD GRKMS
Sbjct: 463 EKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMS 522
Query: 150 KSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAERQRAADGQKRDYPQGIPECGTDALR 209
KS GNVIDPLD++ Y G DALR
Sbjct: 523 KSKGNVIDPLDLI-------------------------------DKY-------GADALR 544
Query: 210 FALAAYMSQG 219
F LAA S G
Sbjct: 545 FTLAALASPG 554
Score = 221 bits (565), Expect = 1e-61
Identities = 75/159 (47%), Positives = 100/159 (62%), Gaps = 13/159 (8%)
Query: 481 GVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFCERKIP 540
G L Y L DGS +VVATTR ET+ D AVAV+PEDERYKHL+GK ++ P R+IP
Sbjct: 197 GKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPLVGREIP 256
Query: 541 ILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRF 600
I+AD +V+ +FGTGAVKI+P HD ND+EV +R NLP+I + +E+G I + GE+ G+ RF
Sbjct: 257 IIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRF 316
Query: 601 DARTRVTELISLSISSQGLIKVDKEIERLNKKEEYLKQV 639
+AR + + GL L K E + V
Sbjct: 317 EARKAIVAD----LEELGL---------LVKIEPHTHSV 342
Score = 54.7 bits (133), Expect = 1e-07
Identities = 29/86 (33%), Positives = 48/86 (55%)
Query: 601 DARTRVTELISLSISSQGLIKVDKEIERLNKKEEYLKQVIAKLKDQAAAEDYATKVPENV 660
A + V L + +GLI V+ E+ RL K+ L++ I +++ + + E + K PE V
Sbjct: 788 GAASAVVGGAELFLPLEGLIDVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEV 847
Query: 661 RTQNSEKLSEAEGELSRLPAALAALK 686
+ EKL+E E +L++L LA LK
Sbjct: 848 VEKEREKLAEYEEKLAKLKERLARLK 873
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 346 bits (889), Expect = e-106
Identities = 144/227 (63%), Positives = 179/227 (78%)
Query: 231 KNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQV 290
K+ K FV+V+PPPNVTG LH+GHALT A+ED+I RW RM G LW PG DHAGIATQV
Sbjct: 124 KSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQV 183
Query: 291 VVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPK 350
VVEKKL RE TRH+IGRE+F+ +VW+WK E G I Q++ +G+SLDW R CFTMD +
Sbjct: 184 VVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQ 243
Query: 351 LSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPV 410
S+AVTEAFV L++ G IYR RLV+W C+L++AISD+EVD +++ RT L+VPGY PV
Sbjct: 244 RSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLLKVPGYDKPV 303
Query: 411 DFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHL 457
+FGVL SFAY L+ G GEIVVATTR+ET+ D A+A+HP+DERYKHL
Sbjct: 304 EFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHL 350
Score = 264 bits (675), Expect = 5e-76
Identities = 123/256 (48%), Positives = 158/256 (61%), Gaps = 40/256 (15%)
Query: 1 MAEKAVQAVKTGE---LKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDP 57
MA++A+ A GE L+ IP + W +WLEN RDWCISRQLWWGHRIPA+YV+ D
Sbjct: 478 MAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDD 537
Query: 58 AKKPKNVTEY-ELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSV 116
K + Y + WV R++ +A +A KF + ++S QD DVLDTWFSSGLFP SV
Sbjct: 538 QL--KELGSYNDHWVVARNESDALLEASQKFPGKKFELS--QDPDVLDTWFSSGLFPLSV 593
Query: 117 FGWPDKQ------------------------RLSANGIH-------SEVFLHPIVRDAHG 145
GWPD R+ G+ +V+LHP++RDAHG
Sbjct: 594 LGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHG 653
Query: 146 RKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAERQRAADGQKRDYPQGIPECGT 205
RKMSKSLGNVIDPL+V+ GISL GL R L++ NL+ E A +GQK+D+P GI ECGT
Sbjct: 654 RKMSKSLGNVIDPLEVINGISLEGLHKR-LEEGNLDPKELVVAKEGQKKDFPNGIAECGT 712
Query: 206 DALRFALAAYMSQGER 221
DALRFAL +Y +Q ++
Sbjct: 713 DALRFALVSYTAQSDK 728
Score = 197 bits (503), Expect = 3e-53
Identities = 94/172 (54%), Positives = 120/172 (69%), Gaps = 6/172 (3%)
Query: 458 VDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHP 517
VD +++ RT L+VPGY PV+FGVL SFAY LE G GEIVVATTR+ET+ D A+A+HP
Sbjct: 283 VDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHP 342
Query: 518 EDERYKHLVGKLLVHPFCERKIPILADS-FVEKDFGTGAVKISPGHDHNDYEVAQRLNLP 576
+DERYKHL GK VHPF RK+PI+ D+ V+ +FGTGAVKI+P HD ND+EV +R NL
Sbjct: 343 DDERYKHLHGKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLE 402
Query: 577 LITVFNEEGVIIGDYG-EFTGMKRFDARTRVTELISLSISSQGLIKVDKEIE 627
I +F ++G I + G EF GM RF AR V E ++ +GL + K E
Sbjct: 403 FINIFTDDGKINSNGGSEFAGMPRFAAREAVIE----ALQKKGLYRGAKNNE 450
Score = 41.0 bits (96), Expect = 0.002
Identities = 18/64 (28%), Positives = 38/64 (59%)
Query: 606 VTELISLSISSQGLIKVDKEIERLNKKEEYLKQVIAKLKDQAAAEDYATKVPENVRTQNS 665
V E + + + +QG + + E+E+L K + +++ KL+ + A Y KVP N++ +++
Sbjct: 979 VNENLKVYLQAQGAVNAEAELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDA 1038
Query: 666 EKLS 669
KL+
Sbjct: 1039 RKLT 1042
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 331 bits (852), Expect = e-102
Identities = 134/255 (52%), Positives = 165/255 (64%), Gaps = 28/255 (10%)
Query: 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVE 293
K F + PPPNVTG+LH+GHAL ++D + R+ RM+G LW PG DHAGIATQVVVE
Sbjct: 32 KPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVE 91
Query: 294 KKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSR 353
K+L E TRH++GRE+F++K WEWK+E G I EQ++ +G S+DW R FTMDP LSR
Sbjct: 92 KQLA-AEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSR 150
Query: 354 AVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFG 413
AV EAFV L+E G IYR ERLV+W ++AISDIEV+ E+ G
Sbjct: 151 AVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVE----------------G 194
Query: 414 VLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDK---VELTGRTPLR 470
L Y L DG G +VVATTR ETL D AVAVHP+DERYKHLV K + L GR
Sbjct: 195 KLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGR---E 251
Query: 471 VP----GYANPVDFG 481
+P Y +P +FG
Sbjct: 252 IPIIADEYVDP-EFG 265
Score = 210 bits (536), Expect = 7e-58
Identities = 80/160 (50%), Positives = 102/160 (63%), Gaps = 14/160 (8%)
Query: 481 GVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFCERKIP 540
G L Y L DG G +VVATTR ETL D AVAVHP+DERYKHLVGK ++ P R+IP
Sbjct: 194 GKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIP 253
Query: 541 ILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY-GEFTGMKR 599
I+AD +V+ +FGTGAVKI+P HD NDYEV +R NLPLI + +E+G I + GEF G+ R
Sbjct: 254 IIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDR 313
Query: 600 FDARTRVTELISLSISSQGLIKVDKEIERLNKKEEYLKQV 639
F+AR ++ E + +E L K E + V
Sbjct: 314 FEARKKIVEDL-------------EEQGLLVKIEPHKHSV 340
Score = 203 bits (518), Expect = 2e-55
Identities = 89/251 (35%), Positives = 112/251 (44%), Gaps = 86/251 (34%)
Query: 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKK 60
+A+KA++AVK G++K +P+ K + W+EN RDWCISRQLWWGHRIP +Y
Sbjct: 365 LAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYC-------- 416
Query: 61 PKNVTEYELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWP 120
K V + E A L QDEDVLDTWFSS L+PFS GWP
Sbjct: 417 -KECGN---VVVAEEEPEDPAAAEKCPKE-----ELEQDEDVLDTWFSSSLWPFSTLGWP 467
Query: 121 DKQ------------------------RLSANGIH-------SEVFLHPIVRDAHGRKMS 149
++ R+ G+H +V++H +VRD GRKMS
Sbjct: 468 EETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMS 527
Query: 150 KSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAERQRAADGQKRDYPQGIPECGTDALR 209
KS GNVIDPLDV I + G DALR
Sbjct: 528 KSKGNVIDPLDV--------------------------------------IDKYGADALR 549
Query: 210 FALAAYMSQGE 220
F LA+ S G
Sbjct: 550 FTLASLASPGR 560
Score = 46.9 bits (112), Expect = 4e-05
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 604 TRVTELISLSISSQGLIKVDKEIERLNKKEEYLKQVIAKLKDQAAAEDYATKVPENVRTQ 663
T V L + GLI + E+ RL K+ E L++ I +++ + + E + K PE V +
Sbjct: 794 TAVVGGAELFLPLAGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEK 853
Query: 664 NSEKLSEAEGELSRLPAALAALK 686
EKL+E + +L++L LA LK
Sbjct: 854 EKEKLAEYQVKLAKLEERLAVLK 876
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 301 bits (773), Expect = 5e-91
Identities = 137/252 (54%), Positives = 167/252 (66%), Gaps = 22/252 (8%)
Query: 220 ERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNP 279
E++G K G N K F + IPPPNVTG+LH+GHAL +++D I R+ RMKG LW P
Sbjct: 19 EKSGFFKPDGNSN-KPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLP 77
Query: 280 GCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLD 339
G DHAGIATQV VEKKL E KT+H++GRE+F EK+WEWK+E G I Q+K +G+SLD
Sbjct: 78 GTDHAGIATQVKVEKKLG-AEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLD 136
Query: 340 WDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRT 399
W R FTMD LS+AV EAFV L+E G IYR E LV+W L +AISDIEV+ E+ G+
Sbjct: 137 WSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEVKGK- 195
Query: 400 PLRVPGYANPVDFGVLASFAYKLDDGS-GEIVVATTRLETLFADVAVAVHPEDERYKHLV 458
L Y L +GS +VVATTR ET+F D AVAVHPEDERYKHL+
Sbjct: 196 ---------------LYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLI 240
Query: 459 DK---VELTGRT 467
K + LTGR
Sbjct: 241 GKKVILPLTGRK 252
Score = 181 bits (462), Expect = 4e-48
Identities = 84/250 (33%), Positives = 111/250 (44%), Gaps = 86/250 (34%)
Query: 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKK 60
+A+KA++A + GE+K +P K + WL N +DWCISRQL WGHRIP +Y
Sbjct: 365 LADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWY--------- 415
Query: 61 PKNVTEYELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWP 120
E++V+ ++ T + L QD DVLDTWFSS L+PFS GWP
Sbjct: 416 --CKECGEVYVAKEEPLPDDKTN------TGPSVELEQDTDVLDTWFSSSLWPFSTLGWP 467
Query: 121 DKQ------------------------RLSANGIH-------SEVFLHPIVRDAHGRKMS 149
D+ R+ + EV++H +VRD GRKMS
Sbjct: 468 DETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMS 527
Query: 150 KSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAERQRAADGQKRDYPQGIPECGTDALR 209
KSLGNVIDPLDV I + G DALR
Sbjct: 528 KSLGNVIDPLDV--------------------------------------IEKYGADALR 549
Query: 210 FALAAYMSQG 219
F LA+ ++ G
Sbjct: 550 FTLASLVTPG 559
Score = 176 bits (448), Expect = 3e-46
Identities = 66/124 (53%), Positives = 91/124 (73%), Gaps = 1/124 (0%)
Query: 486 FAYKLEDGS-GEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFCERKIPILAD 544
Y L +GS +VVATTR ET+F D AVAVHPEDERYKHL+GK ++ P RKIPI+AD
Sbjct: 199 IRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIAD 258
Query: 545 SFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDART 604
+V+ +FGTGAVK++P HD NDYE +R NL I + +E+G++ + G++ G+ RF+AR
Sbjct: 259 EYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARK 318
Query: 605 RVTE 608
++ E
Sbjct: 319 KIVE 322
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 282 bits (725), Expect = 5e-89
Identities = 100/156 (64%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 235 GKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEK 294
FV+ PPPNVTG+LH+GHAL N ++D I R+ RMKG LW PG DHAGIATQVVVEK
Sbjct: 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEK 60
Query: 295 KLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRA 354
KL E K TRH++GRE+F+EK WEWK+E G +I EQ+K +G+S+DW R FTMDP LSRA
Sbjct: 61 KLGIEGK-TRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRA 119
Query: 355 VTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEV 390
V EAFV L+E G IYR RLV+W L++AISDIEV
Sbjct: 120 VQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV 155
Score = 230 bits (588), Expect = 6e-69
Identities = 97/253 (38%), Positives = 120/253 (47%), Gaps = 81/253 (32%)
Query: 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKK 60
+A+KA++AVK G++K +P+ K + WLEN RDWCISRQLWWGHRIPA+Y
Sbjct: 178 LAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGH--- 234
Query: 61 PKNVTEYELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWP 120
WV R ++EA KA + V L+QDEDVLDTWFSS L+PFS GWP
Sbjct: 235 ---------WVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWP 285
Query: 121 DKQ------------------------RLSANGIH-------SEVFLHPIVRDAHGRKMS 149
++ R+ G+ EV+LH +VRD GRKMS
Sbjct: 286 EETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMS 345
Query: 150 KSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAERQRAADGQKRDYPQGIPECGTDALR 209
KSLGNVIDPLDV I G DALR
Sbjct: 346 KSLGNVIDPLDV--------------------------------------IDGYGADALR 367
Query: 210 FALAAYMSQGERT 222
F LA+ +QG
Sbjct: 368 FTLASAATQGRDI 380
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 268 bits (686), Expect = 1e-77
Identities = 131/244 (53%), Positives = 166/244 (68%), Gaps = 20/244 (8%)
Query: 229 GEKNPKGK--FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGI 286
G+++ + + F +V+PPPNVTG+LHLGHALT ++D + RW RM G TLW PG DHAGI
Sbjct: 40 GDEHDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGI 99
Query: 287 ATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFT 346
ATQ++VEK+L + EKK+RH++GRE F+E+VW WK++ G RI EQ K +G+SLDW R FT
Sbjct: 100 ATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFT 159
Query: 347 MDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGY 406
MD LSRAV E FV LHE G IYR ++L++W ++A+SD+EV+ E
Sbjct: 160 MDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQ--------- 210
Query: 407 ANPVDFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDK---VEL 463
G L SFAY L DGSGEIVVATTR ET+ D AVAVHP D RY L K +
Sbjct: 211 ------GELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPI 264
Query: 464 TGRT 467
TGRT
Sbjct: 265 TGRT 268
Score = 150 bits (380), Expect = 1e-37
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 5/145 (3%)
Query: 481 GVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFCERKIP 540
G L SFAY L DGSGEIVVATTR ET+ D AVAVHP D RY L GK + HP R P
Sbjct: 211 GELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFP 270
Query: 541 ILADS-FVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKR 599
I+AD+ V+ FGTGAVK++P HD ND+EV +R L +ITV +G + + G G+ R
Sbjct: 271 IVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDR 330
Query: 600 FDARTRVTELISLSISSQGLIKVDK 624
F+AR V L ++ QGL + K
Sbjct: 331 FEARKEVKRL----LAEQGLDRGAK 351
Score = 149 bits (378), Expect = 2e-37
Identities = 86/250 (34%), Positives = 108/250 (43%), Gaps = 90/250 (36%)
Query: 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKK 60
+A A++AV+ G + IP+ T T+ W+ N DWCISRQLWWGH+IPA+Y P
Sbjct: 382 LARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYC----PDGH 437
Query: 61 PKNVTEYELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWP 120
R EA LRQDEDVLDTWFSSGL+PFS GWP
Sbjct: 438 V---------TVARETPEACSTCGKA--------ELRQDEDVLDTWFSSGLWPFSTMGWP 480
Query: 121 DKQ------------------------RLSANGIH-------SEVFLHPIVRDAHGRKMS 149
++ R+ G+H V+LHP+VRD G+KMS
Sbjct: 481 EQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMS 540
Query: 150 KSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAERQRAADGQKRDYPQGIPECGTDALR 209
K+ GNVIDPL + + G DALR
Sbjct: 541 KTKGNVIDPLVI--------------------------------------TEQYGADALR 562
Query: 210 FALAAYMSQG 219
F LAA +QG
Sbjct: 563 FTLAALTAQG 572
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 235 bits (602), Expect = 1e-66
Identities = 119/251 (47%), Positives = 164/251 (65%), Gaps = 24/251 (9%)
Query: 237 FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKL 296
FV+ +PPPNVTG+LH+GHA+ +ED + R+NRMKG+ TLW PG DHAGIATQ+VVEK L
Sbjct: 90 FVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKML 149
Query: 297 WREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVT 356
E K R ++GR++F ++VWEWK++ G I Q+K +G+S DW R FT+D +LSRAV
Sbjct: 150 ASEGIK-RTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVV 208
Query: 357 EAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLA 416
EAFV LHE G IY+ +V+WS +L++A+SD+EV+ E + G L
Sbjct: 209 EAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE----------------EPGTLY 252
Query: 417 SFAYKLDDGSGE-IVVATTRLETLFADVAVAVHPEDERYKHLVDK---VELTG--RTPLR 470
Y++ GS + + +ATTR ETLF DVA+AV+PED+RY + K V +T P+
Sbjct: 253 YIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPII 312
Query: 471 VPGYANPVDFG 481
Y + DFG
Sbjct: 313 ADRYVDK-DFG 322
Score = 176 bits (447), Expect = 4e-46
Identities = 95/222 (42%), Positives = 120/222 (54%), Gaps = 50/222 (22%)
Query: 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKK 60
+AEKA++AV+ GEL IIP+ K + WL N +DWCISRQLWWGHRIP +Y+ D
Sbjct: 417 LAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCE-- 474
Query: 61 PKNVTEYELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWP 120
E ++ RS EEA +KA K+ D+ + QD DVLDTWFSS L+PFS GWP
Sbjct: 475 -------EDYIVARSAEEALEKAREKYG---KDVEIYQDPDVLDTWFSSALWPFSTLGWP 524
Query: 121 DKQ-------------------------RLSANGIH-------SEVFLHPIVRDAHGRKM 148
D R+ GI S V+LH ++RD+ GRKM
Sbjct: 525 DVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKM 584
Query: 149 SKSLGNVIDPLDVVKGISLAGLQ-----GRLLQDSNLEAAER 185
SK+LGNVIDPLD +K L+ G QD NL + ER
Sbjct: 585 SKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNL-STER 625
Score = 138 bits (349), Expect = 9e-34
Identities = 61/128 (47%), Positives = 89/128 (69%), Gaps = 6/128 (4%)
Query: 481 GVLASFAYKLEDGSGE-IVVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPF-CERK 538
G L Y++ GS + + +ATTR ETLF DVA+AV+PED+RY +GK+ + P R
Sbjct: 249 GTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRH 308
Query: 539 IPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMK 598
+PI+AD +V+KDFGTG +KISPGHDHNDY +A++L LP++ V N++G + E G+
Sbjct: 309 VPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL----NEVAGLY 364
Query: 599 RFDARTRV 606
F+AR ++
Sbjct: 365 WFEAREKL 372
Score = 34.1 bits (78), Expect = 0.31
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 619 LIKVDKEIERLNKKEEYLKQVIAKLKDQAAAEDYATKVPENVRTQNSEKLSEAEGELSRL 678
++ + E+ERL+K+ ++ L + ++ + K PE+V EK +EAE ++
Sbjct: 884 MVDISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLT 943
Query: 679 PAALAALK 686
LA LK
Sbjct: 944 KNRLAFLK 951
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 164 bits (417), Expect = 2e-42
Identities = 90/247 (36%), Positives = 127/247 (51%), Gaps = 32/247 (12%)
Query: 242 PPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEK 301
PPP V+G+LH+GH + D I R+ RM+G + G D G+ T+ VEK
Sbjct: 45 PPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYY----G 100
Query: 302 KTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVT-EAFV 360
+ +I RE+FIE E E + E + +G S+DW T+ P+ R ++ ++F+
Sbjct: 101 IRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPE-YRRISQKSFL 159
Query: 361 ILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAY 420
L++ G IYR+E V W ++AI+ EV+ E G+ L +
Sbjct: 160 DLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYREREGK----------------LNYIKF 203
Query: 421 KLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPL---RVPGYANP 477
++DG EI +ATTR E L A VAV VHP+DERYKHLV K T PL VP A+P
Sbjct: 204 PVEDG-EEIEIATTRPELLPACVAVVVHPDDERYKHLVGK---TAIVPLFGVEVPILADP 259
Query: 478 ---VDFG 481
DFG
Sbjct: 260 LVDPDFG 266
Score = 136 bits (346), Expect = 2e-33
Identities = 67/180 (37%), Positives = 96/180 (53%), Gaps = 21/180 (11%)
Query: 481 GVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFCERKIP 540
G L + +EDG EI +ATTR E L A VAV VHP+DERYKHLVGK + P ++P
Sbjct: 196 GKLNYIKFPVEDG-EEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVP 254
Query: 541 ILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRF 600
ILAD V+ DFGTGAV I D D + LNLP + +E+G + G+ G+
Sbjct: 255 ILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIE 314
Query: 601 DARTRVTELISLSISSQGLI--------------KVDKEIERLNKKEEYLKQVIAKLKDQ 646
+AR ++ E + S GL+ + D +E L ++ ++K + LK++
Sbjct: 315 EARKKIVED----LKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVL--DLKEE 368
Score = 73.3 bits (181), Expect = 2e-13
Identities = 51/205 (24%), Positives = 71/205 (34%), Gaps = 84/205 (40%)
Query: 13 ELKIIPDHHTKTWYQWLEN-NRDWCISRQ--------LWW----GHRIPA----YYVSFN 55
E+ P+H W+E N DWCISRQ +W+ GH I V
Sbjct: 375 EINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPV--- 431
Query: 56 DPAK-KPKNVTEYELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPF 114
DP K +P G + + DV+DTW +S + P
Sbjct: 432 DPTKDEPP----------GYKCPQCGSP------------GFEGETDVMDTWATSSITPL 469
Query: 115 SVFGWPDKQRLSANGIHSEVF---LHP-------------IVR----------------- 141
V GW + L +VF L P I+R
Sbjct: 470 IVTGWERDEDL-----FEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISG 524
Query: 142 ---DAHGRKMSKSLGNVIDPLDVVK 163
D G+KMSKS GNV+ P ++++
Sbjct: 525 MVLDPDGKKMSKSKGNVVTPEELLE 549
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 157 bits (400), Expect = 4e-40
Identities = 108/402 (26%), Positives = 172/402 (42%), Gaps = 71/402 (17%)
Query: 225 RKSIGEKNPKGK-FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDH 283
K E+N FV+ PP G +H+GHAL ++D I R+ M+G + PG D
Sbjct: 38 EKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDC 97
Query: 284 AGIATQVVVEKKLWREEKKTRHEIGREKFIEK----VWEWKKEKGDRIYEQMKLMGSSLD 339
G+ ++ VEKKL KK G E+F EK E E+ EQ K +G D
Sbjct: 98 HGLPIELKVEKKL-GIGKKDIESFGVEEFREKCREFALEQVDEQK----EQFKRLGVWGD 152
Query: 340 WDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRT 399
W+ TMDP +V AF L+E G +YR + V WS ++A+++ EV+
Sbjct: 153 WENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVE-------- 204
Query: 400 PLRVPGYANPVDFGVLASFAYKLDDGSGE----IVVATTRLETLFADVAVAVHPEDERYK 455
Y + D + F + D + +V+ TT TL A++A+AVHP+ +
Sbjct: 205 ------YGDVKDPSIYVKF--PVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLD--- 253
Query: 456 HLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAV 515
Y +E ++++A +E++ V
Sbjct: 254 ------------------YV-------------LVEVNGEKLILAKALVESVAKKAGVED 282
Query: 516 HPEDERYK--HLVGKLLVHPF----CERKIPILADSFVEKDFGTGAVKISPGHDHNDYEV 569
+ E +K L G HPF +R P++ V D GTG V +PGH DYEV
Sbjct: 283 YEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEV 342
Query: 570 AQRLN-LPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTELI 610
++ L ++ ++ G + ++ G+ DA ++ E +
Sbjct: 343 GKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDL 384
Score = 90.3 bits (225), Expect = 1e-18
Identities = 55/208 (26%), Positives = 74/208 (35%), Gaps = 63/208 (30%)
Query: 3 EKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPK 62
+K ++ + ++ +PD + +EN DWCISRQ +WG IP +Y K+
Sbjct: 427 DKMLKEIN--KVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWY------CKETG 478
Query: 63 NVTEYELWVSGRSKEEAEQKAISKFNVTQADI------------------SLRQDEDVLD 104
+ EE E+ D R+ DVLD
Sbjct: 479 EILVI--------TEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLD 530
Query: 105 TWFSSG------LFPFSVFGWP-----------DKQR-----LSANGIHS-------EVF 135
WF SG L P +P D+ R V
Sbjct: 531 VWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVL 590
Query: 136 LHPIVRDAHGRKMSKSLGNVIDPLDVVK 163
H V D GRKMSKSLGNV+DP DV+
Sbjct: 591 THGFVLDEKGRKMSKSLGNVVDPQDVID 618
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 149 bits (379), Expect = 2e-37
Identities = 99/405 (24%), Positives = 164/405 (40%), Gaps = 57/405 (14%)
Query: 225 RKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHA 284
K K +F+ PP G++HLGHAL ++D I R+ M+G PG D
Sbjct: 26 EKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTH 85
Query: 285 GIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRAC 344
G+ + VEKKL KK + E+F EK E+ ++ + EQ + +G DW+
Sbjct: 86 GLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPY 145
Query: 345 FTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVP 404
TMDP + F HE G +YR + V+WS ++A+++ EV+ E V
Sbjct: 146 KTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKE----NYKDVK 201
Query: 405 GYANPVDFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELT 464
+ V F V L +++ TT TL +++A+AVHP+ E
Sbjct: 202 DPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFE------------ 249
Query: 465 GRTPLRVPGYANPVDFGVLASFAYKLEDGSGEI--VVATTRLETLFADVAVAVHPEDERY 522
YA ++D + ++A +E L+ + + +
Sbjct: 250 ---------YA-------------LVQDNTKVEYFILAKKLVEKLYNKAGS-DYEIIKTF 286
Query: 523 K--HLVGKLLVHPFCERKIP-------ILADSFVEKDFGTGAVKISPGHDHNDYEVAQRL 573
K L G HP + ++ V + GTG V +PGH DYE+ ++
Sbjct: 287 KGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKY 346
Query: 574 NLPLITVFNEEGVII-------GDYGEFTGMKRFDARTRVTELIS 611
L +++ +E+GV G + + A + E +
Sbjct: 347 GLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLK 391
Score = 89.0 bits (221), Expect = 3e-18
Identities = 56/200 (28%), Positives = 73/200 (36%), Gaps = 60/200 (30%)
Query: 12 GELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWV 71
++ +P+ + WLEN DWCISRQ +WG IP +Y + +P V
Sbjct: 440 KKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWY---CEDTGEPIVVG------ 490
Query: 72 SGRSKEEAEQKAISK-----FNVTQADI------------SLRQDEDVLDTWFSSGLFPF 114
S EE + K F D R+ DVLD WF SG P+
Sbjct: 491 ---SIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPY 547
Query: 115 SVFGWPDKQR------------------------LSANGIHS-------EVFLHPIVRDA 143
+ +P + A G V H D
Sbjct: 548 ASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDE 607
Query: 144 HGRKMSKSLGNVIDPLDVVK 163
GRKMSKSLGNV+DPL V+
Sbjct: 608 KGRKMSKSLGNVVDPLKVIN 627
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 132 bits (335), Expect = 2e-34
Identities = 56/177 (31%), Positives = 82/177 (46%), Gaps = 12/177 (6%)
Query: 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKK 295
KF + PPP G+LHLGHALT+ + D I R+ RM+G + PG D G+ ++ E+K
Sbjct: 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60
Query: 296 LWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAV 355
R +KKT E+F E E+ +E E + +G S DW T +P+ S+AV
Sbjct: 61 GGR-KKKTIW---IEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAV 116
Query: 356 TEAFVILHEAGDIYRSERLV----HWSCSLKSAISDIEVDKVELTGRTPLRVPGYAN 408
F L+E G IYR V W + + ++ R + N
Sbjct: 117 ELIFSRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKL----LKALRRGKIVPEHVKN 169
Score = 81.7 bits (202), Expect = 8e-17
Identities = 49/193 (25%), Positives = 69/193 (35%), Gaps = 84/193 (43%)
Query: 2 AEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKP 61
EK ++A++ KI+P+H WLE+ DW ISRQ +WG +P
Sbjct: 150 KEKLLKALR--RGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP------------- 194
Query: 62 KNVTEYELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPD 121
EDV D WF SG+ P G+P+
Sbjct: 195 --------------------------------------EDVFDVWFDSGIGPLGSLGYPE 216
Query: 122 KQR-----------------------------LSANGIH--SEVFLHPIVRDAHGRKMSK 150
++ ++ G + +H V D G+KMSK
Sbjct: 217 EKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSK 276
Query: 151 SLGNVIDPLDVVK 163
S GNVIDP DVV+
Sbjct: 277 SKGNVIDPSDVVE 289
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 129 bits (327), Expect = 7e-31
Identities = 102/391 (26%), Positives = 160/391 (40%), Gaps = 70/391 (17%)
Query: 225 RKSIGEKNPKGK-FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDH 283
KSI E G FV PP G H GH LT ++D + R+ MKG G D
Sbjct: 31 EKSI-ENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDT 89
Query: 284 AGIATQVVVEKKLWREEKKTRHEIGREKFIEK----VWEWKKEKGDRIYEQMKLMGSSLD 339
G+ ++ VEK+L KK E G EKF EK V + E E + +G +D
Sbjct: 90 HGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWE----EYTERLGRWVD 145
Query: 340 WDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRT 399
+D T+D + +V A L++ G +Y+ R+V + ++ +S+ EV +
Sbjct: 146 FDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQ------- 198
Query: 400 PLRVPGYANPVDFGVLASFAYKLDDGSGE-IVVATTRLETLFADVAVAVHPEDERYKHLV 458
GY + D V F KL E ++ TT TL +++A+AVHP+ +
Sbjct: 199 -----GYKDVKDPSVYVKF--KLKGEENEYLLAWTTTPWTLPSNLALAVHPDID------ 245
Query: 459 DKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPE 518
Y K+E G ++A LE + + V
Sbjct: 246 ---------------YV-------------KVEGGGEVYILAEALLEKVLKEDYEVV--- 274
Query: 519 DERYK--HLVGKLLVHPFCERKIP-----ILADSFVEKDFGTGAVKISPGHDHNDYEVAQ 571
E +K L G PF ++ FV + GTG V I+P +D+EV +
Sbjct: 275 -ETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGK 333
Query: 572 RLNLPLITVFNEEGVIIGDYGEFTGMKRFDA 602
+ LP++ +++G + ++ G DA
Sbjct: 334 KYGLPVVCPVDDDGRFTEEVPDYAGKFVKDA 364
Score = 75.9 bits (188), Expect = 4e-14
Identities = 51/193 (26%), Positives = 67/193 (34%), Gaps = 82/193 (42%)
Query: 28 WLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVS---GR-----SKEEA 79
WLEN RDW ISR +WG +P +W GR S EE
Sbjct: 439 WLENARDWNISRNRYWGTPLP--------------------IWRCEDCGRIDVIGSIEEL 478
Query: 80 EQKAISKFNVTQADISL------------------RQDEDVLDTWFSSGLFPFSVFGWP- 120
E+ I L R+ DV+D WF SG P++ +P
Sbjct: 479 EELFG----EDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDSGSMPYAQLHYPF 534
Query: 121 -DKQRLSAN--------GI----------H------------SEVFLHPIVRDAHGRKMS 149
+K+ + GI V +H V D G+KMS
Sbjct: 535 ENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMS 594
Query: 150 KSLGNVIDPLDVV 162
KSLGN +DP +V
Sbjct: 595 KSLGNYVDPFEVF 607
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 122 bits (308), Expect = 1e-28
Identities = 110/396 (27%), Positives = 166/396 (41%), Gaps = 72/396 (18%)
Query: 228 IGEKNP-KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCD-HAG 285
I E N K KF++ PP G +H+GHAL ++D I + M G + PG D H G
Sbjct: 41 IREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCH-G 99
Query: 286 --IATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRA 343
I +V EKKL K ++ +F +K E+ E+ D E K +G DWD
Sbjct: 100 LPIELKV--EKKL----GKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNP 153
Query: 344 CFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEV---DKVELTGRTP 400
TMD K + A + + G +Y+ + V+W SA+++ EV DK
Sbjct: 154 YLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKT------- 206
Query: 401 LRVPGYANP---VDFGVL-ASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKH 456
+P V F V+ A D S +V+ TT TL A+ A+AVHPE
Sbjct: 207 -------SPSIYVAFPVVDGKLAAAFKDAS--LVIWTTTPWTLPANQAIAVHPE------ 251
Query: 457 LVDKVELTGRTPLRVPGYANPVDFGVLASFAYKL-EDGSGEIVVATTRLETLFADVAVAV 515
F Y L E +++VA +E++
Sbjct: 252 -----------------------------FDYVLVEVEGEKLIVAKDLVESVLERFGWED 282
Query: 516 HPEDERYK--HLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRL 573
+ +K L G + HPF +R P++ V D GTG V +PGH +DY V Q+
Sbjct: 283 YEVLATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKY 342
Query: 574 NLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEL 609
L ++ +++G + F G+ F A ++ E
Sbjct: 343 GLEVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIEK 378
Score = 66.7 bits (164), Expect = 3e-11
Identities = 58/197 (29%), Positives = 73/197 (37%), Gaps = 79/197 (40%)
Query: 24 TWY-QWLEN-------NR-DWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGR 74
W W +N NR DWCISRQ WG IP +Y K+ T EL +
Sbjct: 434 KWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFY------HKE----TG-ELHPTPE 482
Query: 75 SKEEAEQKAISK------FNVTQADI------SLRQDEDVLDTWFSSGL----------- 111
E K K F + ++ ++ D+LD WF SG
Sbjct: 483 LIEHV-AKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQRPE 541
Query: 112 --FPFSVF--------GW---------------PDKQRLSANGIHSEVFLHPIVRDAHGR 146
+P ++ GW P KQ L+ H D GR
Sbjct: 542 LGYPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLT----------HGFTVDGKGR 591
Query: 147 KMSKSLGNVIDPLDVVK 163
KMSKSLGNVIDP DV+K
Sbjct: 592 KMSKSLGNVIDPQDVIK 608
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 115 bits (289), Expect = 2e-26
Identities = 102/387 (26%), Positives = 169/387 (43%), Gaps = 30/387 (7%)
Query: 220 ERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNP 279
E K + ++N F + PP G LH+GHAL ++D I R+ ++GK + P
Sbjct: 17 EENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVP 76
Query: 280 GCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLD 339
G D G+ ++ V + L +++ R E+ K K ++ K+ D E K G D
Sbjct: 77 GWDCHGLPIELKVLQSL---DQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGD 133
Query: 340 WDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRT 399
W+ T+DP+ A E F + G IYR + VHWS S ++A+++ E++ E
Sbjct: 134 WENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEYPEGHVSK 193
Query: 400 PLRVPGYANPVDFG---VLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKH 456
+ V A PV L S + + TT T+ A+ AVAV+ + + +
Sbjct: 194 SIYV---AFPVVSPSETSPEELEEFLPGLS--LAIWTTTPWTMPANAAVAVNDKLQ---Y 245
Query: 457 LVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFAD-----V 511
V +V+ G VL E ++VAT + L A V
Sbjct: 246 SVVEVQSFSEDESTSGGNKKKRPGNVL------KEQQKLFLIVATDLVPALEAKWGVKLV 299
Query: 512 AVAVHPEDERYKHLVGKLLVHPFCERKIPILAD-SFVEKDFGTGAVKISPGHDHNDYEVA 570
+ P + L G +HP R+ P++ ++ + GTG V +PGH DY
Sbjct: 300 VLKTFPGSD----LEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITG 355
Query: 571 QRLNLPLITVFNEEGVIIGDYGEFTGM 597
+ LPL++ ++ G + G+F+G+
Sbjct: 356 LKYGLPLLSPVDDAGKFTEEAGQFSGL 382
Score = 69.4 bits (170), Expect = 4e-12
Identities = 52/194 (26%), Positives = 78/194 (40%), Gaps = 36/194 (18%)
Query: 3 EKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYY-VSFNDPAKKP 61
+ A+ A+ +K IP + DWCISRQ WG IP +Y V +P
Sbjct: 439 QAALDAIDK--VKWIPAQGENRIRAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPLMNE 496
Query: 62 KNVTEYELWVSGRSKE-----EAEQKAISKFNVTQADISLRQDEDVLDTWFSSGL----- 111
+ + + V+ + + + E K+ +A + D +D WF SG
Sbjct: 497 ETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYR-DKAS-DYEKGTDTMDVWFDSGSSWAGV 554
Query: 112 --------FPFSVF--------GWPDKQRLS---ANGI--HSEVFLHPIVRDAHGRKMSK 150
+P ++ GW L+ G + V H V D G KMSK
Sbjct: 555 LGSREGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSK 614
Query: 151 SLGNVIDPLDVVKG 164
SLGNV+DP V++G
Sbjct: 615 SLGNVVDPRLVIEG 628
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 98.9 bits (247), Expect = 2e-21
Identities = 99/422 (23%), Positives = 148/422 (35%), Gaps = 114/422 (27%)
Query: 231 KNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAG----- 285
+ KF +++ P +G LH+GH + D I R+ RM+G L G D G
Sbjct: 30 SDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAEN 89
Query: 286 IATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACF 345
A ++ + W I KK Q+K +G S+DW R
Sbjct: 90 AAIKIGTDPAKWTY-----------YNIA---YMKK--------QLKSLGFSIDWRREFA 127
Query: 346 TMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAI------------SDIEVDKV 393
T DP+ + + F+ L+E G YR E V+W + + V+
Sbjct: 128 TCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIK 187
Query: 394 ELTGRTPLRVPGYA--------------------------NPVDFGVLASFAYKLDDGSG 427
ELT ++ YA P G +F ++
Sbjct: 188 ELTQWF-FKITDYADELLDDLDKLATLWPETVKGMQRNWIGP-SEGYEVAFVVDGEEEIV 245
Query: 428 EIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFA 487
I V TTR +TLF V + PE LV K+ NP
Sbjct: 246 SIEVFTTRPDTLFGVTYVVLAPEHP----LVGKL------------VTNPQT-------- 281
Query: 488 YKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHL-VGKLLVHPFCERKIPILADSF 546
+VA E V +V P + +G ++P KIP+ ++
Sbjct: 282 ---------PLVAEFVDECKGTGVVESV-PAHAEKDGVFLGGYAINPVNGEKIPVWIANY 331
Query: 547 VEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITV-----------FNEEGVIIGDYGEFT 595
V ++GTGAV P HD D E A + LP+ V + EGV+I + G
Sbjct: 332 VLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLI-NSGGLD 390
Query: 596 GM 597
G+
Sbjct: 391 GL 392
Score = 45.3 bits (108), Expect = 9e-05
Identities = 37/190 (19%), Positives = 56/190 (29%), Gaps = 71/190 (37%)
Query: 32 NRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYEL--WVSGRSKEEAEQKAISK--- 86
RDW SRQ +WG IP + V E L + R + +
Sbjct: 419 LRDWLKSRQRYWGEPIPIIH----CEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEE 474
Query: 87 -FNVTQADISLRQDEDVLDTWF-SSGLFP------------------------------- 113
+ D + ++ D +DT+ SS +
Sbjct: 475 WVIESLPDSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGI 534
Query: 114 --------FSVF---------GWPDK---QRLSANGIHSEVFLHPIVRDAHGRKMSKSLG 153
+ F P ++L G+ V G KMSKS G
Sbjct: 535 EHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGM---------VLGEEGEKMSKSKG 585
Query: 154 NVIDPLDVVK 163
NV+DP + V+
Sbjct: 586 NVVDPEEAVE 595
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 97.5 bits (243), Expect = 6e-21
Identities = 103/413 (24%), Positives = 157/413 (38%), Gaps = 104/413 (25%)
Query: 244 PNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGI-ATQVVVEKKLWREEKK 302
P +G LH+GH + D ++R+ RMKG L G D G+ A ++
Sbjct: 38 PYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPIGWDAFGLPAENAAIK--------- 88
Query: 303 TRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVIL 362
I K W E + +Q++ +G S DWDR T DP+ + F+ L
Sbjct: 89 --RGIHPAK-------WTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLEL 139
Query: 363 HEAGDIYRSERLVHWSCSLKSAISDIEVDK--VELTGRTP----------LRVPGYA--- 407
E G Y E V+W + + +++ +VD G TP L++ YA
Sbjct: 140 FEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGDTPVEKKELKQWFLKITAYAEEL 199
Query: 408 -------------------NPVDFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVH 448
N + +K+ D +I V TTR +T+F +A+
Sbjct: 200 LNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIADHDEKITVFTTRPDTIFGVTYLALA 259
Query: 449 PEDERYKH-LVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETL 507
PE H LV+K NP K+ +I+ T T
Sbjct: 260 PE-----HPLVEKA-----------AENNP-----------KVAAFIKKILNKTVAERTK 292
Query: 508 FADVAVAVHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDY 567
V G +HP KIPI ++V ++GTGAV P HD D+
Sbjct: 293 ATKEKKGVDT---------GIKAIHPLTGEKIPIWVANYVLMEYGTGAVMGVPAHDERDF 343
Query: 568 EVAQRLNLPLITV-------------FNEEGVIIGDYGEFTGMKRFDARTRVT 607
E AQ+ LP+ V + E+GV++ + GEF G+ +AR +
Sbjct: 344 EFAQKYGLPIKPVIDPAEKDLSLTAAYTEDGVLV-NSGEFNGLNSSEARNAII 395
Score = 32.8 bits (75), Expect = 0.73
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 147 KMSKSLGNVIDPLDVVK 163
KMSKS GN IDP ++V+
Sbjct: 605 KMSKSKGNGIDPQEIVE 621
Score = 31.6 bits (72), Expect = 1.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 33 RDWCISRQLWWGHRIP 48
RDW SRQ +WG IP
Sbjct: 413 RDWGFSRQRYWGEPIP 428
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 94.2 bits (235), Expect = 7e-21
Identities = 49/142 (34%), Positives = 71/142 (50%)
Query: 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKK 295
+FV PP G H GHAL ++D I R+ M+G PG D G+ ++ VEK+
Sbjct: 2 EFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKE 61
Query: 296 LWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAV 355
L KK ++G +F K E+ D EQ + +G +DW+ TMDP+ +V
Sbjct: 62 LGISGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESV 121
Query: 356 TEAFVILHEAGDIYRSERLVHW 377
F LHE G +YR ++V W
Sbjct: 122 WWVFKQLHEKGLLYRGYKVVPW 143
Score = 85.0 bits (211), Expect = 9e-18
Identities = 52/178 (29%), Positives = 66/178 (37%), Gaps = 67/178 (37%)
Query: 17 IPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSK 76
IP+ + WLEN RDWCISRQ +WG IP +W
Sbjct: 174 IPEWVKNRFGNWLENRRDWCISRQRYWGTPIP--------------------VWYCEDCG 213
Query: 77 EEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWP---------------- 120
E + +R+ DVLD WF SG P++ +P
Sbjct: 214 E----------------VLVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFIL 257
Query: 121 ---DKQR-----LSANGIH-------SEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVK 163
D+ R L V +H V D GRKMSKSLGN +DP +VV
Sbjct: 258 EGSDQTRGWFYSLLLLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVD 315
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 88.1 bits (219), Expect = 6e-18
Identities = 98/396 (24%), Positives = 155/396 (39%), Gaps = 61/396 (15%)
Query: 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVE 293
+ KFV+ PP G +H+GHAL ++D I R +M G + PG D G+ + +E
Sbjct: 53 RPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIE 112
Query: 294 KKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSR 353
+K +R + K + E+ +F ++ E+ D E+ K +G DWD TMD
Sbjct: 113 EK-YRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEA 171
Query: 354 AVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPV--D 411
+ F G +YR + V WS ++A+++ E++ ++ T PV
Sbjct: 172 RIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIW----VKFPVKDG 227
Query: 412 FGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRV 471
G+L S Y +V+ TT T+ A+ A++ P ++ + +V
Sbjct: 228 KGILDSGTY--------VVIWTTTPWTIPANRAISYSP---DIEYGLYEVT--------- 267
Query: 472 PGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLL- 530
DF VVA E++ V ER + G+ L
Sbjct: 268 ---GAENDFWAKPGERL---------VVADALAESVAKKAGVESF---ERLADVKGEDLE 312
Query: 531 ----VHPF-----CERKIPILADSFVEKDFGTGAVKISPGHDHNDYEV--AQRLNLPLIT 579
HP E ++P+L V D GTG V +PGH D+ V +T
Sbjct: 313 KIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVT 372
Query: 580 V-----FNEE--GVIIGDYGEFTGMKRFDARTRVTE 608
V + E G + G K DA V E
Sbjct: 373 VDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIE 408
Score = 63.0 bits (154), Expect = 4e-10
Identities = 49/197 (24%), Positives = 75/197 (38%), Gaps = 46/197 (23%)
Query: 3 EKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPK 62
+A+ A+ + + +P Y +E+ DW ISRQ WG IP + + +
Sbjct: 460 SRALDAID--KTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAEDGEILMDEE 517
Query: 63 NVTEY--ELWVSGRS----KEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSG------ 110
V + + + E A+++ + F+ + + D+LD WF SG
Sbjct: 518 -VNARIADAFEEEGADAWFAEGAKERFLGGFH---PNGEFTKVTDILDVWFDSGSTHAFV 573
Query: 111 LFPFSVFGWP--------DKQRLSANG-IHSE---------------VFLHPIVRDAHGR 146
L WP D+ R G +S V H D G
Sbjct: 574 LEDRPDLKWPADLYLEGSDQHR----GWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGE 629
Query: 147 KMSKSLGNVIDPLDVVK 163
KMSKSLGN + P DV+K
Sbjct: 630 KMSKSLGNTVSPQDVIK 646
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 86.8 bits (215), Expect = 1e-17
Identities = 100/467 (21%), Positives = 167/467 (35%), Gaps = 93/467 (19%)
Query: 224 RRKSIGEKNP--KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGC 281
I E +P + KF + + P + G +H GH T + + R+ RMKGK L+ G
Sbjct: 12 EEAHIFEADPDDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGF 71
Query: 282 DHAGIATQVVVEKKLWREEKKT------RHEIGREKFIE-KVWEWKKEKGDRIYEQ-MKL 333
H + + + + R ++ T H I RE+ ++ E+ E R E K
Sbjct: 72 -HVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKS 130
Query: 334 MGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKV 393
MG S+DW R+ T DP R + L E G I + E V + + + D ++
Sbjct: 131 MGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNPVEDHDL--- 187
Query: 394 ELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDER 453
L+G V++ ++ ++L+DG+ V AT R ET++ V+P
Sbjct: 188 -LSGEG-------VTIVEYILI---KFELEDGAFYFVAATLRPETVYGVTNCWVNPTITY 236
Query: 454 YKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAV 513
V + + + A++ + L
Sbjct: 237 VIAEVGGEKW------------------ITSKEAFE-----------NLSYQKLKYKPIE 267
Query: 514 AVHPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRL 573
V + +GK + +P ++PIL FV+ GTG V P H +DY + L
Sbjct: 268 EVPGKQ-----FIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDL 322
Query: 574 NLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVDKE-------- 625
D + + + I LI D
Sbjct: 323 -------------------------LHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEI 357
Query: 626 IERLNKKEEYLKQVIAKLKDQAAAEDYATKV-PENVRTQNSEKLSEA 671
+E K + K ++ + E+Y T V N+ K+SEA
Sbjct: 358 VEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEA 404
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 79.5 bits (196), Expect = 3e-15
Identities = 103/446 (23%), Positives = 160/446 (35%), Gaps = 137/446 (30%)
Query: 233 PKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGI-ATQVV 291
PK + + P P+ G LH+GH D + R+ RM+G L G D G+ A Q
Sbjct: 110 PKFYVLDMFPYPSGAG-LHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYA 168
Query: 292 VEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKL 351
+E T +I K I R Q+K +G S DWDR T +P+
Sbjct: 169 IETG-------THPKITTLKNI-----------ARFRSQLKSLGFSYDWDREISTTEPEY 210
Query: 352 SRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEV-DKVELTGRTP---------- 400
+ F+ L + G Y++E V+W +L + +++ EV D + G P
Sbjct: 211 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWM 270
Query: 401 LRVPGYA---------------------NPVDFGVLASFAYKLDDGSG-----EIVVATT 434
L++ YA N + A + + DG G +I V TT
Sbjct: 271 LKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTT 330
Query: 435 RLETLFADVAVAVHPE---------DERYKHLVDKVELTG------RTPLRVPGYANPVD 479
R +TLF + V PE E+ + + + V+ RT L
Sbjct: 331 RPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTEL------QKEK 384
Query: 480 FGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFCERKI 539
GV + +Y + +GE +
Sbjct: 385 TGVF-TGSYAINPATGEAI----------------------------------------- 402
Query: 540 PILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITV--------------FNEEG 585
PI +V +GTGA+ P HD D+E AQ+ +LP+ V + EG
Sbjct: 403 PIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEG 462
Query: 586 VIIG---DYGEFTGMKRFDARTRVTE 608
VI+ + G+ +A +V E
Sbjct: 463 VIVNSSSSGLDINGLSSKEAAKKVIE 488
Score = 33.3 bits (76), Expect = 0.52
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 14/54 (25%)
Query: 27 QWLENN-----------RDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYEL 69
+WLE RDW +RQ +WG IP ++ + + +P V E +L
Sbjct: 488 EWLEETGNGKKKVNYKLRDWLFARQRYWGEPIPVVFL---EDSGEPVPVPESDL 538
Score = 33.3 bits (76), Expect = 0.56
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 143 AHGRKMSKSLGNVIDPLDVV 162
A KMSKS GNV++P DVV
Sbjct: 719 ARAHKMSKSRGNVVNPDDVV 738
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 75.0 bits (185), Expect = 1e-14
Identities = 47/152 (30%), Positives = 68/152 (44%), Gaps = 28/152 (18%)
Query: 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAG-----IATQV 290
KF +++ P +G LH+GH T + D I R+ RM+G L+ G D G A ++
Sbjct: 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI 60
Query: 291 VVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPK 350
+ + W E I+K K EQ+K MG S DW R T DP+
Sbjct: 61 GRDPEDW-----------TEYNIKK---MK--------EQLKRMGFSYDWRREFTTCDPE 98
Query: 351 LSRAVTEAFVILHEAGDIYRSERLVHWSCSLK 382
+ F+ L+E G Y+ E V+W C L
Sbjct: 99 YYKFTQWLFLKLYEKGLAYKKEAPVNW-CKLL 129
Score = 38.8 bits (91), Expect = 0.007
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 16/56 (28%)
Query: 111 LFP--FSVFGWPDKQRLSANG-IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVK 163
LF P + L G + E G KMSKS GNV+ P + +K
Sbjct: 249 LFDEGLVTDEPP--KGLIVQGMVLLE-----------GEKMSKSKGNVVTPDEAIK 291
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2. This
is a family of the conserved region of Leucine-tRNA
ligase or Leucyl-tRNA synthetase, EC:6.1.1.4.
Length = 178
Score = 72.1 bits (178), Expect = 1e-14
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 50/174 (28%)
Query: 484 ASFAYKLEDGSGEIVVATTRLETLF-AD-VAVAV-HP-------EDERYKHLV------- 526
A +K+E +I V TTR +TLF +A+A HP ++ +
Sbjct: 3 AEIDFKVEGSDEKIEVFTTRPDTLFGVTFLALAPEHPLAKKLAEKNPELAAFIEECKKTS 62
Query: 527 ----------------GKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVA 570
G +HP KIPI +FV D+GTGAV P HD D+E A
Sbjct: 63 TIERTIATAEKEGIFTGLYAIHPITGEKIPIWIANFVLMDYGTGAVMAVPAHDQRDFEFA 122
Query: 571 QRLNLPLITV----------------FNEEGVIIGDYGEFTGMKRFDARTRVTE 608
++ NLP+ V + E+G++I + GEF G+ +A+ + E
Sbjct: 123 KKYNLPIKQVIKPEDGDEDDLIMEEAYTEKGILI-NSGEFDGLDSEEAKEAIAE 175
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 77.2 bits (191), Expect = 2e-14
Identities = 100/433 (23%), Positives = 158/433 (36%), Gaps = 129/433 (29%)
Query: 250 LHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHA------GIATQVVVEKKLWREEK-- 301
LH+GH T + D I R+ RM+G L+ P H GIA ++ + + +
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLF-PMAFHVTGTPILGIAERI---AR--GDPETI 54
Query: 302 ---KTRHEIGREKFIEKV---WEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAV 355
K+ + I E+ +EK + + E MK +G S+DW R T DP+ S+ +
Sbjct: 55 ELYKSLYGIPEEE-LEKFKDPEYIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFI 113
Query: 356 TEAFVILHEAGDIYRSERLVHWSCSLKSAISD------IEVDKVELTGRTPLRVPGYANP 409
F L E G I + V + + + + D E + VE T
Sbjct: 114 EWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEYTL------------ 161
Query: 410 VDFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPL 469
+ F + +D + AT R ET+F + V+P+ K E+ G
Sbjct: 162 IKF-------EESEDLI--LPAATLRPETIFGVTNLWVNPDATYVK-----AEVDGEK-W 206
Query: 470 RVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKL 529
V A A KL ++ + E+ + L+GK
Sbjct: 207 IVSKEA-----------AEKLSFQDRDVEII-----------------EEIKGSELIGKK 238
Query: 530 LVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDY----------EVAQRLNL-PLI 578
+ +P +++PIL FV+ D GTG V P H DY E+ + PLI
Sbjct: 239 VKNPVTGKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLI 298
Query: 579 TVFN-----------------------EE------------GVIIGDYGEFTGMKRFDAR 603
V EE GV+ + GE+ G +AR
Sbjct: 299 EVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAR 358
Query: 604 TRVTE-LISLSIS 615
++T+ LI I+
Sbjct: 359 EKITKDLIEKGIA 371
Score = 32.5 bits (75), Expect = 0.99
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 145 GRKMSKSLGNVIDPLDVVK 163
G+KMSKS GNVI ++
Sbjct: 575 GKKMSKSKGNVIPLRKAIE 593
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 67.8 bits (167), Expect = 1e-11
Identities = 48/172 (27%), Positives = 70/172 (40%), Gaps = 48/172 (27%)
Query: 484 ASFAYKLEDGSGEIVVATTRLETLF-AD-VAVAV-HP----------------------- 517
A +K+ED +I V TTR +TLF A + +A HP
Sbjct: 229 AEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKS 288
Query: 518 EDERYKHLVGKLLV-------HPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVA 570
+ ER K V HP KIP+ +V D+GTGAV P HD D+E A
Sbjct: 289 DLERQTETKEKTGVFTGLYAIHPLTGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFA 348
Query: 571 QRLNLPLITV--------------FNEEGVIIGDYGEFTGMKRFDARTRVTE 608
++ LP+ V + +GV+I + GE G+ +A+ +
Sbjct: 349 KKYGLPIKPVIEPGDGDEDISEEAYTGDGVLI-NSGELDGLDSEEAKEAIIA 399
Score = 41.2 bits (98), Expect = 0.002
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 329 EQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHW 377
+Q+K +G S DW R T DP+ + F+ L+E G YR E V+W
Sbjct: 109 KQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNW 157
Score = 37.8 bits (89), Expect = 0.022
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 147 KMSKSLGNVIDPLDVVK 163
KMSKS GNV+DP D+++
Sbjct: 570 KMSKSKGNVVDPDDIIE 586
Score = 34.3 bits (80), Expect = 0.24
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 11/36 (30%)
Query: 27 QWLENN-----------RDWCISRQLWWGHRIPAYY 51
WLE RDW ISRQ +WG IP +
Sbjct: 399 AWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIPIIH 434
Score = 30.0 bits (69), Expect = 4.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 248 GTLHLGHALTNAVEDSITRWNRMKGK 273
G LH+GH + D I R+ RM+G
Sbjct: 45 GGLHMGHVRNYTIGDVIARYKRMQGY 70
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 61.7 bits (150), Expect = 1e-09
Identities = 86/355 (24%), Positives = 137/355 (38%), Gaps = 81/355 (22%)
Query: 243 PPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKK 302
PP TG H GH L ++D +TR+ M G G D G+ + ++KKL + +
Sbjct: 46 PPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRD 105
Query: 303 TRHEIGREKFIEK--------VWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRA 354
++G +K+ E+ EW+K + G +D++ TMDPK +
Sbjct: 106 DVLKMGIDKYNEECRSIVTRYSKEWEK--------TVTRTGRWIDFENDYKTMDPKFMES 157
Query: 355 VTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGV 414
V F L E G +Y+ +++ +S + K+ +S+ E G V A V F +
Sbjct: 158 VWWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEA------GLNYKDVSDPAVMVSFPI 211
Query: 415 LASFAYKLDDGSGEIVVA-TTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPG 473
+ D VA TT TL +++A+ V+P Y + +K
Sbjct: 212 -------VGDPDNASFVAWTTTPWTLPSNLALCVNPNFT-YVKVRNK------------- 250
Query: 474 YANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAV---HPED-----ERYKHL 525
Y V +VA +RL L + PE+ E +
Sbjct: 251 YTGKV------------------YIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKV 292
Query: 526 VGKLLV----HP-------FCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEV 569
G LV P F + ++AD +V D GTG V +P +DY V
Sbjct: 293 PGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRV 347
Score = 56.3 bits (136), Expect = 4e-08
Identities = 50/202 (24%), Positives = 74/202 (36%), Gaps = 76/202 (37%)
Query: 17 IPDH-HTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSG-- 73
+PD+ K ++ WLEN RDW +SR +WG +P +W+S
Sbjct: 448 VPDYVKEKRFHNWLENARDWAVSRSRFWGTPLP--------------------IWISDDG 487
Query: 74 ------RSKEEAEQKA------ISKFNVTQADIS---------LRQDEDVLDTWFSSGLF 112
S E E+ + + + + I LR+ +DV D WF SG
Sbjct: 488 EEVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSM 547
Query: 113 PFSVFGWP--------------------DKQR--------LSANGIHSEVFLHPI----V 140
P++ +P D+ R LS F + I V
Sbjct: 548 PYAYIHYPFENKELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLV 607
Query: 141 RDAHGRKMSKSLGNVIDPLDVV 162
G+KMSKSL N DP +V+
Sbjct: 608 LAEDGKKMSKSLKNYPDPNEVI 629
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 55.0 bits (133), Expect = 8e-08
Identities = 37/144 (25%), Positives = 54/144 (37%), Gaps = 23/144 (15%)
Query: 231 KNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQV 290
K ++ P G HLGH T D R+ R++G + G D G ++
Sbjct: 1 MKMMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIEL 60
Query: 291 VVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACF--TMD 348
EK+ I ++ ++K E E K + S D F T
Sbjct: 61 KAEKE----------GITPQELVDKNHE-------EFKELFKALNISFD----NFIRTTS 99
Query: 349 PKLSRAVTEAFVILHEAGDIYRSE 372
P+ V E F+ L+E GDIY E
Sbjct: 100 PEHKELVQEFFLKLYENGDIYLRE 123
Score = 42.3 bits (100), Expect = 9e-04
Identities = 37/192 (19%), Positives = 70/192 (36%), Gaps = 60/192 (31%)
Query: 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENN-RDWCISRQ-LWWGHRIPAY-----YVS 53
+K ++ ++ I P + +L+ +D I+R L WG +P YV
Sbjct: 197 FQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPGDPGKVIYVW 256
Query: 54 FNDPAKKPKNVTEYELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSG--- 110
F+ Y IS +++ D++ ++ +
Sbjct: 257 FDAL-------IGY----------------ISAL----GELAEIGDDEDFKKFWPADDTE 289
Query: 111 ---------LFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHG------RKMSKSLGNV 155
+ +V+ WP A + + + L P AHG +KMSKS GNV
Sbjct: 290 LVHFIGKDIIRFHAVY-WP------AMLMAAGLPL-PTRIFAHGFLTLEGQKMSKSRGNV 341
Query: 156 IDPLDVVKGISL 167
+DP ++++ +
Sbjct: 342 VDPDELLEQYGV 353
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 51.0 bits (123), Expect = 1e-06
Identities = 34/139 (24%), Positives = 48/139 (34%), Gaps = 23/139 (16%)
Query: 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKK 295
KF + P G H+GHA T D + R+ R++G + G D G +K
Sbjct: 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHG-------QKI 54
Query: 296 LWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACF--TMDPKLSR 353
+ E+ E + + S D F T DP+
Sbjct: 55 QRKAEEAGISPQ----------ELADRNSAAFKRLWEALNISYD----DFIRTTDPRHKE 100
Query: 354 AVTEAFVILHEAGDIYRSE 372
AV E F L GDIY +
Sbjct: 101 AVQEIFQRLLANGDIYLGK 119
Score = 43.7 bits (104), Expect = 3e-04
Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 111 LFPFSVFGWPDKQRLSANGIH--SEVFLHP-IVRDAHGRKMSKSLGNVIDPLDVVK 163
L +V WP L A G+ VF H + D G KMSKSLGNVIDP D+V
Sbjct: 265 LRFHAV-YWP--AFLMAAGLPLPKRVFAHGFLTLD--GEKMSKSLGNVIDPFDLVD 315
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 51.5 bits (123), Expect = 1e-06
Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 8/162 (4%)
Query: 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVE 293
K ++ PP TG H GH L ++D +TR+ G + G D G+ + +E
Sbjct: 101 KKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIE 160
Query: 294 KKLWREEKKTRHEIGREKFIEK----VWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDP 349
K+ +K+ ++G + + EK V ++ E + ++ +G +D+ TMD
Sbjct: 161 KENNINKKEDILKMGIDVYNEKCRGIVLKYSNE----WVKTVERIGRWIDFKNDYKTMDK 216
Query: 350 KLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVD 391
+V F L++ +Y+S +++ +SC + IS+ E++
Sbjct: 217 TFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELN 258
Score = 44.6 bits (105), Expect = 2e-04
Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 38/181 (20%)
Query: 17 IPDH-HTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRS 75
IP H K ++ W+++ +DWCISR +WG IP + + +++ E ++
Sbjct: 552 IPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEELSGVKN 611
Query: 76 KEEAEQKAISKFNVTQAD----ISLRQDEDVLDTWFSSGLFPFSVFGWP----------- 120
+ + I + L++ +V D WF SG P++ +P
Sbjct: 612 INDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKI 671
Query: 121 ----------DKQR------------LSANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDP 158
D+ R L + + +V + G+KMSK L N DP
Sbjct: 672 FPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDP 731
Query: 159 L 159
L
Sbjct: 732 L 732
Score = 41.5 bits (97), Expect = 0.001
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 521 RYKHLVGKLL-VHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEV 569
RYK L + F ER ILAD FV D GTG V +P + +D+ V
Sbjct: 401 RYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRV 450
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 48.4 bits (116), Expect = 8e-06
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 21/151 (13%)
Query: 242 PPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEK 301
P V G H+GH T D R+ R++G L+ G D G ++ EK
Sbjct: 6 ALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEK------- 58
Query: 302 KTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLD-WDRACFTMDPKLSRAVTEAFV 360
+ ++ +++ E E K S D + R T + V E F+
Sbjct: 59 ---EGVTPQELVDRYHE-------EFKELFKKFNISFDDFIR---TTSERHKELVQEFFL 105
Query: 361 ILHEAGDIYRSERLVHWSCSLKSAISDIEVD 391
L+E GDIY E + S + + D V+
Sbjct: 106 KLYEKGDIYEGEYEGWYCVSDERFLPDRYVE 136
Score = 41.5 bits (98), Expect = 0.001
Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 62/162 (38%)
Query: 27 QWLENN-RDWCISRQLWWGHRIPAY-----YV----------SFNDPAKKPKNVTEYELW 70
WL+ +D I+R L WG +P YV + + P+ ++ W
Sbjct: 216 SWLKEGLKDLSITRDLDWGIPVPGDPGKVIYVWFDALIGYISATKYLSGNPEKWKKF--W 273
Query: 71 VSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPF-SVF--------GWPD 121
E I K + F +++ G P
Sbjct: 274 ADDPDTEIVH--FIGKDII-----------------------RFHAIYWPAMLMAAGLPL 308
Query: 122 KQRLSANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVK 163
++ A+G V G KMSKS GNV+DP +++
Sbjct: 309 PTQVFAHG-------WLTVE---GGKMSKSRGNVVDPDELLD 340
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 48.5 bits (116), Expect = 9e-06
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 23/133 (17%)
Query: 242 PPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEK 301
P G HLGHA T + D R+ R++G L+ G D G ++ E++
Sbjct: 6 ALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE------ 59
Query: 302 KTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLD--WDRACFTMDPKLSRAVTEAF 359
+ ++ + D+ +E+ K L+ +DR T D + V + F
Sbjct: 60 ----GLTPKELV-----------DKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIF 104
Query: 360 VILHEAGDIYRSE 372
L E G IY E
Sbjct: 105 QKLKENGYIYEKE 117
Score = 47.8 bits (114), Expect = 2e-05
Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 45/172 (26%)
Query: 27 QWLENN-RDWCISRQL-WWGHRIP-----AYYVSFNDP-------AKKPKNVTEYELWVS 72
WL+ +D I+R L +WG +P YV F+ + +++ W +
Sbjct: 218 NWLKGGLKDLAITRDLVYWGIPVPNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWN 277
Query: 73 GRSKEEAEQ---KAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANG 129
E K I +F+ +++ WP
Sbjct: 278 NDEDAELIHFIGKDIVRFH--------------------------TIY-WPAMLMGLGLP 310
Query: 130 IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLE 181
+ ++VF H + G KMSKSLGNV+DP D++ L+ LL++ L
Sbjct: 311 LPTQVFSHGYLTV-EGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLG 361
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 47.1 bits (113), Expect = 1e-05
Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 23/131 (17%)
Query: 244 PNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKT 303
P V G HLGH + D R+ R++G L+ G D G + E EE T
Sbjct: 9 PYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAE-----EEGVT 63
Query: 304 RHEIGREKFIEKVWEWKKEKGDRIYEQMKLM--GSSLDWDRACFTMDPKLSRAVTEAFVI 361
+E D+ +E K + ++ +D T P+ V E F
Sbjct: 64 ----------------PQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKK 107
Query: 362 LHEAGDIYRSE 372
L+E G IY E
Sbjct: 108 LYENGYIYEGE 118
Score = 42.9 bits (102), Expect = 3e-04
Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 47/154 (30%)
Query: 27 QWLENN-RDWCISRQLW-WGHRIPAY-----YVSFNDP------AKKP-KNVTEYELWVS 72
WL+ +D I+R L+ WG +P YV F+ + W
Sbjct: 173 SWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWW-- 230
Query: 73 GRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFP--FSVFGWPDKQRLSANG- 129
+ I K DI F + +P G P R+ A+G
Sbjct: 231 -KDGWPELVHFIGK------DI----------IRFHAIYWPAMLLGAGLPLPTRIVAHGY 273
Query: 130 IHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVK 163
+ E G+KMSKS GNV+DP D+++
Sbjct: 274 LTVE-----------GKKMSKSRGNVVDPDDLLE 296
>gnl|CDD|151031 pfam10458, Val_tRNA-synt_C, Valyl tRNA synthetase tRNA binding arm.
This domain is found at the C-terminus of Valyl tRNA
synthetases.
Length = 66
Score = 41.5 bits (98), Expect = 4e-05
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 622 VDKEIERLNKKEEYLKQVIAKLKDQAAAEDYATKVPENVRTQNSEKLSEAEGELSRLPAA 681
V+KE RL K+ L++ I +L+ + + + K P V + KL+E E +L +L
Sbjct: 2 VEKERARLEKELAKLQKEIERLQKKLSNPGFVAKAPAEVVEEEKAKLAEYEEQLEKLKER 61
Query: 682 LAALK 686
L+ L
Sbjct: 62 LSQLG 66
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 45.9 bits (108), Expect = 7e-05
Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 27/140 (19%)
Query: 237 FVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAG--IATQVVVEK 294
FV+ P V H+G A T DSI R+ R+ GK ++ G D G IAT
Sbjct: 71 FVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAAN- 129
Query: 295 KLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLD--WDRACFTMDPKLS 352
GR E D I + + + LD +D+ T DPK
Sbjct: 130 -------------GRN---------PPEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHE 167
Query: 353 RAVTEAFVILHEAGDIYRSE 372
V E + + GDIYR++
Sbjct: 168 AIVKEFYARVFANGDIYRAD 187
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 44.4 bits (106), Expect = 2e-04
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 23/129 (17%)
Query: 246 VTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRH 305
G H+GHA T D++ R+ R++G + G D G Q + + + KT
Sbjct: 15 PNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHG---QKIQQAA--EKAGKT-- 67
Query: 306 EIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLD--WDRACFTMDPKLSRAVTEAFVILH 363
+E D I K + LD +D+ T D + + V + F L+
Sbjct: 68 --------------PQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFEKLY 113
Query: 364 EAGDIYRSE 372
E GDIY+ E
Sbjct: 114 EQGDIYKGE 122
Score = 42.5 bits (101), Expect = 8e-04
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 6/27 (22%)
Query: 143 AHG------RKMSKSLGNVIDPLDVVK 163
AHG KMSKS GNV+DP ++V
Sbjct: 289 AHGWWLMKDGKMSKSKGNVVDPEELVD 315
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 36.8 bits (86), Expect = 0.039
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 21/94 (22%)
Query: 124 RLSANGIHSEVFLHP---IVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNL 180
L G EV LH +VR G KMS GNV+ D++
Sbjct: 357 ELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLD----------------- 399
Query: 181 EAAERQRAADGQKRDYPQGIPE-CGTDALRFALA 213
EA ER +K + + I E G DA+R+A
Sbjct: 400 EAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADL 433
Score = 29.9 bits (68), Expect = 5.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 244 PNVTGTLHLGHALTNAVEDSITR 266
N TG LH+GH + DS+ R
Sbjct: 126 ANPTGPLHIGHLRNAIIGDSLAR 148
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 34.8 bits (80), Expect = 0.052
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 239 MVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWR 298
G LH+GH T D + + R G D AG KK
Sbjct: 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGEN 60
Query: 299 EEKKTRHEIGREKFIEKVWEW 319
+ I R I++ E+
Sbjct: 61 AKAFVERWIER---IKEDVEY 78
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 35.5 bits (83), Expect = 0.11
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 145 GRKMSKSLGNVIDPLDVVKGIS 166
G KMSKSLGN D++K
Sbjct: 264 GEKMSKSLGNFFTIRDLLKKYD 285
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 33.0 bits (76), Expect = 0.28
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 616 SQGLIKVDKEIERLNKKEEYLKQVIAKLKDQAAAEDYATKVPENVRTQNSEKLSEAEGEL 675
SQ L K+ +E+L K+ E LKQ IA+L+ Q + RT+ E+L + E EL
Sbjct: 61 SQALNKLKTRLEKLKKELEELKQRIAELQAQIEKL-KKGREETEERTELLEELKQLEKEL 119
Query: 676 SRLPAALAALK 686
+L A L +
Sbjct: 120 KKLKAELEKYE 130
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 33.9 bits (78), Expect = 0.35
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 598 KRFDARTRVTEL-ISLSISSQGLIKVDKEIERLNKKEEYLKQVIAKLKDQAAAEDYATKV 656
+ R+ EL LS +S+ + +++KEIE+L ++EE LK+ + +L++ ++ +
Sbjct: 696 ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE--- 752
Query: 657 PENVRTQNSEKLSEAEGELSRLPAALAALKL 687
+L E E + L L L+
Sbjct: 753 ----IENVKSELKELEARIEELEEDLHKLEE 779
>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated.
Length = 386
Score = 33.0 bits (76), Expect = 0.54
Identities = 36/134 (26%), Positives = 48/134 (35%), Gaps = 25/134 (18%)
Query: 414 VLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDE------RYKHLVDKVELTGRT 467
+ + D S EI V E LFA + V P DE Y +EL G
Sbjct: 80 TARLYGRQYDADS-EITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGR 138
Query: 468 PLRVPGYANPVDFGV-LASFAYKLEDGSGEIVVAT--------------TRLETLFADVA 512
+RV P DF V FA + + I++ T L L A
Sbjct: 139 AVRVA--LQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTD 196
Query: 513 VAVHPEDERYKHLV 526
+ V DE Y+H+V
Sbjct: 197 IYV-LSDEVYEHIV 209
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori [Protein synthesis, tRNA
aminoacylation].
Length = 566
Score = 32.7 bits (75), Expect = 0.64
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 229 GEKNPKGKFVMV-IPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTL 276
G K K K +++ N G LH+GH + DS+ R G +
Sbjct: 105 GSKKLKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVI 153
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 32.6 bits (75), Expect = 0.73
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 145 GRKMSKSLGNVIDPLDVVK 163
G KMSKSLGN I D++K
Sbjct: 266 GEKMSKSLGNFITVRDLLK 284
>gnl|CDD|226127 COG3599, DivIVA, Cell division initiation protein [Cell division
and chromosome partitioning].
Length = 212
Score = 32.0 bits (73), Expect = 0.81
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 22/93 (23%)
Query: 593 EFTGMKRFDARTRVTELISLSISSQGLIKVDKEIERLNKKEEYLKQVIAKLKDQAA---- 648
EF R V E + V + E+L + E L+ I +LK++
Sbjct: 15 EFGTGFRGYDEEEVDEFLDD---------VIDDYEQLLDENEDLEDEIDELKEELKEAAD 65
Query: 649 ---------AEDYATKVPENVRTQNSEKLSEAE 672
AE A ++ + + + L A
Sbjct: 66 AEDSQAIQQAETEAEELKQAAEAEADDILKRAS 98
>gnl|CDD|235645 PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.
Length = 408
Score = 32.4 bits (75), Expect = 0.90
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 138 PIVRDAHGRKMSKSLGNVI 156
P++ G+KM KS GN +
Sbjct: 223 PLLTGLDGKKMGKSEGNAV 241
>gnl|CDD|183721 PRK12749, PRK12749, quinate/shikimate dehydrogenase; Reviewed.
Length = 288
Score = 31.9 bits (72), Expect = 0.91
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 21/101 (20%)
Query: 570 AQRLNLPLITVFNEEGVIIGDYGEFTGMKR------FDARTRVTELI-----SLSISSQG 618
A +L + T+ N++G + G + TG R FD + + L+ S +I +QG
Sbjct: 84 AAKLVGAINTIVNDDGYLRGYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQG 143
Query: 619 LIKVDKEIERLNKKEEYLKQVIAKLKDQAAAEDYATKVPEN 659
I+ KEI+ N+++E+ + +A +A +V EN
Sbjct: 144 AIEGLKEIKLFNRRDEFFDKALA----------FAQRVNEN 174
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 31.7 bits (73), Expect = 1.5
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 206 DALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMV----IPPPNVTGTLHLGHALTNAVE 261
AL + A + GER GR KGK V+V N TG LH+GH + +
Sbjct: 86 AALAELVLAILEAGERYGR-----SDIGKGKKVVVEYVS---ANPTGPLHVGHLRSAVIG 137
Query: 262 DSITR 266
D++ R
Sbjct: 138 DALAR 142
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 31.0 bits (71), Expect = 1.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 145 GRKMSKSLGNVIDPLDVVKGIS 166
G KMSKSLGN I D +K
Sbjct: 172 GEKMSKSLGNFITVRDALKKYD 193
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. There
are at least three subgroups of ArgRS. One type contains
both characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. The second subtype lacks
the KMSKS motif; however, it has a lysine N-terminal to
the HIGH motif, which serves as the functional
counterpart to the second lysine of the KMSKS motif. A
third group, which is found primarily in archaea and a
few bacteria, lacks both the KMSKS motif and the HIGH
loop lysine.
Length = 212
Score = 30.6 bits (70), Expect = 2.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 244 PNVTGTLHLGHALTNAVEDSITR 266
N TG LH+GH + DS+ R
Sbjct: 9 ANPTGPLHVGHLRNAIIGDSLAR 31
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 31.2 bits (71), Expect = 2.1
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 144 HGRKMSKSLGNVI 156
G KMSKSL N I
Sbjct: 312 KGLKMSKSLKNFI 324
>gnl|CDD|216097 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R). Other tRNA
synthetase sub-families are too dissimilar to be
included. This family includes only arginyl tRNA
synthetase.
Length = 345
Score = 30.9 bits (70), Expect = 2.4
Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 25/219 (11%)
Query: 244 PNVTGTLHLGHALTNAVEDSITRWNRMKGKTTL-------WNPGCDHAGIATQVVVEKKL 296
PN +H+GH + + D+++R G + W + + +++L
Sbjct: 28 PNPAKPIHVGHLRSTIIGDALSRLLEFLGYDVVRENYVGDWGTQFGMLIASLEAAAKEEL 87
Query: 297 WREEKKTRHEIG-REKFIEKVWEWKKEKGDRIYEQMKLMGSSL-DWDRACFTMDPKLSRA 354
E G R + + E + + L+ S ++ + +
Sbjct: 88 TVPMPIQDLEDGYRGIKKDYIAE--EIFAKEARNAVVLLQSGDEEFREMWVLLIFDHIKQ 145
Query: 355 VTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDK---VELTGRTPLRVPGYANPVD 411
+ +++ D+ E + + A+ D++ D E G L + + + D
Sbjct: 146 ---SLNKIYDDFDVTLHEGESVYKGRMNDAVKDLK-DNGLVYENDGALWLFLTEFGDDKD 201
Query: 412 FGVLAS---FAYKLDDGSGEIVVATTRLETLFADVAVAV 447
V+ S Y + ++ A RLE D+ + V
Sbjct: 202 RVVIKSDGGALYI----TTDLAYAKERLEQRGFDLIIYV 236
>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional.
Length = 332
Score = 30.5 bits (69), Expect = 3.2
Identities = 13/15 (86%), Positives = 13/15 (86%), Gaps = 1/15 (6%)
Query: 145 GRKMSKSLGNVIDPL 159
GRKMSKS GNVI PL
Sbjct: 200 GRKMSKSYGNVI-PL 213
>gnl|CDD|219781 pfam08287, DASH_Spc19, Spc19. Spc19 is a component of the DASH
complex. The DASH complex associates with the spindle
pole body and is important for spindle and kinetochore
integrity during cell division.
Length = 150
Score = 29.2 bits (66), Expect = 3.7
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Query: 601 DARTRVTELISLSISSQGLIKVDKEIERLNKKEEYLKQ-----------VIAKLKDQAAA 649
A+ + E I + + L K++K + +L ++E+ LK ++ D
Sbjct: 53 AAQLSLLEEIEPQVQTL-LSKLEKSLSKLQREEDTLKAKYELNKGRLSNSESRSTDSRLG 111
Query: 650 EDYATKVPENVRTQNSEKLSEAE 672
+ + P N+ + EKL +
Sbjct: 112 LNKVSDDPVNMASSTEEKLERLK 134
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 30.1 bits (68), Expect = 4.0
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 623 DKEIERLNKKEEYLKQVIAKLKDQAAAEDYATKVPENVRTQNSEKLSEAEGE 674
K++E L E LK IA + AA A E + ++ GE
Sbjct: 223 QKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGE 274
Score = 29.3 bits (66), Expect = 6.8
Identities = 19/76 (25%), Positives = 35/76 (46%)
Query: 611 SLSISSQGLIKVDKEIERLNKKEEYLKQVIAKLKDQAAAEDYATKVPENVRTQNSEKLSE 670
S + + L ++ KEI L KK + AKL+ Q + + E + ++ L +
Sbjct: 32 SAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKK 91
Query: 671 AEGELSRLPAALAALK 686
+++ L A L AL+
Sbjct: 92 LRKQIADLNARLNALE 107
>gnl|CDD|130353 TIGR01286, nifK, nitrogenase molybdenum-iron protein beta chain.
This model represents the majority of known sequences of
the nitrogenase molybdenum-iron protein beta subunit. A
distinct clade in a phylogenetic tree contains
molybdenum-iron, vanadium-iron, and iron-iron forms of
nitrogenase beta subunit and is excluded from this
model. Nitrogenase, also called dinitrogenase, is
responsible for nitrogen fixation. Note: the trusted
cutoff score has recently been lowered to include an
additional family in which the beta subunit is shorter
by about 50 amino acids at the N-terminus. In species
with the shorter form of the beta subunit, the alpha
subunit has a novel insert of similar length [Central
intermediary metabolism, Nitrogen fixation].
Length = 515
Score = 30.2 bits (68), Expect = 4.1
Identities = 30/117 (25%), Positives = 39/117 (33%), Gaps = 13/117 (11%)
Query: 142 DAHGRKMSKSLGNVIDPLDVVKG--------ISLAGLQGRLLQDSNLEAAERQRAADGQK 193
S N+I + G +SL G+ LL D ADG+
Sbjct: 212 MDDKVVGSNGKINIIPGFETYIGNFREIKRILSLMGVGYTLLSDPEEVL---DTPADGEF 268
Query: 194 RDYPQGIP-ECGTDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVMVIPPPNVTGT 249
R Y G E DA A A + Q + K EK K + + P V GT
Sbjct: 269 RMYAGGTTLEEMKDAP-NAEATVLLQPYTLRKTKEYIEKTWKQETPKLNIPLGVKGT 324
>gnl|CDD|182904 PRK11020, PRK11020, hypothetical protein; Provisional.
Length = 118
Score = 28.8 bits (65), Expect = 4.1
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 625 EIERLNKKEEYLKQVIAKLKDQAAAEDYA---------TKVPENVRTQNSEKLSEAEGEL 675
EI+RL+ + + ++ +A + AE YA ++ S+KLS+ +L
Sbjct: 6 EIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKL 65
Query: 676 SRLP 679
+LP
Sbjct: 66 MKLP 69
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 30.2 bits (69), Expect = 4.4
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 609 LISLSISSQGLIKVDKEIERLNKKEEYLKQVIAKLKDQAAAEDYATKVPENVRTQNSEKL 668
L+ L + + D E+E L ++ E L+Q + +LK Q K + + +N +K
Sbjct: 354 LVKLCEQAAASPEYDTELEVLLQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKK 413
Query: 669 SEAE 672
+
Sbjct: 414 YKVP 417
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 29.4 bits (67), Expect = 4.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 62 KNVTEYELWVSGRSKEEAEQKA 83
+N+T + V G SK EAE++A
Sbjct: 95 ENITLAPIKVKGMSKAEAEERA 116
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 30.1 bits (68), Expect = 5.1
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 621 KVDKEIERLNKKEEYLKQVIAKLKDQAA-AEDYATK----------VPENVRTQNSEKLS 669
+ ++ +ERL E L++ + KL+ QA AE Y + + ++L
Sbjct: 183 RTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELE 242
Query: 670 EAEGELSRLPAALAALK 686
E E ELSRL L L+
Sbjct: 243 ELEEELSRLEEELEELQ 259
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 29.8 bits (67), Expect = 5.2
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 14/152 (9%)
Query: 550 DFGT--GAVKISPGHDHNDYEVAQRLNL-PLITVFNEEGVIIGDYGEFTGMKRFDARTRV 606
DFGT + I+ + L P F IG+ +KR +T
Sbjct: 25 DFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNKGLRSIKRLFGKTLK 84
Query: 607 TELISLSISS--QGLIKVDKEIERLN------KKEEYLKQVIAKLKDQAAAEDYATKVPE 658
L + ++ S + + V+ +LN + E ++ LK+Q A E T + +
Sbjct: 85 EILNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQ-AEEQLKTNITK 143
Query: 659 NVRTQNSEKLSEAEGE--LSRLPAALAALKLI 688
V T + A GE L+ A L+LI
Sbjct: 144 AVITVPAHFNDAARGEVMLAAKIAGFEVLRLI 175
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 30.0 bits (68), Expect = 5.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 233 PKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTL 276
P KF P P + G LHLGHA + + + ++R++G L
Sbjct: 43 PGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVL 86
>gnl|CDD|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.
Length = 510
Score = 29.8 bits (68), Expect = 5.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 142 DAHGRKMSKSLGNVIDPLDVVK 163
D G K+SKS GNVI D ++
Sbjct: 275 DKKGEKISKSKGNVITIEDWLE 296
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic
core domain. TyrRS is a homodimer which attaches Tyr to
the appropriate tRNA. TyrRS is a class I tRNA
synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formationof the enzyme bound
aminoacyl-adenylate. It contains the class I
characteristic HIGH and KMSKS motifs, which are involved
in ATP binding.
Length = 269
Score = 29.5 bits (67), Expect = 6.1
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 134 VFLHPIVRDAHGRKMSKSLGN-VIDPL 159
P++ G KMSKS GN + DP+
Sbjct: 182 GLTTPLLTGLDGGKMSKSEGNAIWDPV 208
>gnl|CDD|236804 PRK10948, PRK10948, cysteine desulfurase activator complex subunit
SufD; Provisional.
Length = 424
Score = 29.6 bits (67), Expect = 6.3
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 3/20 (15%)
Query: 28 WLENNRDWCISRQLWWGHRI 47
WLE+N+ +C SRQL H+
Sbjct: 288 WLEHNKGYCNSRQL---HKT 304
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 29.8 bits (67), Expect = 6.3
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 32/106 (30%)
Query: 334 MGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKV 393
+ S +D D+ FT ++ R + +A +A S+++ +
Sbjct: 232 IASHMDVDKVSFTGSTEVGRKIMQA------------------------AATSNLKQVSL 267
Query: 394 ELTGRTPLRVPGYAN---PVDFGVLASFAYKLDDGSGEIVVATTRL 436
EL G++PL + A+ VD +L F K GEI VA++R+
Sbjct: 268 ELGGKSPLLIFDDADVDMAVDLALLGIFYNK-----GEICVASSRV 308
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 29.2 bits (66), Expect = 6.5
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 145 GRKMSKSLGNVIDPLDVVK 163
G KMSKSLGN + DV+K
Sbjct: 251 GEKMSKSLGNFLTIRDVLK 269
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 29.0 bits (66), Expect = 7.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 63 NVTEYELWVSGRSKEEAEQKAI 84
NVT + V SK EA +KA+
Sbjct: 97 NVTLAPVKVKKLSKAEAREKAL 118
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 29.3 bits (66), Expect = 7.3
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 598 KRFDARTRVTELISLSISSQ---GLIKVDKEIERLNKKEEYLKQVIAKLKDQAAAEDYAT 654
+ AR ++ I L K+ EIE L K L + I K K Q +
Sbjct: 16 ESLKAR-GLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEI 74
Query: 655 KVPENVRTQNSEKLSEAEGELSRLPAALAALK 686
K ++L E + EL+ L AAL AL+
Sbjct: 75 K----------KELKELKEELTELSAALKALE 96
>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed.
Length = 398
Score = 29.1 bits (66), Expect = 7.4
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 145 GRKMSKSLGNVI----DPLDVVKGI 165
G+KMSKS GN I DP V K I
Sbjct: 262 GQKMSKSYGNTIGLREDPESVTKKI 286
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 29.4 bits (67), Expect = 8.1
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 18 PDHHTKTWYQWLENN-RDWCISRQLWWGHRIP 48
P + WL+ + I+R L WG +P
Sbjct: 211 PPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP 242
>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit. This family includes
prefoldin subunits that are not detected by pfam02996.
Length = 106
Score = 27.6 bits (62), Expect = 8.4
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 619 LIKVDKE--IERLNKKEEYLKQVIAKLKDQAAAEDYATKVPENVRTQNSEKL 668
L+K DKE E L +++E L++ I L+ Q + K E ++ + +
Sbjct: 55 LVKQDKEEVKEELEERKETLEKEIKTLEKQ---LEKLEKELEELKEELYKLF 103
>gnl|CDD|99798 cd06201, SiR_like2, Cytochrome p450- like alpha subunits of E. coli
sulfite reductase (SiR) multimerize with beta subunits
to catalyze the NADPH dependent reduction of sulfite to
sulfide. Beta subunits have an Fe4S4 cluster and a
siroheme, while the alpha subunits (cysJ gene) are of
the cytochrome p450 (CyPor) family having FAD and FMN as
prosthetic groups and utilizing NADPH. Cypor (including
cyt -450 reductase, nitric oxide synthase, and
methionine synthase reductase) are ferredoxin reductase
(FNR)-like proteins with an additional N-terminal FMN
domain and a connecting sub-domain inserted within the
flavin binding portion of the FNR-like domain. The
connecting domain orients the N-terminal FMN domain with
the C-terminal FNR domain. NADPH cytochrome p450
reductase (CYPOR) serves as an electron donor in several
oxygenase systems and is a component of nitric oxide
synthases and methionine synthase reductases. CYPOR
transfers two electrons from NADPH to the heme of
cytochrome p450 via FAD and FMN. Ferredoxin-NADP+
(oxido)reductase is an FAD-containing enzyme that
catalyzes the reversible electron transfer between
NADP(H) and electron carrier proteins such as ferredoxin
and flavodoxin. Isoforms of these flavoproteins (i.e.
having a non-covalently bound FAD as a prosthetic group)
are present in chloroplasts, mitochondria, and bacteria
in which they participate in a wide variety of redox
metabolic pathways. The C-terminal domain contains most
of the NADP(H) binding residues and the N-terminal
domain interacts non-covalently with the isoalloxazine
rings of the flavin molecule which lies largely in a
large gap betweed the two domains. Ferredoxin-NADP+
reductase first accepts one electron from reduced
ferredoxin to form a flavin semiquinone intermediate.
The enzyme then accepts a second electron to form FADH2
which then transfers two electrons and a proton to NADP+
to form NADPH.
Length = 289
Score = 28.8 bits (65), Expect = 8.5
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 145 GRKMSKSLGNVIDPLDVVKGISLA--GLQGRLLQD 177
R M++ + V++ + + +SL LQGR +D
Sbjct: 253 SRAMAQGVAAVLEEILAPQPLSLDELKLQGRYAED 287
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 29.3 bits (67), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 28 WLENN-RDWCISRQL-WWGHRIP 48
WLE +DW ISR ++G IP
Sbjct: 219 WLEEGLQDWDISRDAPYFGFEIP 241
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
Length = 333
Score = 29.1 bits (66), Expect = 9.2
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Query: 147 KMSKSLGNVI---DPLDVVK 163
KMSKSLGN I D D +K
Sbjct: 196 KMSKSLGNAIYLSDDADTIK 215
>gnl|CDD|214822 smart00798, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme. This is a
family of bifunctional enzymes catalysing the last two
steps in de novo purine biosynthesis. The bifunctional
enzyme is found in both prokaryotes and eukaryotes. The
second last step is catalysed by
5-aminoimidazole-4-carboxamide ribonucleotide
formyltransferase (AICARFT), this enzyme catalyses the
formylation of AICAR with 10-formyl-tetrahydrofolate to
yield FAICAR and tetrahydrofolate. The last step is
catalysed by IMP (Inosine monophosphate) cyclohydrolase
(IMPCHase), cyclizing FAICAR
(5-formylaminoimidazole-4-carboxamide ribonucleotide) to
IMP.
Length = 311
Score = 29.0 bits (66), Expect = 9.6
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 440 FADVAVAVHPEDERYKHLVDKVELTGRTPL 469
DV V V P D Y ++++++ G L
Sbjct: 5 HKDVTVVVDPAD--YAEVLEELKANGGLSL 32
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.401
Gapped
Lambda K H
0.267 0.0840 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,098,485
Number of extensions: 3658960
Number of successful extensions: 4203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4101
Number of HSP's successfully gapped: 222
Length of query: 689
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 585
Effective length of database: 6,324,786
Effective search space: 3699999810
Effective search space used: 3699999810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)