RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy944
(689 letters)
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 358 bits (920), Expect = e-112
Identities = 119/259 (45%), Positives = 164/259 (63%), Gaps = 29/259 (11%)
Query: 230 EKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQ 289
K+ K FV+ +PPPNVTG+LH+GHAL N+++D++ R+ RM+G +W PG DHAGIATQ
Sbjct: 29 PKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQ 88
Query: 290 VVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDP 349
VVVE+ L +E KTRH++GREKF+E+VW+WK+E G I +Q+K +G+S DW R FTMD
Sbjct: 89 VVVERLL-LKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDE 147
Query: 350 KLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANP 409
K SRAV AF + G YR+ RLV+W ++ +SD+EV+ G+
Sbjct: 148 KRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGK----------- 196
Query: 410 VDFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDK---VELTGR 466
L + Y++ +G G I +AT R ET+FAD A+AVHPEDERY+HL+ K + LT
Sbjct: 197 -----LYTLRYEV-EGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEV 250
Query: 467 TPLRVP----GYANPVDFG 481
+P DFG
Sbjct: 251 ---WIPILADPAVEK-DFG 265
Score = 226 bits (578), Expect = 8e-64
Identities = 73/250 (29%), Positives = 103/250 (41%), Gaps = 84/250 (33%)
Query: 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKK 60
+AE+ ++ ++ G++ +P+ K WLEN +DW ISRQLWWGH+IPA+Y
Sbjct: 366 LAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWY--------- 416
Query: 61 PKNVTEYELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWP 120
+ + R + E + L++DEDV DTWFSS L+P S GWP
Sbjct: 417 ---CEDCQAVNVPRPERYLEDPTSCEA---CGSPRLKRDEDVFDTWFSSALWPLSTLGWP 470
Query: 121 DKQ------------------------RLSANGIH-------SEVFLHPIVRDAHGRKMS 149
++ R+ +G H V LH +V D G+KMS
Sbjct: 471 EETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMS 530
Query: 150 KSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAERQRAADGQKRDYPQGIPECGTDALR 209
KS GNVIDPL++ + G DALR
Sbjct: 531 KSKGNVIDPLEM--------------------------------------VERYGADALR 552
Query: 210 FALAAYMSQG 219
FAL + G
Sbjct: 553 FALIYLATGG 562
Score = 207 bits (528), Expect = 6e-57
Identities = 71/161 (44%), Positives = 96/161 (59%), Gaps = 16/161 (9%)
Query: 481 GVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFCERKIP 540
G L + Y++ +G G I +AT R ET+FAD A+AVHPEDERY+HL+GK P E IP
Sbjct: 195 GKLYTLRYEV-EGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIP 253
Query: 541 ILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY--GEFTGMK 598
ILAD VEKDFGTGA+K++P HD DYE+ +R L ++V N EG + G+ G+
Sbjct: 254 ILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLD 313
Query: 599 RFDARTRVTELISLSISSQGLIKVDKEIERLNKKEEYLKQV 639
RF+AR + EL +E L K+E+Y +
Sbjct: 314 RFEARRKAVELF-------------REAGHLVKEEDYTIAL 341
Score = 58.7 bits (143), Expect = 4e-09
Identities = 16/85 (18%), Positives = 38/85 (44%)
Query: 601 DARTRVTELISLSISSQGLIKVDKEIERLNKKEEYLKQVIAKLKDQAAAEDYATKVPENV 660
A + ++ + +GL+ V++ R K+ + L + + + + A+ + K P+ V
Sbjct: 777 KALVKAMPRVTARMPLEGLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEV 836
Query: 661 RTQNSEKLSEAEGELSRLPAALAAL 685
+L E + R+ AL+ +
Sbjct: 837 VEAEEARLKENLEQAERIREALSQI 861
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus,
translation, amino acid, structural genomics; 1.70A
{Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Length = 147
Score = 197 bits (504), Expect = 4e-60
Identities = 68/147 (46%), Positives = 91/147 (61%), Gaps = 8/147 (5%)
Query: 481 GVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFCERKIP 540
G L + Y++ +G G I +AT R ET+FAD A+AVHPEDERY+HL+GK P E IP
Sbjct: 4 GKLYTLRYEV-EGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIP 62
Query: 541 ILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY--GEFTGMK 598
ILAD VEKDFGTGA+K++P HD DYE+ +R L ++V N EG + G+ G+
Sbjct: 63 ILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLD 122
Query: 599 RFDARTRVTELISLSISSQG-LIKVDK 624
RF+AR + E G L+K +
Sbjct: 123 RFEARRKAVE----LFREAGHLVKEED 145
Score = 83.7 bits (208), Expect = 3e-19
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 12/76 (15%)
Query: 413 GVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDK---VELTGRTPL 469
G L + Y+++ G G I +AT R ET+FAD A+AVHPEDERY+HL+ K + LT
Sbjct: 4 GKLYTLRYEVE-GGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEV--- 59
Query: 470 RVP----GYANPVDFG 481
+P DFG
Sbjct: 60 WIPILADPAVEK-DFG 74
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 200 bits (510), Expect = 2e-54
Identities = 78/358 (21%), Positives = 127/358 (35%), Gaps = 51/358 (14%)
Query: 225 RKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHA 284
+I +K + KF + + P ++G LH+GHA T + D I R+ RM+G L+
Sbjct: 24 EPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHIT 83
Query: 285 GIATQVVVEK-------KLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSS 337
G + E+ +W + E K E G S
Sbjct: 84 GSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFS 143
Query: 338 LDWDRACFTMD--PKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVEL 395
+DW R +T P S+ + F L E G I + V W + + + D ++
Sbjct: 144 VDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDL----- 198
Query: 396 TGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYK 455
+ G P+ ++ F + + + AT R ET++ + V+P K
Sbjct: 199 -------MEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVK 251
Query: 456 HLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAV 515
V + V AYKL EI V
Sbjct: 252 AKVR-------------RKDKEETWIVSKEAAYKLSFQDREIEVI--------------- 283
Query: 516 HPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRL 573
E+ + + L+GK + +P ++ IL FV+ D TG V P H D+ + L
Sbjct: 284 --EEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDL 339
Score = 68.5 bits (167), Expect = 4e-12
Identities = 23/184 (12%), Positives = 51/184 (27%), Gaps = 34/184 (18%)
Query: 13 ELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVS 72
+KI+P+ + ++ +R++ G +P + + +S
Sbjct: 484 RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIES-LSDSTIYMAYYTIS 542
Query: 73 GRSKEEAEQKAISKFNVTQADI----SLRQDEDVLDTWFSSGLFPFSVFGWPDK------ 122
+ ++ + +T ED P + +
Sbjct: 543 RHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWY 602
Query: 123 ---QRLSANGIHS--------------------EVFLHPIVRDAHGRKMSKSLGNVIDPL 159
R S + + G+KMSKS GNV++ +
Sbjct: 603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFI 662
Query: 160 DVVK 163
D ++
Sbjct: 663 DAIE 666
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 190 bits (484), Expect = 2e-51
Identities = 90/429 (20%), Positives = 157/429 (36%), Gaps = 55/429 (12%)
Query: 225 RKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHA 284
+I +K + KF + + P ++G LH+GHA T + D I R+ RM+G L+
Sbjct: 24 EPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHIT 83
Query: 285 GIATQVVVEK-------KLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSS 337
G + E+ +W + E K E G S
Sbjct: 84 GSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFS 143
Query: 338 LDWDRACFTMD--PKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVEL 395
+DW R +T P S+ + F L E G I + V W + + + D ++
Sbjct: 144 VDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDL----- 198
Query: 396 TGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYK 455
+ G P+ ++ F + + + AT R ET++ + V+P K
Sbjct: 199 -------MEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVK 251
Query: 456 HLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAV 515
V + + + V AYKL EI V
Sbjct: 252 AKVRRKDKEE-------------TWIVSKEAAYKLSFQDREIEVI--------------- 283
Query: 516 HPEDERYKHLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRL-- 573
E+ + + L+GK + +P ++ IL FV+ D TG V P H D+ + L
Sbjct: 284 --EEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKR 341
Query: 574 NLPLITVFNEEGVIIGDYGEFTGMK--RFDARTRVTELISLSISSQGLIKVDKEIERLNK 631
++ ++ + I+ + + +K + V E+ L I SQ + ++ +
Sbjct: 342 ETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIY 401
Query: 632 KEEYLKQVI 640
K EY K +
Sbjct: 402 KAEYHKGIF 410
Score = 70.0 bits (171), Expect = 2e-12
Identities = 26/193 (13%), Positives = 50/193 (25%), Gaps = 52/193 (26%)
Query: 13 ELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVS 72
+KI+P+ + ++ +R++ G +P + + T Y
Sbjct: 484 RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDP---EWVIESLSDSTIYMA--- 537
Query: 73 GRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHS 132
+ I+K + + D F K + A IH
Sbjct: 538 ----YYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHE 593
Query: 133 ------------------------------------------EVFLHPIVRDAHGRKMSK 150
+ G+KMSK
Sbjct: 594 MKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSK 653
Query: 151 SLGNVIDPLDVVK 163
S GNV++ +D ++
Sbjct: 654 SKGNVLNFIDAIE 666
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 144 bits (366), Expect = 4e-36
Identities = 84/391 (21%), Positives = 149/391 (38%), Gaps = 69/391 (17%)
Query: 225 RKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHA 284
+KS+ + ++ + PP G H+GHA + +D R+ M+G G D
Sbjct: 28 QKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTH 87
Query: 285 GIATQVVVEKKLWREEKKTRHEIGREKFIEK----VWEWKKEKGDRIYEQMKLMGSSLDW 340
G+ ++ VEKKL + K+ G E+F + V+ ++KE + + +D
Sbjct: 88 GLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKE----WEAFTERIAYWVDL 143
Query: 341 DRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTP 400
+ A T++P ++ + L + G +YR ++V + + +S EV
Sbjct: 144 EDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVAL-------- 195
Query: 401 LRVPGYANPVDFGVLASFAYKLDDGSGE----IVVATTRLETLFADVAVAVHPEDERYKH 456
GY D V F K G +++ TT TL +VA AVHPE
Sbjct: 196 ----GYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYT---- 247
Query: 457 LVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVH 516
YA + G +++ L + +
Sbjct: 248 -----------------YA-------------AFQVGDEALILEEGLGRKLLGEGTQVL- 276
Query: 517 PEDERYK--HLVGKLLVHPF---CERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQ 571
+ + L G P+ E+ ++ +V ++ GTG V +P D E A+
Sbjct: 277 ---KTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETAR 333
Query: 572 RLNLPLITVFNEEGVIIGDYGEFTGMKRFDA 602
LPL+ +EEG ++ + F G+ +A
Sbjct: 334 VYGLPLLKTVDEEGKLLVE--PFKGLYFREA 362
Score = 83.8 bits (208), Expect = 8e-17
Identities = 46/217 (21%), Positives = 82/217 (37%), Gaps = 78/217 (35%)
Query: 3 EKAVQAVKTGELKIIPDH-HTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKP 61
++ ++ + + +P H + +WL+N DW +SR +WG +P
Sbjct: 413 DELIRNNQE--IHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLP------------- 457
Query: 62 KNVTEYELWVSGRSKEE------AEQKAISKFNVTQA-DI----------------SLRQ 98
+WV +E E KA + + + D ++R+
Sbjct: 458 -------IWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRR 510
Query: 99 DEDVLDTWFSSGLFPFSVFGWP--DKQRLSAN--------GI-------HS--------- 132
V+D W+ SG PF+ +P ++ + GI +S
Sbjct: 511 VPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLF 570
Query: 133 ------EVFLHPIVRDAHGRKMSKSLGNVIDPLDVVK 163
V H ++ D G+KMSKS GNV+DP D+++
Sbjct: 571 GSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIR 607
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 130 bits (330), Expect = 1e-31
Identities = 92/378 (24%), Positives = 161/378 (42%), Gaps = 67/378 (17%)
Query: 243 PPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCD-HAGIATQVVVEKKLWREEK 301
PP G LH+GHAL ++D I R+ M+G + PG D H G+ + + KK
Sbjct: 56 PPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTH-GLPIEQALTKK-----G 109
Query: 302 KTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVI 361
R ++ +F EK E+ E+ + + + +G D++ T+ P+ A F
Sbjct: 110 VDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGE 169
Query: 362 LHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASF--- 418
+ + G IY+ ++ V+WS S +S++++ E++ Y + + +F
Sbjct: 170 MADKGLIYKGKKPVYWSPSSESSLAEAEIE--------------YHDKRSASIYVAFNVK 215
Query: 419 -AYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANP 477
+ D + ++ TT T+ ++VA+ VHPE
Sbjct: 216 DDKGVVDADAKFIIWTTTPWTIPSNVAITVHPE--------------------------- 248
Query: 478 VDFGVLASFAYKLEDGSGE-IVVATTRLETLFADVAVAVHPEDERYKHLVGKLLV----- 531
Y + +GE ++A + + + + K GK L
Sbjct: 249 --------LKYGQYNVNGEKYIIAEALSDAVAEALDWD-KASIKLEKEYTGKELEWVVAQ 299
Query: 532 HPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY 591
HPF +R+ ++ V D GTG V +PGH +DY V Q+ LP+I+ +++GV +
Sbjct: 300 HPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEG 359
Query: 592 GEFTGMKRFDARTRVTEL 609
G+F GM A VT+L
Sbjct: 360 GQFEGMFYDKANKAVTDL 377
Score = 68.0 bits (167), Expect = 7e-12
Identities = 43/186 (23%), Positives = 67/186 (36%), Gaps = 51/186 (27%)
Query: 24 TWY-QWLEN-------NR-DWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEY------- 67
+ W + +R +W ISRQ WG +P +Y + + +
Sbjct: 431 NFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKE-TVNHVADLFAE 489
Query: 68 ---ELWVSGRSKEEAEQKAISKFNVTQAD-ISLRQDEDVLDTWFSSGLFPFSV------F 117
+W + EA+ F + + ++ D++D WF SG V
Sbjct: 490 HGSNIW----FEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPEL 545
Query: 118 GWP--------DKQR-------LSANGIHS-----EVFLHPIVRDAHGRKMSKSLGNVID 157
+P D+ R ++ + H V D G+KMSKSLGNVI
Sbjct: 546 SFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIV 605
Query: 158 PLDVVK 163
P VVK
Sbjct: 606 PDQVVK 611
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain,
hydrolysis of MIS-charged trnas, benzoxaborole,
anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB:
2wfe_A*
Length = 261
Score = 75.4 bits (185), Expect = 3e-15
Identities = 36/238 (15%), Positives = 69/238 (28%), Gaps = 41/238 (17%)
Query: 409 PVDFGVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTP 468
P + + + + +V AT R ET++ V P+ +
Sbjct: 15 PQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKID---------------- 58
Query: 469 LRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERY------ 522
Y + G+G+ + T R + + +
Sbjct: 59 -----YG-------------VFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTING 100
Query: 523 KHLVGKLLVHPFCERK-IPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVF 581
K L+G + P+ K + +L V GTG V P +D+ + L
Sbjct: 101 KTLIGSRIDAPYAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYG 160
Query: 582 NEEGVIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVDKEIERLNKKEEYLKQV 639
E+ + D +++ + + L I S + L KE +
Sbjct: 161 IEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGT 218
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase;
2.60A {Giardia intestinalis}
Length = 311
Score = 75.6 bits (185), Expect = 5e-15
Identities = 37/293 (12%), Positives = 80/293 (27%), Gaps = 58/293 (19%)
Query: 358 AFVILHEAGDIYRSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGVLAS 417
++ + E + +I++ Y+NP + +
Sbjct: 22 TTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLP------------RFYSNPKNKAIFDQ 69
Query: 418 F-AYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYAN 476
++D+ ++ AT R ET+ V P Y
Sbjct: 70 LWENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGR---------------------YG- 107
Query: 477 PVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERY--------KHLVGK 528
E+++ + A + + L+
Sbjct: 108 ------------AYYINKDEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLA 155
Query: 529 LLVHPFCERK-IPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVI 587
+ P + I +L ++ D GTG V P +DY + + + + GV
Sbjct: 156 TVRAPLSPYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVD 215
Query: 588 IGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVDKEIERLN--KKEEYLKQ 638
+G E + L ++ + + + + +L K+ Y K
Sbjct: 216 VGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKG 268
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 72.6 bits (179), Expect = 2e-13
Identities = 42/173 (24%), Positives = 61/173 (35%), Gaps = 49/173 (28%)
Query: 484 ASFAYKLEDGSGEIVVATTRLETLF-------------ADVAVAVHPEDERYKHLV---- 526
+ + D + V TTR +T A A +PE +
Sbjct: 250 VEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTK 309
Query: 527 ----------------GKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVA 570
G VHP +IP+ A +FV ++GTGAV PGHD DYE A
Sbjct: 310 VAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFA 369
Query: 571 QRLNLPLITV---------------FNEEGVIIGDYGEFTGMKRFDARTRVTE 608
+ L + V E+GV+ + GEF G+ A + +
Sbjct: 370 SKYGLNIKPVILAADGSEPDLSQQALTEKGVLF-NSGEFNGLDHEAAFNAIAD 421
Score = 42.9 bits (102), Expect = 4e-04
Identities = 35/141 (24%), Positives = 49/141 (34%), Gaps = 39/141 (27%)
Query: 248 GTLHLGHALTNAVEDSITRWNRMKGKTTL----WNPGCD-------HAGIATQVVVEKKL 296
G LH+GH + D I R+ RM GK L W D A +
Sbjct: 66 GRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGW----DAFGLPAEGAAVKNNT--APAP 119
Query: 297 WREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVT 356
W T I K Q+K++G DW R T P+ R
Sbjct: 120 W-----TYDNIAYMK-----------------NQLKMLGFGYDWSRELATCTPEYYRWEQ 157
Query: 357 EAFVILHEAGDIYRSERLVHW 377
+ F L++ G +Y+ V+W
Sbjct: 158 KFFTELYKKGLVYKKTSAVNW 178
Score = 38.3 bits (90), Expect = 0.008
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 89 VTQ----ADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAH 144
+ Q AD E+ W S P D++ + +
Sbjct: 584 LCQGMVLADAFYYVGENGERNWVS----PVDAIVERDEKGRIVKAKDAAGHELVYTGMS- 638
Query: 145 GRKMSKSLGNVIDPLDVVK 163
KMSKS N IDP +V+
Sbjct: 639 --KMSKSKNNGIDPQVMVE 655
Score = 35.6 bits (83), Expect = 0.067
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 11/33 (33%)
Query: 27 QWLENN-----------RDWCISRQLWWGHRIP 48
L RDW +SRQ +WG IP
Sbjct: 421 DKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIP 453
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A*
1wk8_A* 1udz_A 1ue0_A
Length = 186
Score = 67.9 bits (167), Expect = 2e-13
Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 51/195 (26%)
Query: 419 AYKLDDGSGE------IVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVP 472
+ L + +++ TT TL +VA AVHPE
Sbjct: 9 RFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYT-------------------- 48
Query: 473 GYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYK--HLVGKLL 530
YA + G +++ L + + + + L G
Sbjct: 49 -YA-------------AFQVGDEALILEEGLGRKLLGEGTPVL----KTFPGKALEGLPY 90
Query: 531 VHPFC---ERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVI 587
P+ E+ ++ +V ++ GTG V +P D E A+ LPL+ +EEG +
Sbjct: 91 TPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKL 150
Query: 588 IGDYGEFTGMKRFDA 602
+ + F G+ +A
Sbjct: 151 LVE--PFKGLYFREA 163
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia
coli} PDB: 2ajh_A 2aji_A
Length = 196
Score = 67.9 bits (167), Expect = 3e-13
Identities = 42/174 (24%), Positives = 61/174 (35%), Gaps = 51/174 (29%)
Query: 484 ASFAYKLEDGSGEIVVATTRLETLF-------------ADVAVAVHPEDERYKHLV---- 526
+ + D + V TTR +T A A +PE +
Sbjct: 13 VEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTK 72
Query: 527 ----------------GKLLVHPFCERKIPI-LADSFVEKDFGTGAVKISPGHDHNDYEV 569
G VHP +IP+ A+ FV ++GTGAV PGHD DYE
Sbjct: 73 VAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAAN-FVLMEYGTGAVMAVPGHDQRDYEF 131
Query: 570 AQRLNLPLITV---------------FNEEGVIIGDYGEFTGMKRFDARTRVTE 608
A + L + V E+GV+ + GEF G+ A + +
Sbjct: 132 ASKYGLNIKPVILAADGSEPDLSQQALTEKGVLF-NSGEFNGLDHEAAFNAIAD 184
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 69.5 bits (171), Expect = 2e-12
Identities = 41/175 (23%), Positives = 64/175 (36%), Gaps = 51/175 (29%)
Query: 484 ASFAYKLEDGSGEIVVATTRLETLFAD--VAVAV-HP------------EDERYKHLV-- 526
A + +E I V TTR +TLF + +A HP E Y
Sbjct: 230 AEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKR 289
Query: 527 ------------------GKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYE 568
G ++P +IPI +V +GTGA+ P HD DYE
Sbjct: 290 KTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYE 349
Query: 569 VAQRLNLPLITV---------------FNEEGVIIGDYGEFTGMKRFDARTRVTE 608
A++ LP+ V + E G+++ + G F G + + + +V
Sbjct: 350 FARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMV-NSGPFDGTESEEGKRKVIA 403
Score = 43.7 bits (104), Expect = 2e-04
Identities = 38/141 (26%), Positives = 55/141 (39%), Gaps = 39/141 (27%)
Query: 248 GTLHLGHALTNAVEDSITRWNRMKGKTTL----WNPGCD-------HAGIATQVVVEKKL 296
G LH+GH + D + R+ RM+G L W D +A + V K
Sbjct: 46 GDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGW----DAFGLPAENAALKFGV--HPKD 99
Query: 297 WREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVT 356
W T I + E ++LMG DWDR T +P+ R
Sbjct: 100 W-----TYANI-----------------RQAKESLRLMGILYDWDREVTTCEPEYYRWNQ 137
Query: 357 EAFVILHEAGDIYRSERLVHW 377
F+ + E G YR++ LV+W
Sbjct: 138 WIFLKMWEKGLAYRAKGLVNW 158
Score = 34.1 bits (79), Expect = 0.20
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 11/33 (33%)
Query: 27 QWLENN-----------RDWCISRQLWWGHRIP 48
WLE RDW ISRQ +WG IP
Sbjct: 403 AWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIP 435
Score = 31.4 bits (72), Expect = 1.1
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 147 KMSKSLGNVIDPLDVVK 163
MSKS GN + VK
Sbjct: 637 VMSKSKGNGVMVGPFVK 653
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase,
aminoacyl-tRNA synthetase, ATP-binding, nucleotide-
protein biosynthesis; 1.77A {Aquifex aeolicus} PDB:
3pz0_A 3pz5_A
Length = 219
Score = 61.1 bits (149), Expect = 1e-10
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 16/92 (17%)
Query: 531 VHPFCERKIPI-LADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITV--------- 580
+P KIP+ A+ +V ++GTGA+ P HD D+E A++ +LP+ V
Sbjct: 114 TNPANGEKIPVWSAN-YVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDF 172
Query: 581 ----FNEEGVIIGDYGEFTGMKRFDARTRVTE 608
+ +G ++ + F G+ A+ ++TE
Sbjct: 173 EKGAYEGKGTLV-NSDGFDGLDSETAKRKITE 203
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase,
phosphoprotein, editing domain, nucleotide-binding,
hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Length = 252
Score = 60.4 bits (146), Expect = 3e-10
Identities = 36/230 (15%), Positives = 66/230 (28%), Gaps = 49/230 (21%)
Query: 421 KLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDF 480
L + +V AT R ET+F V P+ + Y
Sbjct: 24 GLKGKNIFLVAATLRPETMFGQTNCWVRPDMK---------------------YI----- 57
Query: 481 GVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYK--------HLVGKLLVH 532
++ +G I + ++ ++G L
Sbjct: 58 ------GFETVNGDIFICTQKAARNMSYQGFT----KDNGVVPVVKELMGEEILGASLSA 107
Query: 533 PFCERK-IPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITV----FNEEGVI 587
P K I +L +++D GTG V P +D + L ++ V+
Sbjct: 108 PLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVL 167
Query: 588 IGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVDKEIERLNKKEEYLK 637
+ + F + VT L I SQ + E + + + +
Sbjct: 168 PFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYE 217
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 1e-08
Identities = 85/627 (13%), Positives = 178/627 (28%), Gaps = 196/627 (31%)
Query: 29 LENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKEEAEQKAISKFN 88
L N + +S P+ +++ R + + + +K+N
Sbjct: 87 LRINYKFLMSP----------IKTEQRQPSM------MTRMYIEQRDRLYNDNQVFAKYN 130
Query: 89 VT---------QADISLRQDEDV--------------LDTWFSSGL---FPFSVFGWPD- 121
V+ QA + LR ++V LD S + F +F W +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNL 189
Query: 122 KQRLSANGI--HSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDS- 178
K S + + L+ I + R S N+ + ++ L+ + ++
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 179 ----NLEAAERQRAADGQ-K-----RDYPQGIPECGTDALRFALAAYMSQGERTGRRKSI 228
N++ A+ A + K R + + TD L A ++S ++
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRF--KQV----TDFLSAATTTHISLDH---HSMTL 298
Query: 229 GEKNPKG---KFVMVIP---PPNVTGTLHLGHALTNA-VEDSITRWNRMKGKTTLWNPGC 281
K K++ P P V T ++ + D + W+ K + C
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK------HVNC 352
Query: 282 DHAGIATQVVVEKKLWREEKKTRHE---IGRE------KFIEKVWEWKKEKGDRIYEQMK 332
D + + L E + + + + +W + + M
Sbjct: 353 DKLTTIIESSLN-VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----SDVMV 406
Query: 333 LMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERL-------VHWSCSLKSAI 385
++ + PK S + + IY ++ +H +S +
Sbjct: 407 VVNKLH--KYSLVEKQPKEST------ISIP---SIYLELKVKLENEYALH-----RSIV 450
Query: 386 -SDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRLETLFADVA 444
+ P + Y +++ I
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQY----------FYSH--------IG-------------- 478
Query: 445 VAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRL 504
+ HL +E R L + +DF L K+ A+ +
Sbjct: 479 ---------H-HL-KNIEHPERMTLFRMVF---LDFRFLEQ---KIRH-DSTAWNASGSI 520
Query: 505 ETLFADVAVAVHPEDERYK-HLVGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHD 563
+ + YK ++ P ER + + D F+ P +
Sbjct: 521 LNTLQQL--------KFYKPYICDN---DPKYERLVNAILD-FL------------PKIE 556
Query: 564 HNDYEVAQRLNLPLITVFNEEGVIIGD 590
N ++ +L I + E+ I +
Sbjct: 557 ENLIC-SKYTDLLRIALMAEDEAIFEE 582
Score = 54.1 bits (129), Expect = 1e-07
Identities = 86/647 (13%), Positives = 188/647 (29%), Gaps = 182/647 (28%)
Query: 133 EVFLHPIVRDAHGRKMSKSLGNVI--DPLDVVKGISLAGLQGRLLQDSNLEAAERQRAA- 189
VF V + + + +++ + +D + A L + L E
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 190 --DGQKRDYPQGIPECGTDALRFALAAYMSQG-ERTGRRKS-IGEKNPKGKFVMVIPPPN 245
+ + +Y F ++ ++ + + + I +++ V N
Sbjct: 83 VEEVLRINYK------------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 246 VTGTLHLGHALTNAV-EDSITRW---NRMK--GKTTLWNPGCDHAGIATQVVVEKKLWRE 299
V+ L L A+ E + + + GKT + A V + K+
Sbjct: 131 VS-RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV----------ALDVCLSYKV--- 176
Query: 300 EKKTRHEIGREKFIEKVWEW----KKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAV 355
+ K K++ W + + E ++ + + +DP +
Sbjct: 177 ---------QCKMDFKIF-WLNLKNCNSPETVLEMLQKL---------LYQIDPNWTSRS 217
Query: 356 TEAFVILHEAGDIY-RSERLVHWSCSLKSAISDIEVDKVELTGRTPLRVPGYANPVDFGV 414
+ I I RL+ ++ + + + V+ +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSK-PYENCL--LVLLNVQ----------------NAKA 258
Query: 415 LASFAYKLDDGSGEIVVATTRLE--TLFADVAVAVHPEDERYKHLVDKVEL-------TG 465
+F + S +I++ TTR + T F A H + + + E+
Sbjct: 259 WNAF-----NLSCKILL-TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 466 RTPLRVPGYA---NPVDFGVLASFAYKLEDGSGEI----VVATTRLETLFADVAVAVHPE 518
P +P NP L+ A + DG V +L T+ + ++ V
Sbjct: 313 CRPQDLPREVLTTNPR---RLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESSLNVLEP 368
Query: 519 DERYKHLVGKLLVHPFCER-KIP------------------ILAD----SFVEKDFGTGA 555
E Y+ + +L V F IP ++ S VEK
Sbjct: 369 AE-YRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 556 VKISPGHD---------------H----NDYEVAQRLNLPLITVFNEEGVI---IG---- 589
+ I H + Y + + + + + IG
Sbjct: 426 ISI---PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 590 ---DYGEFTGMK------RF-DARTRVTELISLSISSQG--LIKVDKEIERLNKKEEYLK 637
T + RF + + R + S L ++ + + +
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 638 QVIAKLKD---QAAAEDYATKVPENVR----TQNSEKLSEAEGELSR 677
+++ + D + +K + +R ++ EA ++ R
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 35.2 bits (80), Expect = 0.075
Identities = 45/344 (13%), Positives = 99/344 (28%), Gaps = 86/344 (25%)
Query: 380 SLKSAISDIEVDKVELTGRTPLRVPGYANPVD--FGVLASFAYKLDDGSGEIVVATTRLE 437
KS +S E+D + + + F L L E+V +
Sbjct: 41 MPKSILSKEEIDHI-------IMSKDAVSGTLRLFWTL------LSKQE-EMV------Q 80
Query: 438 TLFADVAVAVHPEDERYKHLVDKVELTGRTP-LRVPGYANPVD--FGVLASFAYKLEDGS 494
+V YK L+ ++ R P + Y D + FA K
Sbjct: 81 KFVEEV------LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYN--- 130
Query: 495 GEIVVATTRLETLFADVAVAVHPEDERYKHLV-------GK-LLVHPFCERKIPILADSF 546
+RL+ + + A+ E K+++ GK + + +
Sbjct: 131 ------VSRLQ-PYLKLRQALL-ELRPAKNVLIDGVLGSGKTWVA-------LDVCLSYK 175
Query: 547 VEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRV 606
V+ ++ + ++ V + L L+ + D+ ++ + +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 607 TELISLSISSQGLIKVD-----KEIERLNKKEEYLK-QVIAKLKDQAAAEDYATKVPENV 660
L+ L+ + K N L +++ + + + + ++
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFN-----LSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 661 RTQNSEK-LSEAEGE----------LSRLPA-ALA----ALKLI 688
+ L+ E + LP L L +I
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Score = 30.2 bits (67), Expect = 2.9
Identities = 18/129 (13%), Positives = 44/129 (34%), Gaps = 25/129 (19%)
Query: 562 HDHNDYEVAQR--LNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTELISLSISSQ-- 617
H H D+E + +++VF + + + FD + V ++ +S +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDA--FVDN---------FDCKD-VQDMPKSILSKEEI 51
Query: 618 -GLIKVDKEIERLNKK----EEYLKQVIAKLKDQAAAEDY---ATKVPENVRTQNSEKLS 669
+I + + ++++ K ++ +Y + + R Q S
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-QPSMMTR 110
Query: 670 EAEGELSRL 678
+ RL
Sbjct: 111 MYIEQRDRL 119
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 1e-08
Identities = 81/492 (16%), Positives = 139/492 (28%), Gaps = 225/492 (45%)
Query: 27 QWLEN-----NRDWCIS----------RQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWV 71
+WLEN ++D+ +S QL H Y V+ P + Y
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQL--AH----YVVTAKLLGFTPGELRSYLKGA 270
Query: 72 SGRSKEEAEQKAISKFNVTQADISLRQDED--------VLDTWFSSGL-----FPFSVFG 118
+G S + + VT I+ + + F G+ +P +
Sbjct: 271 TGHS------QGL----VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL- 319
Query: 119 WPDKQR-------------LSANGIHSEVFLHPIVR--DAH---GRKMSKSLGNVIDPLD 160
P LS + + ++ + V ++H G+++ SL N L
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNL-TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL- 377
Query: 161 VVKG--ISLAGLQGRLLQDSNLEAAERQRAADG--QKRDYPQGIPECGTDALRFALAAYM 216
VV G SL GL L + +A G Q R IP
Sbjct: 378 VVSGPPQSLYGLNLTL---------RKAKAPSGLDQSR-----IP--------------F 409
Query: 217 SQGERTGRRKSIGEKNPKG--KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKT 274
S+ RK K +F+ V P H H L A +
Sbjct: 410 SE------RK------LKFSNRFLPVASP------FH-SHLLVPASD------------- 437
Query: 275 TLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGD-RI--YEQM 331
++ K L + + + D +I Y
Sbjct: 438 ----------------LINKDLVKNN----------------VSFNAK--DIQIPVY--- 460
Query: 332 KLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEVD 391
+ D + +S + + I+ V W + + + I
Sbjct: 461 ----DTFDGSDLR-VLSGSISERIVDC--IIRLP---------VKWETTTQFKATHI--- 501
Query: 392 KVELTGRTPLRVPGYANPVDFG-----VLASFAYKLDDGSG-EIVVATTRLETLFADVAV 445
+DFG L ++ DG+G ++VA T L+
Sbjct: 502 ------------------LDFGPGGASGLGVLTHRNKDGTGVRVIVAGT-LDI------- 535
Query: 446 AVHPEDER-YKH 456
+P+D+ +K
Sbjct: 536 --NPDDDYGFKQ 545
Score = 56.2 bits (135), Expect = 4e-08
Identities = 112/649 (17%), Positives = 183/649 (28%), Gaps = 241/649 (37%)
Query: 142 DAHG-RKMSKSLGNVIDPLDVVKGISLAGLQGRLLQD---SNLEAAERQRAADGQKRDYP 197
DA+ R ++ S G++ L V Q LQ+ L AAD D P
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQ---LQEQFNKILPEPTEGFAAD----DEP 54
Query: 198 QGIPECGTDALRFALAAYMSQGERTGRRKSIGEKNPKGKFVM-VIPPPNVTGTLHLGHAL 256
E L + ++ +V ++ P V + +
Sbjct: 55 TTPAE-----L---VGKFLG-------------------YVSSLVEPSKVGQFDQVLNLC 87
Query: 257 TNAVEDSITRWNRMKGKTTLWNPGCD-HAGIA-------TQVVVEKKLWREEKKTRHEIG 308
E+ ++G D HA A T +V K+L + R
Sbjct: 88 LTEFENCY-----LEGN--------DIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 309 RE-------KFIEKVWEWKKEKGD-RIYE----QMKLMGSSLDWDRACFTMDPKLSRAVT 356
R V +G+ ++ Q G++ D+
Sbjct: 135 RPFDKKSNSALFRAV-----GEGNAQLVAIFGGQ----GNTDDY--------------FE 171
Query: 357 EAFVILHEAGDIYRS--ERLVHWSCS-LKSAISD-IEVDKVELTG-------RTPLRVPG 405
E L + Y L+ +S L I ++ +KV G P P
Sbjct: 172 E----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 406 --Y--ANPVDF---GV--LASF---AYKLDDGSGEIVV----ATTRLETLFADVAVAVHP 449
Y + P+ GV LA + A L GE+ AT + L VA+A
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 450 EDERYKHLVDKVELT-----G-RTPLRVPGYANPVDFGVLASFAYKLEDGSGE----IVV 499
E + V K +T G R P + P + LE+ G + +
Sbjct: 288 SWESFFVSVRKA-ITVLFFIGVRCYEAYPNTSLP-----PSILEDSLENNEGVPSPMLSI 341
Query: 500 ATTRLETLFADV-AVAVH-PEDER--------YKHLV--G--------KLLVH------- 532
+ E + V H P ++ K+LV G L +
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 533 ------PFCERKI-------PI--------LAD--SFVEKDFGTGAVKISP--------- 560
PF ERK+ P+ L + KD V +
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 561 ---GHD--HNDYEVAQRL---------NLPLITVFNEEGVIIGDYGEFTGMKRFDARTRV 606
G D +++R+ T F ++ D+G G + +
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL--DFG--PG-----GASGL 512
Query: 607 TELISLSISSQGLIKVDKEIERLNKKEEYLKQVIAKLKDQAAAEDYATK 655
L + G+ R+ ++A D +DY K
Sbjct: 513 GVLTHRNKDGTGV--------RV---------IVAGTLDINPDDDYGFK 544
Score = 48.1 bits (114), Expect = 9e-06
Identities = 98/621 (15%), Positives = 174/621 (28%), Gaps = 203/621 (32%)
Query: 20 HHTKTWYQWLENNRDWCISRQLW--WGHRIPAYYVSF---NDPAKKPKNVTEYELWVS-- 72
H + L + I+ QL + +P F ++P T EL
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT------TPAELVGKFL 65
Query: 73 GRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPF-SVFGWPDKQRLSANGIH 131
G E + +F + VL+ + F + + L N IH
Sbjct: 66 GYVSSLVEPSKVGQF------------DQVLNLCLTE----FENCY-------LEGNDIH 102
Query: 132 SEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAER----QR 187
+ +K L L K + + R++ + +
Sbjct: 103 ALA--------------AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 188 AADGQKRDYP----QGIPECGTDALR-------------FALAA-----YMSQGERTGRR 225
+G + QG + + LR +A + +
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 226 KSIG----------EKNPKGKFVMVIP---PPNVTGTLHLGHALTNAVEDSITRWN---R 269
+ G P +++ IP P G + L H + A T
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLI--GVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 270 MKGKTTLWNPGCDHAGIATQVVVEK-KLWREEKKTRHEIGREKFIE---KVWEWKKEKGD 325
+KG T G G+ T V + + W E F K G
Sbjct: 267 LKGAT-----GHS-QGLVTAVAIAETDSW------------ESFFVSVRKAITVLFFIGV 308
Query: 326 RIYEQM-------KLMGSSLDWDRACFTMDPKLS-RAVTEAFVI---------LHEAGDI 368
R YE ++ SL+ + P LS +T+ V L +
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEG--VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 369 YRS--------------ERLVHWSCSLK--SAISDIEVDKVELTGRTPLRVPGYANPVDF 412
S + L + +L+ A S ++ ++ + R + PV
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-LPVA- 424
Query: 413 GVLASF--AYKLDDGSGEIVVATTRLETLF--ADVAVAV-HPEDER---------YKHLV 458
+ F L S I + F D+ + V D + +V
Sbjct: 425 ---SPFHSHL-LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 459 DKV--------ELTGRTPLRVPGYANPVDFG-----VLASFAYKLEDGSG-EIVVATTRL 504
D + T + +DFG L ++ +DG+G ++VA T L
Sbjct: 481 DCIIRLPVKWETTTQFKATHI------LDFGPGGASGLGVLTHRNKDGTGVRVIVAGT-L 533
Query: 505 ETLFADVAVAVHPEDER-YKH 524
+ +P+D+ +K
Sbjct: 534 DI---------NPDDDYGFKQ 545
Score = 42.3 bits (99), Expect = 6e-04
Identities = 47/288 (16%), Positives = 96/288 (33%), Gaps = 87/288 (30%)
Query: 292 VEKKLWRE-EKKTRH-------EIGREKFIEKVWEWKKEKGDRIYEQ-MKLMG-SSLDWD 341
+ +W + + +I + + EKG RI E ++ + +D
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 342 RACFTMDPKLSRAVTEAFVILHEAGDIYRSE----RLVHWSCSLKSAISDIEVDKVELTG 397
+ +++ T + E G + ++ L K+A D++ G
Sbjct: 1701 LKTEKIFKEINEHSTS-YTFRSEKGLLSATQFTQPALTLME---KAAFEDLKSK-----G 1751
Query: 398 RTPLRVP--G-----Y-ANPVDFGVLASFA--YKLDDGSGEIV--------VATTRLETL 439
P G Y A LAS A ++ E+V VA R E
Sbjct: 1752 LIPADATFAGHSLGEYAA-------LASLADVMSIESLV-EVVFYRGMTMQVAVPRDELG 1803
Query: 440 FADVA-VAVHP-------EDERYKHLVDKV-ELTGRTPLRVPGYANPVDFGVLASFAYKL 490
++ +A++P E +++V++V + TG + + N Y +
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW-LVEI---VN-----------YNV 1848
Query: 491 EDG----SGEIV---VATTRLETL------FADVAVAVHPEDERYKHL 525
E+ +G++ T L + ++ ++ E+ HL
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE-GHL 1895
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 48.8 bits (116), Expect = 4e-06
Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 38/187 (20%)
Query: 246 VTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRH 305
V H+GH + + D I R++R+KG+ G D G
Sbjct: 20 VNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG-------------------- 59
Query: 306 EIGREKFIEKVWEWKKEKG-------DRIYEQMKLMGSSLD--WDRACFTMDPKLSRAVT 356
+KV E K+K + + K +D D T + + V
Sbjct: 60 --------QKVAEAAKQKQVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVK 111
Query: 357 EAFVILHEAGDIYRSERLVHWSCSLKSAISDIEV-DKVELTGRTPLRVPGYANPVDFGVL 415
E + L + GDIY +S S +S ++ + D V+ G + V +
Sbjct: 112 ELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSE 171
Query: 416 ASFAYKL 422
++ ++L
Sbjct: 172 ENYMFRL 178
Score = 34.2 bits (78), Expect = 0.14
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 111 LFPFSVFGWPDKQRLSANGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGL 170
+ F WP + + ++ H +K+SKSLGNV DP++ + L
Sbjct: 288 ILKFHAIYWPAFLLSAGLPLPKKIVAHGWWT-KDRKKISKSLGNVFDPVEKAEEFGYDAL 346
Query: 171 QGRLLQDSNL 180
+ LL++S
Sbjct: 347 KYFLLRESGF 356
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 47.6 bits (114), Expect = 1e-05
Identities = 35/138 (25%), Positives = 49/138 (35%), Gaps = 41/138 (29%)
Query: 246 VTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRH 305
V HLGHA T V D + RW+R+ G T + G D G
Sbjct: 14 VNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG-------------------- 53
Query: 306 EIGREKFIEKVWEWKKEKG-------DRIYEQMKLMGSSLD--WDRACF--TMDPKLSRA 354
E V+ + G DR+ + K L +D F T + + +
Sbjct: 54 --------ETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDD--FIRTTEERHKKV 103
Query: 355 VTEAFVILHEAGDIYRSE 372
V ++EAGDIY E
Sbjct: 104 VQLVLKKVYEAGDIYYGE 121
Score = 46.1 bits (110), Expect = 3e-05
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 134 VFLHPIVRDAHGRKMSKSLGNVIDPLDVVK 163
+ + + GRKMSK+LGNV+DP +++
Sbjct: 284 LNVGGFLLGPDGRKMSKTLGNVVDPFALLE 313
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 47.6 bits (114), Expect = 1e-05
Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 41/138 (29%)
Query: 246 VTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRH 305
G H+GHA D+I R+ R+ G + G D G
Sbjct: 23 PNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHG-------------------- 62
Query: 306 EIGREKFIEKVWEWKKEKG-------DRIYEQMKLMGSSLD--WDRACF--TMDPKLSRA 354
+K+ E ++G R + + + L+ +DR F T D A
Sbjct: 63 --------QKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFDR--FIRTSDADHYEA 112
Query: 355 VTEAFVILHEAGDIYRSE 372
+ + +AGDIY
Sbjct: 113 SKAIWKRMADAGDIYLDA 130
Score = 44.2 bits (105), Expect = 1e-04
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 134 VFLHP-IVRDAHGRKMSKSLGNVIDPLDVVK 163
+F H ++ G KMSKS+GNV+DP+++V
Sbjct: 298 IFAHGWLLNR--GEKMSKSIGNVVDPVNLVD 326
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 47.2 bits (113), Expect = 1e-05
Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 41/138 (29%)
Query: 246 VTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRH 305
V HLGHA T D+I R+ R++ + G D G
Sbjct: 16 VNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHG-------------------- 55
Query: 306 EIGREKFIEKVWEWKKEKG-------DRIYEQMKLMGSSLD--WDRACF--TMDPKLSRA 354
K+ + +E G DR E+ K + L + + F T DP +
Sbjct: 56 --------LKIQKKAEELGISPKELVDRNAERFKKLWEFLKIEYTK--FIRTTDPYHVKF 105
Query: 355 VTEAFVILHEAGDIYRSE 372
V + F ++ GDIY E
Sbjct: 106 VQKVFEECYKRGDIYLGE 123
Score = 44.1 bits (105), Expect = 1e-04
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 134 VFLHP-IVRDAHGRKMSKSLGNVIDPLDVVK 163
VF H + G+KMSK+LGNV+DP +VV+
Sbjct: 283 VFAHGWWTVE--GKKMSKTLGNVVDPYEVVQ 311
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 46.9 bits (112), Expect = 2e-05
Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 41/138 (29%)
Query: 246 VTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRH 305
G H+GHA D++ R+ R+ G + G D G
Sbjct: 36 PNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHG-------------------- 75
Query: 306 EIGREKFIEKVWEWKKEKG-------DRIYEQMKLMGSSLD--WDRACF--TMDPKLSRA 354
K+ + +++G DR + M L+ D + T + + +A
Sbjct: 76 --------IKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSNDD--YIRTSEERHYKA 125
Query: 355 VTEAFVILHEAGDIYRSE 372
+ + GDIY+
Sbjct: 126 SQAIWQAMVANGDIYKGG 143
Score = 44.2 bits (105), Expect = 1e-04
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 134 VFLHP-IVRDAHGRKMSKSLGNVIDPLDVVK 163
VF H + G KMSKS+GNVIDP ++V+
Sbjct: 309 VFAHGFLFNR--GEKMSKSVGNVIDPFELVE 337
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 46.1 bits (110), Expect = 3e-05
Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 41/138 (29%)
Query: 246 VTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRH 305
V + H+GH + + D + R++R+KG+ G D G
Sbjct: 37 VNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHG-------------------- 76
Query: 306 EIGREKFIEKVWEWKKEKG-------DRIYEQMKLMGSSLD--WDRACF--TMDPKLSRA 354
+KV E ++G + + K ++ + F T +P +
Sbjct: 77 --------QKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNY--FIRTTNPTHEKL 126
Query: 355 VTEAFVILHEAGDIYRSE 372
V + + L GDIY +
Sbjct: 127 VQDIWKKLAAKGDIYLGK 144
Score = 43.8 bits (104), Expect = 2e-04
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 145 GRKMSKSLGNVIDPLDVVK 163
+K+SKSLGN DP++ K
Sbjct: 337 HKKISKSLGNAFDPVEKAK 355
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.8 bits (87), Expect = 0.004
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 293 EK-KLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKL 351
E + WREE++ R + EW+++ + E + ++ ++
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK-------IN 137
Query: 352 SRAVTEAFV 360
+R +AF
Sbjct: 138 NRIADKAFY 146
Score = 30.9 bits (69), Expect = 0.96
Identities = 7/62 (11%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 623 DKEIERLNKKEEYLKQVIAKLKDQAAAE------DYATKVPENV-RTQNSEK--LSEAEG 673
K ++ L+ + ++Q + +++A + + +V +N + ++K + +
Sbjct: 95 RKRLQELDAASKVMEQ---EWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Query: 674 EL 675
++
Sbjct: 152 DI 153
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 35.8 bits (83), Expect = 0.050
Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 20/130 (15%)
Query: 244 PNVTGTLHLGHALTNAVE-DSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKK 302
P G +H GH + D R+ R+KG+ ++ G D G K E +
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK-----EGR 65
Query: 303 TRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVIL 362
+ EI +++ E K +++ + +D T P + E F+
Sbjct: 66 SPREI-----VDEFHEQIKI----TFQRA-----KISFDFFGRTELPIHYKLSQEFFLKA 111
Query: 363 HEAGDIYRSE 372
+E G + +
Sbjct: 112 YENGHLVKKV 121
Score = 30.4 bits (69), Expect = 2.4
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 28 WLENN-RDWCISRQLWWGHRIP 48
W+E + I+R L WG +P
Sbjct: 219 WIEEGLEERAITRDLNWGIPVP 240
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 35.6 bits (83), Expect = 0.050
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 11/47 (23%)
Query: 128 NGIHSEVFLHP--IVRDAH------GRKMSKSLGNVI---DPLDVVK 163
N ++ EVF P I+ GRKMSKS GN+I ++
Sbjct: 178 NYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEISEKELE 224
Score = 29.4 bits (67), Expect = 3.7
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 247 TGTLHLGH---ALTNAVE 261
TG LH+GH AL N V+
Sbjct: 22 TGKLHIGHLVGALENWVK 39
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 33.4 bits (77), Expect = 0.20
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 134 VFLHPIVRDAHGRKMSKSLGNVIDPLD 160
PI+ G+KMS S GN I D
Sbjct: 201 CLHTPILVGLDGQKMSSSKGNYISVRD 227
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 33.3 bits (77), Expect = 0.23
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 145 GRKMSKSLGNVIDPLD 160
G KMSKS N ID
Sbjct: 190 GAKMSKSYQNTIDIFS 205
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.39
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 24/49 (48%)
Query: 637 KQVIAKLKDQAAAEDYATKVPENVRTQNSEKLSEAEGELSRLPA-ALAA 684
KQ + KL QA+ + YA ++ PA A+ A
Sbjct: 19 KQALKKL--QASLKLYA---DDSA------------------PALAIKA 44
Score = 28.0 bits (61), Expect = 6.5
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 5/23 (21%)
Query: 631 KKEEYLKQVIAKLK----DQAAA 649
+K+ LK++ A LK D A A
Sbjct: 18 EKQA-LKKLQASLKLYADDSAPA 39
>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural
genomics, PSI, protein structure initiative; 2.13A
{Pseudomonas aeruginosa}
Length = 318
Score = 32.1 bits (72), Expect = 0.61
Identities = 31/216 (14%), Positives = 54/216 (25%), Gaps = 33/216 (15%)
Query: 323 KGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLK 382
+ E+ +L+G D RA ++P+ S + A + +
Sbjct: 29 GQGDMAERRRLLGERHDAWRAACILEPRGSDVLVGALLCAPVDPEA-------------- 74
Query: 383 SAISDIEVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLDDGSGEIVVATTRLETLFAD 442
V +G + G + A G I R+ET +
Sbjct: 75 ----CAGVIFFNNSGYLGMCGH--------GTIGLVASLAH--LGRIGPGVHRIETPVGE 120
Query: 443 VAVAVHPEDERYKHLVDKVELTGRTPLRVPGYANPVDFGVLASFAYKLEDGSG-----EI 497
V +H + V + + VPG + L G G +
Sbjct: 121 VEATLHEDGSVSVRNVPAYRYRRQVSVEVPGIGRVSGDIAWGGNWFFLVAGHGQRLAGDN 180
Query: 498 VVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHP 533
+ A T E + L
Sbjct: 181 LDALTAYTVAVQQALDDQDIRGEDGGAIDHIELFAD 216
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 31.4 bits (72), Expect = 0.87
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 441 ADVAVAVHPEDERYKHLVDKVELTGRTPLRVPG 473
A++A+A E+ VE G + +PG
Sbjct: 72 ANIAIAYLDEEGDANETKQYVEKEGVKCVLLPG 104
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 31.8 bits (73), Expect = 0.92
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 145 GRKMSKSLGNVIDPLDVVK 163
KMSKS GN I D+
Sbjct: 297 YNKMSKSRGNFITVKDLED 315
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 31.6 bits (72), Expect = 1.0
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 212 LAAYMSQGERTGRRKSIGEKNPKGKFVMV-IPPPNVTGTLHLGHALTNAVEDSITR 266
+ +++G+R G + KGK V+V N T LH+GHA + D + R
Sbjct: 100 INDILAKGDRFGSSEI-----GKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMAR 150
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 31.0 bits (71), Expect = 1.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 145 GRKMSKSLGNVIDPLDVVK 163
KMSKSLGN DV+K
Sbjct: 264 REKMSKSLGNFFTVRDVLK 282
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 30.6 bits (70), Expect = 1.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 145 GRKMSKSLGNVIDPLDVVK 163
KMSKSLGN+I + +K
Sbjct: 267 KEKMSKSLGNIISIREALK 285
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 30.6 bits (70), Expect = 1.8
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 13/49 (26%)
Query: 128 NGIHSEVFLHP--IVRDAHGR--------KMSKSLGNVI---DPLDVVK 163
N + E F P ++ R KMSKSLGN I +P + +
Sbjct: 166 NHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLEPEESIW 214
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 30.7 bits (70), Expect = 1.8
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 145 GRKMSKSLGNVI 156
G KMSKS GN++
Sbjct: 289 GHKMSKSRGNLV 300
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 30.6 bits (70), Expect = 1.9
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 147 KMSKSLGNVI---DPLDVVK 163
KMSKSLGN I D D V
Sbjct: 215 KMSKSLGNAIALGDSADEVA 234
Score = 29.5 bits (67), Expect = 4.0
Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 247 TGTLHLGH---ALTNAVE 261
TG LHLGH +L N V
Sbjct: 32 TGALHLGHLAGSLQNRVR 49
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 63 NVTEYELWVSGRSKEEAEQKA 83
NV E + V G SK +A ++A
Sbjct: 113 NVMEAPIQVLGLSKHDARERA 133
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 29.5 bits (67), Expect = 2.0
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 626 IERLNKKEEYLKQVIAKLKDQAAAEDYATKVPENVRTQNSEKLSEAEGELSRLPAALAAL 685
IE + + E L++ + L+ V + E+ + E+ RL + +A L
Sbjct: 6 IEAVEEMERLLREASSILR--VEPAKLPKTV-----ERFFEEWKDQRKEIERLKSVIADL 58
Query: 686 K 686
Sbjct: 59 W 59
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 30.3 bits (69), Expect = 2.1
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 134 VFLHPIVRDAHG-RKMSKSLGNVIDPLD 160
+P++ G KMS S GN I D
Sbjct: 190 CIHNPVLTGLDGEGKMSSSKGNFIAVDD 217
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 29.9 bits (68), Expect = 2.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 63 NVTEYELWVSGRSKEEAEQKA 83
N+T + V +E+AE KA
Sbjct: 120 NITLAPMKVRKWPREKAEAKA 140
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 29.9 bits (68), Expect = 2.9
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 231 KNPKGKFVMVIPP-PNVTGTLHLGHA 255
KG+ V+ P P+ G LH+GHA
Sbjct: 91 AGVKGEVVLRFAPNPS--GPLHIGHA 114
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene
regulation, NUCL protein, gene regulation,nuclear
protein; NMR {Homo sapiens}
Length = 85
Score = 27.7 bits (62), Expect = 3.6
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 72 SGRSKEEAEQKA----ISKFNVTQAD 93
G S ++AE A + K+N Q
Sbjct: 55 KGPSIQQAEMGAAMDALEKYNFPQMH 80
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 29.2 bits (66), Expect = 4.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 244 PNVTGTLHLGHALTNAVEDSITR 266
N LH+GH A+ D+I R
Sbjct: 112 VNPNKELHVGHLRNIALGDAIAR 134
>3iuk_A Uncharacterized protein; PF05960.1, DUF885, M32
carboxypeptidase-like fold, PSI, MCSG structural
genomics, protein structure initiative; 1.85A
{Arthrobacter aurescens}
Length = 562
Score = 29.6 bits (66), Expect = 4.8
Identities = 7/59 (11%), Positives = 20/59 (33%)
Query: 626 IERLNKKEEYLKQVIAKLKDQAAAEDYATKVPENVRTQNSEKLSEAEGELSRLPAALAA 684
R ++ IA L+ A + + + + + +G +++ A +
Sbjct: 136 AGRAANVPGAIEGYIASLRAAKDDRKVAAARQIRIVIEQTGRYAAEDGFFAKMAADASL 194
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase,
nucleotide excision repair,; 2.20A {Thermoplasma
acidophilum} PDB: 2vsf_A*
Length = 620
Score = 29.3 bits (66), Expect = 5.0
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Query: 605 RVTELISLSISSQGLIKVDKEIERLNKKEE----YLKQVIAKLKDQAAAEDYATKVPENV 660
+ S IS + L + D+E + E ++ +I ++ + +V
Sbjct: 219 IGRSIGSFRISVESLNRADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDV 278
Query: 661 RTQNSEKLSEAEGELSRLPAALAAL 685
R + E + R + +L
Sbjct: 279 RIRFQEFMEYMRIMNKRSEREIRSL 303
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 29.1 bits (66), Expect = 5.7
Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 19/129 (14%)
Query: 244 PNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKT 303
P G++HLGH L + D R+ RM+G + D G + ++ T
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ-----LGIT 81
Query: 304 RHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILH 363
++ I ++ + + + ++ +D T + + + L
Sbjct: 82 PEQM-----IGEMSQEHQT----DFAGF-----NISYDNYHSTHSEENRQLSELIYSRLK 127
Query: 364 EAGDIYRSE 372
E G I
Sbjct: 128 ENGFIKNRT 136
>3qva_A Transthyretin-like protein; transthyretin-related protein,
5-hydroxyisourate hydrolase,; HET: PO4; 1.75A
{Klebsiella pneumoniae subsp}
Length = 116
Score = 27.8 bits (62), Expect = 5.8
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 159 LDVVKGISLAGLQGRLLQDSNLEAAERQRAADGQKRDYPQGIPECGTDALRFALAAYMSQ 218
LD+ G G+ L ++ A A G+ + G L A+ ++
Sbjct: 17 LDISTGTPAEGVTVSLSREGETLA-NLVTNAQGRIATFSAAPLPAGRYCLTAETGAWFAR 75
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 27.9 bits (61), Expect = 7.7
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 621 KVDKEIERLNKK--EEYLKQVIAKLKDQAAAEDYATKVPENVRTQNSEKLSEAEGELSRL 678
K++KE+E L +E V K++ A E ++ +E+L E + L L
Sbjct: 83 KLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRL--------TEQLREKDTLLDTL 134
Query: 679 PAALAALK 686
L LK
Sbjct: 135 TLQLKNLK 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.401
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,115,807
Number of extensions: 721662
Number of successful extensions: 1921
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1867
Number of HSP's successfully gapped: 130
Length of query: 689
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 589
Effective length of database: 3,909,693
Effective search space: 2302809177
Effective search space used: 2302809177
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)