RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy944
(689 letters)
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 153 bits (388), Expect = 2e-41
Identities = 84/159 (52%), Positives = 116/159 (72%), Gaps = 1/159 (0%)
Query: 230 EKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQ 289
K+ K FV+ +PPPNVTG+LH+GHAL N+++D++ R+ RM+G +W PG DHAGIATQ
Sbjct: 29 PKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQ 88
Query: 290 VVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDP 349
VVVE+ L +E KTRH++GREKF+E+VW+WK+E G I +Q+K +G+S DW R FTMD
Sbjct: 89 VVVERLL-LKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDE 147
Query: 350 KLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDI 388
K SRAV AF + G YR+ RLV+W ++ +SD+
Sbjct: 148 KRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDL 186
Score = 94.2 bits (233), Expect = 4e-21
Identities = 73/251 (29%), Positives = 100/251 (39%), Gaps = 84/251 (33%)
Query: 1 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKK 60
+AE+ ++ ++ G++ +P+ K WLEN +DW ISRQLWWGH+IPA+Y
Sbjct: 213 LAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNV 272
Query: 61 PKNVTEYELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWP 120
P+ E S + L++DEDV DTWFSS L+P S GWP
Sbjct: 273 PRPERYLEDPTSCEACGSPR---------------LKRDEDVFDTWFSSALWPLSTLGWP 317
Query: 121 ----DKQRLSANGIHSE---------------------------VFLHPIVRDAHGRKMS 149
D + + V LH +V D G+KMS
Sbjct: 318 EETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMS 377
Query: 150 KSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAERQRAADGQKRDYPQGIPECGTDALR 209
KS GNVIDPL++V+ G DALR
Sbjct: 378 KSKGNVIDPLEMVE--------------------------------------RYGADALR 399
Query: 210 FALAAYMSQGE 220
FAL + G+
Sbjct: 400 FALIYLATGGQ 410
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 139 bits (350), Expect = 9e-36
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 17/168 (10%)
Query: 220 ERTGRRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNP 279
E G K+ +GK +++ P +G LH+GH + D + R+ RM+G L
Sbjct: 18 EEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPM 77
Query: 280 GCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLD 339
G D G+ + KF +W + E ++LMG D
Sbjct: 78 GWDAFGLPAENAA-----------------LKFGVHPKDWTYANIRQAKESLRLMGILYD 120
Query: 340 WDRACFTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISD 387
WDR T +P+ R F+ + E G YR++ LV+W ++ +++
Sbjct: 121 WDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLAN 168
Score = 61.9 bits (149), Expect = 1e-10
Identities = 21/170 (12%), Positives = 38/170 (22%), Gaps = 21/170 (12%)
Query: 8 AVKTGELKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEY 67
A + + + + ++ + + D +P
Sbjct: 299 AKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVE-------HAV 351
Query: 68 ELWVSGRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSA 127
+ R + Q + T F SV P+ R+
Sbjct: 352 LHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRL 411
Query: 128 NGIHSEVFL--------------HPIVRDAHGRKMSKSLGNVIDPLDVVK 163
S + L + MSKS GN + VK
Sbjct: 412 EIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVK 461
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 131 bits (329), Expect = 3e-33
Identities = 35/155 (22%), Positives = 67/155 (43%)
Query: 225 RKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHA 284
+KS+ + ++ + PP G H+GHA + +D R+ M+G G D
Sbjct: 28 QKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTH 87
Query: 285 GIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRAC 344
G+ ++ VEKKL + K+ G E+F + E + + +D + A
Sbjct: 88 GLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAY 147
Query: 345 FTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSC 379
T++P ++ + L + G +YR ++V +
Sbjct: 148 ATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCP 182
Score = 93.5 bits (231), Expect = 8e-21
Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 35/181 (19%)
Query: 18 PDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKE 77
P + +WL+N DW +SR +WG +P + + + E + + E
Sbjct: 238 PHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPE 297
Query: 78 EAEQKAISKFNVTQADI---SLRQDEDVLDTWFSSGLFPFSVFGWP-------------- 120
+ V A ++R+ V+D W+ SG PF+ +P
Sbjct: 298 PFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPAD 357
Query: 121 ------DKQRLSANGIH------------SEVFLHPIVRDAHGRKMSKSLGNVIDPLDVV 162
D+ R N +H V H ++ D G+KMSKS GNV+DP D++
Sbjct: 358 FIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDII 417
Query: 163 K 163
+
Sbjct: 418 R 418
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 120 bits (300), Expect = 2e-29
Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 5/159 (3%)
Query: 225 RKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHA 284
K++ + F++ PP G LH+GHAL ++D I R+ M+G + PG D
Sbjct: 38 HKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTH 97
Query: 285 GIATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRAC 344
G+ + + ++ R ++ +F EK E+ E+ + + + +G D++
Sbjct: 98 GLPIE-----QALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPY 152
Query: 345 FTMDPKLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKS 383
T+ P+ A F + + G IY+ ++ V+WS S +S
Sbjct: 153 ITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSES 191
Score = 93.5 bits (231), Expect = 8e-21
Identities = 38/179 (21%), Positives = 60/179 (33%), Gaps = 32/179 (17%)
Query: 17 IPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVS---- 72
+ Y + + +W ISRQ WG +P +Y + + V +
Sbjct: 239 KVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGS 298
Query: 73 --GRSKEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGI 130
+E + + + + ++ D++D WF SG V + A+
Sbjct: 299 NIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMY 358
Query: 131 H--------------------------SEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVK 163
+ H V D G+KMSKSLGNVI P VVK
Sbjct: 359 LEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVK 417
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus
thermophilus [TaxId: 274]}
Length = 143
Score = 92.6 bits (229), Expect = 8e-23
Identities = 71/157 (45%), Positives = 93/157 (59%), Gaps = 16/157 (10%)
Query: 481 GVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFCERKIP 540
G L + Y++E G G I +AT R ET+FAD A+AVHPEDERY+HL+GK P E IP
Sbjct: 1 GKLYTLRYEVE-GGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIP 59
Query: 541 ILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEGVII--GDYGEFTGMK 598
ILAD VEKDFGTGA+K++P HD DYE+ +R L ++V N EG + G+
Sbjct: 60 ILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLD 119
Query: 599 RFDARTRVTELISLSISSQGLIKVDKEIERLNKKEEY 635
RF+AR + EL +E L K+E+Y
Sbjct: 120 RFEARRKAVELF-------------REAGHLVKEEDY 143
Score = 47.2 bits (111), Expect = 7e-07
Identities = 25/44 (56%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 413 GVLASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKH 456
G L + Y+++ G G I +AT R ET+FAD A+AVHPEDERY+H
Sbjct: 1 GKLYTLRYEVE-GGGFIEIATVRPETVFADQAIAVHPEDERYRH 43
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 87.3 bits (215), Expect = 2e-20
Identities = 41/209 (19%), Positives = 69/209 (33%), Gaps = 47/209 (22%)
Query: 416 ASFAYKLDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTGRTPLRVPGYA 475
A + ++ I V TTR +TLF + + PE L
Sbjct: 5 AEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAA--------------PE 50
Query: 476 NPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVGKLLVHPFC 535
+ A + + + E+ +G ++P
Sbjct: 51 KREEVLAYVEAAKRKTEIERQ-------------------AEGREKTGVFLGAYALNPAT 91
Query: 536 ERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFN------------- 582
+IPI +V +GTGA+ P HD DYE A++ LP+ V
Sbjct: 92 GERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERA 151
Query: 583 -EEGVIIGDYGEFTGMKRFDARTRVTELI 610
EE I+ + G F G + + + +V +
Sbjct: 152 YEEPGIMVNSGPFDGTESEEGKRKVIAWL 180
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 194
Score = 82.4 bits (202), Expect = 1e-18
Identities = 52/230 (22%), Positives = 87/230 (37%), Gaps = 47/230 (20%)
Query: 410 VDFGVLASFAYK----LDDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLVDKVELTG 465
+ +F K + D + ++ TT T+ ++VA+ VHPE + ++
Sbjct: 4 RSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQY--------- 54
Query: 466 RTPLRVPGYANPVDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHL 525
E ++ E L D A ++ K L
Sbjct: 55 ---------------------NVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKEL 93
Query: 526 VGKLLVHPFCERKIPILADSFVEKDFGTGAVKISPGHDHNDYEVAQRLNLPLITVFNEEG 585
+ HPF +R+ ++ V D GTG V +PGH +DY V Q+ LP+I+ +++G
Sbjct: 94 EWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKG 153
Query: 586 VIIGDYGEFTGMKRFDARTRVTELISLSISSQGLIKVDKEIERLNKKEEY 635
V + G+F GM A VT+L+ E L K +
Sbjct: 154 VFTEEGGQFEGMFYDKANKAVTDLL-------------TEKGALLKLDFI 190
Score = 33.0 bits (74), Expect = 0.071
Identities = 7/41 (17%), Positives = 20/41 (48%)
Query: 350 KLSRAVTEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEV 390
K S ++ AF + + G + + + W+ + + S++ +
Sbjct: 3 KRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAI 43
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 85.3 bits (210), Expect = 2e-18
Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 19/155 (12%)
Query: 236 KFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKK 295
K ++ P G++HLGH L + D R+ RM+G + D G + ++
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ- 61
Query: 296 LWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAV 355
T ++ E E ++ G ++ +D T + +
Sbjct: 62 ----LGITPEQMIGEMSQEHQTDFA--------------GFNISYDNYHSTHSEENRQLS 103
Query: 356 TEAFVILHEAGDIYRSERLVHWSCSLKSAISDIEV 390
+ L E G I + + D V
Sbjct: 104 ELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFV 138
Score = 46.1 bits (108), Expect = 1e-05
Identities = 23/148 (15%), Positives = 42/148 (28%), Gaps = 9/148 (6%)
Query: 16 IIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRS 75
+ K + + W ISR + Y
Sbjct: 172 LQEQVANKMQEWFESGLQQWDISRDAPY-FGFEIPNAPGKYFYVWLDAPIGYMGSFKNLC 230
Query: 76 KEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVF 135
+ + + ++ + L +F S +P + G ++ S +F
Sbjct: 231 DKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRK-------PSNLF 283
Query: 136 LHPIVRDAHGRKMSKSLGNVIDPLDVVK 163
+H V +G KMSKS G I +
Sbjct: 284 VHGYVTV-NGAKMSKSRGTFIKASTWLN 310
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 79.3 bits (194), Expect = 2e-16
Identities = 24/98 (24%), Positives = 35/98 (35%)
Query: 234 KGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVE 293
+ F + P V HLGHA T V D + RW+R+ G T + G D G +
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQ 61
Query: 294 KKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQM 331
+ GR K + + R E+
Sbjct: 62 AAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEER 99
Score = 57.0 bits (136), Expect = 3e-09
Identities = 29/203 (14%), Positives = 58/203 (28%), Gaps = 57/203 (28%)
Query: 18 PDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRSKE 77
+ + + + ++ WG +P D + L
Sbjct: 187 RNEVLAMLAEPIGDLSISRPKSRVPWGIPLP------WDENHVTFVWFDALLNY------ 234
Query: 78 EAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSANGIHSEVFLH 137
+S + + + L P +VF + + ++ + +
Sbjct: 235 ------VSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKA-AGIPMYRHLNVG 287
Query: 138 PIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAERQRAADGQKRDYP 197
+ GRKMSK+LGNV+DP +++
Sbjct: 288 GFLLGPDGRKMSKTLGNVVDPFALLE---------------------------------- 313
Query: 198 QGIPECGTDALRFALAAYMSQGE 220
+ G DALR+ L + G+
Sbjct: 314 ----KYGRDALRYYLLREIPYGQ 332
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 73.9 bits (180), Expect = 1e-14
Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 236 KFVMVIPPPNVTGTLHLGHALTNAV-EDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEK 294
++++ P G +H GH + D R+ R+KG+ ++ G D G K
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Query: 295 KLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRA 354
E ++ EI E + + + + +D T P +
Sbjct: 63 -----EGRSPREIVDEFHEQIKITF--------------QRAKISFDFFGRTELPIHYKL 103
Query: 355 VTEAFVILHEAGDIYRSERLVHWSCS 380
E F+ +E G + + +
Sbjct: 104 SQEFFLKAYENGHLVKKVTKQAYCEH 129
Score = 50.8 bits (120), Expect = 3e-07
Identities = 24/213 (11%), Positives = 50/213 (23%), Gaps = 45/213 (21%)
Query: 14 LKIIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDP--AKKPKNVTEYELWV 71
P+ E + I+R L WG +P + Y
Sbjct: 171 QPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISIT 230
Query: 72 SGRSKEEAEQKAISKFNV----TQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSA 127
K + K+ + I +++ F + + D++ +
Sbjct: 231 IEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAE 290
Query: 128 NGIHSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGISLAGLQGRLLQDSNLEAAERQR 187
+ ++ + + G+K S S I + +
Sbjct: 291 WNLPYDIPANEYLTL-EGKKFSTSRNWAIWVHEFLD------------------------ 325
Query: 188 AADGQKRDYPQGIPECGTDALRFALAAYMSQGE 220
D LR+ L M +
Sbjct: 326 --------------VFPADYLRYYLTTIMPETR 344
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus
thermophilus [TaxId: 274]}
Length = 179
Score = 68.4 bits (166), Expect = 6e-14
Identities = 39/166 (23%), Positives = 60/166 (36%), Gaps = 39/166 (23%)
Query: 478 VDFGVLASFAYKLEDGSGEIVVATTRLETLFADVAVAVHPEDERYKHLV----------- 526
V F + LE S +++ TT TL +VA AVHPE V
Sbjct: 5 VRFPLKEPKKLGLEKAS--LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGL 62
Query: 527 ----------------GKLL--------VHPFCERKIPILADSFVEKDFGTGAVKISPGH 562
GK L E+ ++ +V ++ GTG V +P
Sbjct: 63 GRKLLGEGTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAF 122
Query: 563 DHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTE 608
D E A+ LPL+ +EEG ++ + F G+ +A +
Sbjct: 123 GAEDLETARVYGLPLLKTVDEEGKLLVE--PFKGLYFREANRAILR 166
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS)
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 66
Score = 59.3 bits (144), Expect = 5e-12
Identities = 13/64 (20%), Positives = 29/64 (45%)
Query: 622 VDKEIERLNKKEEYLKQVIAKLKDQAAAEDYATKVPENVRTQNSEKLSEAEGELSRLPAA 681
V++ R K+ + L + + + + A+ + K P+ V +L E + R+ A
Sbjct: 2 VEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREA 61
Query: 682 LAAL 685
L+ +
Sbjct: 62 LSQI 65
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 52.4 bits (124), Expect = 7e-08
Identities = 14/121 (11%), Positives = 34/121 (28%)
Query: 226 KSIGEKNPKGKFVMVIPPPNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAG 285
I + + + +V +G +H+G+ + R KG D
Sbjct: 8 DKIIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYD 67
Query: 286 IATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACF 345
+V ++ + + + E+++ +G +D A
Sbjct: 68 RFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASE 127
Query: 346 T 346
Sbjct: 128 L 128
Score = 34.3 bits (77), Expect = 0.046
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 133 EVFLH-PIVRDAHGRKMSKSLGNVIDPLDVVKGIS 166
++ + KMS S GNVI D+ + +
Sbjct: 262 LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLE 296
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 46.9 bits (110), Expect = 5e-06
Identities = 26/156 (16%), Positives = 46/156 (29%), Gaps = 17/156 (10%)
Query: 16 IIPDHHTKTWYQWLENNRDWCISRQLWWGHRIPAYYVSFNDPAKKPKNVTEYELWVSGRS 75
++ D T Y L + G R+ D +N ++ LW +
Sbjct: 142 VMFDVPTDPTYGVLSRQDLDQL----QAGARV--------DVVDDKRNPMDFVLWKMSKE 189
Query: 76 KEEAEQKAISKFNVTQADISLRQDEDVLDTWFSSGLFPFSVFGWPDKQRLSAN-----GI 130
E + + L F + + ++ + G
Sbjct: 190 GEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQ 249
Query: 131 HSEVFLHPIVRDAHGRKMSKSLGNVIDPLDVVKGIS 166
+ ++H + KMSKSLGN DV+K
Sbjct: 250 YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYD 285
Score = 34.9 bits (79), Expect = 0.024
Identities = 18/148 (12%), Positives = 38/148 (25%), Gaps = 5/148 (3%)
Query: 244 PNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKT 303
V H+GH T D + R+ R G + K E ++
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKII-----KRANENGES 84
Query: 304 RHEIGREKFIEKVWEWKKEKGDRIYEQMKLMGSSLDWDRACFTMDPKLSRAVTEAFVILH 363
+ E ++ R + + + + K V + ++
Sbjct: 85 FVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMF 144
Query: 364 EAGDIYRSERLVHWSCSLKSAISDIEVD 391
+ L A + ++V
Sbjct: 145 DVPTDPTYGVLSRQDLDQLQAGARVDVV 172
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 34.9 bits (79), Expect = 0.032
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 244 PNVTGTLHLGHALTNAVEDSITRWNRMKG 272
PN+ H GH + + + G
Sbjct: 17 PNIAKPFHAGHLRSTIIGGFLANLYEKLG 45
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 33.7 bits (76), Expect = 0.068
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 244 PNVTGTLHLGHALTNAVEDSITRWNRMKG 272
N LH+GH A+ D+I R G
Sbjct: 16 VNPNKELHVGHLRNIALGDAIARILAYAG 44
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 29.8 bits (66), Expect = 1.2
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 239 MVIP--PPNVTGTLHLGHALT 257
MV+ P+ TG H+G A
Sbjct: 1 MVVTRIAPSPTGDPHVGTAYI 21
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 29.4 bits (65), Expect = 1.4
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 225 RKSIGEKNPKGKFVMVIP--PPNVTGTLHLGHALT 257
R+ I E GK V PP G LH+GHA +
Sbjct: 5 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKS 39
>d1j6ra_ d.173.1.2 (A:) Hypothetical protein TM0269 {Thermotoga
maritima [TaxId: 2336]}
Length = 197
Score = 28.2 bits (63), Expect = 2.7
Identities = 13/48 (27%), Positives = 18/48 (37%)
Query: 620 IKVDKEIERLNKKEEYLKQVIAKLKDQAAAEDYATKVPENVRTQNSEK 667
KVD++IE +K E L E KV +R + S
Sbjct: 97 KKVDEKIEEYFRKGEDLLAFFIDGIASEMVEYALRKVDAELRMKRSNL 144
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 27.9 bits (61), Expect = 3.8
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 243 PPNVTGTLHLGHALT 257
P+ +G LH G +
Sbjct: 8 APSPSGELHFGSLIA 22
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.401
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,663,245
Number of extensions: 131066
Number of successful extensions: 469
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 45
Length of query: 689
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 597
Effective length of database: 1,144,436
Effective search space: 683228292
Effective search space used: 683228292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)