BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9440
(521 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 283 bits (725), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 205/557 (36%), Positives = 280/557 (50%), Gaps = 69/557 (12%)
Query: 1 IALVDLLSSVGISPEGIVGHSDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPDFNGEKRP 60
IAL+DLL+S+G+ P+GI+GHS +G G G L +
Sbjct: 561 IALIDLLTSLGLQPDGIIGHS---------------LGEVACGYADGCLTQEE------- 598
Query: 61 VWYVFSGMGSQWAG-MVKGLLHIPVFDQSIRKSAEALRGENF-DLIPVI-TSEDADTF-- 115
+ + S W G +K +P ++ S E + ++P S+D T
Sbjct: 599 -----AVLSSYWRGYCIKEANVLPGAMAAVGLSWEECKQRCPPGIVPACHNSKDTVTISG 653
Query: 116 -EHILNSFVS------IAAVQVSENRHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWI 168
+ ++ F+ + +V AFHS ++ P L L ++I PKPRS RW+
Sbjct: 654 PQAAMSEFLQQLKREDVFVKEVRTGGIAFHSYFMESIAPTLLRQLRKVILDPKPRSKRWL 713
Query: 169 SSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKR 228
S+SIPE W LA+ S Y VNNL+SPVLF EALQHVP +AVV+EIAPHALLQA++KR
Sbjct: 714 STSIPEAQWQGSLARTFSAEYSVNNLVSPVLFQEALQHVPAHAVVVEIAPHALLQAVLKR 773
Query: 229 AKPGAVS-IGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSL 287
+ + + I L K+ D LS +G+L+ AG+ N L PPV+FP RGTP+I
Sbjct: 774 SLESSCTIIPLMKKDHRDNLEFFLSNVGRLHLAGVSVNPNGLFPPVEFPAPRGTPLISPH 833
Query: 288 VEWDHSTEWSVASFAG--KGGSRSGECVIDVDLSKEE-DAYLSGHAIDGRILFPATG--- 341
++WDHS W V S A G S S V D+S E D YL H IDGR+LFP TG
Sbjct: 834 IKWDHSQAWDVPSAADFPSGSSCSSVAVYKFDVSPESPDHYLVDHCIDGRVLFPGTGYLW 893
Query: 342 -TEEAVEHFL-QKIESIPRDDEFIALLHEIHNTNIAGHPYRGE-------------FELC 386
T + + L Q +E P E + L H I P G FE+
Sbjct: 894 LTWKTLARALSQNLEETPVVFEDVTL----HQATIL--PKTGTVSLEVRLLEASHAFEVS 947
Query: 387 ES-GSVAVSGRIRTPEDVSKEQLDL-PELTPAISSEMLELSSADVYKDLRLRGYDYSGAF 444
+S GS+ SG++ E + D + PA S+ LS DVYKDLRLRGYDY F
Sbjct: 948 DSNGSLIASGKVYQWESPDPKLFDTRAAVDPADSTAEFRLSQGDVYKDLRLRGYDYGPFF 1007
Query: 445 RGVSQSDNKGFTGKLDWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKAL 504
+ V +SD +G G+L W +W+S++D ML SIL LYLPTR + IDP H+
Sbjct: 1008 QLVLESDLEGNRGRLQWNDSWVSFLDAMLHMSILAPGQLGLYLPTRFTSIRIDPVTHRQK 1067
Query: 505 VETLSGDKKTVPVAMYR 521
+ TL + V + R
Sbjct: 1068 LYTLQDTTQAADVVVDR 1084
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 56 GEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTF 115
G KRPVW++ SGMG+QW GM L+ + F SI +S +AL+ + ++ S D
Sbjct: 487 GSKRPVWFICSGMGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLLSTDEAVL 546
Query: 116 EHILNSFVSIAAVQVS 131
+ I++SFVS+ ++Q++
Sbjct: 547 DDIVSSFVSLTSIQIA 562
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 334 RILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRG 381
R+L + T EAV+ L++ RD F+ +L+EI + P+RG
Sbjct: 422 RLLQASGRTLEAVQTLLEQGLRHSRDLAFVGMLNEIAAVSPVAMPFRG 469
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 218 bits (555), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 154/432 (35%), Positives = 219/432 (50%), Gaps = 59/432 (13%)
Query: 1 IALVDLLSSVGISPEGIVGHSDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPDFNGEKRP 60
I L+DLLS +G+ P+GIVGHS +G G G L +
Sbjct: 563 IGLIDLLSCMGLRPDGIVGHS---------------LGEVACGYADGCLSQEE------- 600
Query: 61 VWYVFSGMGSQWAGMVKGLLHIP---------VFDQSIRKSAEAL--RGENFDLIPVITS 109
+ + + W G H+P +++ ++ + N I+
Sbjct: 601 -----AVLAAYWRGQCIKEAHLPPGAMAAVGLSWEECKQRCPPGVVPACHNSKDTVTISG 655
Query: 110 EDADTFEHILN-SFVSIAAVQVSENRHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWI 168
A FE + + A +V AFHS ++ P L L ++I PKPRSARW+
Sbjct: 656 PQAPVFEFVEQLRKEGVFAKEVRTGGMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWL 715
Query: 169 SSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKR 228
S+SIPE W + LA+ SS Y+VNNL+SPVLF EAL HVPE+AVV+EIAPHALLQA++KR
Sbjct: 716 STSIPEAQWHSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKR 775
Query: 229 A-KPGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSL 287
KP I L K+ D L+G+G+L+ +G+ N L PPV+FP RGTP+I L
Sbjct: 776 GLKPSCTIIPLMKKDHRDNLEFFLAGIGRLHLSGIDANPNALFPPVEFPAPRGTPLISPL 835
Query: 288 VEWDHSTEWSVAS---FAGKGGSRSGECVIDVDLSKEE-DAYLSGHAIDGRILFPATGTE 343
++WDHS W V + F GS S + ++D S E D YL H +DGR+LFPATG
Sbjct: 836 IKWDHSLAWDVPAAEDFPNGSGSPSA-AIYNIDTSSESPDHYLVDHTLDGRVLFPATGYL 894
Query: 344 EAVEHFLQK-----IESIPRDDEFIALLHE---IHNTNIAGHPYR-----GEFELCESGS 390
V L + +E +P E + +LH+ + T R FE+ E+G+
Sbjct: 895 SIVWKTLARALGLGVEQLPVVFEDV-VLHQATILPKTGTVSLEVRLLEASRAFEVSENGN 953
Query: 391 VAVSGRIRTPED 402
+ VSG++ +D
Sbjct: 954 LVVSGKVYQWDD 965
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%)
Query: 58 KRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEH 117
+RP+W++ SGMG+QW GM L+ + F SI +S EA++ + ++ S D TF+
Sbjct: 491 ERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDD 550
Query: 118 ILNSFVSIAAVQV 130
I++SFVS+ A+Q+
Sbjct: 551 IVHSFVSLTAIQI 563
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|B Chain B, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|C Chain C, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|D Chain D, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
Length = 433
Score = 169 bits (427), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 153/297 (51%), Gaps = 40/297 (13%)
Query: 1 IALVDLLSSVGISPEGIVGHSDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPDFNGEKRP 60
I L+DLLS +G+ P+GIVGHS +G G G L +
Sbjct: 163 IGLIDLLSCMGLRPDGIVGHS---------------LGEVACGYADGCLSQEE------- 200
Query: 61 VWYVFSGMGSQWAGMVKGLLHIP---------VFDQSIRKSAEAL--RGENFDLIPVITS 109
+ + + W G H+P +++ ++ + N I+
Sbjct: 201 -----AVLAAYWRGQCIKEAHLPPGAMAAVGLSWEECKQRCPPGVVPAXHNSKDTVTISG 255
Query: 110 EDADTFEHILN-SFVSIAAVQVSENRHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWI 168
A FE + + A +V AFHS ++ P L L ++I PKPRSARW+
Sbjct: 256 PQAPVFEFVEQLRKEGVFAKEVRTGGMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWL 315
Query: 169 SSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKR 228
S+SIPE W + LA+ SS Y+VNNL+SPVLF EAL HVPE+AVV+EIAPHALLQA++KR
Sbjct: 316 STSIPEAQWHSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKR 375
Query: 229 A-KPGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMI 284
KP I L K+ D L+G+G+L+ +G+ N L PPV+FP RGTP+I
Sbjct: 376 GLKPSCTIIPLMKKDHRDNLEFFLAGIGRLHLSGIDANPNALFPPVEFPAPRGTPLI 432
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%)
Query: 58 KRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEH 117
+RP+W++ SGMG+QW GM L+ + F SI +S EA++ + ++ S D TF+
Sbjct: 91 ERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDD 150
Query: 118 ILNSFVSIAAVQV 130
I++SFVS+ A+Q+
Sbjct: 151 IVHSFVSLTAIQI 163
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 159 bits (401), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 147/289 (50%), Gaps = 40/289 (13%)
Query: 1 IALVDLLSSVGISPEGIVGHSDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPDFNGEKRP 60
I L+DLLS +G+ P+GIVGHS +G G G L +
Sbjct: 163 IGLIDLLSCMGLRPDGIVGHS---------------LGEVACGYADGCLSQEE------- 200
Query: 61 VWYVFSGMGSQWAGMVKGLLHIP---------VFDQSIRKSAEAL--RGENFDLIPVITS 109
+ + + W G H+P +++ ++ + N I+
Sbjct: 201 -----AVLAAYWRGQCIKEAHLPPGAMAAVGLSWEECKQRCPPGVVPACHNSKDTVTISG 255
Query: 110 EDADTFEHILN-SFVSIAAVQVSENRHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWI 168
A FE + + A +V AFHS ++ P L L ++I PKPRSARW+
Sbjct: 256 PQAPVFEFVEQLRKEGVFAKEVRTGGMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWL 315
Query: 169 SSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKR 228
S+SIPE W + LA+ SS Y+VNNL+SPVLF EAL HVPE+AVV+EIAPHALLQA++KR
Sbjct: 316 STSIPEAQWHSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKR 375
Query: 229 A-KPGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFP 276
KP I L K+ D L+G+G+L+ +G+ N L PPV+FP
Sbjct: 376 GLKPSCTIIPLMKKDHRDNLEFFLAGIGRLHLSGIDANPNALFPPVEFP 424
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%)
Query: 58 KRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEH 117
+RP+W++ SGMG+QW GM L+ + F SI +S EA++ + ++ S D TF+
Sbjct: 91 ERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDD 150
Query: 118 ILNSFVSIAAVQV 130
I++SFVS+ A+Q+
Sbjct: 151 IVHSFVSLTAIQI 163
>pdb|3KG6|A Chain A, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|B Chain B, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|C Chain C, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|D Chain D, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
Length = 285
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 26/155 (16%)
Query: 318 LSKEEDAYLSGHAIDGRILFPATGTEE----AVEHFLQKIESIPRDDEFIALLHEIHNTN 373
+ E YL+ H + G++LFP+TG E A + E + D I I T
Sbjct: 26 IGAESPGYLNHHQVFGKVLFPSTGYLEIAASAGKSLFTSQEQVVVSDVDILQSLVIPETE 85
Query: 374 IAG------------------HPYRGEFELCESGSVAVSGRIRT-PEDVSKEQLDLPELT 414
I P GE + + G+I T P S+ ++DL E
Sbjct: 86 IKTVQTVVSFAENNSYKFEIFSPSEGENQQTPQWVLHAQGKIYTEPTRNSQAKIDL-EKY 144
Query: 415 PAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQ 449
A S+ +E+ + Y++ R +G DY +F+G+ Q
Sbjct: 145 QAECSQAIEIE--EHYREYRSKGIDYGSSFQGIKQ 177
>pdb|3KG9|A Chain A, Dehydratase Domain From Curk Module Of Curacin Polyketide
Synthase
pdb|3KG9|B Chain B, Dehydratase Domain From Curk Module Of Curacin Polyketide
Synthase
Length = 296
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 36/160 (22%)
Query: 318 LSKEEDAYLSGHAIDGRILFPATG--------------TEEAV--------------EHF 349
L+ E AYLS H + ++LFPATG T E V E
Sbjct: 31 LTAESPAYLSQHQVFNKVLFPATGYLEIAAAVGKNLLTTGEQVVVSDVTIVRGLVIPETD 90
Query: 350 LQKIESIPRDDEFIALLHEIHNTNIAGHPYRGEFELCESGSVAVSGRIRTPEDVSKEQLD 409
++ ++++ E + EI +T+ + ++ L G + + T + EQ
Sbjct: 91 IKTVQTVISTLENNSYKLEIFSTSEGDNQQANQWTLHAEGKIFLDSTTNTKAKIDLEQYQ 150
Query: 410 LPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQ 449
S+++++ Y+ + RG DY +F+G+ Q
Sbjct: 151 RE------CSQVIDIQQH--YQQFKSRGIDYGNSFQGIKQ 182
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 57 EKRPVWYVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEAL 96
+ R V ++F G GSQWAGM LL PVF IR E++
Sbjct: 530 DGRNVVFLFPGQGSQWAGMGAELLSSSPVFAGKIRACDESM 570
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 26 EKRPVWYVFSGMGSQWAGMVKGLL-HIPDFNGEKR 59
+ R V ++F G GSQWAGM LL P F G+ R
Sbjct: 530 DGRNVVFLFPGQGSQWAGMGAELLSSSPVFAGKIR 564
>pdb|4AMM|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 401
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 135 HAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNL 194
HAFHS +A A LR + R+ P R R ++S++ W A + V L
Sbjct: 275 HAFHSPLMAPAAEALRRAAGRL---PWRRPERPVASTVTGAWW----ADEDPVEVLVRQL 327
Query: 195 LSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVSI 236
PV F EAL + + +++E+ P +L A+ + A AVS+
Sbjct: 328 TGPVRFREALGLL-DADLLVEVGPGRMLSALAEAAGRTAVSL 368
>pdb|4AMN|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
pdb|4AMP|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 135 HAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNL 194
HAFHS +A A LR + R+ P R R ++S++ W A + V L
Sbjct: 278 HAFHSPLMAPAAEALRRAAGRL---PWRRPERPVASTVTGAWW----ADEDPVEVLVRQL 330
Query: 195 LSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVSI 236
PV F EAL + + +++E+ P +L A+ + A AVS+
Sbjct: 331 TGPVRFREALGLL-DADLLVEVGPGRMLSALAEAAGRTAVSL 371
>pdb|4AMO|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 135 HAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNL 194
HAFHS +A A LR + R+ P R R ++S++ W A + V L
Sbjct: 278 HAFHSPLMAPAAEALRRAAGRL---PWRRPERPVASTVTGAWW----ADEDPVEVLVRQL 330
Query: 195 LSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVSI 236
PV F EAL + + +++E+ P +L A+ + A AVS+
Sbjct: 331 TGPVRFREALGLL-DADLLVEVGPGRMLSALAEAAGRTAVSL 371
>pdb|1B9H|A Chain A, Crystal Structure Of 3-Amino-5-Hydroxybenzoic Acid (Ahba)
Synthase
Length = 388
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 24/144 (16%)
Query: 231 PGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEW 290
P AV+ +T R +P H+ AGL ++ L K G P++Q
Sbjct: 116 PEAVAAAVTPRTKVIMPVHM---------AGLMADMDAL---AKISADTGVPLLQDAAH- 162
Query: 291 DHSTEWSVASFAGKGGSRSGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFL 350
H W G R GE S + ++ G ++FP TE+ FL
Sbjct: 163 AHGARWQ--------GKRVGELDSIATFSFQNGKLMTA-GEGGAVVFPDGETEKYETAFL 213
Query: 351 QKIESIPRDDEFIALLHEIHNTNI 374
+ PRDD H+I +N+
Sbjct: 214 RHSCGRPRDDR--RYFHKIAGSNM 235
>pdb|1B9I|A Chain A, Crystal Structure Of 3-Amino-5-Hydroxybenzoic Acid (Ahba)
Synthase
Length = 388
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 24/144 (16%)
Query: 231 PGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEW 290
P AV+ +T R +P H+ AGL ++ L K G P++Q
Sbjct: 116 PEAVAAAVTPRTKVIMPVHM---------AGLMADMDAL---AKISADTGVPLLQDAAH- 162
Query: 291 DHSTEWSVASFAGKGGSRSGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFL 350
H W G R GE S + ++ G ++FP TE+ FL
Sbjct: 163 AHGARWQ--------GKRVGELDSIATFSFQNGKLMTA-GEGGAVVFPDGETEKYETAFL 213
Query: 351 QKIESIPRDDEFIALLHEIHNTNI 374
+ PRDD H+I +N+
Sbjct: 214 RHSCGRPRDDR--RYFHKIAGSNM 235
>pdb|1IDK|A Chain A, Pectin Lyase A
Length = 359
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 365 LLHEIHNT--NIAGHPYRGEFELCESGSVAVSGRIRTPEDVSKEQLDLPELTPAISSEML 422
LLH ++N +I+GH FE+ E G V G + D E + T SS
Sbjct: 245 LLHAVNNYWYDISGHA----FEIGEGGYVLAEGNVFQNVDTVLETYEGEAFTVP-SSTAG 299
Query: 423 ELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGK 458
E+ S + +D + G+ SG F S S F GK
Sbjct: 300 EVCSTYLGRDCVINGFGSSGTFSEDSTSFLSDFEGK 335
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 58 KRPVWYVFSGMGSQWAGMVKGLLH-IPVFDQSIRKSAEAL 96
+R V VF G G+QW G + LL VF SIR AL
Sbjct: 550 RRGVAXVFPGQGAQWQGXARDLLRESQVFADSIRDCERAL 589
>pdb|1IDJ|A Chain A, Pectin Lyase A
pdb|1IDJ|B Chain B, Pectin Lyase A
Length = 359
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 365 LLHEIHNT--NIAGHPYRGEFELCESGSVAVSGRIRTPEDVSKEQLDLPELTPAISSEML 422
LLH ++N +I+GH FE+ E G V G + D E + T S+
Sbjct: 245 LLHCVNNYFYDISGHA----FEIGEGGYVLAEGNVFQNVDTVLETYEGAAFTVP-STTAG 299
Query: 423 ELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGK 458
E+ S + +D + G+ SG F S S F GK
Sbjct: 300 EVCSTYLGRDCVINGFGCSGTFSEDSTSFLSDFEGK 335
>pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp
pdb|1W7K|A Chain A, E.Coli Folc In Complex With Adp, Without Folate Substrate
Length = 422
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 334 RILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAG 376
R++F A E+ +++++P++ +A++ +H+ +IAG
Sbjct: 298 RVIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAG 340
>pdb|2CF2|B Chain B, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|K Chain K, Architecture Of Mammalian Fatty Acid Synthase
Length = 304
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 136 AFHSKYIAEAGPKLRSSLDRIIPA-PK-----PRSARWISSSIPEDHWGTPLAQQSSPAY 189
AFH++++A A KL + + PA PK + R ++S GT + +
Sbjct: 189 AFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVAS-------GTEVLDR----- 236
Query: 190 HVNNLLSPVLFYEALQHVPENAV--VIEIAPHALLQAIIKRAKPGAVSIGL 238
V + +PV + ++ E V +IE+ P L + KRA PG ++ L
Sbjct: 237 LVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLAL 287
>pdb|2CDH|4 Chain 4, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|5 Chain 5, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|6 Chain 6, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|7 Chain 7, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|8 Chain 8, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|9 Chain 9, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|M Chain M, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|N Chain N, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|O Chain O, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|P Chain P, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Q Chain Q, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|R Chain R, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 305
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 136 AFHSKYIAEAGPKLRSSLDRIIPA-PK-----PRSARWISSSIPEDHWGTPLAQQSSPAY 189
AFH++++A A KL + + PA PK + R ++S GT + +
Sbjct: 190 AFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVAS-------GTEVLDR----- 237
Query: 190 HVNNLLSPVLFYEALQHVPENAV--VIEIAPHALLQAIIKRAKPGAVSIGL 238
V + +PV + ++ E V +IE+ P L + KRA PG ++ L
Sbjct: 238 LVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLAL 288
>pdb|1NM2|A Chain A, "malonyl-Coa:acp Transacylase"
Length = 317
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 136 AFHSKYIAEAGPKLRSSLDRIIPA-PK-----PRSARWISSSIPEDHWGTPLAQQSSPAY 189
AFH++++A A KL + + PA PK + R ++S GT + +
Sbjct: 200 AFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVAS-------GTEVLDR----- 247
Query: 190 HVNNLLSPVLFYEALQHVPENAV--VIEIAPHALLQAIIKRAKPGAVSIGL 238
V + +PV + ++ E V +IE+ P L + KRA PG ++ L
Sbjct: 248 LVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLAL 298
>pdb|2ZYH|A Chain A, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
pdb|2ZYH|B Chain B, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
Length = 475
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 64 VFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSE--------DADTF 115
+FSG+GS++ + ++ D+ + KS E L E F + + E D
Sbjct: 74 LFSGLGSEFGLNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLV 133
Query: 116 EHILNSFVSIAAVQVSENRHA 136
H + +F + V S R A
Sbjct: 134 GHAMGTFFLVRYVNSSPERAA 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,710,550
Number of Sequences: 62578
Number of extensions: 753867
Number of successful extensions: 2079
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2038
Number of HSP's gapped (non-prelim): 48
length of query: 521
length of database: 14,973,337
effective HSP length: 103
effective length of query: 418
effective length of database: 8,527,803
effective search space: 3564621654
effective search space used: 3564621654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)