RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9440
(521 letters)
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 306 bits (784), Expect = 1e-91
Identities = 166/405 (40%), Positives = 218/405 (53%), Gaps = 20/405 (4%)
Query: 136 AFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLL 195
AFHS ++ P L L ++I PKPRS RW+S+SIPE W LA+ S Y VNNL+
Sbjct: 681 AFHSYFMESIAPTLLRQLRKVILDPKPRSKRWLSTSIPEAQWQGSLARTFSAEYSVNNLV 740
Query: 196 SPVLFYEALQHVPENAVVIEIAPHALLQAIIKR-AKPGAVSIGLTKRGAPDLPAHLLSGL 254
SPVLF EALQHVP +AVV+EIAPHALLQA++KR + I L K+ D LS +
Sbjct: 741 SPVLFQEALQHVPAHAVVVEIAPHALLQAVLKRSLESSCTIIPLMKKDHRDNLEFFLSNV 800
Query: 255 GKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSVASFAG--KGGSRSGEC 312
G+L+ AG+ N L PPV+FP RGTP+I ++WDHS W V S A G S S
Sbjct: 801 GRLHLAGVSVNPNGLFPPVEFPAPRGTPLISPHIKWDHSQAWDVPSAADFPSGSSCSSVA 860
Query: 313 VIDVDLSKE-EDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIH- 370
V D+S E D YL H IDGR+LFP TG L + S +E + ++
Sbjct: 861 VYKFDVSPESPDHYLVDHCIDGRVLFPGTGYLWLTWKTLARALS-QNLEETPVVFEDVTL 919
Query: 371 ------------NTNIAGHPYRGEFELCES-GSVAVSGRIRTPEDVSKEQLDLPE-LTPA 416
+ + FE+ +S GS+ SG++ E + D + PA
Sbjct: 920 HQATILPKTGTVSLEVRLLEASHAFEVSDSNGSLIASGKVYQWESPDPKLFDTRAAVDPA 979
Query: 417 ISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKLDWTGNWISYIDTMLQFS 476
S+ LS DVYKDLRLRGYDY F+ V +SD +G G+L W +W+S++D ML S
Sbjct: 980 DSTAEFRLSQGDVYKDLRLRGYDYGPFFQLVLESDLEGNRGRLQWNDSWVSFLDAMLHMS 1039
Query: 477 ILGINTRELYLPTRMQRVCIDPAKHKALVETLSGDKKTVPVAMYR 521
IL LYLPTR + IDP H+ + TL + V + R
Sbjct: 1040 ILAPGQLGLYLPTRFTSIRIDPVTHRQKLYTLQDTTQAADVVVDR 1084
Score = 98.0 bits (244), Expect = 2e-21
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 56 GEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTF 115
G KRPVW++ SGMG+QW GM L+ + F SI +S +AL+ + ++ S D
Sbjct: 487 GSKRPVWFICSGMGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLLSTDEAVL 546
Query: 116 EHILNSFVSIAAVQVS 131
+ I++SFVS+ ++Q++
Sbjct: 547 DDIVSSFVSLTSIQIA 562
Score = 44.5 bits (105), Expect = 9e-05
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 336 LFPATG-TEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRG 381
L A+G T EAV+ L++ RD F+ +L+EI + P+RG
Sbjct: 423 LLQASGRTLEAVQTLLEQGLRHSRDLAFVGMLNEIAAVSPVAMPFRG 469
Score = 37.6 bits (87), Expect = 0.013
Identities = 14/21 (66%), Positives = 20/21 (95%)
Query: 1 IALVDLLSSVGISPEGIVGHS 21
IAL+DLL+S+G+ P+GI+GHS
Sbjct: 561 IALIDLLTSLGLQPDGIIGHS 581
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 233 bits (596), Expect = 2e-67
Identities = 114/285 (40%), Positives = 161/285 (56%), Gaps = 18/285 (6%)
Query: 135 HAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNL 194
AFHS ++ P L L ++I PKPRSARW+S+SIPE W + LA+ SS Y+VNNL
Sbjct: 682 MAFHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSSAEYNVNNL 741
Query: 195 LSPVLFYEALQHVPENAVVIEIAPHALLQAIIKR-AKPGAVSIGLTKRGAPDLPAHLLSG 253
+SPVLF EAL HVPE+AVV+EIAPHALLQA++KR KP I L K+ D L+G
Sbjct: 742 VSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHRDNLEFFLAG 801
Query: 254 LGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSVASFAG--KGGSRSGE 311
+G+L+ +G+ N L PPV+FP RGTP+I L++WDHS W V + G
Sbjct: 802 IGRLHLSGIDANPNALFPPVEFPAPRGTPLISPLIKWDHSLAWDVPAAEDFPNGSGSPSA 861
Query: 312 CVIDVD-LSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIH 370
+ ++D S+ D YL H +DGR+LFPATG V L + ++ + ++
Sbjct: 862 AIYNIDTSSESPDHYLVDHTLDGRVLFPATGYLSIVWKTLARALG-LGVEQLPVVFEDVV 920
Query: 371 -------------NTNIAGHPYRGEFELCESGSVAVSGRIRTPED 402
+ + FE+ E+G++ VSG++ +D
Sbjct: 921 LHQATILPKTGTVSLEVRLLEASRAFEVSENGNLVVSGKVYQWDD 965
Score = 98.8 bits (247), Expect = 7e-22
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 56 GEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTF 115
+RP+W++ SGMG+QW GM L+ + F SI +S EA++ + ++ S D TF
Sbjct: 489 AGERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTF 548
Query: 116 EHILNSFVSIAAVQVS 131
+ I++SFVS+ A+Q+
Sbjct: 549 DDIVHSFVSLTAIQIG 564
Score = 37.5 bits (88), Expect = 0.011
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 1 IALVDLLSSVGISPEGIVGHS 21
I L+DLLS +G+ P+GIVGHS
Sbjct: 563 IGLIDLLSCMGLRPDGIVGHS 583
Score = 35.6 bits (83), Expect = 0.040
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 342 TEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRG 381
T EAV+ L++ +D F+++L++I P+RG
Sbjct: 432 TPEAVQKLLEQGLRHSQDLAFLSMLNDIAAVPATAMPFRG 471
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 3e-11
Identities = 71/497 (14%), Positives = 156/497 (31%), Gaps = 125/497 (25%)
Query: 82 IPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNS----------FVSIAAVQVS 131
+ VF+ + + + ++ +++ E+ +HI+ S F ++ + Q
Sbjct: 22 LSVFEDAFVDNFDCKDVQDM-PKSILSKEE---IDHIIMSKDAVSGTLRLFWTLLSKQ-E 76
Query: 132 ENRHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHV 191
E F + + L S + P + +I + + Q Y+V
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--DRLYNDN---QVFAKYNV 131
Query: 192 NNLLSPVL-FYEALQHV-PENAVVIE---------IAPHALLQAIIKRAKPGAVS-IGLT 239
+ L P L +AL + P V+I+ +A L ++ + + L
Sbjct: 132 SRL-QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 240 KRGAPDLPAHLLSGLGKLYNAGLQPRLNQLL---PPVKFPVGRGTPMIQSLVEW------ 290
+P+ +L L KL + P +K + ++ L++
Sbjct: 191 NCNSPET---VLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 291 ----DH-STEWSVASFAGKGGSRSGEC----------VIDVDLSKEEDAYLSGHAIDGRI 335
+ + +F C V D + H
Sbjct: 247 LLVLLNVQNAKAWNAFNLS-------CKILLTTRFKQVTDFLSAATTTHISLDHHSMT-- 297
Query: 336 LFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGEFELCESGSVAVSG 395
+E L+ ++ P+D L E+ +P +++
Sbjct: 298 -L---TPDEVKSLLLKYLDCRPQD-----LPREVL----TTNPR----------RLSIIA 334
Query: 396 -RIRTPEDVSK--EQLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDN 452
IR + ++ +LT I S + L A+ Y+ + +D F +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKM----FDRLSVFP-----PS 384
Query: 453 KGFTGK---LDWTGNWISYIDTML------QFSILGINTRE-------LYLPTRMQRVCI 496
L W + D M+ ++S++ +E +YL +++
Sbjct: 385 AHIPTILLSLIWFD--VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE-N 441
Query: 497 DPAKHKALVETLSGDKK 513
+ A H+++V+ + K
Sbjct: 442 EYALHRSIVDHYNIPKT 458
Score = 43.3 bits (101), Expect = 2e-04
Identities = 68/476 (14%), Positives = 124/476 (26%), Gaps = 157/476 (32%)
Query: 26 EKRPVWYVF-SGM---GSQW-AGMV---KGLLHIPDFN------GEKRPVWYVFSGMGSQ 71
E RP V G+ G W A V + DF V +
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 72 WAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIP-------------VITSEDADTFEH- 117
+ +I+ +++ E L+ V ++ + F
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 118 ----ILNSFVSIAA---------VQVSENRHAFH--------SKYIAEAGPKLRSSLDRI 156
+ F + + + + KY+ L +
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 157 IP--------APKPRSARWISSSIPEDHWGTPL------AQQSSPAYHVNNLLSPVLF-- 200
P + + A W D+W +SS +N L P +
Sbjct: 326 NPRRLSIIAESIRDGLATW-------DNWKHVNCDKLTTIIESS----LNVL-EPAEYRK 373
Query: 201 -YEALQHVPENAVVIEIAPHALLQ----------------------AIIKRAKPGAVSI- 236
++ L P + I P LL + K+ K +SI
Sbjct: 374 MFDRLSVFPPS-AHI---PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 237 GL---TKRGAPDLPA-H--LLSGLGKLYNAGLQPRLNQLLPPVKFP-----VGRGTPMIQ 285
+ K + A H ++ YN + L+PP +G
Sbjct: 430 SIYLELKVKLENEYALHRSIVDH----YNIPKTFDSDDLIPPYLDQYFYSHIGH------ 479
Query: 286 SLVEWDHSTEWSVAS-------F-------AGKGGSRSGECVIDV--DLSKEEDAYLSGH 329
L +H ++ F + SG +++ L +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS-ILNTLQQLKFYKPYICDND 538
Query: 330 AIDGRILFPATGTEEAVEHFLQKIESIPRDDEF-----IALLHEIHNTNIAGHPYR 380
R++ A+ FL KIE ++ IAL+ E + I ++
Sbjct: 539 PKYERLV-------NAILDFLPKIEENLICSKYTDLLRIALMAE--DEAIFEEAHK 585
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 59.6 bits (145), Expect = 9e-10
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 15/143 (10%)
Query: 129 QVSENRHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPA 188
VS HAFHS +A A LR + R+ P S+ G A +
Sbjct: 272 AVS---HAFHSPLMAPAAEALRRAAGRLPWRR-PE-RPVASTVT-----GAWWADEDPVE 321
Query: 189 YHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVSIGLTKRGAPDLPA 248
V L PV F EAL + + +++E+ P +L A+ + A AVS+ GA A
Sbjct: 322 VLVRQLTGPVRFREALGLL-DADLLVEVGPGRMLSALAEAAGRTAVSL---DAGAAS-AA 376
Query: 249 HLLSGLGKLYNAGLQPRLNQLLP 271
+ +G L+ AG
Sbjct: 377 GMAAGTAALFAAGAVDDATPFFA 399
Score = 31.1 bits (71), Expect = 0.88
Identities = 4/46 (8%), Positives = 9/46 (19%), Gaps = 6/46 (13%)
Query: 54 FNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGE 99
G V +F G + + + +
Sbjct: 92 VVGGPLRVGLLFPGQAAPVHADR------GALGHLLGDADAGTGSD 131
Score = 28.8 bits (65), Expect = 4.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 2 ALVDLLSSVGISPEGIVGHS 21
A + L +G P G +GHS
Sbjct: 157 AGIRWLDRLGARPVGALGHS 176
Score = 27.7 bits (62), Expect = 9.3
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 23 FNGEKRPVWYVFSGMGSQWAGM 44
G V +F G +
Sbjct: 92 VVGGPLRVGLLFPGQAAPVHAD 113
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 9e-09
Identities = 68/411 (16%), Positives = 127/411 (30%), Gaps = 168/411 (40%)
Query: 38 GSQWAGMVKGLLHIPDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALR 97
GSQ GM GM + K+++A +
Sbjct: 1625 GSQEQGM----------------------GM-------------------DLYKTSKAAQ 1643
Query: 98 GENFDLIPVITSEDADTFEHILNSF-VSIAAVQVSEN--RHAFHSKYIAEAGPKLRSSLD 154
+ ++ AD H +++ SI + V N H + E G ++R +
Sbjct: 1644 -DVWN--------RAD--NHFKDTYGFSILDI-VINNPVNLTIH--FGGEKGKRIRENYS 1689
Query: 155 RIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLFY--EALQHVPENA- 211
+I + + I ++ +N + F + L +
Sbjct: 1690 AMIFETIV-DGKLKTEKIFKE---------------INEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 212 ---VVIEIAPHALLQAIIKRAKPGAVSIGLTKRGAPDLPA----HLLSGLGKLYNA---- 260
++E A L++ +G A H S LG+ Y A
Sbjct: 1734 PALTLMEKAAFEDLKS----------------KGLIPADATFAGH--S-LGE-YAALASL 1773
Query: 261 -GLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSVASFAGKGGSRSGECVIDVDLS 319
+ + L+ V + RG +Q V D G S G I+
Sbjct: 1774 ADVMS-IESLVEVVFY---RGM-TMQVAVPRDEL-----------GRSNYGMIAIN---- 1813
Query: 320 KEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPY 379
GR+ A+ ++EA+++ ++++ R + EI N N+
Sbjct: 1814 ------------PGRVA--ASFSQEALQYVVERVGK--RTGWLV----EIVNYNVEN--- 1850
Query: 380 RGEFELCESGSVAVSGRIRTPEDVS------KEQ-LDLPELTPAISSEMLE 423
+G +R + V+ K Q +D+ EL ++S E +E
Sbjct: 1851 ---------QQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Score = 55.1 bits (132), Expect = 5e-08
Identities = 55/272 (20%), Positives = 82/272 (30%), Gaps = 97/272 (35%)
Query: 14 PEGIVGHSDFNGEKRPVWYVFSGMGSQWAGMVKGL---------------------LHIP 52
P I+ S N E P S M S + L + I
Sbjct: 320 PPSILEDSLENNEGVP-----SPMLS-----ISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 53 DFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDA 112
NG K V V +G + L + ++RK A+A G + IP SE
Sbjct: 370 LVNGAKNLV--V--------SGPPQSLYG---LNLTLRK-AKAPSGLDQSRIPF--SERK 413
Query: 113 DTFEHILNSFVSIAAVQVSENRHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSS- 171
F + F+ +A+ FHS + A + L + + + +
Sbjct: 414 LKFSN---RFLPVAS--------PFHSHLLVPASDLINKDLVK-------NNVSFNAKDI 455
Query: 172 -IP----EDHWGTPLAQQSSPAYHVNNLLSPVLFYEALQHVP---ENAVVIEIAPHALLQ 223
IP D G+ L S +S + + + +P E + A H L
Sbjct: 456 QIPVYDTFD--GSDLRVLSGS-------ISERIV-DCIIRLPVKWETTTQFK-ATHILDF 504
Query: 224 AIIKRAKPGAVSIGLTKRGAPDLPAHLLSGLG 255
PG S GL L G G
Sbjct: 505 G------PGGAS-GLGV-----LTHRNKDGTG 524
Score = 45.0 bits (106), Expect = 7e-05
Identities = 52/292 (17%), Positives = 97/292 (33%), Gaps = 91/292 (31%)
Query: 298 VASFAGKGGSRSGECVIDVDLSKEEDAYLSG---HAIDGRILFPATGTEEAVEHFLQK-- 352
V+S + V+++ L++ E+ YL G HA+ ++L T + ++
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 353 ------------------IESIPRDD-EFIAL-------------LHEIHNTNIAGHPYR 380
++ + + +A+ L +++ T Y
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT------YH 181
Query: 381 GEFE-LCESGSVAVSGRIRTPEDVSK---EQLDL------PELTP--------AISSEML 422
L + + +S IRT D K + L++ P TP IS ++
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 423 ELSSADVYK-DLRLRGYDYSGAFRGVSQSDNKGFTGKLDW---------TGNWISYIDTM 472
+ Y +L G+ G R + G TG T +W S+ ++
Sbjct: 242 GVIQLAHYVVTAKLLGFTP-GELRSYLK----GATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 473 LQ-----FSILGINTRELYLPTRMQRVCIDPAKHKALVETLSGDKKTVPVAM 519
+ F I G+ E Y P + P+ + +E G VP M
Sbjct: 297 RKAITVLFFI-GVRCYEAY-P----NTSLPPSILEDSLENNEG----VPSPM 338
Score = 39.3 bits (91), Expect = 0.003
Identities = 47/329 (14%), Positives = 86/329 (26%), Gaps = 156/329 (47%)
Query: 253 GLGK-LYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWD----HSTE---WSVAS---- 300
G+G LY + W+ H + +S+
Sbjct: 1630 GMGMDLYK--------------TSKAAQDV--------WNRADNHFKDTYGFSILDIVIN 1667
Query: 301 --------FAGKGGSRSGE-------------CVIDVDLSKEEDAYLSGHAIDG--RILF 337
F G+ G R E + + KE + + + + +L
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 338 ------PA-TGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGEFELCESGS 390
PA T E+A L+ IP D F AGH GE+ +
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATF------------AGHSL-GEY----AAL 1770
Query: 391 VAVSGRIRTPEDVSKEQLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQS 450
+++ + + E + +E+ + RG + +
Sbjct: 1771 ASLADVM-SIESL------------------VEV--------VFYRG-------MTMQVA 1796
Query: 451 DNKGFTGKLDWTGNWISYIDTMLQFSILGINTRELYLPTRM---------QRVCIDPAKH 501
+ G+ + + ++ IN P R+ Q V K
Sbjct: 1797 VPRDELGRSN--------------YGMIAIN------PGRVAASFSQEALQYVVERVGKR 1836
Query: 502 KA-LVET-----------LSGDKKTVPVA 518
LVE +GD + +
Sbjct: 1837 TGWLVEIVNYNVENQQYVAAGDLRALDTV 1865
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 53.8 bits (130), Expect = 9e-08
Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 16/147 (10%)
Query: 135 HAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNL 194
+A HS + +L + L I +P S++ + + AY NL
Sbjct: 742 YASHSPQVESLREELLTELAGI--SPVSADVALYSTTTGQPIDTATM----DTAYWYANL 795
Query: 195 LSPVLFYEALQHVPEN--AVVIEIAPHALLQAII-------KRAKPGAVSIGLTKRGAPD 245
V F +A + + E +E++PH +L I A GA +G +R
Sbjct: 796 REQVRFQDATRQLAEAGFDAFVEVSPHPVLTVGIEATLDSALPADAGACVVGTLRRDRGG 855
Query: 246 LPAHLLSGLGKLYNAGLQPRLNQLLPP 272
A + LG+ Y G++ +
Sbjct: 856 -LADFHTALGEAYAQGVEVDWSPAFAD 881
Score = 45.7 bits (109), Expect = 3e-05
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 59 RPVWYVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGE-NFDLIPVITSEDA 112
VF G G+QW GM + LL VF SIR AL ++ L +++
Sbjct: 552 GVAM-VFPGQGAQWQGMARDLLRESQVFADSIRDCERALAPHVDWSLTDLLSGARP 606
Score = 35.7 bits (83), Expect = 0.041
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 13 SPEGIVGHSDFNGEKRPVWYVFSGMGSQWAGMVKGLL 49
+ G + VF G G+QW GM + LL
Sbjct: 539 ADRTATGQARTRR--GVAM-VFPGQGAQWQGMARDLL 572
Score = 28.0 bits (63), Expect = 8.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 1 IALVDLLSSVGISPEGIVGHS 21
++L L S G+ P +VGHS
Sbjct: 622 VSLAALWRSHGVEPAAVVGHS 642
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 53.8 bits (130), Expect = 1e-07
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 15/146 (10%)
Query: 135 HAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNL 194
+A HS I +L + I AP+P + S+ GT L Y NL
Sbjct: 726 YASHSPQIERVREELLETTGDI--APRPARVTFHSTVESRSMDGTEL----DARYWYRNL 779
Query: 195 LSPVLFYEALQHVPEN--AVVIEIAPHALLQAII------KRAKPGAVSIGLTKRGAPDL 246
V F +A+ + E+ IE++PH ++ + AV +G R D
Sbjct: 780 RETVRFADAVTRLAESGYDAFIEVSPHPVVVQAVEEAVEEADGAEDAVVVGSLHRDGGD- 838
Query: 247 PAHLLSGLGKLYNAGLQPRLNQLLPP 272
+ L + + +G+ R + LP
Sbjct: 839 LSAFLRSMATAHVSGVDIRWDVALPG 864
Score = 46.9 bits (112), Expect = 2e-05
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 56 GEKRPVWYVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGE-NFDLIPVIT-SEDA 112
+ V+ +F G GSQWAGM LL PVF IR E++ ++ + V+ + A
Sbjct: 530 DGRNVVF-LFPGQGSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDVLRQAPGA 588
Query: 113 DTFEHILNSFVSIA--AVQVS 131
+ + V AV VS
Sbjct: 589 PGLDRV--DVVQPVLFAVMVS 607
Score = 39.9 bits (94), Expect = 0.002
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 13 SPEGIVGHSDFNGEKRPVWYVFSGMGSQWAGMVKGLL 49
+ + +V + V+ +F G GSQWAGM LL
Sbjct: 518 TADAVVEGVTEVDGRNVVF-LFPGQGSQWAGMGAELL 553
Score = 28.0 bits (63), Expect = 9.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 1 IALVDLLSSVGISPEGIVGHS 21
++L +L S G+ P +VGHS
Sbjct: 606 VSLAELWRSYGVEPAAVVGHS 626
>3kg6_A CURF; polyketide synthase, double hotdog fold, dehydratase, lyase;
2.70A {Lyngbya majuscula}
Length = 285
Score = 45.4 bits (108), Expect = 2e-05
Identities = 24/169 (14%), Positives = 52/169 (30%), Gaps = 40/169 (23%)
Query: 309 SGECVIDVDLSKEEDAYLSGHAIDGRILFPAT---------GTEEAVEHFLQKIESI--- 356
+ + E YL+ H + G++LFP+T G + +
Sbjct: 17 EDQHRFQSYIGAESPGYLNHHQVFGKVLFPSTGYLEIAASAGKSLFTSQEQVVVSDVDIL 76
Query: 357 ------------------PRDDEFIALLHEIHNTNIAGHPYRGEFELCESGSVAVSGRIR 398
++ EI + + + ++ L G +
Sbjct: 77 QSLVIPETEIKTVQTVVSFAENNSYKF--EIFSPSEGENQQTPQWVLHAQGKIYTEPTRN 134
Query: 399 TPEDVSKEQLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGV 447
+ + DL + S + + Y++ R +G DY +F+G+
Sbjct: 135 SQAKI-----DLEKYQAECSQA---IEIEEHYREYRSKGIDYGSSFQGI 175
>3kg9_A CURK; polyketide synthase, double hotdog fold, dehydratase, lyase;
1.70A {Lyngbya majuscula}
Length = 296
Score = 44.2 bits (105), Expect = 5e-05
Identities = 33/160 (20%), Positives = 57/160 (35%), Gaps = 40/160 (25%)
Query: 318 LSKEEDAYLSGHAIDGRILFPATGTEE----AVEHFLQKIESI----------------- 356
L+ E AYLS H + ++LFPATG E ++ L E +
Sbjct: 31 LTAESPAYLSQHQVFNKVLFPATGYLEIAAAVGKNLLTTGEQVVVSDVTIVRGLVIPETD 90
Query: 357 ---------PRDDEFIALLHEIHNTNIAGHPYRGEFELCESGSVAVSGRIRTPEDVSKEQ 407
++ L EI +T+ + ++ L G + + T +
Sbjct: 91 IKTVQTVISTLENNSYKL--EIFSTSEGDNQQANQWTLHAEGKIFLDSTTNTKAKI---- 144
Query: 408 LDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGV 447
DL + S + Y+ + RG DY +F+G+
Sbjct: 145 -DLEQYQRECSQV---IDIQQHYQQFKSRGIDYGNSFQGI 180
>3kg8_A CURJ; polyketide synthase, double hotdog fold, dehydratase, lyase;
2.45A {Lyngbya majuscula}
Length = 308
Score = 40.4 bits (95), Expect = 0.001
Identities = 23/169 (13%), Positives = 54/169 (31%), Gaps = 34/169 (20%)
Query: 309 SGECVIDVDLSKEEDAYLSGHAIDGRILFPATG---------------TEEAVEHF---- 349
S E + S E +L+ H + +++ P TE +E
Sbjct: 21 SKEIFFESYFSTENLPFLADHIVYEQVVVPGASHISLLLAAASLTFAATECQIEDILFPQ 80
Query: 350 -----------LQKIESIPRDDEFIALLHEIHNTNIAGHPYRGEFELCESGSVAVSGRIR 398
+Q + + + ++ + + +V +G++
Sbjct: 81 ALAIPEQGVRTVQVVLTPQNNSFSFQVISFDDSLESQINQVSNNGSHISDWAVHATGKLS 140
Query: 399 TPEDVSKEQLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGV 447
+ + + L E+ S + + SA++Y+ L R +FR +
Sbjct: 141 -VANAEQSLIPLEEIQARCSQK---IDSAEIYQHLWDRQIHLGQSFRWI 185
>3hrq_A PKS, aflatoxin biosynthesis polyketide synthase; hot-DOG fold,
iterative type I PKS, norsolorinic acid, product
template domain; HET: PLM; 1.80A {Aspergillus
parasiticus} PDB: 3hrr_A*
Length = 357
Score = 40.1 bits (93), Expect = 0.001
Identities = 28/282 (9%), Positives = 70/282 (24%), Gaps = 80/282 (28%)
Query: 281 TPMIQSLVEWDHSTEWSVASFAGKGGSRSGECVIDVDLSKEE-DAYLSGHAIDGRILFPA 339
T + +VE V++ D+S+++ + GH +DG L
Sbjct: 6 TTTLHRVVEETTKPL-------------GATLVVETDISRKDVNGLARGHLVDGIPLCTP 52
Query: 340 TG----TEEAVEHFLQKIESIPRDDEFIALLHEIHNTNI--------------------- 374
+ + ++ +Q++ + I L ++ + +
Sbjct: 53 SFYADIAMQVGQYSMQRLRAGHPGAGAIDGLVDVSDMVVDKALVPHGKGPQLLRTTLTME 112
Query: 375 -----AGHPYRGEFELCESGSVA------VSGRIRTPEDVSKEQLDLPELTPAISSEMLE 423
A + + + S +R D + L L
Sbjct: 113 WPPKAAATTRSAKVKFATYFADGKLDTEHASCTVRFTSDAQLKSLRRSVSEYKTHIRQLH 172
Query: 424 ----------LSSADVYKDLRLRGYDYSGAFRGVSQ----SDNKGFTGKL------DWTG 463
+ YK L ++ + + +
Sbjct: 173 DGHAKGQFMRYNRKTGYK-LMSSMARFNPDYMLLDYLVLNEAENEAASGVDFSLGSSEGT 231
Query: 464 NWIS--YIDTMLQFSILGIN-------TRELYLPTRMQRVCI 496
++D + Q + +N +++Y+ I
Sbjct: 232 FAAHPAHVDAITQVAGFAMNANDNVDIEKQVYVNHGWDSFQI 273
>3el6_A Erythromycin dehydratase; dehydratase double hotdog fold
CIS-proline, acyltransferase, antibiotic biosynthesis;
1.85A {Saccharopolyspora erythraea}
Length = 313
Score = 39.7 bits (93), Expect = 0.002
Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 33/162 (20%)
Query: 309 SGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAV-------------EHFLQKIES 355
G V LS +E +L+ H + GR L P + + E LQ+
Sbjct: 49 HGGAVFTGRLSTDEQPWLAEHVVGGRTLVPGSVLVDLALAAGEDVGLPVLEELVLQRPLV 108
Query: 356 IPRDDEFIALLHEIHNTNIAGHPYRGEFELCESGSVA----------VSGRIRTPEDVSK 405
+ + + R ++ + VA +G +
Sbjct: 109 LAGAGALLRMS-----VGAPDESGRRTIDVHAAEDVADLADAQWSQHATGTLAQGVAA-- 161
Query: 406 EQLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGV 447
D + P + + D Y L +GY+Y +F+ +
Sbjct: 162 GPRDTEQWPPEDAVR---IPLDDHYDGLAEQGYEYGPSFQAL 200
>3kg7_A CURH; polyketide synthase, double hotdog fold, dehydratase, lyase;
2.77A {Lyngbya majuscula}
Length = 293
Score = 38.1 bits (89), Expect = 0.005
Identities = 17/159 (10%), Positives = 41/159 (25%), Gaps = 24/159 (15%)
Query: 309 SGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEE----AVEH-------FLQKIESIP 357
+G+ + D++ ++ H + + P AV Q+ +
Sbjct: 21 TGQTIYHQDINLNNHPWIGDHRVYDTPVIPGVSYIAMTLAAVGVPAAVEDINFQQPLFLA 80
Query: 358 RDDEFIALLHEIHNTNIAGHPYRGEFELCESGSVA-------VSGRIRTPEDVSKEQLDL 410
+ +H + G + E+ S +
Sbjct: 81 ESNTTRETQLMLHTADNVG---KQFVEVFSRDGAKQEEWQQHASMSVSENPPPPPTLSVD 137
Query: 411 PELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQ 449
PA+ ++ L + + + Y + V Q
Sbjct: 138 I---PALCEQLRPLDTDTLTEIYASISLVYGPMLQAVRQ 173
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta
hydrolase-like core; 2.00A {Streptomyces coelicolor}
SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B
Length = 317
Score = 37.5 bits (88), Expect = 0.008
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 63 YVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADT 114
V G G+Q G + L +P + ++A+ DL T DAD
Sbjct: 5 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAI---GLDLAHFGTKADADE 53
Score = 31.8 bits (73), Expect = 0.46
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 20/111 (18%)
Query: 136 AFHSKYIAEAGPKLRSSLDRI-IPAPK-P----RSARWISSSIPEDHWGTPLAQQSSPAY 189
AFH++++A A KL + + PK + R ++S L Q
Sbjct: 200 AFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVASG---TEVLDRLVGQ----- 251
Query: 190 HVNNLLSPVLFYEALQHVPENAV--VIEIAPHALLQAIIKRAKPGAVSIGL 238
+ +PV + ++ E V +IE+ P L + KRA PG ++ L
Sbjct: 252 ----VANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLAL 298
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP
transacylase, , nucleophili fatty acids biosynthesis;
2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A
Length = 303
Score = 36.0 bits (84), Expect = 0.021
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 63 YVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADT 114
+ G GSQ GM+ L +P I ++A + DL + T+ +
Sbjct: 5 LLAPGQGSQTEGMLSPWLQLPGAADQIAAWSKAA---DLDLARLGTTASTEE 53
Score = 32.1 bits (74), Expect = 0.37
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 20/111 (18%)
Query: 136 AFHSKYIAEAGPKLRSSLDRI-IPAPK-P----RSARWISSSIPEDHWGTPLAQQSSPAY 189
AFH++++A A ++ I P R + ++S+ L Q
Sbjct: 193 AFHTEFMAPALDGFAAAAANIATADPTATLLSNRDGKPVTSA---AAAMDTLVSQ----- 244
Query: 190 HVNNLLSPVLFYEALQHVPENAV--VIEIAPHALLQAIIKRAKPGAVSIGL 238
L PV + + E+ V ++E P L I KR G + +
Sbjct: 245 ----LTQPVRWDLCTATLREHTVTAIVEFPPAGTLSGIAKRELRGVPARAV 291
>1yb0_A Prophage lambdaba02, N-acetylmuramoyl-L-alanine amidase, family 2;
PLYL, E.C.3.5.1.28, hydrolase; 1.86A {Bacillus
anthracis} SCOP: d.118.1.1 PDB: 2ar3_A 2l47_A
Length = 159
Score = 31.7 bits (72), Expect = 0.25
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 1 IALV-DLLSSVGISPEGIVGHSDFNGEKRPVWYVFSGMGSQWAGMVKG 47
+ +V L+S I E + H ++G+ P + G + VK
Sbjct: 109 VDVVRQLMSMYNIPIENVRTHQSWSGKYCPHRMLAEGRWGAFIQKVKS 156
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid,
acyl-carrier-protein S-malonyltransferase,
acyltransferase, transferase; 2.05A {Burkholderia
pseudomallei 1710B}
Length = 318
Score = 32.1 bits (74), Expect = 0.36
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 16/90 (17%)
Query: 63 YVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNS- 121
+VF G GSQ GM+ + V +++ ++++AL D+ +I AD LN
Sbjct: 13 FVFPGQGSQSVGMLNAFADVAVVRETLDEASDAL---GQDIGKLIADGPADE----LNLT 65
Query: 122 --------FVSIAAVQVSENRHAFHSKYIA 143
+ A + + +A
Sbjct: 66 TNTQPVMLTAAYACYRAWQQAGGAQPSIVA 95
>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase;
1.70A {Aeropyrum pernix} PDB: 3p1z_A
Length = 190
Score = 31.5 bits (71), Expect = 0.37
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 376 GHPYRGEFELCESGSVAVSGRIRTPEDVSKEQLDLPELTPAISSEMLELSSADVYKDLRL 435
G+ +G E E+ A G + E I+ L L +A VY DLR
Sbjct: 60 GYLRKGRLEPLEAAYQASRGMLCM-----GETRGWAAAVEVIAGLGLSLDTALVYFDLRR 114
Query: 436 RGY 438
+G
Sbjct: 115 KGR 117
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.63
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 148 KLRSSLDRIIPAPKPRSARWISSSI 172
KL++SL P A I +++
Sbjct: 24 KLQASLKLYADDSAPALA--IKATM 46
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase,
lipid synthesis, mitochondrion transfer transferase;
HET: AE4; 1.55A {Homo sapiens}
Length = 339
Score = 31.1 bits (71), Expect = 0.93
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 63 YVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDL 103
+F G GSQ GM +GLL+ P + + L +DL
Sbjct: 29 LLFPGQGSQVVGMGRGLLNYPRVRELYAAARRVL---GYDL 66
Score = 28.4 bits (64), Expect = 5.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 32 YVFSGMGSQWAGMVKGLLHIP 52
+F G GSQ GM +GLL+ P
Sbjct: 29 LLFPGQGSQVVGMGRGLLNYP 49
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 30.8 bits (69), Expect = 1.2
Identities = 18/140 (12%), Positives = 40/140 (28%), Gaps = 18/140 (12%)
Query: 84 VFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQVSENRHAFH-SKYI 142
++ IR+ AL NF ++ +D + + + V +++ + I
Sbjct: 14 FKEEPIRELHRALERLNFQIVYPNDRDDLLKL---IENNARLCGVIFDWDKYNLELCEEI 70
Query: 143 AEAGPKL------RSSLDRIIPAPKPRSAR---WISSSIPEDHWGTPLAQQSSPAYHVNN 193
++ L + + R + ED ++N
Sbjct: 71 SKMNENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAEDIANKIKQTTDE---YINT 127
Query: 194 LLSPVLFYEALQHVPENAVV 213
+L P +AL
Sbjct: 128 ILPP--LTKALFKYVREGKY 145
>3hma_A N-acetylmuramoyl-L-alanine amidase XLYA; endolysin, cell WALL
biogenesis/degradation, compet hydrolase, secreted,
sporulation; 2.20A {Bacillus subtilis} PDB: 3rdr_A
3hmb_A
Length = 157
Score = 29.3 bits (66), Expect = 1.7
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 1 IALV-DLLSSVGISPEGIVGHSDFN-----GEKRPVWYVF 34
L+ L++ IS +V H ++ + W F
Sbjct: 113 QWLIKTLMAEHNISLANVVPHKYWSGKECPRKLLDTWDSF 152
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics,
protein structure initiative; 2.10A {Clostridium
perfringens}
Length = 336
Score = 29.4 bits (67), Expect = 2.7
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 63 YVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGENFDLIPVITSEDADT 114
++F+G G+Q+ GM K + + ++S+EAL D+ + ++
Sbjct: 6 FLFAGQGAQYVGMGKEFFDNFEESKEVFKRSSEAL---GIDMEELCFNDPEGL 55
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken
structural genomics/proteomics initiative, RSGI; 1.30A
{Thermus thermophilus} SCOP: d.58.10.1
Length = 88
Score = 27.5 bits (62), Expect = 2.8
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 326 LSGHAI---DGRILFPATGTEEAVEHFLQKIESIPR 358
LSG+A DGR+ A G +EA+E FL ++ PR
Sbjct: 30 LSGYAENLPDGRVEVVAEGPKEALELFLHHLKQGPR 65
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis,
malonyl-COA, acyl carrier protein TRAN (MCAT), FABD,
acyltransferase; 2.10A {Streptococcus pneumoniae}
Length = 307
Score = 29.4 bits (67), Expect = 3.1
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 63 YVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGENFDL 103
++F+G G+Q+ GM + P+ ++I ++++ L +DL
Sbjct: 6 FLFAGQGAQYLGMGRDFYDQYPIVKETIDRASQVL---GYDL 44
Score = 27.9 bits (63), Expect = 9.5
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 32 YVFSGMGSQWAGMVKGL 48
++F+G G+Q+ GM +
Sbjct: 6 FLFAGQGAQYLGMGRDF 22
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose
metabolic process, PFKB family,11206G, PSI-II, NYSGXRC,
structural genomics; HET: ATP; 1.79A {Escherichia coli
O6} PDB: 3k9e_A
Length = 330
Score = 29.1 bits (66), Expect = 3.8
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 338 PATGTEEAVEHFLQKIESIPRDDEFIALLHEIH 370
T +E F+Q+ + R+ H H
Sbjct: 298 EGTSRLMEIETFIQRHDMSIREAAQEGHHHHHH 330
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty
acid/phospholipid metabolism, transferase; HET: MSE;
1.50A {Coxiella burnetii}
Length = 316
Score = 28.6 bits (65), Expect = 4.5
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
Query: 63 YVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNS 121
+VF G GSQ GM+ L P+ ++ ++++ AL +DL ++ + L+
Sbjct: 10 FVFPGQGSQHLGMLAELGLQQPIVLETFQQASSAL---AYDLWALVQHGPQER----LDQ 62
Query: 122 ---------FVSIAAVQVSENRHAFHSKYIA 143
+A + E + +A
Sbjct: 63 TQFTQPALLTADVAIFRCWEALGGPKPQVMA 93
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus
solfataricus} PDB: 2bje_A 1y9o_A
Length = 101
Score = 27.2 bits (61), Expect = 5.0
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 326 LSGHAI---DGRILFPATGTEEAVEHFLQKIESIPR 358
+ G+A DG + A G EEA+ L++I+ P
Sbjct: 42 IKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQGPP 77
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD,
xanthomonas oryzae PV. ORYZ KACC10331, transferase;
1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A*
Length = 314
Score = 28.2 bits (64), Expect = 5.7
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 17/91 (18%)
Query: 63 YVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNS 121
+VF G GSQ GM+ L P ++ +++E DL + + LN
Sbjct: 8 FVFPGQGSQSLGMLAELSELHPQIRETFAEASEGA---GVDLWALSQGGPEEM----LNR 60
Query: 122 ---------FVSIAAVQVSENRHAFHSKYIA 143
+A ++ + +A
Sbjct: 61 TEYTQPALLAAGVAVWRLWTAQRGQRPALLA 91
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid,
decode biostructures, dried seaweed, acyltran
transferase; 2.30A {Burkholderia pseudomallei}
Length = 394
Score = 28.4 bits (64), Expect = 5.9
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 22/92 (23%)
Query: 63 YVFSGMGSQWAGMVKGLL-HIP-VFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILN 120
++F G GSQ GM L + Q + L + + + + D L
Sbjct: 9 FMFPGQGSQAKGMGGALFDRFADLTAQ----ADAVL---GYSIRALCVDDPRDE----LG 57
Query: 121 S---------FVSIAAVQVSENRHAFHSKYIA 143
V+ ++A
Sbjct: 58 RTQFTQPALYVVNALTYYAKCEDSGETPDFLA 89
Score = 27.7 bits (62), Expect = 9.8
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 32 YVFSGMGSQWAGMVKGL 48
++F G GSQ GM L
Sbjct: 9 FMFPGQGSQAKGMGGAL 25
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium
cellulosum} PDB: 3rgi_A
Length = 281
Score = 28.2 bits (64), Expect = 6.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 32 YVFSGMGSQWAGMVKGL 48
Y+F G GSQ GM + L
Sbjct: 4 YMFPGQGSQAKGMGRAL 20
Score = 28.2 bits (64), Expect = 6.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 63 YVFSGMGSQWAGMVKGL 79
Y+F G GSQ GM + L
Sbjct: 4 YMFPGQGSQAKGMGRAL 20
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB:
2hlt_A 2hlu_A 3br8_A
Length = 91
Score = 26.7 bits (60), Expect = 6.4
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 332 DGRILFPATGTEEAVEHFLQKIESIPR 358
DGR+ A G E A++ F++ +++
Sbjct: 39 DGRVEILAEGPENALQSFVEAVKNGSP 65
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET:
ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A
3zzf_A*
Length = 307
Score = 28.3 bits (64), Expect = 7.0
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 202 EALQHVPENAVVIEIAPHALL 222
E L ++P ++ V I L
Sbjct: 266 ELLDYLPRSSSVAIINVQDLQ 286
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 28.5 bits (63), Expect = 7.3
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 10/105 (9%)
Query: 57 EKRPVWYVFSGMGSQWAGMVKGLLHI-----PVFDQSIRKSAEALRGENFDLIPVITSED 111
E+ YVF+G GSQ GM L V+D++ + E D++ E
Sbjct: 1668 EQPVTAYVFTGQGSQEQGMGMDLYATSPVAKEVWDRADKHFRENYGFSIIDIVKNNPKEL 1727
Query: 112 ADTFEH-----ILNSFVSIAAVQVSENRHAFHSKYIAEAGPKLRS 151
F I +++S+ V+ + K E S
Sbjct: 1728 TVHFGGPRGKIIRQNYMSMTFETVNADGSIKTEKIFKEVDENSTS 1772
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family,
nucleus, phosphoprotein, protein transport; HET: GTP;
2.92A {Homo sapiens}
Length = 1204
Score = 28.5 bits (62), Expect = 7.7
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 458 KLDWTGNWISYIDTMLQFSILGINTRELYL 487
K +W +W + + S G EL +
Sbjct: 125 KREWPQHWPDMLIELDTLSKQGETQTELVM 154
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT,
transferase; 2.50A {Helicobacter pylori}
Length = 321
Score = 27.9 bits (63), Expect = 8.0
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 63 YVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGENFDL 103
+F G GSQ GM K + + +++ AL D+
Sbjct: 17 LLFPGQGSQCIGMGKSFYEGHTLAKELFERASNAL---KVDM 55
Score = 27.9 bits (63), Expect = 9.3
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 32 YVFSGMGSQWAGMVKGL 48
+F G GSQ GM K
Sbjct: 17 LLFPGQGSQCIGMGKSF 33
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty
acid synthesis, malonyl-COA: acyl carrier protein TRAN
(MCAT), FABD; 1.46A {Staphylococcus aureus}
Length = 316
Score = 27.9 bits (63), Expect = 8.4
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 63 YVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGENFDL 103
+F G G+Q GM + L + + + +A+ L +FD+
Sbjct: 14 IIFPGQGAQKVGMAQDLFNNNDQATEILTSAAKTL---DFDI 52
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis,
amino acid kinase domain GCN5-related acetyltransferase,
GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB:
3zzi_A*
Length = 464
Score = 27.7 bits (62), Expect = 9.3
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 202 EALQHVPENAVVIEIAPHALL 222
E L ++P ++ V I L
Sbjct: 266 ELLDYLPRSSSVAIINVQDLQ 286
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.409
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,332,429
Number of extensions: 524545
Number of successful extensions: 1162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1145
Number of HSP's successfully gapped: 100
Length of query: 521
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 423
Effective length of database: 3,965,535
Effective search space: 1677421305
Effective search space used: 1677421305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)