RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9440
(521 letters)
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Escherichia coli
[TaxId: 562]}
Length = 235
Score = 68.3 bits (166), Expect = 1e-13
Identities = 33/231 (14%), Positives = 71/231 (30%), Gaps = 64/231 (27%)
Query: 63 YVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNS 121
+VF G GSQ GM+ + P+ +++ +++ AL +DL + A+ +
Sbjct: 4 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAALG---YDLWALTQQGPAEELNKTWQT 60
Query: 122 FVSIAAVQVSENRH---------------------------------------------- 135
++ V+ R
Sbjct: 61 QPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKFMQ 120
Query: 136 ------AFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAY 189
H + A KL L +I + +++ + +
Sbjct: 121 EAVPEVPSHCALMKPAADKLAVELAKI--TFNAPTVPVVNNVDVKCETNG----DAIRDA 174
Query: 190 HVNNLLSPVLFYEALQHVPENAV--VIEIAPHALLQAIIKRAKPGAVSIGL 238
V L +PV + ++++++ V + E+ P +L + KR + L
Sbjct: 175 LVRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRIVDTLTASAL 225
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Streptomyces
coelicolor A3(2) [TaxId: 100226]}
Length = 253
Score = 57.6 bits (138), Expect = 6e-10
Identities = 36/238 (15%), Positives = 68/238 (28%), Gaps = 68/238 (28%)
Query: 63 YVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHIL--- 119
V G G+Q G + L +P + ++A+ + +++
Sbjct: 5 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQPLL 64
Query: 120 --------------------------------NSFVSIAAVQVS---------------- 131
+S I A +
Sbjct: 65 VAAGILSAAALGTQTSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRRG 124
Query: 132 ---------ENRHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLA 182
AFH++++A A KL + + PA ++S+
Sbjct: 125 LAMAEAAAVTVAGAFHTRHMAPAVDKLAEAAKALTPADPKV--TYVSNKDGRAVAS---- 178
Query: 183 QQSSPAYHVNNLLSPVLFYEALQHVPENAV--VIEIAPHALLQAIIKRAKPGAVSIGL 238
V + +PV + ++ E V +IE+ P L + KRA PG ++ L
Sbjct: 179 GTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLAL 236
>d1u0sa_ d.58.24.1 (A:) CheY-binding domain of CheA {Thermotoga
maritima [TaxId: 2336]}
Length = 86
Score = 30.8 bits (70), Expect = 0.071
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 92 SAEALRGENFDL---IPVITSEDADTFEHILNSFVSIAAVQVSE 132
S E + E F+ + VI+ D + L+S I V + E
Sbjct: 42 SVEEIEEEKFENEVELFVISPVDLEKLSEALSSIADIERVIIKE 85
>d1yb0a1 d.118.1.1 (A:1-157) N-acetylmuramoyl-L-alanine amidase PlyG
{Bacillus anthracis [TaxId: 1392]}
Length = 157
Score = 31.3 bits (70), Expect = 0.13
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 11 GISPEGIVGHSDFNGEKRPVWYVFSGMGSQWAGMVKG 47
I E + H ++G+ P + G + VK
Sbjct: 120 NIPIENVRTHQSWSGKYCPHRMLAEGRWGAFIQKVKS 156
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 28.1 bits (61), Expect = 2.7
Identities = 6/72 (8%), Positives = 19/72 (26%)
Query: 74 GMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQVSEN 133
++ L + +++ A + +D I + + L V
Sbjct: 6 AIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLF 65
Query: 134 RHAFHSKYIAEA 145
++ +
Sbjct: 66 GFTGITEEMLAH 77
>d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione
synthetase ATP-binding domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 373
Score = 27.5 bits (61), Expect = 4.3
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 347 EHFLQKI--ESIPRDDEFIALLHEIHN 371
+ +L K D EF L ++
Sbjct: 78 DSYLHKTTEALALSDSEFTGKLWSLYL 104
>d1ulra_ d.58.10.1 (A:) Acylphosphatase {Thermus thermophilus
[TaxId: 274]}
Length = 87
Score = 25.1 bits (55), Expect = 6.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 332 DGRILFPATGTEEAVEHFLQKIESIPR 358
DGR+ A G +EA+E FL ++ PR
Sbjct: 38 DGRVEVVAEGPKEALELFLHHLKQGPR 64
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator
CcpA, C-terminal domain {Bacillus megaterium [TaxId:
1404]}
Length = 275
Score = 26.2 bits (56), Expect = 8.7
Identities = 8/72 (11%), Positives = 27/72 (37%)
Query: 74 GMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQVSEN 133
G++ + + + R + +++I + ++ D H+LN+ + +
Sbjct: 7 GVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFM 66
Query: 134 RHAFHSKYIAEA 145
+++ E
Sbjct: 67 SGNVTEEHVEEL 78
>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate
dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId:
53953]}
Length = 368
Score = 26.6 bits (58), Expect = 8.9
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 31 WYVFSGMGSQWAGMVKGLLHIPDFNGEKRPVWYVFSGMGSQWAG 74
+G+ AG + NG K + +G+ G
Sbjct: 238 GADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKG 281
>d1zc6a2 c.55.1.5 (A:122-292) Probable N-acetylglucosamine kinase
CV2896 {Chromobacterium violaceum [TaxId: 536]}
Length = 171
Score = 25.7 bits (56), Expect = 9.2
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 212 VVIEIAP-HALLQAIIKRAKPGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLL 270
+V+ A A++++A A +I +LP L GLG+ L P Q L
Sbjct: 96 LVLSAARVDPEADALLRQAGEDAWAIARALDPQDELPVALCGGLGQALRDWLPPGFRQRL 155
Query: 271 PPVK 274
+
Sbjct: 156 VAPQ 159
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.409
Gapped
Lambda K H
0.267 0.0400 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,005,457
Number of extensions: 96439
Number of successful extensions: 241
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 16
Length of query: 521
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 432
Effective length of database: 1,185,626
Effective search space: 512190432
Effective search space used: 512190432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)