BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9441
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 282 bits (722), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 178/422 (42%), Positives = 230/422 (54%), Gaps = 22/422 (5%)
Query: 9 KAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSP 68
K G AFHS ++ P L L ++I PKPRS RW+S+SIPE W LA+ S
Sbjct: 673 KEVRTGGIAFHSYFMESIAPTLLRQLRKVILDPKPRSKRWLSTSIPEAQWQGSLARTFSA 732
Query: 69 AYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVS-IGLTKRGAPDL 127
Y VNNL+SPVLF EALQHVP +AVV+EIAPHALLQA++KR+ + + I L K+ D
Sbjct: 733 EYSVNNLVSPVLFQEALQHVPAHAVVVEIAPHALLQAVLKRSLESSCTIIPLMKKDHRDN 792
Query: 128 PAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSVASFAG--K 185
LS +G+L+ AG+ N L PPV+FP RGTP+I ++WDHS W V S A
Sbjct: 793 LEFFLSNVGRLHLAGVSVNPNGLFPPVEFPAPRGTPLISPHIKWDHSQAWDVPSAADFPS 852
Query: 186 GGSRSGECVIDVDLSKEE-DAYLSGHAIDGRILFPATG----TEEAVEHFL-QKIESIPR 239
G S S V D+S E D YL H IDGR+LFP TG T + + L Q +E P
Sbjct: 853 GSSCSSVAVYKFDVSPESPDHYLVDHCIDGRVLFPGTGYLWLTWKTLARALSQNLEETPV 912
Query: 240 DDEFIALLHEIHNTNIAGHPYRGYTVLSDN--SATHELAVSEFELCESGSVAVSGRIRTP 297
E + L H I P G L A+H VS+ +GS+ SG++
Sbjct: 913 VFEDVTL----HQATIL--PKTGTVSLEVRLLEASHAFEVSD----SNGSLIASGKVYQW 962
Query: 298 EDVSKEQLDL-PELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKL 356
E + D + PA S+ LS DVYKDLRLRGYDY F+ V +SD +G G+L
Sbjct: 963 ESPDPKLFDTRAAVDPADSTAEFRLSQGDVYKDLRLRGYDYGPFFQLVLESDLEGNRGRL 1022
Query: 357 DWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKALVETLSGDKKTVPVAM 416
W +W+S++D ML SIL LYLPTR + IDP H+ + TL + V +
Sbjct: 1023 QWNDSWVSFLDAMLHMSILAPGQLGLYLPTRFTSIRIDPVTHRQKLYTLQDTTQAADVVV 1082
Query: 417 YR 418
R
Sbjct: 1083 DR 1084
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 215 RILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHE 274
R+L + T EAV+ L++ RD F+ +L+EI + P+RGY VL + + E
Sbjct: 422 RLLQASGRTLEAVQTLLEQGLRHSRDLAFVGMLNEIAAVSPVAMPFRGYAVLGGEAGSQE 481
Query: 275 L 275
+
Sbjct: 482 V 482
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/303 (42%), Positives = 172/303 (56%), Gaps = 20/303 (6%)
Query: 7 MCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQS 66
K G AFHS ++ P L L ++I PKPRSARW+S+SIPE W + LA+ S
Sbjct: 673 FAKEVRTGGMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTS 732
Query: 67 SPAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRA-KPGAVSIGLTKRGAP 125
S Y+VNNL+SPVLF EAL HVPE+AVV+EIAPHALLQA++KR KP I L K+
Sbjct: 733 SAEYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHR 792
Query: 126 DLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSVAS---F 182
D L+G+G+L+ +G+ N L PPV+FP RGTP+I L++WDHS W V + F
Sbjct: 793 DNLEFFLAGIGRLHLSGIDANPNALFPPVEFPAPRGTPLISPLIKWDHSLAWDVPAAEDF 852
Query: 183 AGKGGSRSGECVIDVDLSKEE-DAYLSGHAIDGRILFPATGTEEAVEHFLQK-----IES 236
GS S + ++D S E D YL H +DGR+LFPATG V L + +E
Sbjct: 853 PNGSGSPSA-AIYNIDTSSESPDHYLVDHTLDGRVLFPATGYLSIVWKTLARALGLGVEQ 911
Query: 237 IPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVSEFELCESGSVAVSGRIRT 296
+P E + L H I P G L A FE+ E+G++ VSG++
Sbjct: 912 LPVVFEDVVL----HQATIL--PKTGTVSLEVRLLE---ASRAFEVSENGNLVVSGKVYQ 962
Query: 297 PED 299
+D
Sbjct: 963 WDD 965
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 115/287 (40%), Gaps = 39/287 (13%)
Query: 1 MLSPQGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGT 60
MLSP+G CKAFD AG+ + RS + K AR + ++I T
Sbjct: 207 MLSPEGTCKAFDTAGNGY-----------CRSEGVVAVLLTKKSLARRVYATILNAGTNT 255
Query: 61 PLAQQSSPAYHVNNLLSPVL--FYEALQHVPENAVVIE-------IAPHALLQAIIK--- 108
++ + ++ ++ Y++ PE+ IE + L I +
Sbjct: 256 DGFKEQGVTFPSGDIQEQLIRSLYQSAGVAPESFEYIEAHGTGTKVGDPQELNGITRALC 315
Query: 109 --RAKPGAVSIGLTKRGAPDLPAHLLSGLGK----LYNAGLQPRLNQLLPPVKFPV---G 159
R +P + + G P+ PA L+ L K L + P L+ P + P G
Sbjct: 316 ATRQEPLLIGSTKSNMGHPE-PASGLAALAKVLLSLEHGLWAPNLHFHSPNPEIPALLDG 374
Query: 160 RGTPMIQSLVEWDHSTEWSVASFAGKGGSRSGECVIDVDLSKEEDAYLSGHAIDGRILFP 219
R + Q L + SF G GGS I + + + + HA R+L
Sbjct: 375 RLQVVDQPLPV--RGGNVGINSF-GFGGS---NVHIILRPNTQPPPAPAPHATLPRLLRA 428
Query: 220 ATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTVL 266
+ T EAV+ L++ +D F+++L++I P+RGY VL
Sbjct: 429 SGRTPEAVQKLLEQGLRHSQDLAFLSMLNDIAAVPATAMPFRGYAVL 475
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|B Chain B, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|C Chain C, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|D Chain D, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
Length = 433
Score = 161 bits (407), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 9 KAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSP 68
K G AFHS ++ P L L ++I PKPRSARW+S+SIPE W + LA+ SS
Sbjct: 275 KEVRTGGMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSSA 334
Query: 69 AYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRA-KPGAVSIGLTKRGAPDL 127
Y+VNNL+SPVLF EAL HVPE+AVV+EIAPHALLQA++KR KP I L K+ D
Sbjct: 335 EYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHRDN 394
Query: 128 PAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMI 165
L+G+G+L+ +G+ N L PPV+FP RGTP+I
Sbjct: 395 LEFFLAGIGRLHLSGIDANPNALFPPVEFPAPRGTPLI 432
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 197 VDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIA 256
VDL E + S R+L + T EAV+ L++ +D F+++L++I
Sbjct: 11 VDLGTENLYFQSM-----RLLRASGRTPEAVQKLLEQGLRHSQDLAFLSMLNDIAAVPAT 65
Query: 257 GHPYRGYTVLSDNSATHEL 275
P+RGY VL E+
Sbjct: 66 AMPFRGYAVLGGERGGPEV 84
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 151 bits (381), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Query: 9 KAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSP 68
K G AFHS ++ P L L ++I PKPRSARW+S+SIPE W + LA+ SS
Sbjct: 275 KEVRTGGMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSSA 334
Query: 69 AYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRA-KPGAVSIGLTKRGAPDL 127
Y+VNNL+SPVLF EAL HVPE+AVV+EIAPHALLQA++KR KP I L K+ D
Sbjct: 335 EYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHRDN 394
Query: 128 PAHLLSGLGKLYNAGLQPRLNQLLPPVKFP 157
L+G+G+L+ +G+ N L PPV+FP
Sbjct: 395 LEFFLAGIGRLHLSGIDANPNALFPPVEFP 424
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 197 VDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIA 256
VDL E + S R+L + T EAV+ L++ +D F+++L++I
Sbjct: 11 VDLGTENLYFQSM-----RLLRASGRTPEAVQKLLEQGLRHSQDLAFLSMLNDIAAVPAT 65
Query: 257 GHPYRGYTVL 266
P+RGY VL
Sbjct: 66 AMPFRGYAVL 75
>pdb|3KG9|A Chain A, Dehydratase Domain From Curk Module Of Curacin Polyketide
Synthase
pdb|3KG9|B Chain B, Dehydratase Domain From Curk Module Of Curacin Polyketide
Synthase
Length = 296
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 22/161 (13%)
Query: 199 LSKEEDAYLSGHAIDGRILFPATGTEEAV----EHFLQKIESIPRDDEFIALLHEIHNTN 254
L+ E AYLS H + ++LFPATG E ++ L E + D I I T+
Sbjct: 31 LTAESPAYLSQHQVFNKVLFPATGYLEIAAAVGKNLLTTGEQVVVSDVTIVRGLVIPETD 90
Query: 255 IAGHPYRGYTVLSDNSATHEL---------AVSEFELCESGSVAVSGRIRTPEDVSKEQL 305
I + L +NS E+ +++ L G + + T + EQ
Sbjct: 91 IKT-VQTVISTLENNSYKLEIFSTSEGDNQQANQWTLHAEGKIFLDSTTNTKAKIDLEQY 149
Query: 306 DLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQ 346
S+++++ Y+ + RG DY +F+G+ Q
Sbjct: 150 QRE------CSQVIDIQQH--YQQFKSRGIDYGNSFQGIKQ 182
>pdb|3KG6|A Chain A, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|B Chain B, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|C Chain C, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|D Chain D, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
Length = 285
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Query: 199 LSKEEDAYLSGHAIDGRILFPATGTEE----AVEHFLQKIESIPRDDEFIALLHEIHNTN 254
+ E YL+ H + G++LFP+TG E A + E + D I I T
Sbjct: 26 IGAESPGYLNHHQVFGKVLFPSTGYLEIAASAGKSLFTSQEQVVVSDVDILQSLVIPETE 85
Query: 255 IAGHPYRGYTVLS---DNSATHEL---AVSEFELCESGSVAVSGRIRT-PEDVSKEQLDL 307
I TV+S +NS E+ + E + + G+I T P S+ ++DL
Sbjct: 86 IKTVQ----TVVSFAENNSYKFEIFSPSEGENQQTPQWVLHAQGKIYTEPTRNSQAKIDL 141
Query: 308 PELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQ 346
E A S+ +E+ + Y++ R +G DY +F+G+ Q
Sbjct: 142 -EKYQAECSQAIEIE--EHYREYRSKGIDYGSSFQGIKQ 177
>pdb|4AMM|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 401
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 16 HAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNL 75
HAFHS +A A LR + R+ P R R ++S++ W A + V L
Sbjct: 275 HAFHSPLMAPAAEALRRAAGRL---PWRRPERPVASTVTGAWW----ADEDPVEVLVRQL 327
Query: 76 LSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVSI 117
PV F EAL + + +++E+ P +L A+ + A AVS+
Sbjct: 328 TGPVRFREALGLL-DADLLVEVGPGRMLSALAEAAGRTAVSL 368
>pdb|4AMN|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
pdb|4AMP|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 16 HAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNL 75
HAFHS +A A LR + R+ P R R ++S++ W A + V L
Sbjct: 278 HAFHSPLMAPAAEALRRAAGRL---PWRRPERPVASTVTGAWW----ADEDPVEVLVRQL 330
Query: 76 LSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVSI 117
PV F EAL + + +++E+ P +L A+ + A AVS+
Sbjct: 331 TGPVRFREALGLL-DADLLVEVGPGRMLSALAEAAGRTAVSL 371
>pdb|4AMO|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 16 HAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNL 75
HAFHS +A A LR + R+ P R R ++S++ W A + V L
Sbjct: 278 HAFHSPLMAPAAEALRRAAGRL---PWRRPERPVASTVTGAWW----ADEDPVEVLVRQL 330
Query: 76 LSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVSI 117
PV F EAL + + +++E+ P +L A+ + A AVS+
Sbjct: 331 TGPVRFREALGLL-DADLLVEVGPGRMLSALAEAAGRTAVSL 371
>pdb|1B9I|A Chain A, Crystal Structure Of 3-Amino-5-Hydroxybenzoic Acid (Ahba)
Synthase
Length = 388
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 24/144 (16%)
Query: 112 PGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEW 171
P AV+ +T R +P H+ AGL ++ L K G P++Q
Sbjct: 116 PEAVAAAVTPRTKVIMPVHM---------AGLMADMDAL---AKISADTGVPLLQDAAH- 162
Query: 172 DHSTEWSVASFAGKGGSRSGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFL 231
H W G R GE S + ++ G ++FP TE+ FL
Sbjct: 163 AHGARWQ--------GKRVGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFL 213
Query: 232 QKIESIPRDDEFIALLHEIHNTNI 255
+ PRDD H+I +N+
Sbjct: 214 RHSCGRPRDDR--RYFHKIAGSNM 235
>pdb|1B9H|A Chain A, Crystal Structure Of 3-Amino-5-Hydroxybenzoic Acid (Ahba)
Synthase
Length = 388
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 24/144 (16%)
Query: 112 PGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEW 171
P AV+ +T R +P H+ AGL ++ L K G P++Q
Sbjct: 116 PEAVAAAVTPRTKVIMPVHM---------AGLMADMDAL---AKISADTGVPLLQDAAH- 162
Query: 172 DHSTEWSVASFAGKGGSRSGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFL 231
H W G R GE S + ++ G ++FP TE+ FL
Sbjct: 163 AHGARWQ--------GKRVGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFL 213
Query: 232 QKIESIPRDDEFIALLHEIHNTNI 255
+ PRDD H+I +N+
Sbjct: 214 RHSCGRPRDDR--RYFHKIAGSNM 235
>pdb|2CDH|4 Chain 4, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|5 Chain 5, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|6 Chain 6, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|7 Chain 7, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|8 Chain 8, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|9 Chain 9, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|M Chain M, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|N Chain N, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|O Chain O, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|P Chain P, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Q Chain Q, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|R Chain R, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 305
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 23/126 (18%)
Query: 4 PQGMCKA--FDVAGHAFHSKYIAEAGPKLRSSLDRIIPA-PK-----PRSARWISSSIPE 55
P+G+ K VAG AFH++++A A KL + + PA PK + R ++S
Sbjct: 176 PEGVRKVVPLKVAG-AFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVAS---- 230
Query: 56 DHWGTPLAQQSSPAYHVNNLLSPVLFYEALQHVPENAV--VIEIAPHALLQAIIKRAKPG 113
GT + + V + +PV + ++ E V +IE+ P L + KRA PG
Sbjct: 231 ---GTEVLDR-----LVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPG 282
Query: 114 AVSIGL 119
++ L
Sbjct: 283 VKTLAL 288
>pdb|2CF2|B Chain B, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|K Chain K, Architecture Of Mammalian Fatty Acid Synthase
Length = 304
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 23/126 (18%)
Query: 4 PQGMCKA--FDVAGHAFHSKYIAEAGPKLRSSLDRIIPA-PK-----PRSARWISSSIPE 55
P+G+ K VAG AFH++++A A KL + + PA PK + R ++S
Sbjct: 175 PEGVRKVVPLKVAG-AFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVAS---- 229
Query: 56 DHWGTPLAQQSSPAYHVNNLLSPVLFYEALQHVPENAV--VIEIAPHALLQAIIKRAKPG 113
GT + + V + +PV + ++ E V +IE+ P L + KRA PG
Sbjct: 230 ---GTEVLDR-----LVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPG 281
Query: 114 AVSIGL 119
++ L
Sbjct: 282 VKTLAL 287
>pdb|1NM2|A Chain A, "malonyl-Coa:acp Transacylase"
Length = 317
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 23/126 (18%)
Query: 4 PQGMCKA--FDVAGHAFHSKYIAEAGPKLRSSLDRIIPA-PK-----PRSARWISSSIPE 55
P+G+ K VAG AFH++++A A KL + + PA PK + R ++S
Sbjct: 186 PEGVRKVVPLKVAG-AFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVAS---- 240
Query: 56 DHWGTPLAQQSSPAYHVNNLLSPVLFYEALQHVPENAV--VIEIAPHALLQAIIKRAKPG 113
GT + + V + +PV + ++ E V +IE+ P L + KRA PG
Sbjct: 241 ---GTEVLDR-----LVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPG 292
Query: 114 AVSIGL 119
++ L
Sbjct: 293 VKTLAL 298
>pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp
pdb|1W7K|A Chain A, E.Coli Folc In Complex With Adp, Without Folate Substrate
Length = 422
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 215 RILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAG 257
R++F A E+ +++++P++ +A++ +H+ +IAG
Sbjct: 298 RVIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAG 340
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,116,500
Number of Sequences: 62578
Number of extensions: 567979
Number of successful extensions: 1699
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1672
Number of HSP's gapped (non-prelim): 26
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)