Query psy9441
Match_columns 418
No_of_seqs 313 out of 1744
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 19:27:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1202|consensus 100.0 3.1E-50 6.8E-55 405.5 29.1 395 1-409 674-1075(2376)
2 COG3321 Polyketide synthase mo 99.9 5.8E-28 1.3E-32 260.5 13.4 313 2-348 706-1031(1061)
3 PF14765 PS-DH: Polyketide syn 99.9 8.6E-26 1.9E-30 214.6 10.3 214 189-407 12-256 (295)
4 PF00698 Acyl_transf_1: Acyl t 99.9 1.2E-25 2.5E-30 215.6 6.5 136 2-145 176-318 (318)
5 TIGR02816 pfaB_fam PfaB family 99.9 6E-23 1.3E-27 205.0 9.6 143 1-153 376-538 (538)
6 TIGR02813 omega_3_PfaA polyket 99.8 2.4E-21 5.2E-26 222.1 11.4 145 1-152 774-925 (2582)
7 smart00827 PKS_AT Acyl transfe 99.7 2.2E-17 4.8E-22 157.1 9.3 116 2-123 177-298 (298)
8 TIGR03131 malonate_mdcH malona 99.7 1.7E-17 3.7E-22 157.6 7.0 109 2-117 171-282 (295)
9 PLN02752 [acyl-carrier protein 99.7 1E-16 2.2E-21 155.3 8.2 99 5-110 232-332 (343)
10 TIGR00128 fabD malonyl CoA-acy 99.7 1.1E-16 2.4E-21 151.6 6.4 101 3-110 183-286 (290)
11 smart00826 PKS_DH PKS_DH. 99.5 7.7E-13 1.7E-17 114.0 15.3 145 191-344 14-167 (167)
12 COG0331 FabD (acyl-carrier-pro 99.5 2E-14 4.3E-19 134.9 4.4 101 3-110 186-289 (310)
13 KOG2926|consensus 99.4 1.6E-13 3.4E-18 125.5 6.0 98 7-111 258-360 (386)
14 TIGR02813 omega_3_PfaA polyket 98.9 4E-09 8.7E-14 122.8 12.2 196 194-397 2298-2529(2582)
15 cd01288 FabZ FabZ is a 17kD be 92.0 1.1 2.5E-05 36.3 8.5 94 194-296 23-128 (131)
16 TIGR01750 fabZ beta-hydroxyacy 91.8 1.4 3.1E-05 36.4 9.0 94 194-296 31-138 (140)
17 cd00493 FabA_FabZ FabA/Z, beta 91.5 1.9 4.1E-05 34.9 9.3 59 194-258 22-93 (131)
18 PRK00006 fabZ (3R)-hydroxymyri 87.6 2 4.4E-05 35.8 6.7 52 202-258 45-106 (147)
19 PF07977 FabA: FabA-like domai 85.7 3.2 7E-05 34.2 6.8 59 194-258 28-101 (138)
20 COG0764 FabA 3-hydroxymyristoy 79.3 17 0.00038 30.4 8.7 52 202-258 43-104 (147)
21 TIGR01749 fabA beta-hydroxyacy 62.8 50 0.0011 28.4 8.1 60 193-258 52-119 (169)
22 cd01287 FabA FabA, beta-hydrox 61.2 61 0.0013 27.2 8.2 60 193-258 29-103 (150)
23 PRK05174 3-hydroxydecanoyl-(ac 55.6 1.2E+02 0.0025 26.2 9.2 60 193-258 55-122 (172)
24 PF09419 PGP_phosphatase: Mito 44.2 24 0.00051 30.4 3.0 55 1-56 36-90 (168)
25 PRK13188 bifunctional UDP-3-O- 29.9 2.4E+02 0.0051 28.6 7.9 57 196-258 353-420 (464)
26 cd01289 FabA_like Domain of un 22.6 4.3E+02 0.0092 21.5 9.5 38 215-256 44-94 (138)
No 1
>KOG1202|consensus
Probab=100.00 E-value=3.1e-50 Score=405.52 Aligned_cols=395 Identities=52% Similarity=0.867 Sum_probs=350.5
Q ss_pred CCCCCceeeEeecCCcccCCcchhhhHHHHHHHHhhhCCCCCCCCCeEEEccCCCCCCCCccccCCCchhhHhhhccccc
Q psy9441 1 MLSPQGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVL 80 (418)
Q Consensus 1 l~~~gi~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~v~~~~~~~~~~~~~~~~~yw~~nl~~pV~ 80 (418)
|+++|||++.++.|++|||||+|+.+.+++++.|+.+.+.+|+.+..|+||...+..|.++.....+++|.++|+.+||+
T Consensus 674 L~~~gvFak~V~t~G~aFHS~~m~a~~p~l~~~l~k~i~epK~rsarWlSTSipEa~W~s~la~tsSA~Y~vnNl~SPVL 753 (2376)
T KOG1202|consen 674 LRAEGVFAKEVRTGGYAFHSPYMEAAAPPLRQSLEKVIPEPKPRSARWLSTSIPEAQWHSSLARTSSAEYHVNNLVSPVL 753 (2376)
T ss_pred hhhcCeeeeEecCCCccccCHHHHhhChHHHHHHHHhcCCCCCcccchhhccCChhhhcChhhhhcchhhhhhccccHHH
Confidence 67899999999998999999999999999999999999988889999999999998898766777899999999999999
Q ss_pred HHHHHhhCCCCcEEEEeCCchhhHHHHHHc-CCCcceeeccCCCCCChHHHHHHHHHHHHhcCCCCCccccCCCCccCCC
Q psy9441 81 FYEALQHVPENAVVIEIAPHALLQAIIKRA-KPGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVG 159 (418)
Q Consensus 81 f~~ai~~~~~~~~~iEigp~~~L~~~~~~~-~~~~~~~~~l~r~~~~~~~~ll~~l~~L~~~G~~vdw~~l~~~~~~~~~ 159 (418)
|.+|++.+.++.+.|||.||..|+..+|+. .+++++++.++|++++..+.+|..+|+||.+|.+++...++++.++|++
T Consensus 754 F~eAlq~vP~nAv~vEiAPH~LlqAiLkRsL~p~~t~v~Lmkr~h~~NlEffL~~lgrly~aG~~~qi~~l~p~i~ypv~ 833 (2376)
T KOG1202|consen 754 FHEALQHVPENAVVVEIAPHGLLQAILKRSLKPSCTNVSLMKRGHRNNLEFFLAGLGRLYAAGIQPQILALFPPIEYPVP 833 (2376)
T ss_pred HHHHHHhCcccceEEEecchHHHHHHHHhhcCCccceehhhcCcccccHHHHHHHHHHHHHccCCccceeccCCCcccCC
Confidence 999999999999999999999999999988 8899999999999888999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCCCCCcccccccCCCCCCCCcceEEEeecCcccccccCceeCCEEEeecccHHHHHHHHHHHhh----
Q psy9441 160 RGTPMIQSLVEWDHSTEWSVASFAGKGGSRSGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIE---- 235 (418)
Q Consensus 160 ~~~~v~LP~Ypf~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~dH~v~g~~v~P~a~yle~a~~A~~~~~---- 235 (418)
++++..-|..-|||+.-|..+.+.... .++..++..+++.+++.||.||.|+|+++||+++|+.+|+....+..
T Consensus 834 rGTPmi~~lv~WDHtq~W~~~~f~~gs--~s~~a~~niD~~~edd~yL~~HtiDGRvLfPaTGymtlaW~tlak~qGldy 911 (2376)
T KOG1202|consen 834 RGTPMIGPLVKWDHTQKWLVPKFPGGS--GSSAAIYNIDLSKEDDHYLADHTIDGRVLFPATGYMTLAWKTLAKPQGLDY 911 (2376)
T ss_pred CCCcCcccccCccccccccccccCCCC--CccceEEEccCCccccceeccceecceEEeccccchhHHHHHHhhhccCCc
Confidence 999999999999999999998876654 33677899999999999999999999999999999999999888765
Q ss_pred -CCCeeeeccccccceecccccCCCCC-ceEEEeccCCcceeeEEEEEEEeCCeEEEEEEEEecCCCCCCCCCCCCCCcc
Q psy9441 236 -SIPRDDEFIALLHEIHNTNIAGHPYR-GYTVLSDNSATHELAVSEFELCESGSVAVSGRIRTPEDVSKEQLDLPELTPA 313 (418)
Q Consensus 236 -~~~~~l~dv~~~~~~~~pl~~~~~~~-~~e~~~~~~~~~~~~~~~f~v~s~~~~h~~g~i~~~~~~~~~~~~~~~~~~~ 313 (418)
..++.++|+ .|+++-+++.+.. .+++.+-. +...|+|.++..+..+|+|......++..++..+ .+
T Consensus 912 ~ktPVvfEdv----v~h~ATIL~k~~vvkl~v~~~~------gs~aFEi~e~~~l~~SGki~i~ed~~~~~~~l~e--~~ 979 (2376)
T KOG1202|consen 912 EKTPVVFEDV----VFHRATILPKTGVVKLEVNLFP------GSGAFEICENGSLVVSGKIYIPEDPDPELLDLEE--SP 979 (2376)
T ss_pred ccCceeeeee----eeeeeEeecCCceEEEEEEEcC------CCcceEEecCCcEEEeeeEeccCCCchhhccccc--CC
Confidence 368899999 9999999987421 22221111 5679999999999999999987766655444433 22
Q ss_pred ccccccccChhHHHHHHHhcCCccCccCccccccccCCcEEEEecCCCchhHHHHHHHHHHhhhccCCccccceeeEEEE
Q psy9441 314 ISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKLDWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCI 393 (418)
Q Consensus 314 ~~~~~~~~~~~~~Y~~~~~~G~~yG~~Fq~i~~~~~~~~~a~i~~~~~hP~lLD~~lQ~~~~~~~~~~~~lP~~i~~i~~ 393 (418)
.....+.++.++.|+.|+-+|++||+.||+|-+....+..|++.|.++|-.++|.++|..++......+|+|.+|+++.|
T Consensus 980 ~~~~a~eL~t~dvYKElrLRGYdYg~~FqGI~~s~~s~~tG~L~W~dNWvsFmDtmLQ~siLs~~~~~LylPTrv~~~~I 1059 (2376)
T KOG1202|consen 980 TSAPAEELATADVYKELRLRGYDYGGHFQGILESDLSGDTGRLQWKDNWVSFMDTMLQFSILSSAKRELYLPTRVERAHI 1059 (2376)
T ss_pred CcchhhhhhHHHHHHHHHhcccccchhhhhhhhhccccccceEEEeccHHHHHHHHHHHHHHhhcccceecccceeeeee
Confidence 23345588999999999999999999999998887777889999999999999999999999888899999999999999
Q ss_pred cchhhHHHHhhcCCCc
Q psy9441 394 DPAKHKALVETLSGDK 409 (418)
Q Consensus 394 ~~~~~~~~~~~~~~~~ 409 (418)
.+..|.+.....+++.
T Consensus 1060 dP~kH~e~~~~~~~~~ 1075 (2376)
T KOG1202|consen 1060 DPAKHLELLYTLQDKA 1075 (2376)
T ss_pred ChHHHHHHHHhhcchh
Confidence 9999999988876653
No 2
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=5.8e-28 Score=260.46 Aligned_cols=313 Identities=19% Similarity=0.229 Sum_probs=230.0
Q ss_pred CCCCceeeEeecCCcccCCcchhhhHHHHHHHHhhhCCCCCCCCCeEEEccCCCCCCCCccccCCCchhhHhhhcccccH
Q psy9441 2 LSPQGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLF 81 (418)
Q Consensus 2 ~~~gi~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~v~~~~~~~~~~~~~~~~~yw~~nl~~pV~f 81 (418)
.++|+++++++| +|||||+.|+|+.++|.+.++++.++. |++|++||+++... .....+++||.+|+|+||+|
T Consensus 706 ~~~~~~~~~~~v-~~a~hs~~m~~~~~~~~~~la~i~~~~--p~~p~~S~~~~~~~----~~~~~d~~yw~~~~r~~v~f 778 (1061)
T COG3321 706 QAQGVRARRLAV-SHAFHSPLMDPILDEFAAALADLAPRP--PQIPLISNVTGDLA----GEPGGDAQYWVQHLRQPVRF 778 (1061)
T ss_pred hccCcccceeee-eeccccHHHHHHHHHHHHHHhhcccCC--CCcceeeeeecccc----CCcccCHHHHHHHHHhhccH
Confidence 457899999999 999999999999999999999999988 99999999999974 35666899999999999999
Q ss_pred HHHHhhCCCC--cEEEEeCCchhhHHHHHHcC-CCcceeeccCCCCCChHHHHHHHHHHHHhcCCCCCccccCCCCccCC
Q psy9441 82 YEALQHVPEN--AVVIEIAPHALLQAIIKRAK-PGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPV 158 (418)
Q Consensus 82 ~~ai~~~~~~--~~~iEigp~~~L~~~~~~~~-~~~~~~~~l~r~~~~~~~~ll~~l~~L~~~G~~vdw~~l~~~~~~~~ 158 (418)
.++++.+.+. .+|+|+|||+.|...++++- ..+..+++++|+ .++...++..+++||..|.++||..++...
T Consensus 779 ~~~i~~~~~~~~~~f~E~~p~p~l~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~l~~~g~~~dw~~~~~~~---- 853 (1061)
T COG3321 779 ADAIAAALADGARTFIEVGPGPVLTESIKQTLRDAILSIATLRRD-APELLSFLAALAQLFVAGVAVDWSPLVYGP---- 853 (1061)
T ss_pred HHHHHHHHhcccceEEEecCCHhHHHHHHHHhhhhhcchhhhccc-ccchhHHHHHHHHHHhcCCCcCcHhhhcCC----
Confidence 9999999873 89999999999999999992 227788899999 799999999999999999999999988763
Q ss_pred CCCCcccCCCCCCCCCCCcccccc---cCC-------CCCCCCcceEEEeecCcccccccCceeCCEEEeecccHHHHHH
Q psy9441 159 GRGTPMIQSLVEWDHSTEWSVASF---AGK-------GGSRSGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVE 228 (418)
Q Consensus 159 ~~~~~v~LP~Ypf~~~~~W~~~~~---~~~-------~~~~~~~~~~~~~l~~~~~~~L~dH~v~g~~v~P~a~yle~a~ 228 (418)
..+.+.||+|||+|.+||++... ..+ ..+..+...|+..+.....+|+.+|.+....++|++++.++++
T Consensus 854 -~~~~v~lp~~~~q~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1061)
T COG3321 854 -DGRLVELPTYPFQRQRFWLDPEALGVASHPLLGAVLGRPSSGEVVLQGSLDLLAVPWLADHDVRNVAALPGAAYVELAL 932 (1061)
T ss_pred -ccccccCCCCCceeccccccccccccccccccchhccCCCCccccccccccccccchhhhchhccccccccchhhhhhh
Confidence 24479999999999999999751 111 1234556668888888899999999999999999999999999
Q ss_pred HHHHHhhCCCeeeeccccccceecccccCCCCCceEEEeccCCcceeeEEEEEEEeCCeEEEEEEEEecCCCCCCCCCCC
Q psy9441 229 HFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVSEFELCESGSVAVSGRIRTPEDVSKEQLDLP 308 (418)
Q Consensus 229 ~A~~~~~~~~~~l~dv~~~~~~~~pl~~~~~~~~~e~~~~~~~~~~~~~~~f~v~s~~~~h~~g~i~~~~~~~~~~~~~~ 308 (418)
.++...... ..+..+ .+..+..+...- .... ..........+ ..|..|+.+.+...... ... ...
T Consensus 933 ~~~~~~~~~-~~~~~~----~~~~~~~~~~~~---~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~-~~~ 997 (1061)
T COG3321 933 AAADEVGGG-LVAKPL----DVESRLELAQQV---DISI--AAPIQPQVLYF---TAWLRHATAFLEASSAR-LPG-DIE 997 (1061)
T ss_pred hhhhhcccc-ccccee----ecccccchhhhh---hhhh--cccccchhhhh---hHHHHHHHHHHhccccc-ccc-chh
Confidence 999875422 334444 444444333210 0000 00000000111 12333333322221111 000 000
Q ss_pred CCCccccccccccChhHHHHHHHhcCCccCccCccccccc
Q psy9441 309 ELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSD 348 (418)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~Y~~~~~~G~~yG~~Fq~i~~~~ 348 (418)
........... .+|..+. .|.+|++.|+++..++
T Consensus 998 ---~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 1031 (1061)
T COG3321 998 ---LLAAALAKDVD--DLYGLLA-SGGEYGPAFIGLIGIG 1031 (1061)
T ss_pred ---hccccccCcch--hhhhhcc-cccccchhhhhhheeh
Confidence 00111222222 8999999 9999999999998876
No 3
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=99.93 E-value=8.6e-26 Score=214.58 Aligned_cols=214 Identities=19% Similarity=0.245 Sum_probs=156.0
Q ss_pred CCCcceEEEeecCcccccccCceeCCEEEeecccHHHHHHHHHHHhh-CCCeeeeccccccceecccccCCCCCceEEE-
Q psy9441 189 RSGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIE-SIPRDDEFIALLHEIHNTNIAGHPYRGYTVL- 266 (418)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~L~dH~v~g~~v~P~a~yle~a~~A~~~~~-~~~~~l~dv~~~~~~~~pl~~~~~~~~~e~~- 266 (418)
..+...|+.+++.+++|||+||+|+|++|+||++|+||+++|+.... ...+.|+|+ .|.+|++++++. ..++.
T Consensus 12 ~~~~~~~~~~l~~~~~~~l~dH~v~g~~i~Pga~~le~~~~Aa~~~~~~~~~~l~~~----~~~~pl~l~~~~-~~~l~~ 86 (295)
T PF14765_consen 12 SPGSVVFESRLSPDEHPFLRDHRVQGQPILPGAAYLEMALEAARQLSPSSVVELRDL----RFHRPLVLDEGE-PRELRV 86 (295)
T ss_dssp TTSEEEEEEEECTTTTGGGGGEEETTEEEE-HHHHHHHHHHHHHHHTCSSEEEEEEE----EE-S-EEE-TTT-EEEEEE
T ss_pred CCCeEEEEEEECCccCchhhcCEECCEeeehhHHHHHHHHHHHHHhhCcccceEEEe----EecccEEecCCC-cEEEEE
Confidence 45677899999999999999999999999999999999999999887 347899999 999999998654 44443
Q ss_pred -eccCCcce-eeEEEEEEEe------CCeEEEEEEEEecCCCC--CCCCCCCCC--CccccccccccChhHHHHHHHhcC
Q psy9441 267 -SDNSATHE-LAVSEFELCE------SGSVAVSGRIRTPEDVS--KEQLDLPEL--TPAISSEMLELSSADVYKDLRLRG 334 (418)
Q Consensus 267 -~~~~~~~~-~~~~~f~v~s------~~~~h~~g~i~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~Y~~~~~~G 334 (418)
.+....-. ...+.|+|+| .|..||+|++....... ....+.... ..........++.+++|+.+.+.|
T Consensus 87 ~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~h~~g~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Y~~~~~~g 166 (295)
T PF14765_consen 87 ELDPEEDGSGSMEWRFEIFSRNKDDSGWTLHASGQVSLDKDPPPEPPPLDLESLKARCPEPPDGEPLDIEEFYERLAERG 166 (295)
T ss_dssp EEEEETTTTEEEEEEEEEEEEESTCCGEEEEEEEEEEEESSHC-SGGBGBHHHHHHHHHEECCCEEEHHHHHHHHHHHTT
T ss_pred EEEEccCCCCccceEEEEEEecCCCcceEEeeeeEEEeeecccccccccccccccccccccccccccchHHHHHhHHhcC
Confidence 32211101 1346899987 27999999998765432 111111100 000111233578899999999999
Q ss_pred CccCccCccccccccCCcEEEEecCC----------CchhHHHHHHHHHHhhh----ccCCccccceeeEEEEcc---hh
Q psy9441 335 YDYSGAFRGVSQSDNKGFTGKLDWTG----------NWISYIDTMLQFSILGI----NTRELYLPTRMQRVCIDP---AK 397 (418)
Q Consensus 335 ~~yG~~Fq~i~~~~~~~~~a~i~~~~----------~hP~lLD~~lQ~~~~~~----~~~~~~lP~~i~~i~~~~---~~ 397 (418)
+.|||.||+|++++.++..+++.+++ .||++||+++|+..+++ .....++|++|+++.+++ +.
T Consensus 167 l~~g~~fr~i~~i~~~~~~~~~~~~~~~~~~~~~~~l~P~llD~~lq~~~~~~~~~~~~~~~~lP~~i~~~~~~~~~~~~ 246 (295)
T PF14765_consen 167 LFYGPRFRGIESIRRGEALAEVRLPDDPASDPDPFVLHPALLDAALQAAGLALWEDDDRGRVFLPVSIERIRIFRAPPPP 246 (295)
T ss_dssp EEEHGGGHHEEEEEESEEEEEEECGTTTGGGGGGSSS-HHHHHHHHHGHGCCHTSTTTTTSEEEEEEEEEEEESSS--SS
T ss_pred CccCCcccchhhhhhccceEEEEEEeeccCCCCceeECHHHHHHHHHHHHHHhccccCCCCEEcccEeCEEEEEeccCCC
Confidence 99999999999999966788888763 38999999999664432 367899999999999996 66
Q ss_pred hHHHHhhcCC
Q psy9441 398 HKALVETLSG 407 (418)
Q Consensus 398 ~~~~~~~~~~ 407 (418)
...+++++..
T Consensus 247 ~~~~~~~~~~ 256 (295)
T PF14765_consen 247 GDRLYVYARL 256 (295)
T ss_dssp TSEEEEEEEE
T ss_pred CCEEEEEEEE
Confidence 7777777653
No 4
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=99.92 E-value=1.2e-25 Score=215.60 Aligned_cols=136 Identities=29% Similarity=0.350 Sum_probs=123.5
Q ss_pred CCCCceeeEeecCCcccCCcchhhhHHHHHHHHhhhCCCCCCCCCeEEEccCCCCCCCCccccCCCchhhHhhhcccccH
Q psy9441 2 LSPQGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLF 81 (418)
Q Consensus 2 ~~~gi~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~v~~~~~~~~~~~~~~~~~yw~~nl~~pV~f 81 (418)
+++|++++.|+| ++|||||+|+|+.++|++.++++.+.+ |++|++||++|+.+ ......++||++|+++||+|
T Consensus 176 ~~~~~~~~~l~v-~~afHs~~m~~~~~~~~~~l~~~~~~~--p~ip~~S~~~g~~~----~~~~~~~~~~~~~l~~pV~f 248 (318)
T PF00698_consen 176 KAEGIKAKRLPV-SYAFHSPLMEPAADEFREALESIEFRP--PKIPVYSNVTGRPY----DDPELIAEYWARQLRSPVRF 248 (318)
T ss_dssp HHTTSEEEEESS-SSETTSGGGHHHHHHHHHHHHTSCSCC--CSSEEEETTTSSBE----HSHHHHHHHHHHHHHSHEEH
T ss_pred hccceeEEEeee-eccccCchhhhhHHHHHhhhhcccccc--ccccceeecccccc----cccccchhHHHhccCCcCCh
Confidence 467899999999 999999999999999999999999877 99999999999987 23445789999999999999
Q ss_pred HHHHhhCCC--CcEEEEeCCchhhHHHHHHc-C----CCcceeeccCCCCCChHHHHHHHHHHHHhcCCCC
Q psy9441 82 YEALQHVPE--NAVVIEIAPHALLQAIIKRA-K----PGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQP 145 (418)
Q Consensus 82 ~~ai~~~~~--~~~~iEigp~~~L~~~~~~~-~----~~~~~~~~l~r~~~~~~~~ll~~l~~L~~~G~~v 145 (418)
.++|+.+.+ .++|||||||++|+++++++ . .++.++++++|+ .++..++++++++||++|++|
T Consensus 249 ~~~v~~l~~~g~~~fiEiGP~~~L~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~~~~~~l~~l~~~Gv~~ 318 (318)
T PF00698_consen 249 REAVEALYEDGVRVFIEIGPGSVLTSLVKRILKSENGSDATLIPSLRRG-HDDLDTFLQALAQLFVSGVAV 318 (318)
T ss_dssp HHHHHHHHHTTEEEEEEESSSSHHHHHHHHHSTSETTTTSEEEESEBTT-BSCHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHhcCCCEEEEeCchHHHHHHHHHHHhhccCCCeEEEeccCCC-CChHHHHHHHHHHHHHcCCCC
Confidence 999999954 48999999999999999998 3 578999999999 799999999999999999863
No 5
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=99.88 E-value=6e-23 Score=204.97 Aligned_cols=143 Identities=14% Similarity=0.195 Sum_probs=119.3
Q ss_pred CCCCCceeeEeecCCcc-----cCCcchhhhHHHHHHHHhhhCCCCCCCCCeEEEccC--CCCCCCC-ccccCCCchhhH
Q psy9441 1 MLSPQGMCKAFDVAGHA-----FHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSI--PEDHWGT-PLAQQSSPAYHV 72 (418)
Q Consensus 1 l~~~gi~~~~L~v~~~a-----fHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~v~--~~~~~~~-~~~~~~~~~yw~ 72 (418)
|+++||++++|.+ .|+ |||++|+++.++|...+ + |.+|+|||++ |...-.. ..+....++||+
T Consensus 376 L~~~Gi~~r~L~a-~HA~pam~~HS~~me~~l~~f~~~l------~--p~ip~iSnvt~tG~~~~~~~~~d~~~ia~yw~ 446 (538)
T TIGR02816 376 LGKRGIAANRVTA-MHTQPALQEHQNVMDFYLQPLCAEL------P--MDIKFISAADLLAKNQNSEQAIDSQSIANSIA 446 (538)
T ss_pred HHhCCeeeeeccc-cccCcccccccHHHHHHHHHHHhhc------c--cCCeeeecccccCcccCCCcCCCHHHHHHHHH
Confidence 4678999999999 998 99999999999998876 4 8999999994 5432000 001122468999
Q ss_pred hhhcccccHHHHHhhCCC--CcEEEEeCCchhhHHHHHHc-C-C--C------cceeeccCCCCCChHHHHHHHHHHHHh
Q psy9441 73 NNLLSPVLFYEALQHVPE--NAVVIEIAPHALLQAIIKRA-K-P--G------AVSIGLTKRGAPDLPAHLLSGLGKLYN 140 (418)
Q Consensus 73 ~nl~~pV~f~~ai~~~~~--~~~~iEigp~~~L~~~~~~~-~-~--~------~~~~~~l~r~~~~~~~~ll~~l~~L~~ 140 (418)
+|+++||+|.++|+++.+ .++||||||+++|+++++++ . . . +.++++++|+ .++..+++++||+||+
T Consensus 447 ~ql~~PVrF~~~I~~L~~~Gv~~FVEIGPg~vLs~lv~~~l~~~~~~~~~~~~~~~l~sl~r~-~~d~~~ll~aLA~L~~ 525 (538)
T TIGR02816 447 DTFCQTLDFTALIHHAQEQGAKLFVEIGADRQNCTLIDKINKQDGASSEQHQPCCTVAANAKG-GEDITSLIKAIAQLIS 525 (538)
T ss_pred HcCCCccCHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHHhhcccccccccccceEeccCCCC-CchHHHHHHHHHHHHH
Confidence 999999999999999987 48999999999999999988 2 1 1 3688999999 7999999999999999
Q ss_pred cCCCCCccccCCC
Q psy9441 141 AGLQPRLNQLLPP 153 (418)
Q Consensus 141 ~G~~vdw~~l~~~ 153 (418)
+|++|||..++++
T Consensus 526 ~Gv~vdW~~l~~g 538 (538)
T TIGR02816 526 HQIPLSLQPFIDG 538 (538)
T ss_pred CCCCCCchhcCCC
Confidence 9999999998753
No 6
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=99.85 E-value=2.4e-21 Score=222.08 Aligned_cols=145 Identities=18% Similarity=0.189 Sum_probs=125.1
Q ss_pred CCCCCceeeEeecCCcccCCcchhhhHHHHHHHHhhhCCCCCCCCCeEEEccCCCCCCCCccccCCCchhhHhhhccccc
Q psy9441 1 MLSPQGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVL 80 (418)
Q Consensus 1 l~~~gi~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~v~~~~~~~~~~~~~~~~~yw~~nl~~pV~ 80 (418)
|+++|+++++|+| ++||||++|+++.++|++.|+++.++. |++|+|||+||+.+.. .....++||++|+++||+
T Consensus 774 L~~~Gi~a~~L~V-s~AFHSplm~~a~~~f~~~L~~i~~~~--P~ipv~SnvtG~~~~~---~~~~i~~~~~~ql~~PV~ 847 (2582)
T TIGR02813 774 LKEKGFKAIPLPV-SGAFHTPLVAHAQKPFSAAIDKAKFNT--PLVPLYSNGTGKLHSN---DAAAIKKALKNHMLQSVH 847 (2582)
T ss_pred HHhCCCeEEECCC-CCCcCcHHHHHHHHHHHHHHhhCCCCC--CCceEEECCCCeEecC---chhhHHHHHHHHhhCeec
Confidence 4678999999999 999999999999999999999999987 9999999999997621 223346899999999999
Q ss_pred HHHHHhhCCC--CcEEEEeCCchhhHHHHHHc--CC--Ccceeecc-CCCCCChHHHHHHHHHHHHhcCCCCCccccCC
Q psy9441 81 FYEALQHVPE--NAVVIEIAPHALLQAIIKRA--KP--GAVSIGLT-KRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLP 152 (418)
Q Consensus 81 f~~ai~~~~~--~~~~iEigp~~~L~~~~~~~--~~--~~~~~~~l-~r~~~~~~~~ll~~l~~L~~~G~~vdw~~l~~ 152 (418)
|.++|++|.+ .++|||+|||++|+++++++ +. ....++.. +++ .++..+|++++++||+.|+++||-..+.
T Consensus 848 F~~aIe~l~~~G~~~FVEiGPg~vLt~lv~~il~~~~~~~~~v~~~~~~~-~~~~~~l~~a~~~L~~~G~~v~~~~~~~ 925 (2582)
T TIGR02813 848 FSEQLEAMYAAGARVFVEFGPKNILQKLVENTLKDKENELCAISINPNPK-GDSDMQLRQAAVQLAVLGLELTEIDPYQ 925 (2582)
T ss_pred HHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHHhhccCCCeeEEeeccCCC-CCHHHHHHHHHHHHHHCCCCCCCccccc
Confidence 9999999986 47999999999999999999 22 33355544 566 6889999999999999999999877654
No 7
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=99.71 E-value=2.2e-17 Score=157.07 Aligned_cols=116 Identities=29% Similarity=0.399 Sum_probs=100.1
Q ss_pred CCCCceeeEeecCCcccCCcchhhhHHHHHHHHhhhCCCCCCCCCeEEEccCCCCCCCCccccCCCchhhHhhhcccccH
Q psy9441 2 LSPQGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLF 81 (418)
Q Consensus 2 ~~~gi~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~v~~~~~~~~~~~~~~~~~yw~~nl~~pV~f 81 (418)
+++|+++++|+| ++||||++|+++.++|.+.++.+.+.+ |++|+|||++|+.+. .....+++||++|+++||+|
T Consensus 177 ~~~~~~~~~L~v-~~~fHs~~~~~~~~~~~~~l~~~~~~~--~~~pv~S~~~g~~~~---~~~~~~~~~l~~~l~~pV~~ 250 (298)
T smart00827 177 EARGIRARRLKV-DHAFHSPHMDPILDEFREALAGITPRP--PRIPFVSTVTGELID---GAELDDAEYWVRNLREPVRF 250 (298)
T ss_pred HHCCceEEECCC-CCCCchHHHHHHHHHHHHHHhhCCCCC--CCCcEEeCCCCcccC---CCCCCCHHHHHHHhhccEeH
Confidence 457899999999 999999999999999999999998876 999999999999872 13344599999999999999
Q ss_pred HHHHhhCCC---CcEEEEeCCchhhHHHHHHc-C--CCcceeeccCCC
Q psy9441 82 YEALQHVPE---NAVVIEIAPHALLQAIIKRA-K--PGAVSIGLTKRG 123 (418)
Q Consensus 82 ~~ai~~~~~---~~~~iEigp~~~L~~~~~~~-~--~~~~~~~~l~r~ 123 (418)
.++++.+.+ ..+|||+||+++|+++++++ . ....+.++++|+
T Consensus 251 ~~~i~~l~~~~g~~~~ie~Gp~~~l~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
T smart00827 251 ADAVRALLAEQGVTVFLEVGPHPVLTGPIKQTLPAAGGAVVVPSLRRG 298 (298)
T ss_pred HHHHHHHHHcCCCcEEEEeCCcHHHHHHHHHHHhccCCceEEeeccCC
Confidence 999999984 37999999999999999998 2 224677777664
No 8
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=99.70 E-value=1.7e-17 Score=157.57 Aligned_cols=109 Identities=18% Similarity=0.194 Sum_probs=94.2
Q ss_pred CCCCc-eeeEeecCCcccCCcchhhhHHHHHHHHhhhCCCCCCCCCeEEEccCCCCCCCCccccCCCchhhHhhhccccc
Q psy9441 2 LSPQG-MCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVL 80 (418)
Q Consensus 2 ~~~gi-~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~v~~~~~~~~~~~~~~~~~yw~~nl~~pV~ 80 (418)
+++|+ ++++|+| ++||||++|+++.++|.+.++.+.+.+ |++|+||+++|+.+ ......++||.+|+++||+
T Consensus 171 ~~~g~~~~~~l~v-~~afHs~~~~~~~~~~~~~l~~~~~~~--~~ip~~S~~~g~~~----~~~~~~~~~~~~~l~~pV~ 243 (295)
T TIGR03131 171 RAAGASRAKRLAV-RVPSHTPLLAKAAEQFAEALAEIPLAA--PRLPYLSGIDARLV----RDAAQIRDDLARQIATPVD 243 (295)
T ss_pred HhcCCceEEECCC-CCCcccHHHHHHHHHHHHHHhcCCCCC--CCceEEECCCCeec----CCHHHHHHHHHHHhcCCCc
Confidence 45677 9999999 999999999999999999999998877 99999999999976 1233457999999999999
Q ss_pred HHHHHhhCCC--CcEEEEeCCchhhHHHHHHcCCCccee
Q psy9441 81 FYEALQHVPE--NAVVIEIAPHALLQAIIKRAKPGAVSI 117 (418)
Q Consensus 81 f~~ai~~~~~--~~~~iEigp~~~L~~~~~~~~~~~~~~ 117 (418)
|.++++.+.+ .++||||||+++|+++++++..+...+
T Consensus 244 ~~~~i~~l~~~g~~~~veiGp~~~l~~~~~~~~~~~~~~ 282 (295)
T TIGR03131 244 WHDCMQAAYERGARLVIELGPGDVLTKLANEAFPELPAR 282 (295)
T ss_pred HHHHHHHHHHcCCCEEEEeCChHHHHHHHHHhcCCCcEE
Confidence 9999999976 489999999999999999883333333
No 9
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=99.67 E-value=1e-16 Score=155.26 Aligned_cols=99 Identities=20% Similarity=0.265 Sum_probs=90.0
Q ss_pred CceeeEeecCCcccCCcchhhhHHHHHHHHhhhCCCCCCCCCeEEEccCCCCCCCCccccCCCchhhHhhhcccccHHHH
Q psy9441 5 QGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLFYEA 84 (418)
Q Consensus 5 gi~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~v~~~~~~~~~~~~~~~~~yw~~nl~~pV~f~~a 84 (418)
++++++|+| ++|||||+|+|+.++|.+.++.+.+++ |++|+|||++|+.+ ......++||.+|+++||+|.++
T Consensus 232 ~~~~~~L~v-~~pfHsp~m~~~~~~l~~~l~~~~~~~--p~ipviS~~tg~~~----~~~~~~~~~l~~~l~~PV~~~~~ 304 (343)
T PLN02752 232 ARMTVRLAV-AGAFHTSFMEPAVDALEAALAAVEIRT--PRIPVISNVDAQPH----SDPATIKKILARQVTSPVQWETT 304 (343)
T ss_pred CceEEECCC-CCCcchHHHHHHHHHHHHHHhcCCCCC--CCceEEEcCCCCcc----CChHHHHHHHHHHCcCCEEHHHH
Confidence 468899999 999999999999999999999999987 99999999999987 23344679999999999999999
Q ss_pred HhhCCC--CcEEEEeCCchhhHHHHHHc
Q psy9441 85 LQHVPE--NAVVIEIAPHALLQAIIKRA 110 (418)
Q Consensus 85 i~~~~~--~~~~iEigp~~~L~~~~~~~ 110 (418)
|+.+.+ .+.|||+||+++|+++++++
T Consensus 305 i~~l~~~g~~~~iEiGP~~~L~~l~~~~ 332 (343)
T PLN02752 305 VKTLLEKGLEKSYELGPGKVIAGIVKRV 332 (343)
T ss_pred HHHHHHCCCCEEEEeCCcHHHHHHHHHh
Confidence 999887 37999999999999999988
No 10
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=99.65 E-value=1.1e-16 Score=151.64 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=89.7
Q ss_pred CCCc-eeeEeecCCcccCCcchhhhHHHHHHHHhhhCCCCCCCCCeEEEccCCCCCCCCccccCCCchhhHhhhcccccH
Q psy9441 3 SPQG-MCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLF 81 (418)
Q Consensus 3 ~~gi-~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~v~~~~~~~~~~~~~~~~~yw~~nl~~pV~f 81 (418)
+.|+ +++.|+| ++||||++|+++.++|.+.++.+.+.+ |++|++||++|+.+ ......++||.+|+++||+|
T Consensus 183 ~~~~~~~~~L~v-~~~fHs~~l~~~~~~~~~~l~~~~~~~--p~ipi~S~~~g~~~----~~~~~~~~~~~~~l~~pV~f 255 (290)
T TIGR00128 183 EMGAKRAVPLEV-SGAFHSRFMKPAAEKFAETLEACQFND--PTVPVISNVDAKPY----TNGDRIKEKLSEQLTSPVRW 255 (290)
T ss_pred HcCCCeEEEcCC-CCCcccHHHHHHHHHHHHHHHcCCCCC--CCccEEECCCCCcc----CCHHHHHHHHHHHccCCccH
Confidence 3455 6889999 999999999999999999999999887 99999999999977 12234578999999999999
Q ss_pred HHHHhhCCC--CcEEEEeCCchhhHHHHHHc
Q psy9441 82 YEALQHVPE--NAVVIEIAPHALLQAIIKRA 110 (418)
Q Consensus 82 ~~ai~~~~~--~~~~iEigp~~~L~~~~~~~ 110 (418)
.++++.+.+ ..+|||+||+++|+++++++
T Consensus 256 ~~~i~~l~~~g~~~~ie~gp~~~l~~~~~~~ 286 (290)
T TIGR00128 256 TDSVEKLMARGVTEFAEVGPGKVLTGLIKRI 286 (290)
T ss_pred HHHHHHHHHCCCCEEEEECCchHHHHHHHHh
Confidence 999999976 48999999999999999986
No 11
>smart00826 PKS_DH PKS_DH.
Probab=99.50 E-value=7.7e-13 Score=113.95 Aligned_cols=145 Identities=19% Similarity=0.280 Sum_probs=103.0
Q ss_pred CcceEEEeecCcccccccCceeCCEEEeecccHHHHHHHHHHHhh-CCCeeeeccccccceecccccCCCCC-ceEEEec
Q psy9441 191 GECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIE-SIPRDDEFIALLHEIHNTNIAGHPYR-GYTVLSD 268 (418)
Q Consensus 191 ~~~~~~~~l~~~~~~~L~dH~v~g~~v~P~a~yle~a~~A~~~~~-~~~~~l~dv~~~~~~~~pl~~~~~~~-~~e~~~~ 268 (418)
....|+..++.+..+|+.||+++|..++|+++|++|+++++.... ...+.++|+ .|.+|+.++..+. .+++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~l~~h~v~~~~~~P~~~~~~~~~~a~~~~~~~~~~~l~~~----~~~~pl~~~~~~~~~~~~~~~ 89 (167)
T smart00826 14 GGVVFTGRLSLRTHPWLADHRVGGTVVLPGAAYVEMALAAADEVGCGAAVRLEEL----TLEAPLVLPEDGAVEVQVVVG 89 (167)
T ss_pred CceEEEEEeCCCCCchhhcCEECCEEEecHHHHHHHHHHHHHHhCCCCCceEeEE----EeccccccCCCCCEEEEEEEe
Confidence 345789999888899999999999999999999999999987665 345679999 9999999977532 2333221
Q ss_pred cCCcceeeEEEEEEEe------CCeEEEEEEEEecCCCCCC-CCCCCCCCccccccccccChhHHHHHHHhcCCccCccC
Q psy9441 269 NSATHELAVSEFELCE------SGSVAVSGRIRTPEDVSKE-QLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAF 341 (418)
Q Consensus 269 ~~~~~~~~~~~f~v~s------~~~~h~~g~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~G~~yG~~F 341 (418)
... ..+...|++.+ .|+.||+|.+......... ..... .+ ...+...++.+.+|..+...|+.||+.|
T Consensus 90 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~y~~~~~~g~~~g~~f 164 (167)
T smart00826 90 APD--ESGRRTFEVYSRPDGDGPWTRHATGTLRPAAAAPAAPAADLA-AW--PPAGAEPVDVADFYERLAARGLEYGPAF 164 (167)
T ss_pred cCC--CCCceEEEEEeCCCCCCCceeeeEEEEecCCCCCCCCccccc-cC--CCCCCcccCHHHHHHHHHhcCcccCccc
Confidence 111 11334566665 3899999999754321111 11111 11 2235567888999999999999999999
Q ss_pred ccc
Q psy9441 342 RGV 344 (418)
Q Consensus 342 q~i 344 (418)
|.+
T Consensus 165 ~~~ 167 (167)
T smart00826 165 QGL 167 (167)
T ss_pred cCC
Confidence 875
No 12
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=99.48 E-value=2e-14 Score=134.94 Aligned_cols=101 Identities=21% Similarity=0.270 Sum_probs=89.5
Q ss_pred CCCc-eeeEeecCCcccCCcchhhhHHHHHHHHhhhCCCCCCCCCeEEEccCCCCCCCCccccCCCchhhHhhhcccccH
Q psy9441 3 SPQG-MCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLF 81 (418)
Q Consensus 3 ~~gi-~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~v~~~~~~~~~~~~~~~~~yw~~nl~~pV~f 81 (418)
+.|. ++..|+| +.||||++|+|+.++|.+.|..+.+.. +.+|++||++++.. .......+-..+|+.+||+|
T Consensus 186 ~~g~kr~i~l~v-s~pfHs~lm~pa~~~~~~~l~~~~~~~--~~ipvi~n~~~~~~----~~~~~i~~~L~~q~~~pVrW 258 (310)
T COG0331 186 EAGAKRAIPLPV-SGPFHSPLMKPAADELAEALEKVRFSD--PLVPVISNVDAKPV----LDGEEIRELLAKQLTSPVRW 258 (310)
T ss_pred HhhhhhhcccCC-CchhhhhhhHHHHHHHHHHHHhcCCCC--ccceeeeccccccc----cCHHHHHHHHHHHhcCCeeH
Confidence 3443 4667999 999999999999999999999999988 99999999999875 23344567899999999999
Q ss_pred HHHHhhCCC--CcEEEEeCCchhhHHHHHHc
Q psy9441 82 YEALQHVPE--NAVVIEIAPHALLQAIIKRA 110 (418)
Q Consensus 82 ~~ai~~~~~--~~~~iEigp~~~L~~~~~~~ 110 (418)
.++++.+.+ .+.|+|+||+.+|++++|++
T Consensus 259 ~etv~~l~~~gv~~~~EiGpg~vL~gL~kri 289 (310)
T COG0331 259 TETVETLKADGVTRFVEIGPGKVLTGLAKRI 289 (310)
T ss_pred HHHHHHHHhcCceEEEEeCCcHHHHHHHHhh
Confidence 999999987 58999999999999999998
No 13
>KOG2926|consensus
Probab=99.43 E-value=1.6e-13 Score=125.46 Aligned_cols=98 Identities=20% Similarity=0.215 Sum_probs=86.8
Q ss_pred eeeEeecCCcccCCcchhhhHHHHHHHHhhhCCCCCCCCCeEEEccCCCCCCCCccccCCCchhhHhhhcccccHHHHHh
Q psy9441 7 MCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLFYEALQ 86 (418)
Q Consensus 7 ~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~v~~~~~~~~~~~~~~~~~yw~~nl~~pV~f~~ai~ 86 (418)
+.++|.| +.||||++|+|+.+.+.++|..+.++. |.+|+||||+|+++. ...-...-+.+++.+||+|.++++
T Consensus 258 r~~~LaV-sgAFHTr~MepAvepl~~Al~~vei~~--p~~pViSNvdg~~~~----~~~hi~~~l~kQ~~rPV~we~~~~ 330 (386)
T KOG2926|consen 258 RMKRLAV-SGAFHTRLMEPAVEPLTKALKAVEIKN--PVIPVISNVDGKPYR----DPGHILKQLAKQIVRPVQWEQTLK 330 (386)
T ss_pred hheeeee-ccccchhhhhhhHHHHHHHHHHHHhcC--CCcceeecCCCcccC----ChHHHHHHHHHHhcCchhHHHHHH
Confidence 5789999 999999999999999999999999987 999999999999872 222234568999999999999999
Q ss_pred hCCC-----CcEEEEeCCchhhHHHHHHcC
Q psy9441 87 HVPE-----NAVVIEIAPHALLQAIIKRAK 111 (418)
Q Consensus 87 ~~~~-----~~~~iEigp~~~L~~~~~~~~ 111 (418)
++.+ ...++|+||+.+|.+.+++++
T Consensus 331 ti~sk~~~g~~~sye~GPG~~l~~ilk~~~ 360 (386)
T KOG2926|consen 331 TIYSKQGVGFPRSYEVGPGRVLVAILKRNN 360 (386)
T ss_pred HHHhcCCCCCCceEeeCCcHHHHHHHHHhC
Confidence 9975 378999999999999999973
No 14
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.95 E-value=4e-09 Score=122.85 Aligned_cols=196 Identities=9% Similarity=-0.031 Sum_probs=124.5
Q ss_pred eEEEeecCcccccccCceeCCEEEeecccHHHHHHHHHHHhhCCCeeeeccccccceecccccCCCCC-c-----eEEEe
Q psy9441 194 VIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYR-G-----YTVLS 267 (418)
Q Consensus 194 ~~~~~l~~~~~~~L~dH~v~g~~v~P~a~yle~a~~A~~~~~~~~~~l~dv~~~~~~~~pl~~~~~~~-~-----~e~~~ 267 (418)
.....++.+.+|||.||+|+|.+|+|++.-++++.+++...+...+.++|+ +++++++++.+.. . +++..
T Consensus 2298 ~~~~~l~~~~~pfl~dH~i~g~~vlP~~~~~~w~~~~~~~~~p~~~~~~d~----~vlkgivfd~~~~~~~~~~~~~~~~ 2373 (2582)
T TIGR02813 2298 RVMRTLDPKNMTFIADHCIGGDKVLPTVCAIAWMREAAMVALGAFVGVADY----KLLKGVIFDGSEATEYIDMILQLEL 2373 (2582)
T ss_pred eeEeeeccccCchHHhcccCCeeechHHHHHHHHHHHHHHhCCCceeeeee----eeecceEecCCcccccccceEEEee
Confidence 345667778999999999999999999999999999999887555889999 9999999987532 2 22221
Q ss_pred ccCCcceeeEEEEEEE----eCCeEEEEEEEEecCCCCCCCC-CCCCCC---ccccccccccChhHHHHHHHhcCCccCc
Q psy9441 268 DNSATHELAVSEFELC----ESGSVAVSGRIRTPEDVSKEQL-DLPELT---PAISSEMLELSSADVYKDLRLRGYDYSG 339 (418)
Q Consensus 268 ~~~~~~~~~~~~f~v~----s~~~~h~~g~i~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~Y~~~~~~G~~yG~ 339 (418)
+... ........++. +....|..+.+........... ...... ..........+...+|+.- -+++||
T Consensus 2374 ~~~~-~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~g---~LFHGp 2449 (2582)
T TIGR02813 2374 TPLV-VDTKISTTNEQALISFHYRPQYTAVLVAERKEAPTAELFLPEALPELLPETVLSSIEEAGALYSNG---TLFHGP 2449 (2582)
T ss_pred eecc-ccccccccccccccCCCCccceeeeeeccccccccccccCccccccccccccccccCcccccccCC---ceecCc
Confidence 1000 00000011111 2344577777654322111100 000000 0000112234556788652 279999
Q ss_pred cCccccccccCC---cEEEEecCC-----------------CchhHHHHHHHHHHhhhc--cCCccccceeeEEEEcchh
Q psy9441 340 AFRGVSQSDNKG---FTGKLDWTG-----------------NWISYIDTMLQFSILGIN--TRELYLPTRMQRVCIDPAK 397 (418)
Q Consensus 340 ~Fq~i~~~~~~~---~~a~i~~~~-----------------~hP~lLD~~lQ~~~~~~~--~~~~~lP~~i~~i~~~~~~ 397 (418)
.||+|+++..-+ ..+...++. ..|.++|.+||++++|.. .+...||.+|++++++.+.
T Consensus 2450 ~~qgI~~v~~~~~~~~~~~~~~~~~~~~~~g~f~~~~~~~~~~p~~~D~~~Q~~~vW~~~~~g~~sLP~~~~~~~~~~~~ 2529 (2582)
T TIGR02813 2450 RLQGIKAVLAFDDQGLLAKCQLPAVASLDCGEFPPSPLNSGSQPFAEDILLQAMLVWARLKYGAASLPSSIGEFVSYRPV 2529 (2582)
T ss_pred chhhhHHhhhcCCcCceeEeecCCCChhhccCCccccCccccChhHHHHHHHHHHHHHHHhcCCCCCCcccceEEEecCC
Confidence 999999997522 234443332 138999999999988853 5677899999999999754
No 15
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=92.02 E-value=1.1 Score=36.29 Aligned_cols=94 Identities=10% Similarity=0.112 Sum_probs=56.6
Q ss_pred eEEEeecCcccccccCceeCCEEEeecccHHHHHHHHHHHhh--------CC---CeeeeccccccceecccccCCCCCc
Q psy9441 194 VIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIE--------SI---PRDDEFIALLHEIHNTNIAGHPYRG 262 (418)
Q Consensus 194 ~~~~~l~~~~~~~L~dH~v~g~~v~P~a~yle~a~~A~~~~~--------~~---~~~l~dv~~~~~~~~pl~~~~~~~~ 262 (418)
....+++ .+.+|+++| ..|.+++||...+|++..++.... +. ...++++ +|.+|+...+ .
T Consensus 23 ~~~~~v~-~d~~~~~~h-f~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~----kf~~pv~pgd---~ 93 (131)
T cd01288 23 VAIKNVT-INEPFFQGH-FPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKA----RFRKPVVPGD---Q 93 (131)
T ss_pred EEEEEec-CCChhhcCC-CCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeeccc----EEccccCCCC---E
Confidence 3445555 467899999 478999999999998877766532 11 2346899 9999998744 2
Q ss_pred eEEEeccCCcc-eeeEEEEEEEeCCeEEEEEEEEe
Q psy9441 263 YTVLSDNSATH-ELAVSEFELCESGSVAVSGRIRT 296 (418)
Q Consensus 263 ~e~~~~~~~~~-~~~~~~f~v~s~~~~h~~g~i~~ 296 (418)
+++..+..... .....+.++..+.+..++|++..
T Consensus 94 l~i~~~v~~~~~~~~~~~~~~~~~g~~v~~~~~~~ 128 (131)
T cd01288 94 LILEVELLKLRRGIGKFKGKAYVDGKLVAEAELMF 128 (131)
T ss_pred EEEEEEEEEeeCCEEEEEEEEEECCEEEEEEEEEE
Confidence 33322111000 00122334444667777777654
No 16
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=91.84 E-value=1.4 Score=36.42 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=56.3
Q ss_pred eEEEeecCcccccccCceeCCEEEeecccHHHHHHHHHHHhh----C------C---CeeeeccccccceecccccCCCC
Q psy9441 194 VIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIE----S------I---PRDDEFIALLHEIHNTNIAGHPY 260 (418)
Q Consensus 194 ~~~~~l~~~~~~~L~dH~v~g~~v~P~a~yle~a~~A~~~~~----~------~---~~~l~dv~~~~~~~~pl~~~~~~ 260 (418)
..+..++ .+.+|+.+|- .|.+++||...+|++..++.-.. . . -..++++ +|.+|+...+
T Consensus 31 ~~~~~v~-~~~~~f~gHF-p~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----kF~~~v~pGd-- 102 (140)
T TIGR01750 31 VAIKNVT-INEPFFQGHF-PEKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKA----KFRRPVVPGD-- 102 (140)
T ss_pred EEEEEcC-CCCCeecCCC-cCcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeeccee----EECCccCCCC--
Confidence 4455565 4568999994 67889999999999887764321 1 1 1345899 9999987754
Q ss_pred CceEEEeccCCcc-eeeEEEEEEEeCCeEEEEEEEEe
Q psy9441 261 RGYTVLSDNSATH-ELAVSEFELCESGSVAVSGRIRT 296 (418)
Q Consensus 261 ~~~e~~~~~~~~~-~~~~~~f~v~s~~~~h~~g~i~~ 296 (418)
.+++..+..... .....+.++..+.+..|+|++..
T Consensus 103 -~l~i~~~i~~~~~~~~~~~~~~~~~g~~va~~~~~~ 138 (140)
T TIGR01750 103 -QLILHAEFLKKRRKIGKFKGEATVDGKVVAEAEITF 138 (140)
T ss_pred -EEEEEEEEEEccCCEEEEEEEEEECCEEEEEEEEEE
Confidence 233322211000 01223444444667777777653
No 17
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=91.49 E-value=1.9 Score=34.91 Aligned_cols=59 Identities=14% Similarity=0.304 Sum_probs=43.7
Q ss_pred eEEEeecCcccccccCceeCCEEEeecccHHHHHHHHHHHhh---CC--------C--eeeeccccccceecccccCC
Q psy9441 194 VIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIE---SI--------P--RDDEFIALLHEIHNTNIAGH 258 (418)
Q Consensus 194 ~~~~~l~~~~~~~L~dH~v~g~~v~P~a~yle~a~~A~~~~~---~~--------~--~~l~dv~~~~~~~~pl~~~~ 258 (418)
..+..++ .+++|+.+|- .|.+++||+..+|++..++.... +. . ..++++ +|.+|+...+
T Consensus 22 ~~~~~i~-~~~~~~~~hf-p~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----kf~~~v~pgd 93 (131)
T cd00493 22 VAEKNVT-PNEPFFQGHF-PGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKV----KFRGPVLPGD 93 (131)
T ss_pred EEEEecC-CCChhhcccC-CCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEccee----EECCCcCCCC
Confidence 3444555 4778999997 78899999999999988876654 11 1 456899 9999987554
No 18
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=87.63 E-value=2 Score=35.85 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=37.2
Q ss_pred cccccccCceeCCEEEeecccHHHHHHHHHHHhh-------CC---CeeeeccccccceecccccCC
Q psy9441 202 EEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIE-------SI---PRDDEFIALLHEIHNTNIAGH 258 (418)
Q Consensus 202 ~~~~~L~dH~v~g~~v~P~a~yle~a~~A~~~~~-------~~---~~~l~dv~~~~~~~~pl~~~~ 258 (418)
.+.+|+++|- .|.+++||...+|++..++.... +. ...++++ +|.+|+...+
T Consensus 45 ~d~~~~~ghf-p~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~----kF~~pv~pGd 106 (147)
T PRK00006 45 INEPFFQGHF-PGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKA----RFKRPVVPGD 106 (147)
T ss_pred CCCccccCCC-cCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEE----EEccccCCCC
Confidence 5667899994 46799999999997666554322 11 1356899 9999997544
No 19
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=85.73 E-value=3.2 Score=34.24 Aligned_cols=59 Identities=14% Similarity=0.234 Sum_probs=37.4
Q ss_pred eEEEeecCcccccccCceeCCEEEeecccHHHHHHHHHHHhh---C----CC--------eeeeccccccceecccccCC
Q psy9441 194 VIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIE---S----IP--------RDDEFIALLHEIHNTNIAGH 258 (418)
Q Consensus 194 ~~~~~l~~~~~~~L~dH~v~g~~v~P~a~yle~a~~A~~~~~---~----~~--------~~l~dv~~~~~~~~pl~~~~ 258 (418)
+-+..++ .+++|+++|- .|.+++||+..+|++..++..+. . .. ..++++ +|.+++.-.+
T Consensus 28 ~a~~~v~-~~~~~f~gHF-p~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----kF~~~v~Pg~ 101 (138)
T PF07977_consen 28 VARKNVT-PDEPFFDGHF-PGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNV----KFRGPVYPGD 101 (138)
T ss_dssp EEEEEE--TTSGGGGCST-TTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEE----EE-S-B-TTE
T ss_pred EEEEEeC-CCCCEEEcCC-CCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEE----EECccEeCCC
Confidence 3444555 5678999995 88999999999999887776554 1 11 357899 9999886544
No 20
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=79.26 E-value=17 Score=30.40 Aligned_cols=52 Identities=13% Similarity=0.198 Sum_probs=39.6
Q ss_pred cccccccCceeCCEEEeecccHHHHHHHHHHHhh----C-C-----CeeeeccccccceecccccCC
Q psy9441 202 EEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIE----S-I-----PRDDEFIALLHEIHNTNIAGH 258 (418)
Q Consensus 202 ~~~~~L~dH~v~g~~v~P~a~yle~a~~A~~~~~----~-~-----~~~l~dv~~~~~~~~pl~~~~ 258 (418)
...|++.+| .-|.+++||...+|.++.++.-+. + . ...+.++ +|.+|+.-.+
T Consensus 43 ~nepfF~gH-FP~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~~----kF~~~V~PGd 104 (147)
T COG0764 43 INEPFFTGH-FPGDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDNA----KFKRPVLPGD 104 (147)
T ss_pred CCCCeeCCc-CCCCCCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEecce----eecCccCCCC
Confidence 567899999 467899999999998776665443 1 1 2678999 9999986544
No 21
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=62.78 E-value=50 Score=28.38 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=40.8
Q ss_pred ceEEEeecCcccccccCceeCCEEEeecccHHHHHHHHHHHhh---C---C--CeeeeccccccceecccccCC
Q psy9441 193 CVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIE---S---I--PRDDEFIALLHEIHNTNIAGH 258 (418)
Q Consensus 193 ~~~~~~l~~~~~~~L~dH~v~g~~v~P~a~yle~a~~A~~~~~---~---~--~~~l~dv~~~~~~~~pl~~~~ 258 (418)
..-+.+++. +.+|+.+|- .+.+++||...+|++..++.... . . -..++++ +|.+++.-.+
T Consensus 52 i~a~k~Vs~-~e~ff~gHF-p~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~gi~~~----kfr~~v~Pgd 119 (169)
T TIGR01749 52 VEAELDIRP-DLWFFGCHF-IGDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVGEV----KFTGQVLPTA 119 (169)
T ss_pred EEEEEEcCC-CCcceeCCC-CCCCcCchHHHHHHHHHHHHHHHhccccCCceEEeeccEE----EEccCEecCC
Confidence 344555654 457899995 67799999999999888765543 1 1 1345677 8888876544
No 22
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=61.21 E-value=61 Score=27.22 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=39.9
Q ss_pred ceEEEeecCcccccccCceeCCEEEeecccHHHHHHHHHHHhh---CC-------C-----eeeeccccccceecccccC
Q psy9441 193 CVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIE---SI-------P-----RDDEFIALLHEIHNTNIAG 257 (418)
Q Consensus 193 ~~~~~~l~~~~~~~L~dH~v~g~~v~P~a~yle~a~~A~~~~~---~~-------~-----~~l~dv~~~~~~~~pl~~~ 257 (418)
.+-+.+++. +.+|+.+|- .+.+++||+..+|.+..++.-.. +. . ..++++ +|..++.-.
T Consensus 29 i~a~k~v~~-~e~ff~gHF-p~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----kfr~~v~Pg 102 (150)
T cd01287 29 LRAEKDIDP-DDWFFPCHF-HGDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGEW----KYRGQITPH 102 (150)
T ss_pred EEEEEEcCC-CCceEcCCC-CCCCcCchHHHHHHHHHHHHHHHhhcccccccCcccceeEeccceEE----EECccCcCC
Confidence 334555654 457999995 67799999999999887765443 11 0 245677 888877544
Q ss_pred C
Q psy9441 258 H 258 (418)
Q Consensus 258 ~ 258 (418)
+
T Consensus 103 d 103 (150)
T cd01287 103 N 103 (150)
T ss_pred C
Confidence 3
No 23
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=55.61 E-value=1.2e+02 Score=26.17 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=40.6
Q ss_pred ceEEEeecCcccccccCceeCCEEEeecccHHHHHHHHHHHhh---C---CC--eeeeccccccceecccccCC
Q psy9441 193 CVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIE---S---IP--RDDEFIALLHEIHNTNIAGH 258 (418)
Q Consensus 193 ~~~~~~l~~~~~~~L~dH~v~g~~v~P~a~yle~a~~A~~~~~---~---~~--~~l~dv~~~~~~~~pl~~~~ 258 (418)
..-+.+++. +.+|+.+|- .+.+++||...+|++..++.-.. . .. ..++++ +|..++.-.+
T Consensus 55 i~a~k~v~~-~e~ff~gHF-p~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~g~~~~----kfr~~v~Pgd 122 (172)
T PRK05174 55 IVAELDINP-DLWFFGCHF-IGDPVMPGCLGLDAMWQLVGFYLGWLGGPGKGRALGVGEV----KFTGQVLPTA 122 (172)
T ss_pred EEEEEECCC-CCccccCCC-CCCCcCchHHHHHHHHHHHHHHHhcccccCceEEeeccEE----EECccCcCCC
Confidence 344556654 456889995 67899999999999888766543 1 11 345677 7888775444
No 24
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=44.18 E-value=24 Score=30.36 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=42.8
Q ss_pred CCCCCceeeEeecCCcccCCcchhhhHHHHHHHHhhhCCCCCCCCCeEEEccCCCC
Q psy9441 1 MLSPQGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPED 56 (418)
Q Consensus 1 l~~~gi~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~v~~~~ 56 (418)
|++.||++-.++. |-..=.++-+.+-+++.+.+..++-.-...++-++||..|..
T Consensus 36 Lk~~Gik~li~Dk-DNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~ 90 (168)
T PF09419_consen 36 LKKKGIKALIFDK-DNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSS 90 (168)
T ss_pred hhhcCceEEEEcC-CCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 5789999999999 888877887888888888888876332113689999998764
No 25
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=29.91 E-value=2.4e+02 Score=28.64 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=38.7
Q ss_pred EEeecCcccccccCceeCCEEEeecccHHHHHHHHHHHhh----C--C-----CeeeeccccccceecccccCC
Q psy9441 196 DVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIE----S--I-----PRDDEFIALLHEIHNTNIAGH 258 (418)
Q Consensus 196 ~~~l~~~~~~~L~dH~v~g~~v~P~a~yle~a~~A~~~~~----~--~-----~~~l~dv~~~~~~~~pl~~~~ 258 (418)
...++ .+.+|+++|- .|.+++||...+|.+..++.... + . -..++++ +|.+|+...+
T Consensus 353 ~k~Vs-~De~ff~GHF-Pg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kv----KF~~PV~PGD 420 (464)
T PRK13188 353 IKNVT-MNEPFFQGHF-PGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKV----KFRQKVVPGD 420 (464)
T ss_pred EEEcC-CCcHHhhccC-CCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEE----EEcCCCCCCC
Confidence 33444 3456888885 57899999999998766654321 1 1 1356899 9999996643
No 26
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=22.63 E-value=4.3e+02 Score=21.54 Aligned_cols=38 Identities=13% Similarity=-0.041 Sum_probs=26.6
Q ss_pred EEEeecccHHHHHHHHHHHhh-------C-C---C--eeeeccccccceeccccc
Q psy9441 215 RILFPATGTEEAVEHFLQKIE-------S-I---P--RDDEFIALLHEIHNTNIA 256 (418)
Q Consensus 215 ~~v~P~a~yle~a~~A~~~~~-------~-~---~--~~l~dv~~~~~~~~pl~~ 256 (418)
..++||...+|.+..++.... + . + ..++++ +|.++..-
T Consensus 44 ~~~~P~~l~iE~mAQa~a~~~g~~~~~~~~~~~~g~l~~i~~~----~f~~~v~p 94 (138)
T cd01289 44 HGRLPAWVGIEYMAQAIAAHGGLLARQQGNPPRPGFLLGSRKY----EAHVDRFD 94 (138)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEE----EEEcceeC
Confidence 378999999998877653321 1 1 1 468899 99998654
Done!