RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9441
(418 letters)
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 307 bits (787), Expect = 1e-93
Identities = 172/422 (40%), Positives = 225/422 (53%), Gaps = 20/422 (4%)
Query: 8 CKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSS 67
K G AFHS ++ P L L ++I PKPRS RW+S+SIPE W LA+ S
Sbjct: 672 VKEVRTGGIAFHSYFMESIAPTLLRQLRKVILDPKPRSKRWLSTSIPEAQWQGSLARTFS 731
Query: 68 PAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKR-AKPGAVSIGLTKRGAPD 126
Y VNNL+SPVLF EALQHVP +AVV+EIAPHALLQA++KR + I L K+ D
Sbjct: 732 AEYSVNNLVSPVLFQEALQHVPAHAVVVEIAPHALLQAVLKRSLESSCTIIPLMKKDHRD 791
Query: 127 LPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSVASFAG-- 184
LS +G+L+ AG+ N L PPV+FP RGTP+I ++WDHS W V S A
Sbjct: 792 NLEFFLSNVGRLHLAGVSVNPNGLFPPVEFPAPRGTPLISPHIKWDHSQAWDVPSAADFP 851
Query: 185 KGGSRSGECVIDVDLSKE-EDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEF 243
G S S V D+S E D YL H IDGR+LFP TG L + S +E
Sbjct: 852 SGSSCSSVAVYKFDVSPESPDHYLVDHCIDGRVLFPGTGYLWLTWKTLARALS-QNLEET 910
Query: 244 IALLHEIHNTNIAGHPYRGYTVLSDNSATH-ELAVSE----FELCES-GSVAVSGRIRTP 297
+ ++ T+L E+ + E FE+ +S GS+ SG++
Sbjct: 911 PVVFEDVT--------LHQATILPKTGTVSLEVRLLEASHAFEVSDSNGSLIASGKVYQW 962
Query: 298 EDVSKEQLDLPE-LTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKL 356
E + D + PA S+ LS DVYKDLRLRGYDY F+ V +SD +G G+L
Sbjct: 963 ESPDPKLFDTRAAVDPADSTAEFRLSQGDVYKDLRLRGYDYGPFFQLVLESDLEGNRGRL 1022
Query: 357 DWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKALVETLSGDKKTVPVAM 416
W +W+S++D ML SIL LYLPTR + IDP H+ + TL + V +
Sbjct: 1023 QWNDSWVSFLDAMLHMSILAPGQLGLYLPTRFTSIRIDPVTHRQKLYTLQDTTQAADVVV 1082
Query: 417 YR 418
R
Sbjct: 1083 DR 1084
Score = 52.6 bits (126), Expect = 2e-07
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 217 LFPATG-TEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHEL 275
L A+G T EAV+ L++ RD F+ +L+EI + P+RGY VL + + E+
Sbjct: 423 LLQASGRTLEAVQTLLEQGLRHSRDLAFVGMLNEIAAVSPVAMPFRGYAVLGGEAGSQEV 482
Query: 276 A 276
Sbjct: 483 Q 483
Score = 30.2 bits (68), Expect = 1.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 1 MLSPQGMCKAFDVAG 15
MLS G C++FD G
Sbjct: 205 MLSQDGTCRSFDAEG 219
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 239 bits (613), Expect = 5e-71
Identities = 122/305 (40%), Positives = 169/305 (55%), Gaps = 26/305 (8%)
Query: 8 CKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSS 67
K G AFHS ++ P L L ++I PKPRSARW+S+SIPE W + LA+ SS
Sbjct: 674 AKEVRTGGMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSS 733
Query: 68 PAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKR-AKPGAVSIGLTKRGAPD 126
Y+VNNL+SPVLF EAL HVPE+AVV+EIAPHALLQA++KR KP I L K+ D
Sbjct: 734 AEYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHRD 793
Query: 127 LPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSVASFAG-- 184
L+G+G+L+ +G+ N L PPV+FP RGTP+I L++WDHS W V +
Sbjct: 794 NLEFFLAGIGRLHLSGIDANPNALFPPVEFPAPRGTPLISPLIKWDHSLAWDVPAAEDFP 853
Query: 185 KGGSRSGECVIDVD-LSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEF 243
G + ++D S+ D YL H +DGR+LFPATG V L + + +
Sbjct: 854 NGSGSPSAAIYNIDTSSESPDHYLVDHTLDGRVLFPATGYLSIVWKTLARALGLGVEQLP 913
Query: 244 IAL----LHEIHNTNIAGHPYRGYTVLSDNSATH-ELAVSE----FELCESGSVAVSGRI 294
+ LH+ T+L E+ + E FE+ E+G++ VSG++
Sbjct: 914 VVFEDVVLHQ---------A----TILPKTGTVSLEVRLLEASRAFEVSENGNLVVSGKV 960
Query: 295 RTPED 299
+D
Sbjct: 961 YQWDD 965
Score = 43.7 bits (104), Expect = 1e-04
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 223 TEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELA 276
T EAV+ L++ +D F+++L++I P+RGY VL E+
Sbjct: 432 TPEAVQKLLEQGLRHSQDLAFLSMLNDIAAVPATAMPFRGYAVLGGERGGPEVQ 485
Score = 29.8 bits (68), Expect = 1.8
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 1 MLSPQGMCKAFDVAG 15
MLSP+G CKAFD AG
Sbjct: 207 MLSPEGTCKAFDTAG 221
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 58.9 bits (143), Expect = 1e-09
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 12/137 (8%)
Query: 16 HAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNL 75
HAFHS +A A LR + R+ P S+ G A + V L
Sbjct: 275 HAFHSPLMAPAAEALRRAAGRLPWRR-PE-RPVASTVT-----GAWWADEDPVEVLVRQL 327
Query: 76 LSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVSIGLTKRGAPDLPAHLLSGL 135
PV F EAL + + +++E+ P +L A+ + A AVS+ GA A + +G
Sbjct: 328 TGPVRFREALGLL-DADLLVEVGPGRMLSALAEAAGRTAVSL---DAGAAS-AAGMAAGT 382
Query: 136 GKLYNAGLQPRLNQLLP 152
L+ AG
Sbjct: 383 AALFAAGAVDDATPFFA 399
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 53.8 bits (130), Expect = 7e-08
Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 16/147 (10%)
Query: 16 HAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNL 75
+A HS + +L + L I +P S++ + + AY NL
Sbjct: 742 YASHSPQVESLREELLTELAGI--SPVSADVALYSTTTGQPIDTATM----DTAYWYANL 795
Query: 76 LSPVLFYEALQHVPEN--AVVIEIAPHALLQAII-------KRAKPGAVSIGLTKRGAPD 126
V F +A + + E +E++PH +L I A GA +G +R
Sbjct: 796 REQVRFQDATRQLAEAGFDAFVEVSPHPVLTVGIEATLDSALPADAGACVVGTLRRDRGG 855
Query: 127 LPAHLLSGLGKLYNAGLQPRLNQLLPP 153
A + LG+ Y G++ +
Sbjct: 856 -LADFHTALGEAYAQGVEVDWSPAFAD 881
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 53.4 bits (129), Expect = 8e-08
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 15/146 (10%)
Query: 16 HAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNL 75
+A HS I +L + I AP+P + S+ GT L Y NL
Sbjct: 726 YASHSPQIERVREELLETTGDI--APRPARVTFHSTVESRSMDGTEL----DARYWYRNL 779
Query: 76 LSPVLFYEALQHVPEN--AVVIEIAPHALLQAII------KRAKPGAVSIGLTKRGAPDL 127
V F +A+ + E+ IE++PH ++ + AV +G R D
Sbjct: 780 RETVRFADAVTRLAESGYDAFIEVSPHPVVVQAVEEAVEEADGAEDAVVVGSLHRDGGD- 838
Query: 128 PAHLLSGLGKLYNAGLQPRLNQLLPP 153
+ L + + +G+ R + LP
Sbjct: 839 LSAFLRSMATAHVSGVDIRWDVALPG 864
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 3e-07
Identities = 63/434 (14%), Positives = 131/434 (30%), Gaps = 122/434 (28%)
Query: 30 LRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVL-FYEALQHV 88
L S + P + +I + + Q Y+V+ L P L +AL +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQR--DRLYNDN---QVFAKYNVSRL-QPYLKLRQALLEL 147
Query: 89 -PENAVVIE---------IAPHALLQAIIKRAKPGAVS-IGLTKRGAPDLPAHLLSGLGK 137
P V+I+ +A L ++ + + L +P+ +L L K
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET---VLEMLQK 204
Query: 138 LYNAGLQPRLNQLL---PPVKFPVGRGTPMIQSLVEW----------DH-STEWSVASFA 183
L + P +K + ++ L++ + + +F
Sbjct: 205 LLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 184 GKGGSRSGEC----------VIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQK 233
C V D + H +E L+
Sbjct: 264 LS-------CKILLTTRFKQVTDFLSAATTTHISLDHHSMT---L---TPDEVKSLLLKY 310
Query: 234 IESIPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVSEF-ELCESGSVAVSG 292
++ P+D L E+ +P +S E G
Sbjct: 311 LDCRPQD-----LPREVL----TTNP---------------RRLSIIAESIRDG------ 340
Query: 293 RIRTPEDVSKEQLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGF 352
+ T ++ + ++ +LT I S + L A+ Y+ + +D F +
Sbjct: 341 -LATWDNW--KHVNCDKLTTIIESSLNVLEPAE-YRKM----FDRLSVFP-----PSAHI 387
Query: 353 TGK---LDWTGNWISYIDTML------QFSILGINTRE-------LYLPTRMQRVCIDPA 396
L W + D M+ ++S++ +E +YL +++ + A
Sbjct: 388 PTILLSLIWFD--VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE-NEYA 444
Query: 397 KHKALVETLSGDKK 410
H+++V+ + K
Sbjct: 445 LHRSIVDHYNIPKT 458
Score = 35.2 bits (80), Expect = 0.043
Identities = 50/314 (15%), Positives = 88/314 (28%), Gaps = 108/314 (34%)
Query: 20 SKYIAEAGPKLRSSLDRIIP--------APKPRSARWISSSIPEDHWGTPL------AQQ 65
KY+ L + P + + A W D+W +
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-------DNWKHVNCDKLTTIIE 360
Query: 66 SSPAYHVNNLLSPVLF---YEALQHVPENAVVIEIAPHALLQ------------------ 104
SS +N L P + ++ L P + I P LL
Sbjct: 361 SS----LNVL-EPAEYRKMFDRLSVFPPS-AHI---PTILLSLIWFDVIKSDVMVVVNKL 411
Query: 105 ----AIIKRAKPGAVSI-GL---TKRGAPDLPA-H--LLSGLGKLYNAGLQPRLNQLLPP 153
+ K+ K +SI + K + A H ++ YN + L+PP
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH----YNIPKTFDSDDLIPP 467
Query: 154 VKFP-----VGRGTPMIQSLVEWDHSTEWSVAS-------F-------AGKGGSRSGECV 194
+G L +H ++ F + SG +
Sbjct: 468 YLDQYFYSHIGH------HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS-I 520
Query: 195 IDV--DLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEF-----IALL 247
++ L + R++ A+ FL KIE ++ IAL+
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLV-------NAILDFLPKIEENLICSKYTDLLRIALM 573
Query: 248 HEIHNTNIAGHPYR 261
E + I ++
Sbjct: 574 AE--DEAIFEEAHK 585
>3hrq_A PKS, aflatoxin biosynthesis polyketide synthase; hot-DOG fold,
iterative type I PKS, norsolorinic acid, product
template domain; HET: PLM; 1.80A {Aspergillus
parasiticus} PDB: 3hrr_A*
Length = 357
Score = 44.0 bits (103), Expect = 5e-05
Identities = 33/282 (11%), Positives = 75/282 (26%), Gaps = 64/282 (22%)
Query: 162 TPMIQSLVEWDHSTEWSVASFAGKGGSRSGECVIDVDLSKEE-DAYLSGHAIDGRILFPA 220
T + +VE V++ D+S+++ + GH +DG L
Sbjct: 6 TTTLHRVVEETTKPL-------------GATLVVETDISRKDVNGLARGHLVDGIPLCTP 52
Query: 221 TG----TEEAVEHFLQKIESIPRDDEFIALLHEIHNTNI-------AGHPYRGYTVLS-- 267
+ + ++ +Q++ + I L ++ + + P T L+
Sbjct: 53 SFYADIAMQVGQYSMQRLRAGHPGAGAIDGLVDVSDMVVDKALVPHGKGPQLLRTTLTME 112
Query: 268 ----DNSATHELAVSEFELCESGSVAV---SGRIRTPEDVSKEQLDLPELTPAISSEMLE 320
+ T V G + S +R D + L L
Sbjct: 113 WPPKAAATTRSAKVKFATYFADGKLDTEHASCTVRFTSDAQLKSLRRSVSEYKTHIRQLH 172
Query: 321 ----------LSSADVYKDLRLRGYDYSGAFRGVSQ----SDNKGFTGKL------DWTG 360
+ YK L ++ + + +
Sbjct: 173 DGHAKGQFMRYNRKTGYK-LMSSMARFNPDYMLLDYLVLNEAENEAASGVDFSLGSSEGT 231
Query: 361 NWIS--YIDTMLQFSILGIN-------TRELYLPTRMQRVCI 393
++D + Q + +N +++Y+ I
Sbjct: 232 FAAHPAHVDAITQVAGFAMNANDNVDIEKQVYVNHGWDSFQI 273
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 2e-04
Identities = 55/292 (18%), Positives = 99/292 (33%), Gaps = 75/292 (25%)
Query: 179 VASFAGKGGSRSGECVIDVDLSKEEDAYLSG---HAIDGRILFPATGTEEAVEHFLQ--- 232
V+S + V+++ L++ E+ YL G HA+ ++L T + ++
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 233 ---KIESIPRDDEFIALLHEIHNTNIAGHPYRGYTV-------------LSDNSATHELA 276
+ P D + + L A + + L D T+ +
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNA----QLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 277 VSEFELCESGSVAVSGRIRTPEDVSK---EQLDL------PELTP--------AISSEML 319
V + + + +S IRT D K + L++ P TP IS ++
Sbjct: 184 VGDL--IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 320 ELSSADVYK-DLRLRGYDYSGAFRGVSQSDNKGFTGKLDW---------TGNWISYIDTM 369
+ Y +L G+ G R + G TG T +W S+ ++
Sbjct: 242 GVIQLAHYVVTAKLLGFTP-GELRSYLK----GATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 370 LQ-----FSILGINTRELYLPTRMQRVCIDPAKHKALVETLSGDKKTVPVAM 416
+ F I G+ E Y P + P+ + +E G VP M
Sbjct: 297 RKAITVLFFI-GVRCYEAY-P----NTSLPPSILEDSLENNEG----VPSPM 338
Score = 40.0 bits (93), Expect = 0.002
Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 39/128 (30%)
Query: 18 FHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSS--IP----EDHWGTPLAQQSSPAYH 71
FHS + A + L + + + + IP D G+ L S
Sbjct: 427 FHSHLLVPASDLINKDLVK-------NNVSFNAKDIQIPVYDTFD--GSDLRVLSGS--- 474
Query: 72 VNNLLSPVLFYEALQHVP---ENAVVIEIAPHALLQAIIKRAKPGAVSIGLTKRGAPDLP 128
+S + + + +P E + A H L PG S GL L
Sbjct: 475 ----ISERIV-DCIIRLPVKWETTTQFK-ATHILDFG------PGGAS-GLGV-----LT 516
Query: 129 AHLLSGLG 136
G G
Sbjct: 517 HRNKDGTG 524
Score = 38.9 bits (90), Expect = 0.003
Identities = 36/185 (19%), Positives = 59/185 (31%), Gaps = 72/185 (38%)
Query: 177 WSVASFAGKGGSRSGECVIDVDLSKE----EDAYLSGH---------AIDGRILFPATGT 223
A+F DL + DA +GH ++ +
Sbjct: 1739 MEKAAFE--------------DLKSKGLIPADATFAGHSLGEYAALASLADVMSI----- 1779
Query: 224 EEAVE------HFLQKIESIPRDDEFIALLHEIHNTN---IAGHPYRGYTVLSDNSATHE 274
E VE +Q ++PRD E+ +N IA +P G S + +
Sbjct: 1780 ESLVEVVFYRGMTMQ--VAVPRD--------ELGRSNYGMIAINP--GRVAASFSQEALQ 1827
Query: 275 LAVSEF-----ELCE------SGS-VAVSGRIRTPEDVS------KEQ-LDLPELTPAIS 315
V L E +G +R + V+ K Q +D+ EL ++S
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Query: 316 SEMLE 320
E +E
Sbjct: 1888 LEEVE 1892
Score = 37.0 bits (85), Expect = 0.015
Identities = 39/275 (14%), Positives = 71/275 (25%), Gaps = 106/275 (38%)
Query: 204 DAYLSGHAIDGRILFPATGTEEAVEHFLQK----IESIPRDD--EFIALLHEIHNTNIAG 257
D Y + A + ++ A HF I I ++ IH G
Sbjct: 1634 DLYKTSKAA--QDVW-----NRADNHFKDTYGFSILDIVINNPVNLT-----IHFGGEKG 1681
Query: 258 HPYR-GYTVLSDNSATHELAVSEFELCESGSVAVSGRIRTPEDVSKEQLDLPELT-PAI- 314
R Y+ + + +E E + S R+ + + L + T PA+
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL----LSATQFTQPALT 1737
Query: 315 --SSEMLEL----------------S----SA-----------DVYKDLRLRGYDYSGAF 341
E S +A + + + RG
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG------- 1790
Query: 342 RGVSQSDNKGFTGKLDWTGNWISYIDTMLQFSILGINTRELYLPTRM---------QRVC 392
+ + + G+ + + ++ IN P R+ Q V
Sbjct: 1791 MTMQVAVPRDELGRSN--------------YGMIAIN------PGRVAASFSQEALQYVV 1830
Query: 393 IDPAKHKA-LVET-----------LSGDKKTVPVA 415
K LVE +GD + +
Sbjct: 1831 ERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTV 1865
>3kg6_A CURF; polyketide synthase, double hotdog fold, dehydratase, lyase;
2.70A {Lyngbya majuscula}
Length = 285
Score = 41.9 bits (99), Expect = 2e-04
Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 22/168 (13%)
Query: 190 SGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEE----AVEHFLQKIESIPRDD-EFI 244
+ + E YL+ H + G++LFP+TG E A + E + D + +
Sbjct: 17 EDQHRFQSYIGAESPGYLNHHQVFGKVLFPSTGYLEIAASAGKSLFTSQEQVVVSDVDIL 76
Query: 245 A--LLHEIHNTNI------AGHPYRGYTVLSDNSATHELAVSEFELCESGSVAVSGRIRT 296
++ E + A + + + S S ++ L G + +
Sbjct: 77 QSLVIPETEIKTVQTVVSFAENNSYKFEIFS-PSEGENQQTPQWVLHAQGKIYTEPTRNS 135
Query: 297 PEDVSKEQLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGV 344
+ DL + S + + Y++ R +G DY +F+G+
Sbjct: 136 QAKI-----DLEKYQAECSQA---IEIEEHYREYRSKGIDYGSSFQGI 175
>3kg9_A CURK; polyketide synthase, double hotdog fold, dehydratase, lyase;
1.70A {Lyngbya majuscula}
Length = 296
Score = 40.8 bits (96), Expect = 5e-04
Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 22/159 (13%)
Query: 199 LSKEEDAYLSGHAIDGRILFPATGTEE----AVEHFLQKIESIPRDDEFIA---LLHEIH 251
L+ E AYLS H + ++LFPATG E ++ L E + D I ++ E
Sbjct: 31 LTAESPAYLSQHQVFNKVLFPATGYLEIAAAVGKNLLTTGEQVVVSDVTIVRGLVIPETD 90
Query: 252 NTNI------AGHPYRGYTVLSDNSATHELAVSEFELCESGSVAVSGRIRTPEDVSKEQL 305
+ + + S S +++ L G + + T +
Sbjct: 91 IKTVQTVISTLENNSYKLEIFS-TSEGDNQQANQWTLHAEGKIFLDSTTNTKAKI----- 144
Query: 306 DLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGV 344
DL + S + Y+ + RG DY +F+G+
Sbjct: 145 DLEQYQRECSQV---IDIQQHYQQFKSRGIDYGNSFQGI 180
>3kg8_A CURJ; polyketide synthase, double hotdog fold, dehydratase, lyase;
2.45A {Lyngbya majuscula}
Length = 308
Score = 40.8 bits (96), Expect = 5e-04
Identities = 26/169 (15%), Positives = 53/169 (31%), Gaps = 18/169 (10%)
Query: 190 SGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEE----AVEHFLQKIESIPRDDEFIA 245
S E + S E +L+ H + +++ P A E D F
Sbjct: 21 SKEIFFESYFSTENLPFLADHIVYEQVVVPGASHISLLLAAASLTFAATECQIEDILFPQ 80
Query: 246 LL-------HEIHNTNIAGHPYRGYTVLSDNSATHELAVSEFELCESGSVAV---SGRIR 295
L + + + V+S + + S +G++
Sbjct: 81 ALAIPEQGVRTVQVVLTPQNNSFSFQVISFDDSLESQINQVSNNGSHISDWAVHATGKLS 140
Query: 296 TPEDVSKEQLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGV 344
+ + + L E+ S + + SA++Y+ L R +FR +
Sbjct: 141 -VANAEQSLIPLEEIQARCSQK---IDSAEIYQHLWDRQIHLGQSFRWI 185
>3kg7_A CURH; polyketide synthase, double hotdog fold, dehydratase, lyase;
2.77A {Lyngbya majuscula}
Length = 293
Score = 40.4 bits (95), Expect = 6e-04
Identities = 20/168 (11%), Positives = 44/168 (26%), Gaps = 26/168 (15%)
Query: 190 SGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEE----AVEH-------FLQKIESIP 238
+G+ + D++ ++ H + + P AV Q+ +
Sbjct: 21 TGQTIYHQDINLNNHPWIGDHRVYDTPVIPGVSYIAMTLAAVGVPAAVEDINFQQPLFLA 80
Query: 239 RDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVSEFELCESGSVAVSGRIRTPE 298
+ +H + G + V S + A E S +
Sbjct: 81 ESNTTRETQLMLHTADNVGK--QFVEVFSRDGAKQEEWQ----------QHASMSVSENP 128
Query: 299 DVSKEQLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQ 346
PA+ ++ L + + + Y + V Q
Sbjct: 129 PPPPTLSVDI---PALCEQLRPLDTDTLTEIYASISLVYGPMLQAVRQ 173
>3el6_A Erythromycin dehydratase; dehydratase double hotdog fold
CIS-proline, acyltransferase, antibiotic biosynthesis;
1.85A {Saccharopolyspora erythraea}
Length = 313
Score = 37.3 bits (87), Expect = 0.006
Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 29/168 (17%)
Query: 190 SGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAV-------------EHFLQKIES 236
G V LS +E +L+ H + GR L P + + E LQ+
Sbjct: 49 HGGAVFTGRLSTDEQPWLAEHVVGGRTLVPGSVLVDLALAAGEDVGLPVLEELVLQRPLV 108
Query: 237 IPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVSEFELCESGSVAVSGRIRT 296
+ L + + +G R V + A +++ +G++A
Sbjct: 109 LAGAGA--LLRMSVGAPDESGR--RTIDVHAAEDVADL-ADAQWSQHATGTLA------- 156
Query: 297 PEDVSKEQLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGV 344
+ V+ D + P + + D Y L +GY+Y +F+ +
Sbjct: 157 -QGVAAGPRDTEQWPPEDAVR---IPLDDHYDGLAEQGYEYGPSFQAL 200
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP
transacylase, , nucleophili fatty acids biosynthesis;
2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A
Length = 303
Score = 33.3 bits (77), Expect = 0.12
Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 21/115 (18%)
Query: 13 VAGHAFHSKYIAEAGPKLRSSLDRI-IPAPK-P----RSARWISSSIPEDHWGTPLAQQS 66
VAG AFH++++A A ++ I P R + ++S+ L Q
Sbjct: 190 VAG-AFHTEFMAPALDGFAAAAANIATADPTATLLSNRDGKPVTSA---AAAMDTLVSQ- 244
Query: 67 SPAYHVNNLLSPVLFYEALQHVPENAV--VIEIAPHALLQAIIKRAKPGAVSIGL 119
L PV + + E+ V ++E P L I KR G + +
Sbjct: 245 --------LTQPVRWDLCTATLREHTVTAIVEFPPAGTLSGIAKRELRGVPARAV 291
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta
hydrolase-like core; 2.00A {Streptomyces coelicolor}
SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B
Length = 317
Score = 32.9 bits (76), Expect = 0.17
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 21/115 (18%)
Query: 13 VAGHAFHSKYIAEAGPKLRSSLDRI-IPAPK-P----RSARWISSSIPEDHWGTPLAQQS 66
VAG AFH++++A A KL + + PK + R ++S L Q
Sbjct: 197 VAG-AFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVASG---TEVLDRLVGQ- 251
Query: 67 SPAYHVNNLLSPVLFYEALQHVPENAV--VIEIAPHALLQAIIKRAKPGAVSIGL 119
+ +PV + ++ E V +IE+ P L + KRA PG ++ L
Sbjct: 252 --------VANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLAL 298
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.69
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 29 KLRSSLDRIIPAPKPRSARWISSSI 53
KL++SL P A I +++
Sbjct: 24 KLQASLKLYADDSAPALA--IKATM 46
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken
structural genomics/proteomics initiative, RSGI; 1.30A
{Thermus thermophilus} SCOP: d.58.10.1
Length = 88
Score = 28.3 bits (64), Expect = 1.3
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 207 LSGHAI---DGRILFPATGTEEAVEHFLQKIESIPR 239
LSG+A DGR+ A G +EA+E FL ++ PR
Sbjct: 30 LSGYAENLPDGRVEVVAEGPKEALELFLHHLKQGPR 65
>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase;
1.70A {Aeropyrum pernix} PDB: 3p1z_A
Length = 190
Score = 29.6 bits (66), Expect = 1.4
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 302 KEQLDLPELTPAISSEMLELSSADVYKDLRLRGY 335
E I+ L L +A VY DLR +G
Sbjct: 84 GETRGWAAAVEVIAGLGLSLDTALVYFDLRRKGR 117
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus
solfataricus} PDB: 2bje_A 1y9o_A
Length = 101
Score = 27.6 bits (62), Expect = 2.4
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 207 LSGHAI---DGRILFPATGTEEAVEHFLQKIESIPR 239
+ G+A DG + A G EEA+ L++I+ P
Sbjct: 42 IKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQGPP 77
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose
metabolic process, PFKB family,11206G, PSI-II, NYSGXRC,
structural genomics; HET: ATP; 1.79A {Escherichia coli
O6} PDB: 3k9e_A
Length = 330
Score = 29.1 bits (66), Expect = 2.8
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 219 PATGTEEAVEHFLQKIESIPRDDEFIALLHEIH 251
T +E F+Q+ + R+ H H
Sbjct: 298 EGTSRLMEIETFIQRHDMSIREAAQEGHHHHHH 330
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB:
2hlt_A 2hlu_A 3br8_A
Length = 91
Score = 27.1 bits (61), Expect = 3.4
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 213 DGRILFPATGTEEAVEHFLQKIESIPR 239
DGR+ A G E A++ F++ +++
Sbjct: 39 DGRVEILAEGPENALQSFVEAVKNGSP 65
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET:
ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A
3zzf_A*
Length = 307
Score = 28.3 bits (64), Expect = 4.6
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 83 EALQHVPENAVVIEIAPHALL 103
E L ++P ++ V I L
Sbjct: 266 ELLDYLPRSSSVAIINVQDLQ 286
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A
{Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A
2w4d_A
Length = 91
Score = 26.8 bits (60), Expect = 5.2
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 207 LSGHAI---DGRILFPATGTEEAVEHFLQKIESIPR 239
++G DG + G EE VE + P
Sbjct: 32 VNGWVRNLPDGSVEAVLEGDEERVEALIGWAHQGPP 67
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis,
amino acid kinase domain GCN5-related acetyltransferase,
GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB:
3zzi_A*
Length = 464
Score = 28.1 bits (63), Expect = 6.1
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 83 EALQHVPENAVVIEIAPHALL 103
E L ++P ++ V I L
Sbjct: 266 ELLDYLPRSSSVAIINVQDLQ 286
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family,
nucleus, phosphoprotein, protein transport; HET: GTP;
2.92A {Homo sapiens}
Length = 1204
Score = 28.1 bits (61), Expect = 6.5
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 355 KLDWTGNWISYIDTMLQFSILGINTRELYL 384
K +W +W + + S G EL +
Sbjct: 125 KREWPQHWPDMLIELDTLSKQGETQTELVM 154
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas
campestris PV}
Length = 467
Score = 28.1 bits (63), Expect = 6.9
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 83 EALQHVPENAVVIEIAPHALL 103
+ L +P + V P L
Sbjct: 278 DLLDRLPLESSVSITRPADLA 298
>3ouz_A Biotin carboxylase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta fold,
cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter
jejuni subsp} PDB: 3ouu_A*
Length = 446
Score = 27.4 bits (62), Expect = 8.5
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 13/38 (34%)
Query: 192 ECVIDVDLSKE-------------EDAYLSGHAIDGRI 216
E V +D+ ++ E L+GH+I+ RI
Sbjct: 305 EMVSGIDIIEQMIKVAEGYALPSQESIKLNGHSIECRI 342
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 27.6 bits (60), Expect = 9.1
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 16 HAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNL 75
+ H+ Y+ E SS + I A + R + + P YH
Sbjct: 176 SSSHNTYLLEDQLTGPSSTEAYIRA-LCKGCRCLELDCWDGPNQEP------IIYHGYTF 228
Query: 76 LSPVLFYEALQHVPENAVVIEIAP 99
S +LF + L+ + + A P
Sbjct: 229 TSKILFCDVLRAIRDYAFKASPYP 252
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.400
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,579,396
Number of extensions: 405331
Number of successful extensions: 862
Number of sequences better than 10.0: 1
Number of HSP's gapped: 848
Number of HSP's successfully gapped: 52
Length of query: 418
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 322
Effective length of database: 4,021,377
Effective search space: 1294883394
Effective search space used: 1294883394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)