RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9441
(418 letters)
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Escherichia coli
[TaxId: 562]}
Length = 235
Score = 45.6 bits (107), Expect = 3e-06
Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 8/117 (6%)
Query: 5 QGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQ 64
+G V H + A KL L +I + +++ +
Sbjct: 115 RGKFMQEAVPEVPSHCALMKPAADKLAVELAKI--TFNAPTVPVVNNVDVKCETNG---- 168
Query: 65 QSSPAYHVNNLLSPVLFYEALQHVPENAV--VIEIAPHALLQAIIKRAKPGAVSIGL 119
+ V L +PV + ++++++ V + E+ P +L + KR + L
Sbjct: 169 DAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRIVDTLTASAL 225
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Streptomyces
coelicolor A3(2) [TaxId: 100226]}
Length = 253
Score = 42.6 bits (99), Expect = 4e-05
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 7 MCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQS 66
A AFH++++A A KL + + PA ++S+
Sbjct: 128 AEAAAVTVAGAFHTRHMAPAVDKLAEAAKALTPADPKV--TYVSNKDGRAVAS----GTE 181
Query: 67 SPAYHVNNLLSPVLFYEALQHVPENAV--VIEIAPHALLQAIIKRAKPGAVSIGL 119
V + +PV + ++ E V +IE+ P L + KRA PG ++ L
Sbjct: 182 VLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLAL 236
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 31.4 bits (70), Expect = 0.14
Identities = 16/79 (20%), Positives = 29/79 (36%)
Query: 224 EEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVSEFELC 283
+ E + ++ L+ + G GYT S A ++A+ E
Sbjct: 122 RQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCK 181
Query: 284 ESGSVAVSGRIRTPEDVSK 302
+V G+I +PE+ K
Sbjct: 182 AGIAVIAEGKIHSPEEAKK 200
>d1ulra_ d.58.10.1 (A:) Acylphosphatase {Thermus thermophilus
[TaxId: 274]}
Length = 87
Score = 27.1 bits (60), Expect = 1.4
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 213 DGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTV 265
DGR+ A G +EA+E FL ++ PR +A + + +G+ V
Sbjct: 38 DGRVEVVAEGPKEALELFLHHLKQGPR----LARVEAVEVQWGEEAGLKGFHV 86
>d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 476
Score = 28.6 bits (63), Expect = 1.4
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 227 VEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTVL 266
E+ + ++ R D F+ E+ T+I+ T+
Sbjct: 375 DEYRTEFTTALQRVDLFMGQFSEVLLTSISTFIKGDLTIA 414
>d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione
synthetase ATP-binding domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 373
Score = 27.5 bits (61), Expect = 3.5
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 228 EHFLQKI--ESIPRDDEFIALLHEIHN 252
+ +L K D EF L ++
Sbjct: 78 DSYLHKTTEALALSDSEFTGKLWSLYL 104
>d1w2ia_ d.58.10.1 (A:) Acylphosphatase {Pyrococcus horikoshii
[TaxId: 53953]}
Length = 90
Score = 25.9 bits (57), Expect = 3.6
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 213 DGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTVL 266
DG + G EE VE + P +A + + +G+ ++
Sbjct: 40 DGSVEAVLEGDEERVEALIGWAHQGPP----LARVTRVEVKWEQPKGEKGFRIV 89
>d1zc6a2 c.55.1.5 (A:122-292) Probable N-acetylglucosamine kinase
CV2896 {Chromobacterium violaceum [TaxId: 536]}
Length = 171
Score = 26.1 bits (57), Expect = 6.5
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 93 VVIEIAP-HALLQAIIKRAKPGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLL 151
+V+ A A++++A A +I +LP L GLG+ L P Q L
Sbjct: 96 LVLSAARVDPEADALLRQAGEDAWAIARALDPQDELPVALCGGLGQALRDWLPPGFRQRL 155
Query: 152 PPVK 155
+
Sbjct: 156 VAPQ 159
>d1p4ea1 a.60.9.1 (A:2-129) Flp recombinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 128
Score = 25.5 bits (55), Expect = 7.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 10 AFDVAGHAFHSKYIAEAGPKLRSSLDRIIPA 40
+FD+ + KY + L +SL ++IPA
Sbjct: 68 SFDIVNKSLQFKYKTQKATILEASLKKLIPA 98
>d1w9pa1 c.1.8.5 (A:39-298,A:361-433) Chitinase 1 {Aspergillus
fumigatus [TaxId: 5085]}
Length = 333
Score = 25.9 bits (56), Expect = 9.1
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 347 SDNKGFTGKLDWTGNWISY 365
+ G TG + + N + Y
Sbjct: 301 VNALGGTGVFEQSQNELDY 319
>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis
[TaxId: 1423]}
Length = 229
Score = 25.8 bits (56), Expect = 9.8
Identities = 14/109 (12%), Positives = 28/109 (25%), Gaps = 18/109 (16%)
Query: 194 VIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNT 253
++ ++ E ++ L A D A + E+
Sbjct: 108 LMSMEEIVAEGYCIANPDCKAAALTEADADLN------------MDDIVAYARVSEL--- 152
Query: 254 NIAGHPYRGYTVLSDNSATHELAVSEFELCESGSVAVSGRIRTPEDVSK 302
P Y S E + E+ ++ G I+ E +
Sbjct: 153 --LQLPIF-YLEYSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQ 198
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.400
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,579,523
Number of extensions: 73969
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 13
Length of query: 418
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 330
Effective length of database: 1,199,356
Effective search space: 395787480
Effective search space used: 395787480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)