BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9443
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 45/61 (73%)
Query: 1 MAAVGLSWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSG 60
MAAVGLSWEE K R P +V ACHN+ D+VTISGP A + +FV +L EGVFAK+V + G
Sbjct: 222 MAAVGLSWEECKQRCPPGVVPACHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTGG 281
Query: 61 F 61
Sbjct: 282 M 282
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 45/61 (73%)
Query: 1 MAAVGLSWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSG 60
MAAVGLSWEE K R P +V ACHN+ D+VTISGP A + +FV +L EGVFAK+V + G
Sbjct: 622 MAAVGLSWEECKQRCPPGVVPACHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTGG 681
Query: 61 F 61
Sbjct: 682 M 682
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 1 MAAVGLSWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSG 60
MAAVGLSWEE K R P IV ACHN+ D+VTISGP AA+ +F+ +L E VF K+V + G
Sbjct: 620 MAAVGLSWEECKQRCPPGIVPACHNSKDTVTISGPQAAMSEFLQQLKREDVFVKEVRTGG 679
Query: 61 F 61
Sbjct: 680 I 680
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 60 GFTGKLDWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKALVETLSGDKK 119
G G+L W +W+S++D ML SIL LYLPTR + IDP H+ + TL +
Sbjct: 1017 GNRGRLQWNDSWVSFLDAMLHMSILAPGQLGLYLPTRFTSIRIDPVTHRQKLYTLQDTTQ 1076
Query: 120 TVPVAMYR 127
V + R
Sbjct: 1077 AADVVVDR 1084
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|B Chain B, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|C Chain C, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|D Chain D, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
Length = 433
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 1 MAAVGLSWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSG 60
MAAVGLSWEE K R P +V A HN+ D+VTISGP A + +FV +L EGVFAK+V + G
Sbjct: 222 MAAVGLSWEECKQRCPPGVVPAXHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTGG 281
Query: 61 F 61
Sbjct: 282 M 282
>pdb|3TZW|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Orthorhombic Apoform At 2.6 A
pdb|3TZX|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZX|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZY|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZY|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZZ|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
pdb|3TZZ|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
Length = 491
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 32 ISGPPAAIDKFVAELSAEGVFAKKVASSG--FTGKLD 66
I GPP +D +A AEG FA+K A+ G T ++D
Sbjct: 307 IGGPPEQVDAILARAEAEGKFARKFATKGASHTSQMD 343
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 1 MAAVGLSWEEVKARA---PADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKV 56
MAAV L V+ R + A N SV +SG P A+ F + +AEG+ + +
Sbjct: 664 MAAVALGEAAVRERLRPWQDRLSVAAVNGPRSVVVSGEPGALRAFSEDCAAEGIRVRDI 722
>pdb|3HRP|A Chain A, Crystal Structure Of Structural Genomics Protein Of
Unknown Function (np_812590.1) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.70 A Resolution
Length = 409
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 59 SGFTGK-----LDWTGNWISYIDTMLQFSILGINTRELYLPTRMQ 98
S F+GK LD T W+ ++D+ F + T+E+ L +++
Sbjct: 215 STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE 259
>pdb|2F06|A Chain A, Crystal Structure Of Protein Bt0572 From Bacteroides
Thetaiotaomicron
pdb|2F06|B Chain B, Crystal Structure Of Protein Bt0572 From Bacteroides
Thetaiotaomicron
Length = 144
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 25 NNVDSVTISGP--PAAIDKFVAELSAEGVF 52
N D V IS P P A+ K + LSAEGVF
Sbjct: 70 NITDVVGISCPNVPGALAKVLGFLSAEGVF 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,708,030
Number of Sequences: 62578
Number of extensions: 130820
Number of successful extensions: 291
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 10
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)