Query psy9443
Match_columns 127
No_of_seqs 176 out of 1426
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 19:29:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00698 Acyl_transf_1: Acyl t 99.7 4.1E-17 8.8E-22 126.1 5.8 115 1-115 130-256 (318)
2 smart00827 PKS_AT Acyl transfe 99.7 2.2E-16 4.7E-21 120.3 6.4 116 1-116 128-259 (298)
3 TIGR03131 malonate_mdcH malona 99.6 7.9E-16 1.7E-20 117.6 7.4 116 1-116 123-253 (295)
4 KOG1202|consensus 99.6 5.2E-15 1.1E-19 128.0 9.4 58 1-58 629-686 (2376)
5 TIGR02816 pfaB_fam PfaB family 99.6 2.9E-15 6.3E-20 123.1 6.8 116 1-117 330-465 (538)
6 TIGR02813 omega_3_PfaA polyket 99.6 5E-15 1.1E-19 137.4 7.4 117 1-117 723-858 (2582)
7 PLN02752 [acyl-carrier protein 99.6 6.8E-15 1.5E-19 115.0 6.9 117 1-117 172-311 (343)
8 COG0331 FabD (acyl-carrier-pro 99.6 1.3E-15 2.7E-20 118.0 2.2 117 1-117 133-268 (310)
9 TIGR00128 fabD malonyl CoA-acy 99.5 2.1E-14 4.5E-19 109.0 6.3 117 1-117 131-265 (290)
10 KOG2926|consensus 99.2 1.1E-11 2.4E-16 96.1 4.8 113 5-117 199-335 (386)
11 COG3321 Polyketide synthase mo 99.1 4.5E-11 9.6E-16 105.1 3.5 117 1-117 656-788 (1061)
12 PF09383 NIL: NIL domain; Int 78.6 5.5 0.00012 24.1 4.2 27 30-56 50-76 (76)
13 PF08753 NikR_C: NikR C termin 63.1 17 0.00038 22.3 3.9 31 28-58 45-76 (78)
14 PF03958 Secretin_N: Bacterial 59.3 23 0.0005 21.2 4.0 33 17-49 44-76 (82)
15 COG1054 Predicted sulfurtransf 58.8 15 0.00034 28.7 3.7 87 17-113 37-126 (308)
16 PF13312 DUF4081: Domain of un 58.5 28 0.00062 23.0 4.5 40 17-56 11-50 (107)
17 PRK01415 hypothetical protein; 57.1 17 0.00036 27.6 3.6 95 17-124 37-134 (247)
18 PF13117 Cag12: Cag pathogenic 54.0 28 0.00062 23.3 4.0 36 19-54 73-108 (113)
19 PRK05320 rhodanese superfamily 53.5 42 0.00092 25.4 5.4 31 17-49 35-65 (257)
20 PLN02590 probable tyrosine dec 53.4 24 0.00052 29.8 4.3 70 6-78 269-343 (539)
21 PF07302 AroM: AroM protein; 51.9 98 0.0021 23.2 6.9 60 5-64 37-101 (221)
22 cd02394 vigilin_like_KH K homo 49.5 24 0.00051 20.1 2.8 20 27-46 42-61 (62)
23 COG3964 Predicted amidohydrola 47.4 58 0.0013 26.0 5.3 72 8-83 199-271 (386)
24 PF13812 PPR_3: Pentatricopept 43.9 28 0.0006 16.7 2.2 21 32-52 13-33 (34)
25 PRK14450 acylphosphatase; Prov 40.8 92 0.002 19.6 4.8 19 30-48 45-63 (91)
26 PRK10560 hofQ outer membrane p 38.0 1.1E+02 0.0024 24.5 5.8 45 7-51 102-150 (386)
27 cd06216 FNR_iron_sulfur_bindin 37.6 50 0.0011 24.1 3.5 30 28-58 211-240 (243)
28 PRK14445 acylphosphatase; Prov 37.4 41 0.0009 21.2 2.7 20 29-48 45-64 (91)
29 cd06187 O2ase_reductase_like T 37.1 36 0.00078 24.3 2.7 30 27-56 190-219 (224)
30 TIGR03799 NOD_PanD_pyr putativ 36.9 71 0.0015 26.8 4.7 97 6-105 247-350 (522)
31 PRK14449 acylphosphatase; Prov 36.8 73 0.0016 20.0 3.8 26 24-49 36-64 (90)
32 PRK14430 acylphosphatase; Prov 36.5 81 0.0018 20.0 4.0 25 24-48 37-64 (92)
33 PRK14438 acylphosphatase; Prov 36.2 45 0.00098 21.1 2.7 25 24-48 36-63 (91)
34 PF13113 DUF3970: Protein of u 35.9 48 0.001 19.6 2.5 20 29-48 3-22 (60)
35 PRK14447 acylphosphatase; Prov 35.6 48 0.001 21.2 2.8 19 30-48 47-65 (95)
36 PRK14431 acylphosphatase; Prov 35.5 71 0.0015 20.1 3.5 26 24-49 35-62 (89)
37 cd06214 PA_degradation_oxidore 35.5 54 0.0012 23.7 3.4 27 27-53 206-232 (241)
38 PF13918 PLDc_3: PLD-like doma 35.4 93 0.002 22.5 4.5 96 25-126 70-172 (177)
39 COG1104 NifS Cysteine sulfinat 35.4 1.3E+02 0.0029 24.4 5.8 86 6-104 129-217 (386)
40 PRK06724 hypothetical protein; 34.9 47 0.001 22.0 2.8 22 33-54 71-92 (128)
41 PRK00630 nickel responsive reg 34.7 97 0.0021 21.7 4.4 32 29-60 110-142 (148)
42 PRK09028 cystathionine beta-ly 34.5 1.1E+02 0.0024 24.6 5.3 44 7-52 135-178 (394)
43 PRK14433 acylphosphatase; Prov 34.3 80 0.0017 19.8 3.6 20 29-48 42-61 (87)
44 COG4009 Uncharacterized protei 34.3 97 0.0021 19.6 3.8 35 18-52 39-75 (88)
45 cd06185 PDR_like Phthalate dio 34.1 47 0.001 23.5 2.9 31 27-57 176-206 (211)
46 PF05678 VQ: VQ motif; InterP 33.7 50 0.0011 16.8 2.1 17 101-117 9-25 (31)
47 PRK11895 ilvH acetolactate syn 33.7 58 0.0012 23.1 3.2 26 26-51 116-143 (161)
48 PRK14428 acylphosphatase; Prov 33.7 87 0.0019 20.2 3.8 25 24-48 41-68 (97)
49 PF05705 DUF829: Eukaryotic pr 33.6 96 0.0021 22.5 4.5 42 36-77 194-235 (240)
50 cd06217 FNR_iron_sulfur_bindin 33.3 42 0.00091 24.2 2.5 30 27-56 201-230 (235)
51 KOG3445|consensus 33.1 1.4E+02 0.003 20.9 4.8 59 19-77 71-133 (145)
52 PRK04460 nickel responsive reg 32.9 97 0.0021 21.3 4.1 31 29-59 99-130 (137)
53 PRK14444 acylphosphatase; Prov 32.8 1E+02 0.0022 19.5 4.0 20 29-48 45-64 (92)
54 PRK14446 acylphosphatase; Prov 32.7 92 0.002 19.6 3.7 26 23-48 34-62 (88)
55 cd06212 monooxygenase_like The 32.4 48 0.001 23.9 2.7 30 28-57 198-227 (232)
56 smart00642 Aamy Alpha-amylase 32.3 52 0.0011 23.1 2.8 22 33-54 66-87 (166)
57 PF10369 ALS_ss_C: Small subun 32.3 33 0.00072 20.9 1.6 42 9-51 17-61 (75)
58 TIGR02793 nikR nickel-responsi 32.2 1E+02 0.0022 20.9 4.1 30 28-57 96-126 (129)
59 PRK14425 acylphosphatase; Prov 32.2 60 0.0013 20.7 2.8 19 30-48 48-66 (94)
60 PRK14420 acylphosphatase; Prov 32.2 58 0.0013 20.5 2.7 26 24-49 35-63 (91)
61 COG0436 Aspartate/tyrosine/aro 32.1 2.7E+02 0.0058 22.3 7.7 107 6-115 151-263 (393)
62 PRK00451 glycine dehydrogenase 31.8 1.1E+02 0.0024 24.5 4.9 45 6-53 192-236 (447)
63 PRK14422 acylphosphatase; Prov 31.7 64 0.0014 20.5 2.9 20 30-49 48-67 (93)
64 cd06198 FNR_like_3 NAD(P) bind 31.7 49 0.0011 23.6 2.6 30 27-56 181-210 (216)
65 PRK14429 acylphosphatase; Prov 31.6 1.1E+02 0.0023 19.3 3.9 21 29-49 43-63 (90)
66 TIGR00119 acolac_sm acetolacta 31.3 65 0.0014 22.7 3.1 26 26-51 115-142 (157)
67 PRK14436 acylphosphatase; Prov 30.9 66 0.0014 20.3 2.8 20 29-48 45-64 (91)
68 PRK14421 acylphosphatase; Prov 30.3 70 0.0015 20.7 2.9 19 30-48 46-64 (99)
69 TIGR01324 cysta_beta_ly_B cyst 30.2 1.3E+02 0.0029 23.9 5.1 43 9-53 126-168 (377)
70 PF07949 YbbR: YbbR-like prote 30.2 75 0.0016 18.5 2.9 26 17-42 14-40 (82)
71 PRK02967 nickel responsive reg 30.2 1.1E+02 0.0025 21.0 4.1 31 28-58 98-129 (139)
72 PF04748 Polysacc_deac_2: Dive 29.9 86 0.0019 23.1 3.7 48 4-54 69-123 (213)
73 PLN02880 tyrosine decarboxylas 29.8 1.2E+02 0.0025 25.2 4.8 56 6-64 221-280 (490)
74 PF00708 Acylphosphatase: Acyl 29.8 94 0.002 19.3 3.4 27 23-49 36-65 (91)
75 PRK14439 acylphosphatase; Prov 29.8 1E+02 0.0022 22.0 3.8 22 29-50 116-137 (163)
76 COG4954 Uncharacterized protei 29.7 80 0.0017 21.1 3.1 23 30-52 59-81 (135)
77 COG2179 Predicted hydrolase of 29.6 1.2E+02 0.0025 22.0 4.1 73 43-117 20-109 (175)
78 cd06210 MMO_FAD_NAD_binding Me 28.9 51 0.0011 23.8 2.4 26 28-53 202-227 (236)
79 PF03130 HEAT_PBS: PBS lyase H 28.8 69 0.0015 15.2 2.1 15 34-48 13-27 (27)
80 PRK14440 acylphosphatase; Prov 28.8 1.2E+02 0.0025 19.2 3.7 20 29-48 44-63 (90)
81 PRK14426 acylphosphatase; Prov 28.8 70 0.0015 20.2 2.7 21 29-49 45-65 (92)
82 cd06194 FNR_N-term_Iron_sulfur 28.6 64 0.0014 23.1 2.8 30 27-56 187-216 (222)
83 PRK08247 cystathionine gamma-s 28.5 1.9E+02 0.0041 22.6 5.7 53 7-64 125-177 (366)
84 PHA02754 hypothetical protein; 28.5 1.1E+02 0.0023 18.2 3.2 26 36-61 17-42 (67)
85 PRK00054 dihydroorotate dehydr 28.4 99 0.0021 22.8 3.9 27 26-52 180-206 (250)
86 PF09875 DUF2102: Uncharacteri 28.3 1.1E+02 0.0023 20.2 3.5 26 30-55 35-63 (104)
87 PRK05939 hypothetical protein; 28.0 1.9E+02 0.004 23.2 5.6 45 7-53 120-164 (397)
88 cd06183 cyt_b5_reduct_like Cyt 27.9 75 0.0016 22.7 3.1 25 28-52 202-227 (234)
89 PF05137 PilN: Fimbrial assemb 27.9 1.3E+02 0.0029 17.5 4.5 43 9-51 4-50 (78)
90 PLN02651 cysteine desulfurase 27.7 1.4E+02 0.003 23.1 4.7 45 6-52 126-170 (364)
91 COG0774 LpxC UDP-3-O-acyl-N-ac 27.6 1.5E+02 0.0033 23.2 4.7 58 28-86 62-123 (300)
92 PRK14451 acylphosphatase; Prov 27.6 77 0.0017 20.0 2.7 20 29-48 44-63 (89)
93 PRK13186 lpxC UDP-3-O-[3-hydro 27.4 1.4E+02 0.003 23.4 4.5 61 25-86 59-122 (295)
94 PF06153 DUF970: Protein of un 26.9 96 0.0021 20.6 3.1 27 36-62 10-36 (109)
95 PRK14443 acylphosphatase; Prov 26.8 1.1E+02 0.0024 19.5 3.4 22 28-49 44-65 (93)
96 PF00128 Alpha-amylase: Alpha 26.8 75 0.0016 23.3 3.0 23 33-55 48-70 (316)
97 cd00322 FNR_like Ferredoxin re 26.6 97 0.0021 21.8 3.4 26 27-52 191-216 (223)
98 PRK13238 tnaA tryptophanase/L- 26.5 1.8E+02 0.0039 23.9 5.4 49 6-54 161-215 (460)
99 PRK14442 acylphosphatase; Prov 26.4 89 0.0019 19.7 2.9 19 30-48 46-64 (91)
100 cd06184 flavohem_like_fad_nad_ 26.4 57 0.0012 23.8 2.2 30 27-56 209-238 (247)
101 CHL00100 ilvH acetohydroxyacid 26.4 88 0.0019 22.4 3.1 25 27-51 117-143 (174)
102 PRK14427 acylphosphatase; Prov 26.4 1.2E+02 0.0027 19.2 3.6 26 24-49 39-67 (94)
103 PRK14423 acylphosphatase; Prov 26.3 1.7E+02 0.0038 18.4 4.7 20 29-48 46-65 (92)
104 COG4816 EutL Ethanolamine util 26.3 1.6E+02 0.0036 21.6 4.4 32 17-48 169-206 (219)
105 cd06502 TA_like Low-specificit 26.0 1.5E+02 0.0033 22.3 4.6 45 6-52 108-161 (338)
106 PTZ00142 6-phosphogluconate de 25.9 72 0.0016 26.4 2.9 29 23-52 134-162 (470)
107 TIGR03402 FeS_nifS cysteine de 25.8 3E+02 0.0066 21.2 6.4 46 6-53 124-169 (379)
108 TIGR03234 OH-pyruv-isom hydrox 25.7 2.5E+02 0.0055 20.4 5.7 51 7-57 40-104 (254)
109 cd07255 Glo_EDI_BRP_like_12 Th 25.5 85 0.0019 19.7 2.8 21 33-53 72-92 (125)
110 cd07265 2_3_CTD_N N-terminal d 25.4 1.1E+02 0.0023 19.3 3.2 22 34-55 70-91 (122)
111 PRK09082 methionine aminotrans 25.4 2.6E+02 0.0057 21.8 6.0 46 6-53 151-199 (386)
112 cd04795 SIS SIS domain. SIS (S 25.2 1.1E+02 0.0024 17.9 3.1 24 33-56 57-80 (87)
113 cd08364 FosX FosX, a fosfomyci 25.2 1.4E+02 0.0031 19.3 3.9 25 30-54 70-94 (131)
114 TIGR03531 selenium_SpcS O-phos 25.1 1.3E+02 0.0027 24.9 4.2 48 5-53 188-238 (444)
115 cd06195 FNR1 Ferredoxin-NADP+ 25.0 1E+02 0.0022 22.4 3.4 27 26-52 200-226 (241)
116 PRK14432 acylphosphatase; Prov 24.8 1E+02 0.0022 19.6 2.9 26 24-49 35-64 (93)
117 TIGR03392 FeS_syn_CsdA cystein 24.8 3.2E+02 0.007 21.3 6.4 46 6-53 145-190 (398)
118 PRK14424 acylphosphatase; Prov 24.6 2E+02 0.0043 18.3 4.5 20 29-48 48-67 (94)
119 PF05798 Phage_FRD3: Bacteriop 24.5 83 0.0018 19.2 2.3 38 8-45 11-55 (75)
120 PF12404 DUF3663: Peptidase ; 24.5 1.5E+02 0.0033 18.4 3.5 54 6-59 5-60 (77)
121 TIGR01976 am_tr_V_VC1184 cyste 24.4 1.6E+02 0.0035 22.9 4.6 44 7-52 145-188 (397)
122 PF07859 Abhydrolase_3: alpha/ 24.1 1.2E+02 0.0027 21.0 3.6 39 26-64 166-208 (211)
123 PRK13187 UDP-3-O-[3-hydroxymyr 23.8 2.1E+02 0.0045 22.5 5.0 61 25-86 70-134 (304)
124 PRK14466 ribosomal RNA large s 23.7 1.7E+02 0.0037 23.3 4.6 34 18-51 281-315 (345)
125 PRK08051 fre FMN reductase; Va 23.5 1.1E+02 0.0025 22.1 3.4 29 28-56 195-224 (232)
126 cd06191 FNR_iron_sulfur_bindin 23.5 63 0.0014 23.3 2.0 27 28-54 198-224 (231)
127 PRK07050 cystathionine beta-ly 23.4 2.4E+02 0.0052 22.5 5.4 44 8-53 140-183 (394)
128 PF03808 Glyco_tran_WecB: Glyc 23.2 2.7E+02 0.0058 19.4 5.7 53 4-61 54-112 (172)
129 cd03063 TRX_Fd_FDH_beta TRX-li 23.0 1.5E+02 0.0032 18.9 3.4 44 29-74 10-53 (92)
130 PHA00019 IV phage assembly pro 22.8 2.3E+02 0.0049 23.0 5.2 46 6-51 141-194 (428)
131 COG1105 FruK Fructose-1-phosph 22.8 80 0.0017 24.9 2.5 53 6-61 111-169 (310)
132 TIGR03235 DNA_S_dndA cysteine 22.7 2E+02 0.0043 22.0 4.8 46 6-53 126-171 (353)
133 PF01380 SIS: SIS domain SIS d 22.6 2E+02 0.0043 18.3 4.1 24 33-56 63-86 (131)
134 PRK14435 acylphosphatase; Prov 22.4 2.1E+02 0.0046 17.9 4.6 25 24-48 35-62 (90)
135 PRK14448 acylphosphatase; Prov 22.3 2E+02 0.0043 18.0 3.9 25 24-48 35-62 (90)
136 PRK01002 nickel responsive reg 22.3 1.9E+02 0.0041 19.9 4.1 30 29-58 102-132 (141)
137 TIGR00325 lpxC UDP-3-0-acyl N- 22.2 1.9E+02 0.0041 22.7 4.5 61 25-86 58-121 (297)
138 cd06213 oxygenase_e_transfer_s 22.1 84 0.0018 22.6 2.4 27 27-53 193-219 (227)
139 cd06219 DHOD_e_trans_like1 FAD 21.8 1.5E+02 0.0033 21.7 3.8 26 28-53 181-206 (248)
140 PF03446 NAD_binding_2: NAD bi 21.7 1.1E+02 0.0024 21.0 2.9 52 9-61 69-123 (163)
141 TIGR02911 sulfite_red_B sulfit 21.7 86 0.0019 23.4 2.5 32 28-59 191-222 (261)
142 cd06209 BenDO_FAD_NAD Benzoate 21.5 1.3E+02 0.0028 21.5 3.3 29 28-56 194-222 (228)
143 PF00013 KH_1: KH domain syndr 21.5 1.2E+02 0.0026 16.9 2.6 18 28-45 42-59 (60)
144 COG1763 MobB Molybdopterin-gua 21.5 1.4E+02 0.003 21.1 3.3 25 33-57 13-37 (161)
145 cd06215 FNR_iron_sulfur_bindin 21.3 1.4E+02 0.003 21.3 3.4 26 28-53 198-223 (231)
146 PF09363 XFP_C: XFP C-terminal 21.3 2.2E+02 0.0048 21.1 4.4 53 6-58 8-71 (203)
147 cd06196 FNR_like_1 Ferredoxin 21.2 1.4E+02 0.003 21.2 3.4 26 28-53 187-212 (218)
148 PRK14441 acylphosphatase; Prov 20.8 1.9E+02 0.0042 18.2 3.7 25 24-48 38-65 (93)
149 PF07131 DUF1382: Protein of u 20.6 95 0.0021 18.4 1.9 18 42-59 15-32 (61)
150 cd08346 PcpA_N_like N-terminal 20.6 1.2E+02 0.0026 18.7 2.7 20 34-53 82-101 (126)
151 KOG4180|consensus 20.5 1.2E+02 0.0027 24.4 3.1 106 5-117 46-166 (395)
152 PRK15405 ethanolamine utilizat 20.3 2.3E+02 0.0049 21.2 4.3 32 17-48 168-205 (217)
153 COG1254 AcyP Acylphosphatases 20.3 1.4E+02 0.003 19.1 2.8 21 29-49 45-65 (92)
154 PF11823 DUF3343: Protein of u 20.3 2E+02 0.0044 17.0 4.1 26 36-61 11-36 (73)
155 cd05014 SIS_Kpsf KpsF-like pro 20.3 1.5E+02 0.0032 19.0 3.2 25 33-57 57-81 (128)
156 cd00615 Orn_deC_like Ornithine 20.3 1.8E+02 0.0039 21.9 4.0 45 5-52 139-185 (294)
157 PRK08960 hypothetical protein; 20.2 4.2E+02 0.0092 20.6 7.2 58 6-68 153-213 (387)
158 PF14611 SLS: Mitochondrial in 20.1 3.2E+02 0.0069 19.5 5.1 44 18-61 56-101 (210)
159 KOG3360|consensus 20.0 1.3E+02 0.0027 19.7 2.6 28 24-51 41-71 (98)
160 PF01936 NYN: NYN domain; Int 20.0 1.2E+02 0.0026 19.8 2.7 27 30-57 100-126 (146)
No 1
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=99.68 E-value=4.1e-17 Score=126.13 Aligned_cols=115 Identities=25% Similarity=0.227 Sum_probs=93.6
Q ss_pred CeeecCCHHHHHhhCCCCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEEEeeccCccccccccccHHHHHhhh--
Q psy9443 1 MAAVGLSWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSGFTGKLDWTGNWISYIDTM-- 78 (127)
Q Consensus 1 M~av~~~~~~~~~~l~~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~~~~~~~~~~d~l-- 78 (127)
|++|.....+......++++|||+|+|+|+||||+.++++++.+.|+++|++++.|++++|||++.|.+...+|.+.+
T Consensus 130 m~av~~~~~~~~~~~~~~v~ia~~Ns~~q~visG~~~~l~~~~~~l~~~~~~~~~l~v~~afHs~~m~~~~~~~~~~l~~ 209 (318)
T PF00698_consen 130 MLAVRGEEEEEKLALPPDVEIANINSPRQVVISGEREALEALVERLKAEGIKAKRLPVSYAFHSPLMEPAADEFREALES 209 (318)
T ss_dssp EEEEESHHHHHHHHTTTTEEEEEEEETTEEEEEEEHHHHHHHHHHHHHTTSEEEEESSSSETTSGGGHHHHHHHHHHHHT
T ss_pred ccchhhhHHhhhccccccceeeeeccccccccCCCHHHHHHHHHHhhccceeEEEeeeeccccCchhhhhHHHHHhhhhc
Confidence 677776444444445578999999999999999999999999999999999999999999999999887766666554
Q ss_pred -----hhccccccCcccc-----cCceeeeeeEECchhhHHHHhhhc
Q psy9443 79 -----LQFSILGINTREL-----YLPTRMQRVCIDPAKHKALVETLS 115 (127)
Q Consensus 79 -----l~~~v~~~~~~~~-----~~p~~i~~~~~~pv~~~~~v~~~~ 115 (127)
.+.++.++.+... ..+.++.+++++||+|.++++.+.
T Consensus 210 ~~~~~p~ip~~S~~~g~~~~~~~~~~~~~~~~l~~pV~f~~~v~~l~ 256 (318)
T PF00698_consen 210 IEFRPPKIPVYSNVTGRPYDDPELIAEYWARQLRSPVRFREAVEALY 256 (318)
T ss_dssp SCSCCCSSEEEETTTSSBEHSHHHHHHHHHHHHHSHEEHHHHHHHHH
T ss_pred cccccccccceeecccccccccccchhHHHhccCCcCChHHHHHHHH
Confidence 3445566644332 245789999999999999999994
No 2
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=99.65 E-value=2.2e-16 Score=120.33 Aligned_cols=116 Identities=25% Similarity=0.265 Sum_probs=94.2
Q ss_pred CeeecCCHHHHHhhCC---CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEEEeeccCccccccccccHHHHHhh
Q psy9443 1 MAAVGLSWEEVKARAP---ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSGFTGKLDWTGNWISYIDT 77 (127)
Q Consensus 1 M~av~~~~~~~~~~l~---~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~~~~~~~~~~d~ 77 (127)
|++|+++.+++++.+. ..++|||+|+|+++||||+++.++++.+.++.+|+++++|+++++||++.+.+....+..-
T Consensus 128 m~av~~~~~~~~~~l~~~~~~~~ia~~ns~~~~visG~~~~l~~l~~~l~~~~~~~~~L~v~~~fHs~~~~~~~~~~~~~ 207 (298)
T smart00827 128 MLAVGLSEEEVEELLAGYGGRVSVAAVNGPSSVVLSGDEDAVDELAAALEARGIRARRLKVDHAFHSPHMDPILDEFREA 207 (298)
T ss_pred EEEEeCCHHHHHHHHHhcCCcEEEEEEcCCCCEEEECCHHHHHHHHHHHHHCCceEEECCCCCCCchHHHHHHHHHHHHH
Confidence 7889999999999886 3699999999999999999999999999999999999999999999998776543333332
Q ss_pred h-------hhccccccCcccc------cCceeeeeeEECchhhHHHHhhhcC
Q psy9443 78 M-------LQFSILGINTREL------YLPTRMQRVCIDPAKHKALVETLSG 116 (127)
Q Consensus 78 l-------l~~~v~~~~~~~~------~~p~~i~~~~~~pv~~~~~v~~~~~ 116 (127)
+ .+.+++++.+... ..+.++.+++++||+|.++++.+..
T Consensus 208 l~~~~~~~~~~pv~S~~~g~~~~~~~~~~~~~l~~~l~~pV~~~~~i~~l~~ 259 (298)
T smart00827 208 LAGITPRPPRIPFVSTVTGELIDGAELDDAEYWVRNLREPVRFADAVRALLA 259 (298)
T ss_pred HhhCCCCCCCCcEEeCCCCcccCCCCCCCHHHHHHHhhccEeHHHHHHHHHH
Confidence 2 2345566543222 2277889999999999999999974
No 3
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=99.63 E-value=7.9e-16 Score=117.60 Aligned_cols=116 Identities=20% Similarity=0.186 Sum_probs=93.7
Q ss_pred Cee-ecCCHHHHHhhCC-CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCc-eEEEeeccCccccccccccHHHHHhh
Q psy9443 1 MAA-VGLSWEEVKARAP-ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGV-FAKKVASSGFTGKLDWTGNWISYIDT 77 (127)
Q Consensus 1 M~a-v~~~~~~~~~~l~-~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~-~~~~L~v~~a~h~~~~~~~~~~~~d~ 77 (127)
|++ ++++.+++++++. .+++||++|+|+++||||++++++++.+.|+++|+ ++++|+++++||++.+.+....+...
T Consensus 123 m~av~~~~~~~~~~~l~~~~v~ia~~Nsp~~~visG~~~~l~~l~~~l~~~g~~~~~~l~v~~afHs~~~~~~~~~~~~~ 202 (295)
T TIGR03131 123 MLAVLGLDLAAVEALIAKHGVYLAIINAPDQVVIAGSRAALRAVAELARAAGASRAKRLAVRVPSHTPLLAKAAEQFAEA 202 (295)
T ss_pred EEEEeCCCHHHHHHHHHHcCEEEEEEcCCCCEEEECCHHHHHHHHHHHHhcCCceEEECCCCCCcccHHHHHHHHHHHHH
Confidence 555 4899999999997 36999999999999999999999999999999999 99999999999998877655444443
Q ss_pred h-------hhccccccCcccc-----cCceeeeeeEECchhhHHHHhhhcC
Q psy9443 78 M-------LQFSILGINTREL-----YLPTRMQRVCIDPAKHKALVETLSG 116 (127)
Q Consensus 78 l-------l~~~v~~~~~~~~-----~~p~~i~~~~~~pv~~~~~v~~~~~ 116 (127)
+ .+.+++++.+... ..+.+|.++.+.||+|.++++.+..
T Consensus 203 l~~~~~~~~~ip~~S~~~g~~~~~~~~~~~~~~~~l~~pV~~~~~i~~l~~ 253 (295)
T TIGR03131 203 LAEIPLAAPRLPYLSGIDARLVRDAAQIRDDLARQIATPVDWHDCMQAAYE 253 (295)
T ss_pred HhcCCCCCCCceEEECCCCeecCCHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 2 2345555533322 2357888999999999999999854
No 4
>KOG1202|consensus
Probab=99.59 E-value=5.2e-15 Score=128.02 Aligned_cols=58 Identities=64% Similarity=1.033 Sum_probs=56.6
Q ss_pred CeeecCCHHHHHhhCCCCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEEEeec
Q psy9443 1 MAAVGLSWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVAS 58 (127)
Q Consensus 1 M~av~~~~~~~~~~l~~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v 58 (127)
|+|||++.|++..-++++|.-||+||-.+|+|||+.+.+.++++.|++.|+|++.++.
T Consensus 629 MAAVGLsWEq~~~~~P~~~~paCHNs~D~~TiSGp~a~v~~~v~qL~~~gvFak~V~t 686 (2376)
T KOG1202|consen 629 MAAVGLSWEQCKSRCPPDVVPACHNSKDNVTISGPQASVFAFVEQLRAEGVFAKEVRT 686 (2376)
T ss_pred hhhhcCCHHHHhccCCCcccccccCCCCceEecCChHHHHHHHHHhhhcCeeeeEecC
Confidence 8999999999999999999999999999999999999999999999999999999887
No 5
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=99.58 E-value=2.9e-15 Score=123.10 Aligned_cols=116 Identities=12% Similarity=0.094 Sum_probs=91.6
Q ss_pred CeeecCCHHHHHhhCC--CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEEEeeccCc-----cccccccccHHH
Q psy9443 1 MAAVGLSWEEVKARAP--ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSGF-----TGKLDWTGNWIS 73 (127)
Q Consensus 1 M~av~~~~~~~~~~l~--~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v~~a-----~h~~~~~~~~~~ 73 (127)
|++|+++.++++++|. ++++||++|+ .+|||||+.++++++.+.|+++|+++++|.+.|+ +|+..++.-..+
T Consensus 330 ~avV~a~~~~V~~~L~~~~~V~IAaiN~-~q~VISG~~~Ai~~l~~~L~~~Gi~~r~L~a~HA~pam~~HS~~me~~l~~ 408 (538)
T TIGR02816 330 SFVVRCEAAPIEALLKDFPHAYLAIIQG-DTCVIAGCEAQCKALLAALGKRGIAANRVTAMHTQPALQEHQNVMDFYLQP 408 (538)
T ss_pred ceeecCCHHHHHHHhccCCCeEEEEeCC-CCeEeeCCHHHHHHHHHHHHhCCeeeeeccccccCcccccccHHHHHHHHH
Confidence 5678999999999997 4699999998 7999999999999999999999999999999887 676555543344
Q ss_pred HHhhhh-hccccccCc--c------c----ccCceeeeeeEECchhhHHHHhhhcCC
Q psy9443 74 YIDTML-QFSILGINT--R------E----LYLPTRMQRVCIDPAKHKALVETLSGD 117 (127)
Q Consensus 74 ~~d~ll-~~~v~~~~~--~------~----~~~p~~i~~~~~~pv~~~~~v~~~~~~ 117 (127)
|...+. +.+++++.+ + . ...+.||.++++.||+|.++++.|.++
T Consensus 409 f~~~l~p~ip~iSnvt~tG~~~~~~~~~d~~~ia~yw~~ql~~PVrF~~~I~~L~~~ 465 (538)
T TIGR02816 409 LCAELPMDIKFISAADLLAKNQNSEQAIDSQSIANSIADTFCQTLDFTALIHHAQEQ 465 (538)
T ss_pred HHhhcccCCeeeecccccCcccCCCcCCCHHHHHHHHHHcCCCccCHHHHHHHHHHC
Confidence 443332 556666541 1 1 123568999999999999999999644
No 6
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=99.56 E-value=5e-15 Score=137.39 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=95.2
Q ss_pred CeeecC----CHHHHHhhCC--CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEEEeeccCccccccccccHHHH
Q psy9443 1 MAAVGL----SWEEVKARAP--ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSGFTGKLDWTGNWISY 74 (127)
Q Consensus 1 M~av~~----~~~~~~~~l~--~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~~~~~~~~~ 74 (127)
|+++.+ +.+++++.+. ++|+|||+|+|+|+||||+.++++++.+.|+++|+++++|+|++|||+..|.+...+|
T Consensus 723 M~AV~l~~~~~~~~v~~~l~~~~~V~IA~~NsP~qvVISG~~~ai~~l~~~L~~~Gi~a~~L~Vs~AFHSplm~~a~~~f 802 (2582)
T TIGR02813 723 MYAVILAVVGSPTVIANCIKDFEGVSIANYNSPTQLVIAGVSTQIQIAAKALKEKGFKAIPLPVSGAFHTPLVAHAQKPF 802 (2582)
T ss_pred eEEEEccccccHHHHHHHhccCCCEEEEEEecCCCEEEECCHHHHHHHHHHHHhCCCeEEECCCCCCcCcHHHHHHHHHH
Confidence 666654 4567777775 4799999999999999999999999999999999999999999999998887766666
Q ss_pred Hhhh-------hhccccccCccccc------CceeeeeeEECchhhHHHHhhhcCC
Q psy9443 75 IDTM-------LQFSILGINTRELY------LPTRMQRVCIDPAKHKALVETLSGD 117 (127)
Q Consensus 75 ~d~l-------l~~~v~~~~~~~~~------~p~~i~~~~~~pv~~~~~v~~~~~~ 117 (127)
.+.+ .+..++++.+...+ ++.||.+++++||+|.++|+.|..+
T Consensus 803 ~~~L~~i~~~~P~ipv~SnvtG~~~~~~~~~i~~~~~~ql~~PV~F~~aIe~l~~~ 858 (2582)
T TIGR02813 803 SAAIDKAKFNTPLVPLYSNGTGKLHSNDAAAIKKALKNHMLQSVHFSEQLEAMYAA 858 (2582)
T ss_pred HHHHhhCCCCCCCceEEECCCCeEecCchhhHHHHHHHHhhCeecHHHHHHHHHHC
Confidence 6544 34566777544433 3468999999999999999999643
No 7
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=99.56 E-value=6.8e-15 Score=114.98 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=91.6
Q ss_pred Ceee-cCCHHHHHhhCC---------CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcC-ceEEEeeccCccccccccc
Q psy9443 1 MAAV-GLSWEEVKARAP---------ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEG-VFAKKVASSGFTGKLDWTG 69 (127)
Q Consensus 1 M~av-~~~~~~~~~~l~---------~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g-~~~~~L~v~~a~h~~~~~~ 69 (127)
|++| +++.+++++++. ..++|||+|+|+++||||++++++++.+.++..| +++++|+|+++||++++.+
T Consensus 172 m~av~g~~~~~~~~~l~~~~~~~~~~~~v~IA~~Nsp~~~vIsG~~~~l~~l~~~l~~~~~~~~~~L~v~~pfHsp~m~~ 251 (343)
T PLN02752 172 MVSVIGLDSDKVQELCAAANEEVGEDDVVQIANYLCPGNYAVSGGKKGIDAVEAKAKSFKARMTVRLAVAGAFHTSFMEP 251 (343)
T ss_pred EEEEeCCCHHHHHHHHHHhhhccCCCCeEEEEEEcCCCCEEEECcHHHHHHHHHHHHhcCCceEEECCCCCCcchHHHHH
Confidence 6675 899999998884 2599999999999999999999999999999876 5899999999999887765
Q ss_pred cHHHHHhhh-------hhccccccCcccc-----cCceeeeeeEECchhhHHHHhhhcCC
Q psy9443 70 NWISYIDTM-------LQFSILGINTREL-----YLPTRMQRVCIDPAKHKALVETLSGD 117 (127)
Q Consensus 70 ~~~~~~d~l-------l~~~v~~~~~~~~-----~~p~~i~~~~~~pv~~~~~v~~~~~~ 117 (127)
....+..-+ .+.+++++.+... ..+.++.+++++||+|.++++.+.+.
T Consensus 252 ~~~~l~~~l~~~~~~~p~ipviS~~tg~~~~~~~~~~~~l~~~l~~PV~~~~~i~~l~~~ 311 (343)
T PLN02752 252 AVDALEAALAAVEIRTPRIPVISNVDAQPHSDPATIKKILARQVTSPVQWETTVKTLLEK 311 (343)
T ss_pred HHHHHHHHHhcCCCCCCCceEEEcCCCCccCChHHHHHHHHHHCcCCEEHHHHHHHHHHC
Confidence 433333222 2345666643322 34578899999999999999998643
No 8
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=99.55 E-value=1.3e-15 Score=118.00 Aligned_cols=117 Identities=23% Similarity=0.193 Sum_probs=94.2
Q ss_pred Ceee-cCCHHHHHhhCC--C---CeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCc-eEEEeeccCccccccccccHHH
Q psy9443 1 MAAV-GLSWEEVKARAP--A---DIVAACHNNVDSVTISGPPAAIDKFVAELSAEGV-FAKKVASSGFTGKLDWTGNWIS 73 (127)
Q Consensus 1 M~av-~~~~~~~~~~l~--~---~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~-~~~~L~v~~a~h~~~~~~~~~~ 73 (127)
|+++ |++.++++++|. . .|++||+|+|.|+||||++++++++...|++.|. +..+|+|+++||+.+|.+....
T Consensus 133 Maav~gl~~e~v~~~~~~~~~~~~v~iaN~N~~~QiVIsG~~~ale~a~~~~~~~g~kr~i~l~vs~pfHs~lm~pa~~~ 212 (310)
T COG0331 133 MAAVLGLDDEQVEKACEEAAQGTVVEIANYNSPGQIVISGTKEALEKAAEILKEAGAKRAIPLPVSGPFHSPLMKPAADE 212 (310)
T ss_pred HHHHcCCCHHHHHHHHHHhccCCeEEEeeeCCCCcEEEECCHHHHHHHHHHHHHhhhhhhcccCCCchhhhhhhHHHHHH
Confidence 6675 899999999997 2 4999999999999999999999999999999996 5888999999999888866665
Q ss_pred HHhhh-------hhccccccCcccc-cCc----eeeeeeEECchhhHHHHhhhcCC
Q psy9443 74 YIDTM-------LQFSILGINTREL-YLP----TRMQRVCIDPAKHKALVETLSGD 117 (127)
Q Consensus 74 ~~d~l-------l~~~v~~~~~~~~-~~p----~~i~~~~~~pv~~~~~v~~~~~~ 117 (127)
|-..+ ...++++|.+... ..+ ..+.+++..||+|.+.++.+..+
T Consensus 213 ~~~~l~~~~~~~~~ipvi~n~~~~~~~~~~~i~~~L~~q~~~pVrW~etv~~l~~~ 268 (310)
T COG0331 213 LAEALEKVRFSDPLVPVISNVDAKPVLDGEEIRELLAKQLTSPVRWTETVETLKAD 268 (310)
T ss_pred HHHHHHhcCCCCccceeeeccccccccCHHHHHHHHHHHhcCCeeHHHHHHHHHhc
Confidence 55443 3446667643322 334 45567789999999999999654
No 9
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=99.52 E-value=2.1e-14 Score=108.96 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=92.2
Q ss_pred Ceee-cCCHHHHHhhCC----CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCc-eEEEeeccCccccccccccHHHH
Q psy9443 1 MAAV-GLSWEEVKARAP----ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGV-FAKKVASSGFTGKLDWTGNWISY 74 (127)
Q Consensus 1 M~av-~~~~~~~~~~l~----~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~-~~~~L~v~~a~h~~~~~~~~~~~ 74 (127)
|+++ +.+.+++++.+. ..+.+|++|+|+++||||++++++++.+.|++.|+ +++.|+++++||++.+.+....+
T Consensus 131 m~av~~~~~~~~~~~l~~~~~~~v~ia~~nsp~~~visG~~~~l~~l~~~l~~~~~~~~~~L~v~~~fHs~~l~~~~~~~ 210 (290)
T TIGR00128 131 MAAVIGLDEEQLAQACEEATENDVDLANFNSPGQVVISGTKDGVEAAAALFKEMGAKRAVPLEVSGAFHSRFMKPAAEKF 210 (290)
T ss_pred EEEEeCCCHHHHHHHHHhcCCCcEEEEEECCCCCEEEECCHHHHHHHHHHHHHcCCCeEEEcCCCCCcccHHHHHHHHHH
Confidence 5665 889999999886 24999999999999999999999999999999987 78999999999998777544333
Q ss_pred Hhhh-------hhccccccCccc-----ccCceeeeeeEECchhhHHHHhhhcCC
Q psy9443 75 IDTM-------LQFSILGINTRE-----LYLPTRMQRVCIDPAKHKALVETLSGD 117 (127)
Q Consensus 75 ~d~l-------l~~~v~~~~~~~-----~~~p~~i~~~~~~pv~~~~~v~~~~~~ 117 (127)
.+-+ ...+++++.++. ...+.++.++.+.||+|.++++.+.++
T Consensus 211 ~~~l~~~~~~~p~ipi~S~~~g~~~~~~~~~~~~~~~~l~~pV~f~~~i~~l~~~ 265 (290)
T TIGR00128 211 AETLEACQFNDPTVPVISNVDAKPYTNGDRIKEKLSEQLTSPVRWTDSVEKLMAR 265 (290)
T ss_pred HHHHHcCCCCCCCccEEECCCCCccCCHHHHHHHHHHHccCCccHHHHHHHHHHC
Confidence 3322 234555554332 234678999999999999999999644
No 10
>KOG2926|consensus
Probab=99.22 E-value=1.1e-11 Score=96.14 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=87.7
Q ss_pred cCCHHHHHhhCC-----------CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCc-eEEEeeccCccccccccccHH
Q psy9443 5 GLSWEEVKARAP-----------ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGV-FAKKVASSGFTGKLDWTGNWI 72 (127)
Q Consensus 5 ~~~~~~~~~~l~-----------~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~-~~~~L~v~~a~h~~~~~~~~~ 72 (127)
+++..++...|. .-++|||||+|.++||||..++++-+.+--+..++ +.++|.|++|||+..|.+...
T Consensus 199 ~~p~sk~~~~~~~a~~~~~~qe~~~~~VANyl~~~~~VvsG~~~~Le~lee~~~sf~~~r~~~LaVsgAFHTr~MepAve 278 (386)
T KOG2926|consen 199 GLPTSKVQKACASANQLSASQEYPVCEVANYLSPGQRVVSGLVKALESLEENAKSFKIRRMKRLAVSGAFHTRLMEPAVE 278 (386)
T ss_pred cCcHhHHHHHHhhhHHHhhhccCCeeeeeccCCCCcEEeeCcHHHHHHHHHHHHhhhhhhheeeeeccccchhhhhhhHH
Confidence 566677777764 24999999999999999999999999977777777 788999999999877777666
Q ss_pred HHHhhhh-------hccccccCcccc-cCc----eeeeeeEECchhhHHHHhhhcCC
Q psy9443 73 SYIDTML-------QFSILGINTREL-YLP----TRMQRVCIDPAKHKALVETLSGD 117 (127)
Q Consensus 73 ~~~d~ll-------~~~v~~~~~~~~-~~p----~~i~~~~~~pv~~~~~v~~~~~~ 117 (127)
|+-+.+- -+++.+|.++.+ +.| ..+.+++-.||.|.+++..+-..
T Consensus 279 pl~~Al~~vei~~p~~pViSNvdg~~~~~~~hi~~~l~kQ~~rPV~we~~~~ti~sk 335 (386)
T KOG2926|consen 279 PLTKALKAVEIKNPVIPVISNVDGKPYRDPGHILKQLAKQIVRPVQWEQTLKTIYSK 335 (386)
T ss_pred HHHHHHHHHHhcCCCcceeecCCCcccCChHHHHHHHHHHhcCchhHHHHHHHHHhc
Confidence 6666652 346667754432 233 46678899999999999998544
No 11
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.10 E-value=4.5e-11 Score=105.13 Aligned_cols=117 Identities=23% Similarity=0.214 Sum_probs=94.1
Q ss_pred CeeecCCH-HHHHhhCC---CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEEEeeccCccccccccccHHHHHh
Q psy9443 1 MAAVGLSW-EEVKARAP---ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSGFTGKLDWTGNWISYID 76 (127)
Q Consensus 1 M~av~~~~-~~~~~~l~---~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~~~~~~~~~~d 76 (127)
|++|.++. +++.+.+. .++.+|++|+|+++||+|+++++.++..+++.+|++++++.+++++|+..++.-...|..
T Consensus 656 m~~v~~~~~~~~~~~~~~~~~~v~ia~~n~P~~~vi~g~~~~i~~l~~~~~~~~~~~~~~~v~~a~hs~~m~~~~~~~~~ 735 (1061)
T COG3321 656 MLAVELSLLAEVQELLALGRPQVPLAAVNSPQQVVIAGDPEAIAALIARLQAQGVRARRLAVSHAFHSPLMDPILDEFAA 735 (1061)
T ss_pred hhhhhcCccchhhHHhhccccceeEEEecCCceEEecCCHHHHHHHHHHHhccCcccceeeeeeccccHHHHHHHHHHHH
Confidence 67787777 77777665 269999999999999999999999999999999999999999999998777755444444
Q ss_pred hh-------hhccccccCccc-----ccCceeeeeeEECchhhHHHHhhhcCC
Q psy9443 77 TM-------LQFSILGINTRE-----LYLPTRMQRVCIDPAKHKALVETLSGD 117 (127)
Q Consensus 77 ~l-------l~~~v~~~~~~~-----~~~p~~i~~~~~~pv~~~~~v~~~~~~ 117 (127)
.+ .+.++.++.+.. ...+.|+.++.++||+|.+++..+.++
T Consensus 736 ~la~i~~~~p~~p~~S~~~~~~~~~~~~d~~yw~~~~r~~v~f~~~i~~~~~~ 788 (1061)
T COG3321 736 ALADLAPRPPQIPLISNVTGDLAGEPGGDAQYWVQHLRQPVRFADAIAAALAD 788 (1061)
T ss_pred HHhhcccCCCCcceeeeeeccccCCcccCHHHHHHHHHhhccHHHHHHHHHhc
Confidence 43 344555553322 334789999999999999999999655
No 12
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=78.63 E-value=5.5 Score=24.06 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=22.3
Q ss_pred eEEeCcHHHHHHHHHHHhhcCceEEEe
Q psy9443 30 VTISGPPAAIDKFVAELSAEGVFAKKV 56 (127)
Q Consensus 30 ~vvsG~~~~i~~~~~~l~~~g~~~~~L 56 (127)
+-+.|+.+++++..+.|+++|+....|
T Consensus 50 l~l~g~~~~~~~a~~~L~~~~v~vEvl 76 (76)
T PF09383_consen 50 LELPGDDEEIEKAIAYLREQGVEVEVL 76 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHCCCeEEEC
Confidence 346899999999999999999987654
No 13
>PF08753 NikR_C: NikR C terminal nickel binding domain; InterPro: IPR014864 NikR is a transcription factor that regulates nickel uptake. It consists of two dimeric DNA binding domains separated by a tetrameric regulatory domain that binds nickel. This protein corresponds to the C-terminal regulatory domain which contains four nickel binding sites at the tetramer interface []. ; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 2WVB_B 2WVD_C 3QSI_B 3LGH_A 2CAD_A ....
Probab=63.10 E-value=17 Score=22.32 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=25.3
Q ss_pred CceEEeCcHHHHHHHHHHHhhc-CceEEEeec
Q psy9443 28 DSVTISGPPAAIDKFVAELSAE-GVFAKKVAS 58 (127)
Q Consensus 28 ~~~vvsG~~~~i~~~~~~l~~~-g~~~~~L~v 58 (127)
.-+++-|+.+.|.+|.++|... |++..+|.+
T Consensus 45 Evivv~G~~~~I~~l~~~l~~~kGV~~~~l~~ 76 (78)
T PF08753_consen 45 EVIVVRGPADRIKELAEKLRSLKGVKHVKLSL 76 (78)
T ss_dssp EEEEEEEEHHHHHHHHHHHHTSTTEEEEEEEE
T ss_pred EEEEEEcCHHHHHHHHHHHhccCCeeEEEEEE
Confidence 3478999999999999999874 777776653
No 14
>PF03958 Secretin_N: Bacterial type II/III secretion system short domain; InterPro: IPR005644 This is a group of NolW-like proteins, which are closely related to bacterial type II and III secretion system protein (IPR004846 from INTERPRO).; PDB: 3EZJ_C 2Y3M_A 3OSS_D.
Probab=59.33 E-value=23 Score=21.24 Aligned_cols=33 Identities=9% Similarity=0.225 Sum_probs=28.9
Q ss_pred CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhc
Q psy9443 17 ADIVAACHNNVDSVTISGPPAAIDKFVAELSAE 49 (127)
Q Consensus 17 ~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~ 49 (127)
..+.|.....-++++|.|+++.++.+.+.++..
T Consensus 44 ~~~~i~~d~~tNsliv~g~~~~~~~i~~li~~L 76 (82)
T PF03958_consen 44 SSGRIVADERTNSLIVRGTPEDLEQIRELIKQL 76 (82)
T ss_dssp TTTEEEEECTTTEEEEEEEHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCEEEEEeCHHHHHHHHHHHHHH
Confidence 368999999999999999999999998887753
No 15
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=58.83 E-value=15 Score=28.74 Aligned_cols=87 Identities=21% Similarity=0.270 Sum_probs=49.6
Q ss_pred CCeEEEE--eeCCCceEEeCcHHHHHHHHHHHhhc-CceEEEeeccCccccccccccHHHHHhhhhhccccccCcccccC
Q psy9443 17 ADIVAAC--HNNVDSVTISGPPAAIDKFVAELSAE-GVFAKKVASSGFTGKLDWTGNWISYIDTMLQFSILGINTRELYL 93 (127)
Q Consensus 17 ~~v~iA~--~N~p~~~vvsG~~~~i~~~~~~l~~~-g~~~~~L~v~~a~h~~~~~~~~~~~~d~ll~~~v~~~~~~~~~~ 93 (127)
+.+.||. +| -+|||+.++++++.+.|.+. |..-..++.+.+.++++|. -.+.+.+.+..+.+ .....
T Consensus 37 GrillA~EGIN----gtvsG~~e~~~~~~~~l~a~~~f~~l~~K~s~~~~~pF~r-~kVk~kkEIV~lg~-----~ddv~ 106 (308)
T COG1054 37 GRILLAHEGIN----GTVSGSAEAIEAYMAWLRADPGFADLRFKISEADEKPFWR-LKVKLKKEIVALGV-----EDDVD 106 (308)
T ss_pred eEEEEccCCcc----eeEecCHHHHHHHHHHHHhCcccccceeeeccccCCCcce-EEEeehhhheecCC-----CCCcC
Confidence 4567763 45 57899999999999999987 4455556677766544333 11222222222111 11233
Q ss_pred ceeeeeeEECchhhHHHHhh
Q psy9443 94 PTRMQRVCIDPAKHKALVET 113 (127)
Q Consensus 94 p~~i~~~~~~pv~~~~~v~~ 113 (127)
|.......++|..|-..+..
T Consensus 107 p~~~vG~yl~p~~wn~~l~D 126 (308)
T COG1054 107 PLENVGTYLSPKDWNELLSD 126 (308)
T ss_pred ccccccCccCHHHHHHHhcC
Confidence 44455556677666655543
No 16
>PF13312 DUF4081: Domain of unknown function (DUF4081)
Probab=58.49 E-value=28 Score=23.03 Aligned_cols=40 Identities=20% Similarity=0.386 Sum_probs=34.1
Q ss_pred CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEEEe
Q psy9443 17 ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKV 56 (127)
Q Consensus 17 ~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L 56 (127)
+.+.-+|+.|.+-+=+.|+.++++.|.+++..+|-++.-+
T Consensus 11 g~l~slc~~GaNlVPv~~~~~~~~afA~~a~~~~Rr~sSi 50 (107)
T PF13312_consen 11 GPLESLCWAGANLVPVGGDPAAARAFADRARRRGRRCSSI 50 (107)
T ss_pred CcEEEEEEEcCceEEecCCHHHHHHHHHHHHhcCCCcccc
Confidence 4578889999998889999999999999999988766443
No 17
>PRK01415 hypothetical protein; Validated
Probab=57.14 E-value=17 Score=27.64 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=48.1
Q ss_pred CCeEEEE--eeCCCceEEeCcHHHHHHHHHHHhhcC-ceEEEeeccCccccccccccHHHHHhhhhhccccccCcccccC
Q psy9443 17 ADIVAAC--HNNVDSVTISGPPAAIDKFVAELSAEG-VFAKKVASSGFTGKLDWTGNWISYIDTMLQFSILGINTRELYL 93 (127)
Q Consensus 17 ~~v~iA~--~N~p~~~vvsG~~~~i~~~~~~l~~~g-~~~~~L~v~~a~h~~~~~~~~~~~~d~ll~~~v~~~~~~~~~~ 93 (127)
+.+.||. +| .++||+.++++++.+.|++.. ..-...+.+.+..++ |..-.+.+-..+..+.+ . ...
T Consensus 37 G~i~la~EGIN----~tisg~~~~~~~~~~~l~~~~~~~~~~~k~s~~~~~~-F~~l~vr~k~eiV~~g~---~---~~~ 105 (247)
T PRK01415 37 GTILLANEGFN----GSFSGSYENVNLVLEELIKLTGPKDVNVKINYSDVHP-FQKLKVRLKKEIVAMNV---D---DLN 105 (247)
T ss_pred eEEEEccCccc----eEeeCCHHHHHHHHHHHHhCcCCCCceeecccccCCC-CCccEEEeeceEEecCC---C---CCC
Confidence 4566663 34 689999999999999998742 222223333322211 11111111112212111 0 122
Q ss_pred ceeeeeeEECchhhHHHHhhhcCCCceeeEE
Q psy9443 94 PTRMQRVCIDPAKHKALVETLSGDKKTVPVA 124 (127)
Q Consensus 94 p~~i~~~~~~pv~~~~~v~~~~~~~~~~~~~ 124 (127)
|...+...++|..|.+.++. ++...|+||
T Consensus 106 ~~~~~g~~i~p~e~~~ll~~--~~~vvIDVR 134 (247)
T PRK01415 106 VDLFKGEYIEPKDWDEFITK--QDVIVIDTR 134 (247)
T ss_pred ccccCccccCHHHHHHHHhC--CCcEEEECC
Confidence 44345566888888777753 334445554
No 18
>PF13117 Cag12: Cag pathogenicity island protein Cag12
Probab=54.04 E-value=28 Score=23.27 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=31.6
Q ss_pred eEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEE
Q psy9443 19 IVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAK 54 (127)
Q Consensus 19 v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~ 54 (127)
+.=|...+++-+|++|+...+.+..+.|++.|+++.
T Consensus 73 ~~yalAH~~~iIv~~~~~~~~~~~K~wL~~nGa~av 108 (113)
T PF13117_consen 73 VFYALAHSAKIIVLTGDGNLFFQYKNWLRKNGATAV 108 (113)
T ss_pred EeeeeeccccEEEEcCCHHHHHHHHHHHHHcCCcee
Confidence 566677788999999999999999999999998753
No 19
>PRK05320 rhodanese superfamily protein; Provisional
Probab=53.46 E-value=42 Score=25.42 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=22.9
Q ss_pred CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhc
Q psy9443 17 ADIVAACHNNVDSVTISGPPAAIDKFVAELSAE 49 (127)
Q Consensus 17 ~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~ 49 (127)
+++.||.-= =+.++||+.+.++.+...++..
T Consensus 35 G~i~ia~eG--iN~t~~g~~~~id~~~~~l~~~ 65 (257)
T PRK05320 35 GTILLAPEG--INLFLAGTREAIDAFYAWLRAD 65 (257)
T ss_pred EEEEEcCCC--ceEEEEeeHHHHHHHHHHHhhC
Confidence 456776311 1367899999999999999874
No 20
>PLN02590 probable tyrosine decarboxylase
Probab=53.38 E-value=24 Score=29.78 Aligned_cols=70 Identities=9% Similarity=0.022 Sum_probs=44.1
Q ss_pred CCHHHHHhhCC----CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEEEeeccCcccccc-ccccHHHHHhhh
Q psy9443 6 LSWEEVKARAP----ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSGFTGKLD-WTGNWISYIDTM 78 (127)
Q Consensus 6 ~~~~~~~~~l~----~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~-~~~~~~~~~d~l 78 (127)
++.+.+++.+. .+....++.+---+|.+|..+.++++.+.+++.|+ .|.|+.|++... +.+....+++.+
T Consensus 269 md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~---WlHVDaA~GG~al~~~~~r~~~~Gi 343 (539)
T PLN02590 269 MPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGI---WLHVDAAYAGNACICPEYRKFIDGI 343 (539)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCC---eEEEecchhhhhhcChhhHHHhcCC
Confidence 56667766663 22223333333445668999999999999999886 688888876533 233334444444
No 21
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=51.95 E-value=98 Score=23.16 Aligned_cols=60 Identities=25% Similarity=0.280 Sum_probs=47.6
Q ss_pred cCCHHHHHhhCC---CCeEEEEeeCCCceEEeCcH--HHHHHHHHHHhhcCceEEEeeccCcccc
Q psy9443 5 GLSWEEVKARAP---ADIVAACHNNVDSVTISGPP--AAIDKFVAELSAEGVFAKKVASSGFTGK 64 (127)
Q Consensus 5 ~~~~~~~~~~l~---~~v~iA~~N~p~~~vvsG~~--~~i~~~~~~l~~~g~~~~~L~v~~a~h~ 64 (127)
|++.++++++-. +.+-+.-.|.-+++++|=.. ..+.+..+.|+++|+....|-..+.|+.
T Consensus 37 gls~~eI~~~aP~~ge~vLvTrL~DG~~V~ls~~~v~~~lq~~i~~le~~G~d~illlCTG~F~~ 101 (221)
T PF07302_consen 37 GLSREEIAALAPEPGEYVLVTRLRDGTQVVLSKKKVEPRLQACIAQLEAQGYDVILLLCTGEFPG 101 (221)
T ss_pred CCCHHHHHHhCCCCCCceeEEEeCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 688999966665 36888888888999998764 4677788899999998888877777653
No 22
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=49.48 E-value=24 Score=20.14 Aligned_cols=20 Identities=35% Similarity=0.684 Sum_probs=16.5
Q ss_pred CCceEEeCcHHHHHHHHHHH
Q psy9443 27 VDSVTISGPPAAIDKFVAEL 46 (127)
Q Consensus 27 p~~~vvsG~~~~i~~~~~~l 46 (127)
.+.++|+|+.+++....+.+
T Consensus 42 ~~~v~I~G~~~~v~~A~~~i 61 (62)
T cd02394 42 SDTITITGPKENVEKAKEEI 61 (62)
T ss_pred CCEEEEEcCHHHHHHHHHHh
Confidence 57799999999988877654
No 23
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=47.39 E-value=58 Score=26.01 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=47.5
Q ss_pred HHHHHhhCC-CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEEEeeccCccccccccccHHHHHhhhhhccc
Q psy9443 8 WEEVKARAP-ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSGFTGKLDWTGNWISYIDTMLQFSI 83 (127)
Q Consensus 8 ~~~~~~~l~-~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~~~~~~~~~~d~ll~~~v 83 (127)
.+|+.+.|. +++---|||+-.+..+.-+ +.+.....++.++|+ ++++++...|..|+-....+...++...+
T Consensus 199 ~dEvlerL~~GDIitHcfngkpn~~l~~d-g~vr~~vrra~erGV---~fD~ghG~asfsf~vAr~aia~GllP~~I 271 (386)
T COG3964 199 MDEVLERLRRGDIITHCFNGKPNTILTDD-GVVRAEVRRARERGV---IFDAGHGRASFSFNVARRAIANGLLPDII 271 (386)
T ss_pred HHHHHHhccCCceeeeeccCCCCCccccc-hhHHHHHHHHHhcce---EEEccCCcceeeHHHHHHHHhcCCCccee
Confidence 467777776 7899999999877766544 567777777888886 46667665555555444444444444443
No 24
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=43.87 E-value=28 Score=16.70 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=17.4
Q ss_pred EeCcHHHHHHHHHHHhhcCce
Q psy9443 32 ISGPPAAIDKFVAELSAEGVF 52 (127)
Q Consensus 32 vsG~~~~i~~~~~~l~~~g~~ 52 (127)
=+|+.+....+.+.+++.|++
T Consensus 13 ~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 13 KAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HCCCHHHHHHHHHHHHHhCCC
Confidence 378889999999999988863
No 25
>PRK14450 acylphosphatase; Provisional
Probab=40.78 E-value=92 Score=19.57 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=17.1
Q ss_pred eEEeCcHHHHHHHHHHHhh
Q psy9443 30 VTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 30 ~vvsG~~~~i~~~~~~l~~ 48 (127)
+.+.|+.++++++.+.|++
T Consensus 45 i~~~G~~~~v~~f~~~l~~ 63 (91)
T PRK14450 45 VVAEGDKDSLLEFLDLLRS 63 (91)
T ss_pred EEEEeCHHHHHHHHHHHhh
Confidence 4689999999999999984
No 26
>PRK10560 hofQ outer membrane porin HofQ; Provisional
Probab=37.98 E-value=1.1e+02 Score=24.47 Aligned_cols=45 Identities=7% Similarity=0.052 Sum_probs=34.9
Q ss_pred CHHHHHhhCC----CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCc
Q psy9443 7 SWEEVKARAP----ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGV 51 (127)
Q Consensus 7 ~~~~~~~~l~----~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~ 51 (127)
+.+++.+.+. +.-.+......+++++.|+++.++.+.+.+++...
T Consensus 102 ~A~el~~~l~~ll~~~g~v~~d~~tNsLiv~~~~~~~~~i~~li~~lD~ 150 (386)
T PRK10560 102 DAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDL 150 (386)
T ss_pred CHHHHHhhhcccccCCcEEEEEcCCCEEEEEcCHHHHHHHHHHHHHhCC
Confidence 4455555443 45678889999999999999999999998887654
No 27
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=37.61 E-value=50 Score=24.07 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=25.6
Q ss_pred CceEEeCcHHHHHHHHHHHhhcCceEEEeec
Q psy9443 28 DSVTISGPPAAIDKFVAELSAEGVFAKKVAS 58 (127)
Q Consensus 28 ~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v 58 (127)
..+.++|+..-++++.+.|++.|+. ..+..
T Consensus 211 ~~vyvcGp~~m~~~~~~~l~~~Gv~-~~i~~ 240 (243)
T cd06216 211 RQVYACGPPGFLDAAEELLEAAGLA-DRLHT 240 (243)
T ss_pred CeEEEECCHHHHHHHHHHHHHCCCc-cceee
Confidence 4788999999999999999999987 66543
No 28
>PRK14445 acylphosphatase; Provisional
Probab=37.45 E-value=41 Score=21.22 Aligned_cols=20 Identities=15% Similarity=0.410 Sum_probs=17.5
Q ss_pred ceEEeCcHHHHHHHHHHHhh
Q psy9443 29 SVTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~ 48 (127)
.+.+.|+.+.|+++.+.|++
T Consensus 45 ei~~qG~~~~l~~f~~~l~~ 64 (91)
T PRK14445 45 EIEAQGSSGMIDELIKQAER 64 (91)
T ss_pred EEEEEECHHHHHHHHHHHHh
Confidence 36689999999999999984
No 29
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=37.08 E-value=36 Score=24.33 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=24.2
Q ss_pred CCceEEeCcHHHHHHHHHHHhhcCceEEEe
Q psy9443 27 VDSVTISGPPAAIDKFVAELSAEGVFAKKV 56 (127)
Q Consensus 27 p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L 56 (127)
..++.++|+..-++.+.+.|++.|+....+
T Consensus 190 ~~~v~vcGp~~~~~~v~~~l~~~G~~~~~i 219 (224)
T cd06187 190 DHDIYICGPPAMVDATVDALLARGAPPERI 219 (224)
T ss_pred cCEEEEECCHHHHHHHHHHHHHcCCCHHHe
Confidence 356889999999999999999988864433
No 30
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=36.90 E-value=71 Score=26.83 Aligned_cols=97 Identities=15% Similarity=0.246 Sum_probs=53.8
Q ss_pred CCHHHHHhhCC----CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEEEeeccCcccccc-ccccHHHHHhhhhh
Q psy9443 6 LSWEEVKARAP----ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSGFTGKLD-WTGNWISYIDTMLQ 80 (127)
Q Consensus 6 ~~~~~~~~~l~----~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~-~~~~~~~~~d~ll~ 80 (127)
++.+.+++.+. .+..+.++.+-.-++..|..+.++++.+.+++.|+ .+.|+.|..... +.+.....++.+..
T Consensus 247 ~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~---~lHVDaA~gg~~~~~~~~r~~l~gle~ 323 (522)
T TIGR03799 247 IDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGC---HFHVDAAWGGATLLSNTYRHLLKGIER 323 (522)
T ss_pred CCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCC---eEEEEchhhhHHHhCHHHHHHhcCchh
Confidence 45667776653 22222222222345679999999999999999886 366777754322 12222233344333
Q ss_pred ccccccCccc-ccCceeeeee-EECch
Q psy9443 81 FSILGINTRE-LYLPTRMQRV-CIDPA 105 (127)
Q Consensus 81 ~~v~~~~~~~-~~~p~~i~~~-~~~pv 105 (127)
...+..+... ++.|.-..-+ ++++.
T Consensus 324 aDSit~d~HK~l~~P~g~G~llvr~~~ 350 (522)
T TIGR03799 324 ADSVTIDAHKQLYVPMGAGMVLFKDPA 350 (522)
T ss_pred CCEEEEChhhcCCcCcccEEEEEeCHH
Confidence 3333333333 6777766665 45553
No 31
>PRK14449 acylphosphatase; Provisional
Probab=36.82 E-value=73 Score=20.01 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=20.8
Q ss_pred eeCCCc---eEEeCcHHHHHHHHHHHhhc
Q psy9443 24 HNNVDS---VTISGPPAAIDKFVAELSAE 49 (127)
Q Consensus 24 ~N~p~~---~vvsG~~~~i~~~~~~l~~~ 49 (127)
-|.++- +.+.|+.++++++.+.|++.
T Consensus 36 ~N~~dG~Vei~~~G~~~~v~~f~~~l~~~ 64 (90)
T PRK14449 36 ENLYDGSVEVVAEGDEENIKELINFIKTG 64 (90)
T ss_pred EECCCCeEEEEEEeCHHHHHHHHHHHhhC
Confidence 455543 66789999999999999874
No 32
>PRK14430 acylphosphatase; Provisional
Probab=36.54 E-value=81 Score=19.99 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=20.0
Q ss_pred eeCCC---ceEEeCcHHHHHHHHHHHhh
Q psy9443 24 HNNVD---SVTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 24 ~N~p~---~~vvsG~~~~i~~~~~~l~~ 48 (127)
.|-++ .+.+.|+.++|+++.+.|+.
T Consensus 37 rN~~dGsVei~~qG~~~~i~~f~~~l~~ 64 (92)
T PRK14430 37 RNRADGTVEVMASGTVRQLEALRAWMEA 64 (92)
T ss_pred EECCCCcEEEEEEcCHHHHHHHHHHHHh
Confidence 45554 36789999999999999954
No 33
>PRK14438 acylphosphatase; Provisional
Probab=36.16 E-value=45 Score=21.08 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=19.9
Q ss_pred eeCCCc---eEEeCcHHHHHHHHHHHhh
Q psy9443 24 HNNVDS---VTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 24 ~N~p~~---~vvsG~~~~i~~~~~~l~~ 48 (127)
-|.++- +++.|++++|+++.+.|++
T Consensus 36 ~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (91)
T PRK14438 36 KNLPNGSVQGCFEGEETDVAALIDWCHH 63 (91)
T ss_pred EECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 455544 5678999999999999973
No 34
>PF13113 DUF3970: Protein of unknown function (DUF3970)
Probab=35.86 E-value=48 Score=19.63 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=18.0
Q ss_pred ceEEeCcHHHHHHHHHHHhh
Q psy9443 29 SVTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~ 48 (127)
|+-|+|..+.|.++...+.+
T Consensus 3 qVRl~G~~eEi~~fi~~~~~ 22 (60)
T PF13113_consen 3 QVRLSGTKEEIEEFIKSFEK 22 (60)
T ss_pred eEEecCCHHHHHHHHHhhhh
Confidence 57799999999999999987
No 35
>PRK14447 acylphosphatase; Provisional
Probab=35.58 E-value=48 Score=21.17 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=16.7
Q ss_pred eEEeCcHHHHHHHHHHHhh
Q psy9443 30 VTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 30 ~vvsG~~~~i~~~~~~l~~ 48 (127)
+++.|+.+.|+++.+.|+.
T Consensus 47 i~~qG~~~~l~~f~~~l~~ 65 (95)
T PRK14447 47 AVLEGPRDAVLKVIEWARV 65 (95)
T ss_pred EEEEeCHHHHHHHHHHHhh
Confidence 4568999999999999984
No 36
>PRK14431 acylphosphatase; Provisional
Probab=35.53 E-value=71 Score=20.14 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=20.3
Q ss_pred eeCCCc--eEEeCcHHHHHHHHHHHhhc
Q psy9443 24 HNNVDS--VTISGPPAAIDKFVAELSAE 49 (127)
Q Consensus 24 ~N~p~~--~vvsG~~~~i~~~~~~l~~~ 49 (127)
-|.++. +.+.|+.++|+++.+.|+..
T Consensus 35 ~N~~dgVei~~qG~~~~l~~f~~~l~~g 62 (89)
T PRK14431 35 QNVDDYVEIYAQGDDADLERFIQGVIEG 62 (89)
T ss_pred EECCCcEEEEEEcCHHHHHHHHHHHhcC
Confidence 344443 55799999999999999974
No 37
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=35.48 E-value=54 Score=23.75 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=22.7
Q ss_pred CCceEEeCcHHHHHHHHHHHhhcCceE
Q psy9443 27 VDSVTISGPPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 27 p~~~vvsG~~~~i~~~~~~l~~~g~~~ 53 (127)
...+.++|+..-++.+.+.|++.|+..
T Consensus 206 ~~~v~icGp~~mv~~v~~~l~~~G~~~ 232 (241)
T cd06214 206 FDEAFLCGPEPMMDAVEAALLELGVPA 232 (241)
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCCCH
Confidence 356889999999999999999888753
No 38
>PF13918 PLDc_3: PLD-like domain
Probab=35.42 E-value=93 Score=22.49 Aligned_cols=96 Identities=10% Similarity=0.179 Sum_probs=52.6
Q ss_pred eCCCceEEeCcHHHHHHHHHHHhhcCceEEEee-ccCccccccccc---cHHHHHhhhhhccccccCcccccCc---eee
Q psy9443 25 NNVDSVTISGPPAAIDKFVAELSAEGVFAKKVA-SSGFTGKLDWTG---NWISYIDTMLQFSILGINTRELYLP---TRM 97 (127)
Q Consensus 25 N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~-v~~a~h~~~~~~---~~~~~~d~ll~~~v~~~~~~~~~~p---~~i 97 (127)
.||.+..=.|.+.+++++.....+..-+. -+. .++..- ..+.. -| |.+|..+....+. |+...- ..+
T Consensus 70 sSPp~~~~~gRT~DldAIl~~I~~A~~fI-~IsVMdY~P~-~~~~~~~~YW-P~ID~ALR~AA~~---R~V~VRlLIS~W 143 (177)
T PF13918_consen 70 SSPPPFCPKGRTLDLDAILSVIDSAKKFI-YISVMDYLPT-SRYSKPNRYW-PVIDDALRRAAIE---RGVKVRLLISCW 143 (177)
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhHhheE-EEEEeecCCe-eecCCCCCcc-hhHHHHHHHHHHH---cCCeEEEEEeec
Confidence 46666666788889999888887765322 122 233321 22222 24 5555544333322 222222 223
Q ss_pred eeeEECchhhHHHHhhhcCCCceeeEEec
Q psy9443 98 QRVCIDPAKHKALVETLSGDKKTVPVAMY 126 (127)
Q Consensus 98 ~~~~~~pv~~~~~v~~~~~~~~~~~~~~~ 126 (127)
.+---.--.|.+.|..++.....|.|++|
T Consensus 144 ~ht~p~~~~fL~SL~~l~~~~~~i~Vk~F 172 (177)
T PF13918_consen 144 KHTDPSMFPFLRSLQALNVGNCSIEVKIF 172 (177)
T ss_pred CCCChhHHHHHHHHHHhCcCCccEEEEEE
Confidence 32222235889999999855666888876
No 39
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=35.37 E-value=1.3e+02 Score=24.44 Aligned_cols=86 Identities=15% Similarity=0.226 Sum_probs=51.7
Q ss_pred CCHHHHHhhCCCC---eEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEEEeeccCccccccccccHHHHHhhhhhcc
Q psy9443 6 LSWEEVKARAPAD---IVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSGFTGKLDWTGNWISYIDTMLQFS 82 (127)
Q Consensus 6 ~~~~~~~~~l~~~---v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~~~~~~~~~~d~ll~~~ 82 (127)
.+.+++++.+.++ |+|-..|+- .|....|+++.+.++++|+.+.. +.--+++.+..+ -..+...
T Consensus 129 v~~e~L~~al~~~T~LVSim~aNnE-----~G~IQpI~ei~~i~k~~~i~fHv-DAvQa~Gkipi~-------~~~~~vD 195 (386)
T COG1104 129 VDLEQLEEALRPDTILVSIMHANNE-----TGTIQPIAEIGEICKERGILFHV-DAVQAVGKIPID-------LEELGVD 195 (386)
T ss_pred EcHHHHHHhcCCCceEEEEEecccC-----eeecccHHHHHHHHHHcCCeEEE-ehhhhcCceecc-------ccccCcc
Confidence 4678899988743 666666654 69999999999999999964432 222233332221 1111223
Q ss_pred ccccCcccccCceeeeeeEECc
Q psy9443 83 ILGINTRELYLPTRMQRVCIDP 104 (127)
Q Consensus 83 v~~~~~~~~~~p~~i~~~~~~p 104 (127)
+++-.....++|..+.-+.+.|
T Consensus 196 ~ls~SaHK~~GpkGiGaLyv~~ 217 (386)
T COG1104 196 LLSFSAHKFGGPKGIGALYVRP 217 (386)
T ss_pred eEEeehhhccCCCceEEEEECC
Confidence 3333344566777777666544
No 40
>PRK06724 hypothetical protein; Provisional
Probab=34.94 E-value=47 Score=21.98 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=19.2
Q ss_pred eCcHHHHHHHHHHHhhcCceEE
Q psy9443 33 SGPPAAIDKFVAELSAEGVFAK 54 (127)
Q Consensus 33 sG~~~~i~~~~~~l~~~g~~~~ 54 (127)
.++.++++++.++|++.|+...
T Consensus 71 v~~~~dvd~~~~~l~~~G~~~~ 92 (128)
T PRK06724 71 AINRKVVDEVAEFLSSTKIKII 92 (128)
T ss_pred cCChHHHHHHHHHHHHCCCEEe
Confidence 4888999999999999998764
No 41
>PRK00630 nickel responsive regulator; Provisional
Probab=34.70 E-value=97 Score=21.65 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=26.2
Q ss_pred ceEEeCcHHHHHHHHHHHhhc-CceEEEeeccC
Q psy9443 29 SVTISGPPAAIDKFVAELSAE-GVFAKKVASSG 60 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~~-g~~~~~L~v~~ 60 (127)
-+++-|+...|++|.++|... |++..+|.+..
T Consensus 110 vivv~G~~~~I~~la~~l~~~kGVk~~kl~~~~ 142 (148)
T PRK00630 110 TIILRGNSFEIQRLQLEIGGLKGVKFAKLTKAS 142 (148)
T ss_pred EEEEEcCHHHHHHHHHHHHhcCCeEEEEEEEec
Confidence 478999999999999999875 78777776543
No 42
>PRK09028 cystathionine beta-lyase; Provisional
Probab=34.47 E-value=1.1e+02 Score=24.64 Aligned_cols=44 Identities=5% Similarity=-0.010 Sum_probs=34.3
Q ss_pred CHHHHHhhCCCCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCce
Q psy9443 7 SWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVF 52 (127)
Q Consensus 7 ~~~~~~~~l~~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~ 52 (127)
+.+++++.+.++..+-..|+|++- .|....++++.+.+++.|+.
T Consensus 135 ~~e~l~~~l~~~TklV~lespsNP--tg~v~dl~~I~~la~~~g~~ 178 (394)
T PRK09028 135 IGEGIRELIRPNTKVLFLESPGSI--TMEVQDVPTLSRIAHEHDIV 178 (394)
T ss_pred CHHHHHHhcCcCceEEEEECCCCC--CCcHHHHHHHHHHHHHcCCE
Confidence 346677777655566667888876 49999999999999998864
No 43
>PRK14433 acylphosphatase; Provisional
Probab=34.35 E-value=80 Score=19.77 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.7
Q ss_pred ceEEeCcHHHHHHHHHHHhh
Q psy9443 29 SVTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~ 48 (127)
.+.+.|+.++|+++.+.|+.
T Consensus 42 ei~~~G~~~~i~~f~~~l~~ 61 (87)
T PRK14433 42 EVVAEGPKEALERLLHWLRR 61 (87)
T ss_pred EEEEEECHHHHHHHHHHHhh
Confidence 36789999999999999984
No 44
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.28 E-value=97 Score=19.57 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=27.6
Q ss_pred CeEEEEeeCCCc--eEEeCcHHHHHHHHHHHhhcCce
Q psy9443 18 DIVAACHNNVDS--VTISGPPAAIDKFVAELSAEGVF 52 (127)
Q Consensus 18 ~v~iA~~N~p~~--~vvsG~~~~i~~~~~~l~~~g~~ 52 (127)
.+.|-++||-++ ++.=-..+.++++..+|++.|++
T Consensus 39 e~aIfnI~gT~Sy~V~Fl~~~~s~eev~~ele~mga~ 75 (88)
T COG4009 39 ELAIFNIEGTSSYYVVFLEEVESEEEVERELEDMGAE 75 (88)
T ss_pred cEEEEEecCceeEEEEEEeccCCHHHHHHHHHHhCch
Confidence 577778888765 55566778899999999999874
No 45
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=34.07 E-value=47 Score=23.50 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=25.5
Q ss_pred CCceEEeCcHHHHHHHHHHHhhcCceEEEee
Q psy9443 27 VDSVTISGPPAAIDKFVAELSAEGVFAKKVA 57 (127)
Q Consensus 27 p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~ 57 (127)
...+.++|+..-++.+.+.|++.|+....+.
T Consensus 176 ~~~vyicGp~~m~~~~~~~l~~~gv~~~~i~ 206 (211)
T cd06185 176 GTHVYVCGPEGMMDAVRAAAAALGWPEARLH 206 (211)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCChhheE
Confidence 3568899999999999999999998655543
No 46
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=33.73 E-value=50 Score=16.82 Aligned_cols=17 Identities=41% Similarity=0.745 Sum_probs=14.4
Q ss_pred EECchhhHHHHhhhcCC
Q psy9443 101 CIDPAKHKALVETLSGD 117 (127)
Q Consensus 101 ~~~pv~~~~~v~~~~~~ 117 (127)
..||.+|+..|++|.+-
T Consensus 9 ~~d~~~Fr~lVQ~LTG~ 25 (31)
T PF05678_consen 9 HTDPSNFRALVQRLTGA 25 (31)
T ss_pred EeCHHHHHHHHHHhHCc
Confidence 47999999999999643
No 47
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=33.72 E-value=58 Score=23.07 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=21.7
Q ss_pred CCCceEE--eCcHHHHHHHHHHHhhcCc
Q psy9443 26 NVDSVTI--SGPPAAIDKFVAELSAEGV 51 (127)
Q Consensus 26 ~p~~~vv--sG~~~~i~~~~~~l~~~g~ 51 (127)
++.++++ +|+++.+++|.+.|+..|+
T Consensus 116 ~~~~~~iE~tG~~~ki~~~~~~l~~~gi 143 (161)
T PRK11895 116 TPESLTIEVTGDSDKIDAFIDLLRPYGI 143 (161)
T ss_pred cCCEEEEEEeCCHHHHHHHHHHhhhcCC
Confidence 4566554 9999999999999999887
No 48
>PRK14428 acylphosphatase; Provisional
Probab=33.71 E-value=87 Score=20.18 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=20.1
Q ss_pred eeCCCc---eEEeCcHHHHHHHHHHHhh
Q psy9443 24 HNNVDS---VTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 24 ~N~p~~---~vvsG~~~~i~~~~~~l~~ 48 (127)
-|.++- +.+.|+.+.++++.+.|+.
T Consensus 41 ~N~~dGsVei~~qG~~~~i~~fi~~l~~ 68 (97)
T PRK14428 41 RNCRDGSVELEAQGSSDAVQALVEQLAI 68 (97)
T ss_pred EECCCCEEEEEEEcCHHHHHHHHHHHhh
Confidence 455544 6678999999999999984
No 49
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=33.56 E-value=96 Score=22.53 Aligned_cols=42 Identities=7% Similarity=-0.069 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhcCceEEEeeccCccccccccccHHHHHhh
Q psy9443 36 PAAIDKFVAELSAEGVFAKKVASSGFTGKLDWTGNWISYIDT 77 (127)
Q Consensus 36 ~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~~~~~~~~~~d~ 77 (127)
.++|+++.++.+++|...+........|..++...-..|.+.
T Consensus 194 ~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~ 235 (240)
T PF05705_consen 194 WRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRA 235 (240)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHH
Confidence 467999999999999988888888777766665544444433
No 50
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=33.27 E-value=42 Score=24.17 Aligned_cols=30 Identities=27% Similarity=0.373 Sum_probs=24.5
Q ss_pred CCceEEeCcHHHHHHHHHHHhhcCceEEEe
Q psy9443 27 VDSVTISGPPAAIDKFVAELSAEGVFAKKV 56 (127)
Q Consensus 27 p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L 56 (127)
...+.++|+..-++++.+.|++.|+...++
T Consensus 201 ~~~v~icGp~~m~~~v~~~l~~~Gv~~~~i 230 (235)
T cd06217 201 GRRVYVCGPPAFVEAATRLLLELGVPRDRI 230 (235)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCHHHE
Confidence 456889999999999999999988754433
No 51
>KOG3445|consensus
Probab=33.10 E-value=1.4e+02 Score=20.86 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=40.9
Q ss_pred eEEEEeeCCCceEEe---CcHHHHHHHHHHHhhc-CceEEEeeccCccccccccccHHHHHhh
Q psy9443 19 IVAACHNNVDSVTIS---GPPAAIDKFVAELSAE-GVFAKKVASSGFTGKLDWTGNWISYIDT 77 (127)
Q Consensus 19 v~iA~~N~p~~~vvs---G~~~~i~~~~~~l~~~-g~~~~~L~v~~a~h~~~~~~~~~~~~d~ 77 (127)
+-.|-|+.-+.-|++ =+.+.|......|+++ |.+.++|.-..-.-.+...+.|.|+...
T Consensus 71 ~lraeY~NGre~vicvrnms~eevs~~~~lL~ds~Gl~v~~lr~~~~t~nPSvqG~WTP~~~~ 133 (145)
T KOG3445|consen 71 LLRAEYLNGRERVICVRNMSQEEVSKKATLLRDSSGLKVVKLRKRVETLNPSVQGQWTPFVKF 133 (145)
T ss_pred eEEEEecCCceEEEeeccCCHHHHHHHHHHHhccCCCcceEecccccccCCcccccccccccc
Confidence 344555555555665 5677888888888876 6677777766555567888899998644
No 52
>PRK04460 nickel responsive regulator; Provisional
Probab=32.90 E-value=97 Score=21.30 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=25.5
Q ss_pred ceEEeCcHHHHHHHHHHHhhc-CceEEEeecc
Q psy9443 29 SVTISGPPAAIDKFVAELSAE-GVFAKKVASS 59 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~~-g~~~~~L~v~ 59 (127)
-+++-|+...|++|.+++... |++..+|.+.
T Consensus 99 vivv~G~~~~I~~L~~~l~~~kGV~~~kl~~~ 130 (137)
T PRK04460 99 VLVLKGKAKEIKKIADRLISTKGVKHGKLVMT 130 (137)
T ss_pred EEEEEcCHHHHHHHHHHHHhcCCeeEEEEEEe
Confidence 378999999999999999875 7777776544
No 53
>PRK14444 acylphosphatase; Provisional
Probab=32.75 E-value=1e+02 Score=19.47 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=17.9
Q ss_pred ceEEeCcHHHHHHHHHHHhh
Q psy9443 29 SVTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~ 48 (127)
.+.+.|+.+.|+++.+.|+.
T Consensus 45 ei~~qG~~~~i~~f~~~l~~ 64 (92)
T PRK14444 45 EAVFEGSRPAVQKMISWCYS 64 (92)
T ss_pred EEEEEcCHHHHHHHHHHHHh
Confidence 46789999999999999984
No 54
>PRK14446 acylphosphatase; Provisional
Probab=32.74 E-value=92 Score=19.63 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=20.7
Q ss_pred EeeCCCc---eEEeCcHHHHHHHHHHHhh
Q psy9443 23 CHNNVDS---VTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 23 ~~N~p~~---~vvsG~~~~i~~~~~~l~~ 48 (127)
.-|.++- +.+.|+.+.++.+.+.|++
T Consensus 34 V~N~~dGsVei~~qG~~~~l~~f~~~l~~ 62 (88)
T PRK14446 34 ARNQADGSVEVVAAGSAAALEALEAWLWQ 62 (88)
T ss_pred EEECCCCCEEEEEEeCHHHHHHHHHHHhh
Confidence 3455555 5678999999999999984
No 55
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=32.36 E-value=48 Score=23.92 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=24.2
Q ss_pred CceEEeCcHHHHHHHHHHHhhcCceEEEee
Q psy9443 28 DSVTISGPPAAIDKFVAELSAEGVFAKKVA 57 (127)
Q Consensus 28 ~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~ 57 (127)
..+.++|+..-++.+.+.|++.|+....+.
T Consensus 198 ~~v~~CGp~~~~~~v~~~l~~~G~~~~~i~ 227 (232)
T cd06212 198 CDVYLCGPPPMIDAALPVLEMSGVPPDQIF 227 (232)
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCHHHee
Confidence 458889999999999999999988655443
No 56
>smart00642 Aamy Alpha-amylase domain.
Probab=32.34 E-value=52 Score=23.10 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=20.0
Q ss_pred eCcHHHHHHHHHHHhhcCceEE
Q psy9443 33 SGPPAAIDKFVAELSAEGVFAK 54 (127)
Q Consensus 33 sG~~~~i~~~~~~l~~~g~~~~ 54 (127)
-|+.++++++++++.++|++..
T Consensus 66 ~Gt~~d~~~lv~~~h~~Gi~vi 87 (166)
T smart00642 66 FGTMEDFKELVDAAHARGIKVI 87 (166)
T ss_pred cCCHHHHHHHHHHHHHCCCEEE
Confidence 4899999999999999999765
No 57
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=32.31 E-value=33 Score=20.89 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=26.5
Q ss_pred HHHHhhCC-CCeEEEEeeCCCceE--EeCcHHHHHHHHHHHhhcCc
Q psy9443 9 EEVKARAP-ADIVAACHNNVDSVT--ISGPPAAIDKFVAELSAEGV 51 (127)
Q Consensus 9 ~~~~~~l~-~~v~iA~~N~p~~~v--vsG~~~~i~~~~~~l~~~g~ 51 (127)
.++.+++. -+..|.-++ |..++ ++|+++.++.+.+.|+..|+
T Consensus 17 ~ei~~l~~~f~a~ivd~~-~~~~iie~tG~~~kid~fi~~l~~~gi 61 (75)
T PF10369_consen 17 SEILQLAEIFRARIVDVS-PDSIIIELTGTPEKIDAFIKLLKPFGI 61 (75)
T ss_dssp HHHHHHHHHTT-EEEEEE-TTEEEEEEEE-HHHHHHHHHHSTGGGE
T ss_pred HHHHHHHHHhCCEEEEEC-CCEEEEEEcCCHHHHHHHHHHhhhcCC
Confidence 34444443 234444444 44444 49999999999999999886
No 58
>TIGR02793 nikR nickel-responsive transcriptional regulator NikR. Three members of the seed for this model, from Escherichia coli, Pseudomonas putida, and Brucella melitensis, are found associated with a nickel ABC transporter operon that acts to import nickel for use as a cofactor in urease or hydrogenase. These proteins, with characterized nickel-binding and DNA-binding domains, act as nickel-responsive transcriptional regulators. In the larger family of full-length homologs, most others both lack proximity to the nickel ABC transporter operon and form a separate clade. Several of the homologs not within the scope of this model, but rather scoring between the trusted and noise cutoffs, have been shown to bind nickel, copper, or both, and to regulate genes in response to nickel.
Probab=32.24 E-value=1e+02 Score=20.94 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=24.3
Q ss_pred CceEEeCcHHHHHHHHHHHhhc-CceEEEee
Q psy9443 28 DSVTISGPPAAIDKFVAELSAE-GVFAKKVA 57 (127)
Q Consensus 28 ~~~vvsG~~~~i~~~~~~l~~~-g~~~~~L~ 57 (127)
.-+++-|+.+.|+++.+++... |++..+|.
T Consensus 96 Evivv~G~~~~I~~l~~~l~~~kGV~~~~l~ 126 (129)
T TIGR02793 96 EVSVLKGDMGDVQHFADHVIAERGVRHGHLQ 126 (129)
T ss_pred EEEEEEcCHHHHHHHHHHHHhcCCeeEEEEE
Confidence 3478999999999999999875 77766654
No 59
>PRK14425 acylphosphatase; Provisional
Probab=32.23 E-value=60 Score=20.69 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=17.4
Q ss_pred eEEeCcHHHHHHHHHHHhh
Q psy9443 30 VTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 30 ~vvsG~~~~i~~~~~~l~~ 48 (127)
+++.|+.+.|+++.+.|+.
T Consensus 48 i~~qG~~~~le~f~~~l~~ 66 (94)
T PRK14425 48 ALIAGPDSAISAMIERFRR 66 (94)
T ss_pred EEEEeCHHHHHHHHHHHhh
Confidence 6789999999999999984
No 60
>PRK14420 acylphosphatase; Provisional
Probab=32.20 E-value=58 Score=20.45 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=20.8
Q ss_pred eeCCCc---eEEeCcHHHHHHHHHHHhhc
Q psy9443 24 HNNVDS---VTISGPPAAIDKFVAELSAE 49 (127)
Q Consensus 24 ~N~p~~---~vvsG~~~~i~~~~~~l~~~ 49 (127)
.|.+.- +.+.|+.++|+++.+.|++.
T Consensus 35 ~N~~dG~Vei~~qG~~~~i~~f~~~l~~~ 63 (91)
T PRK14420 35 KNRDDGTVEIEAEGPEEALQLFLDAIEKG 63 (91)
T ss_pred EECCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 455543 66899999999999999864
No 61
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=32.09 E-value=2.7e+02 Score=22.33 Aligned_cols=107 Identities=15% Similarity=0.101 Sum_probs=62.9
Q ss_pred CCHHHHHhhCCCCeEEEEeeCCCceE-EeCcHHHHHHHHHHHhhcCceEEEeeccCcccccccccc-HHHHHhhhh--hc
Q psy9443 6 LSWEEVKARAPADIVAACHNNVDSVT-ISGPPAAIDKFVAELSAEGVFAKKVASSGFTGKLDWTGN-WISYIDTML--QF 81 (127)
Q Consensus 6 ~~~~~~~~~l~~~v~iA~~N~p~~~v-vsG~~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~~~~~-~~~~~d~ll--~~ 81 (127)
.+.+++++.+..+..+-.+|+|++=| -.=+++.++++.+.+++.|+.. =.+-.++...|++. ..++++--. ..
T Consensus 151 ~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~i---i~DEiY~~l~yd~~~~~s~~~~~~~~~~ 227 (393)
T COG0436 151 PDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIII---ISDEIYEELVYDGAEHPSILELAGARDR 227 (393)
T ss_pred CCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEE---EEehhhhhcccCCCCcCCHhhcCCCcce
Confidence 45778888777666677788888733 4556799999999999988643 23555666666653 333332221 11
Q ss_pred cc-cccCccc-ccCceeeeeeEECchhhHHHHhhhc
Q psy9443 82 SI-LGINTRE-LYLPTRMQRVCIDPAKHKALVETLS 115 (127)
Q Consensus 82 ~v-~~~~~~~-~~~p~~i~~~~~~pv~~~~~v~~~~ 115 (127)
.+ +++-+.. ....-+++-.+.++....+.+.++.
T Consensus 228 ~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~ 263 (393)
T COG0436 228 TITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLK 263 (393)
T ss_pred EEEEecccccccccccceeEeecChHHHHHHHHHHH
Confidence 11 1111111 2233467777767555555555543
No 62
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=31.83 E-value=1.1e+02 Score=24.53 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=34.6
Q ss_pred CCHHHHHhhCCCCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceE
Q psy9443 6 LSWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 6 ~~~~~~~~~l~~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~ 53 (127)
++.+++++.+.++..+..+++|+ .+|..+.++++.+.+++.|+..
T Consensus 192 ~d~~~l~~~i~~~t~~v~l~~pn---~tG~v~~l~~I~~~a~~~~~~~ 236 (447)
T PRK00451 192 TDLEALEAAVDDDTAAVVVQYPN---FFGVIEDLEEIAEIAHAGGALF 236 (447)
T ss_pred CCHHHHHHhcCCCeEEEEEECCC---CCCeeCCHHHHHHHHHHCCCEE
Confidence 45677877776666666777784 2699999999999999998744
No 63
>PRK14422 acylphosphatase; Provisional
Probab=31.68 E-value=64 Score=20.49 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=18.0
Q ss_pred eEEeCcHHHHHHHHHHHhhc
Q psy9443 30 VTISGPPAAIDKFVAELSAE 49 (127)
Q Consensus 30 ~vvsG~~~~i~~~~~~l~~~ 49 (127)
+.+.|+.++|+++.+.|+..
T Consensus 48 i~~~G~~~~i~~f~~~l~~g 67 (93)
T PRK14422 48 VVAEGPRAACEKLLQLLRGD 67 (93)
T ss_pred EEEEcCHHHHHHHHHHHHhC
Confidence 67899999999999999864
No 64
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=31.68 E-value=49 Score=23.59 Aligned_cols=30 Identities=33% Similarity=0.443 Sum_probs=24.7
Q ss_pred CCceEEeCcHHHHHHHHHHHhhcCceEEEe
Q psy9443 27 VDSVTISGPPAAIDKFVAELSAEGVFAKKV 56 (127)
Q Consensus 27 p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L 56 (127)
...+.++|+..-++++.+.|++.|+....+
T Consensus 181 ~~~vyicGp~~m~~~v~~~l~~~Gv~~~~I 210 (216)
T cd06198 181 DADVWFCGPPGMADALEKGLRALGVPARRF 210 (216)
T ss_pred CCeEEEECcHHHHHHHHHHHHHcCCChHhc
Confidence 356889999999999999999988855444
No 65
>PRK14429 acylphosphatase; Provisional
Probab=31.65 E-value=1.1e+02 Score=19.28 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=18.1
Q ss_pred ceEEeCcHHHHHHHHHHHhhc
Q psy9443 29 SVTISGPPAAIDKFVAELSAE 49 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~~ 49 (127)
.+.+.|+.++|+++.+.|++.
T Consensus 43 ei~~qG~~~~i~~f~~~l~~g 63 (90)
T PRK14429 43 EILAQGSDPAVDNLIAWCEVG 63 (90)
T ss_pred EEEEEeCHHHHHHHHHHHhhC
Confidence 366899999999999999853
No 66
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=31.32 E-value=65 Score=22.67 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=21.8
Q ss_pred CCCceEE--eCcHHHHHHHHHHHhhcCc
Q psy9443 26 NVDSVTI--SGPPAAIDKFVAELSAEGV 51 (127)
Q Consensus 26 ~p~~~vv--sG~~~~i~~~~~~l~~~g~ 51 (127)
+|.+.++ +|+++.+++|.+.|+.-|+
T Consensus 115 ~~~~~~ie~tG~~~ki~~~~~~l~~~gi 142 (157)
T TIGR00119 115 SPDSYTVEVTGDSDKIDAFLELLRPFGI 142 (157)
T ss_pred cCCEEEEEEcCCHHHHHHHHHHhhhcCC
Confidence 5666554 9999999999999999886
No 67
>PRK14436 acylphosphatase; Provisional
Probab=30.87 E-value=66 Score=20.34 Aligned_cols=20 Identities=5% Similarity=0.222 Sum_probs=17.7
Q ss_pred ceEEeCcHHHHHHHHHHHhh
Q psy9443 29 SVTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~ 48 (127)
.+.+.|+.+.|+++.+.|++
T Consensus 45 ei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14436 45 EAVLEGDEERVEALIGWAHQ 64 (91)
T ss_pred EEEEEcCHHHHHHHHHHHhh
Confidence 46789999999999999984
No 68
>PRK14421 acylphosphatase; Provisional
Probab=30.26 E-value=70 Score=20.70 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=17.3
Q ss_pred eEEeCcHHHHHHHHHHHhh
Q psy9443 30 VTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 30 ~vvsG~~~~i~~~~~~l~~ 48 (127)
+++.|+.++++++.+.|++
T Consensus 46 i~~~G~~~~i~~f~~~l~~ 64 (99)
T PRK14421 46 ALFAGPADAVAEMIARCRR 64 (99)
T ss_pred EEEeCCHHHHHHHHHHHHh
Confidence 6789999999999999984
No 69
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=30.24 E-value=1.3e+02 Score=23.88 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=34.2
Q ss_pred HHHHhhCCCCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceE
Q psy9443 9 EEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 9 ~~~~~~l~~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~ 53 (127)
+++++.+.++..+...++|.+. .|....++++.+.+++.|+..
T Consensus 126 e~l~~~i~~~tklV~lesp~Np--~g~~~dl~~I~~la~~~g~~l 168 (377)
T TIGR01324 126 EDIATLIQPNTKVLFLEAPSSI--TFEIQDIPAIAKAARNPGIVI 168 (377)
T ss_pred HHHHHhcCCCceEEEEECCCCC--CCcHHHHHHHHHHHHHcCCEE
Confidence 6677777656667777888874 599999999999999988644
No 70
>PF07949 YbbR: YbbR-like protein; InterPro: IPR012505 The members of this family are all hypothetical bacterial proteins of unknown function, and are similar to the YbbR protein expressed by Bacillus subtilis (O34659 from SWISSPROT, O87088 from SWISSPROT). One member (Q97EN2 from SWISSPROT) is annotated as an uncharacterised secreted protein, whereas another member (P43521 from SWISSPROT) is described as a hypothetical protein in the 5,region of the def gene of Thermus thermophilus, which encodes a deformylase [], but no further information was found in either case. This region is found repeated up to four times in many members of this family. ; PDB: 2KXY_A 2KQ1_A.
Probab=30.17 E-value=75 Score=18.55 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=18.7
Q ss_pred CCeEEEEee-CCCceEEeCcHHHHHHH
Q psy9443 17 ADIVAACHN-NVDSVTISGPPAAIDKF 42 (127)
Q Consensus 17 ~~v~iA~~N-~p~~~vvsG~~~~i~~~ 42 (127)
.+..+.... .|..+.|+|+.+.++.+
T Consensus 14 ~gy~v~~~~~~~~~V~v~G~~~~l~~i 40 (82)
T PF07949_consen 14 EGYVVSSISPEPVTVTVSGPESVLDKI 40 (82)
T ss_dssp TTEEEEEEEESEEEEEEEE-HHHHHHH
T ss_pred CCCEEEccEeeeeEEEEEECHHHhccc
Confidence 456565444 89999999999988665
No 71
>PRK02967 nickel responsive regulator; Provisional
Probab=30.16 E-value=1.1e+02 Score=21.02 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=25.2
Q ss_pred CceEEeCcHHHHHHHHHHHhhc-CceEEEeec
Q psy9443 28 DSVTISGPPAAIDKFVAELSAE-GVFAKKVAS 58 (127)
Q Consensus 28 ~~~vvsG~~~~i~~~~~~l~~~-g~~~~~L~v 58 (127)
.-+++-|+.+.|++|.++|... |++..+|.+
T Consensus 98 Evivv~G~~~~I~~l~~~l~~~kGVk~~~l~~ 129 (139)
T PRK02967 98 EVAVLKGDTGDVQHFADDVIAERGVRHGHLQC 129 (139)
T ss_pred EEEEEEcCHHHHHHHHHHHHhcCCeeEEEEEE
Confidence 3478999999999999999875 777766654
No 72
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=29.89 E-value=86 Score=23.06 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=32.7
Q ss_pred ecCCHHHHHhhCC-------CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEE
Q psy9443 4 VGLSWEEVKARAP-------ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAK 54 (127)
Q Consensus 4 v~~~~~~~~~~l~-------~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~ 54 (127)
+++++++++..+. .-+-+-++=|.. ++.+.+.++.+.+.|+++|.++.
T Consensus 69 ~~~~~~~i~~~l~~al~~vp~a~GvnNhmGS~---~T~~~~~m~~vl~~l~~~gl~Fv 123 (213)
T PF04748_consen 69 TGMSEEEIRKRLEAALARVPGAVGVNNHMGSR---FTSDREAMRWVLEVLKERGLFFV 123 (213)
T ss_dssp TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-CC---HHC-HHHHHHHHHHHHHTT-EEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEecCCCcc---ccCCHHHHHHHHHHHHHcCCEEE
Confidence 4678888887774 235555555544 88999999999999999998664
No 73
>PLN02880 tyrosine decarboxylase
Probab=29.81 E-value=1.2e+02 Score=25.21 Aligned_cols=56 Identities=9% Similarity=-0.023 Sum_probs=37.4
Q ss_pred CCHHHHHhhCC----CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEEEeeccCcccc
Q psy9443 6 LSWEEVKARAP----ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSGFTGK 64 (127)
Q Consensus 6 ~~~~~~~~~l~----~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v~~a~h~ 64 (127)
++.+.+++.+. .+....++.+---++.+|..+.++++.+.+++.|+ .|.|++|++.
T Consensus 221 md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~i---wlHVDaA~gg 280 (490)
T PLN02880 221 LAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGM---WFHVDAAYAG 280 (490)
T ss_pred CCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCC---EEEEehhhHH
Confidence 56666666663 12222233333345779999999999999999986 5778877553
No 74
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=29.78 E-value=94 Score=19.27 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=21.3
Q ss_pred EeeCCCc---eEEeCcHHHHHHHHHHHhhc
Q psy9443 23 CHNNVDS---VTISGPPAAIDKFVAELSAE 49 (127)
Q Consensus 23 ~~N~p~~---~vvsG~~~~i~~~~~~l~~~ 49 (127)
+.|.++. +++.|+.+.++++.+.|+..
T Consensus 36 V~N~~dg~V~i~~~G~~~~l~~f~~~l~~g 65 (91)
T PF00708_consen 36 VRNLPDGSVEIEAEGEEEQLEEFIKWLKKG 65 (91)
T ss_dssp EEE-TTSEEEEEEEEEHHHHHHHHHHHHHS
T ss_pred EEECCCCEEEEEEEeCHHHHHHHHHHHHhC
Confidence 4455555 67899999999999999985
No 75
>PRK14439 acylphosphatase; Provisional
Probab=29.75 E-value=1e+02 Score=22.03 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.5
Q ss_pred ceEEeCcHHHHHHHHHHHhhcC
Q psy9443 29 SVTISGPPAAIDKFVAELSAEG 50 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~~g 50 (127)
.+.+.|+.+.|+++.+.|++.|
T Consensus 116 EI~aQG~ee~Ie~Fi~~L~~~g 137 (163)
T PRK14439 116 EVVACGEEGQVEKLMQWLKSGG 137 (163)
T ss_pred EEEEEcCHHHHHHHHHHHhhCC
Confidence 4778999999999999999854
No 76
>COG4954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.70 E-value=80 Score=21.11 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=19.8
Q ss_pred eEEeCcHHHHHHHHHHHhhcCce
Q psy9443 30 VTISGPPAAIDKFVAELSAEGVF 52 (127)
Q Consensus 30 ~vvsG~~~~i~~~~~~l~~~g~~ 52 (127)
+|+||+.+.+.++..+.-++++.
T Consensus 59 ivls~dqetl~aihrraler~vt 81 (135)
T COG4954 59 IVLSGDQETLKAIHRRALERKVT 81 (135)
T ss_pred EEEeCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999887777653
No 77
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=29.60 E-value=1.2e+02 Score=22.00 Aligned_cols=73 Identities=11% Similarity=0.169 Sum_probs=41.6
Q ss_pred HHHHhhcCceEEEeeccCcccccccccc--------HHHHHh-hhhhccccccCccc--------ccCceeeeeeEECch
Q psy9443 43 VAELSAEGVFAKKVASSGFTGKLDWTGN--------WISYID-TMLQFSILGINTRE--------LYLPTRMQRVCIDPA 105 (127)
Q Consensus 43 ~~~l~~~g~~~~~L~v~~a~h~~~~~~~--------~~~~~d-~ll~~~v~~~~~~~--------~~~p~~i~~~~~~pv 105 (127)
.+.|+++|+++..++++..- +.|+.+ |..-+. .-....++||.... +-+|...+.--=.+-
T Consensus 20 ~~~L~~~Gikgvi~DlDNTL--v~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~~ 97 (175)
T COG2179 20 PDILKAHGIKGVILDLDNTL--VPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKPFGR 97 (175)
T ss_pred HHHHHHcCCcEEEEeccCce--ecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecccCccHH
Confidence 35678888888888888652 344432 222222 22455666664221 223333344444558
Q ss_pred hhHHHHhhhcCC
Q psy9443 106 KHKALVETLSGD 117 (127)
Q Consensus 106 ~~~~~v~~~~~~ 117 (127)
.|.+++++|.-.
T Consensus 98 ~fr~Al~~m~l~ 109 (175)
T COG2179 98 AFRRALKEMNLP 109 (175)
T ss_pred HHHHHHHHcCCC
Confidence 999999999633
No 78
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=28.94 E-value=51 Score=23.82 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=21.1
Q ss_pred CceEEeCcHHHHHHHHHHHhhcCceE
Q psy9443 28 DSVTISGPPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 28 ~~~vvsG~~~~i~~~~~~l~~~g~~~ 53 (127)
..+.++|+..-++.+.+.|++.|+..
T Consensus 202 ~~vyicGp~~m~~~~~~~l~~~G~~~ 227 (236)
T cd06210 202 PDIYLCGPPGMVDAAFAAAREAGVPD 227 (236)
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCCH
Confidence 45788999999999999998888743
No 79
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=28.83 E-value=69 Score=15.24 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=10.4
Q ss_pred CcHHHHHHHHHHHhh
Q psy9443 34 GPPAAIDKFVAELSA 48 (127)
Q Consensus 34 G~~~~i~~~~~~l~~ 48 (127)
|++++++.+.+.|++
T Consensus 13 gd~~ai~~L~~~L~d 27 (27)
T PF03130_consen 13 GDPRAIPALIEALED 27 (27)
T ss_dssp -SHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcC
Confidence 667888888877753
No 80
>PRK14440 acylphosphatase; Provisional
Probab=28.80 E-value=1.2e+02 Score=19.16 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=17.6
Q ss_pred ceEEeCcHHHHHHHHHHHhh
Q psy9443 29 SVTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~ 48 (127)
.+.+.|+.+.++++.+.|+.
T Consensus 44 ei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14440 44 EVVAEGYEEALSKLLERIKQ 63 (90)
T ss_pred EEEEEcCHHHHHHHHHHHhh
Confidence 36679999999999999984
No 81
>PRK14426 acylphosphatase; Provisional
Probab=28.76 E-value=70 Score=20.21 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=18.4
Q ss_pred ceEEeCcHHHHHHHHHHHhhc
Q psy9443 29 SVTISGPPAAIDKFVAELSAE 49 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~~ 49 (127)
.+.+.|+.+.|+++.+.|+..
T Consensus 45 ei~~~G~~~~i~~f~~~l~~g 65 (92)
T PRK14426 45 EVVACGEEEQVEKLMEWLKEG 65 (92)
T ss_pred EEEEEeCHHHHHHHHHHHhcC
Confidence 367899999999999999864
No 82
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=28.61 E-value=64 Score=23.06 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=24.1
Q ss_pred CCceEEeCcHHHHHHHHHHHhhcCceEEEe
Q psy9443 27 VDSVTISGPPAAIDKFVAELSAEGVFAKKV 56 (127)
Q Consensus 27 p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L 56 (127)
...+-++|+..-++.+.+.|++.|+....+
T Consensus 187 ~~~vyicGp~~m~~~~~~~L~~~Gv~~~~i 216 (222)
T cd06194 187 DDVVYLCGAPSMVNAVRRRAFLAGAPMKRI 216 (222)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCCHHHe
Confidence 456888999999999999999988754444
No 83
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=28.55 E-value=1.9e+02 Score=22.65 Aligned_cols=53 Identities=8% Similarity=-0.015 Sum_probs=35.9
Q ss_pred CHHHHHhhCCCCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEEEeeccCcccc
Q psy9443 7 SWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSGFTGK 64 (127)
Q Consensus 7 ~~~~~~~~l~~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v~~a~h~ 64 (127)
+.+++++.+.++..+..+++|++- .|+...++++.+.+++.|+.. -++.+++.
T Consensus 125 d~~~l~~~i~~~tklv~le~P~NP--~~~~~dl~~I~~la~~~g~~l---IvD~t~~~ 177 (366)
T PRK08247 125 SLKAIEQAITPNTKAIFIETPTNP--LMQETDIAAIAKIAKKHGLLL---IVDNTFYT 177 (366)
T ss_pred CHHHHHHhcccCceEEEEECCCCC--CCcHHHHHHHHHHHHHcCCEE---EEECCCcc
Confidence 567787777644445555566654 588999999999999988643 34545433
No 84
>PHA02754 hypothetical protein; Provisional
Probab=28.48 E-value=1.1e+02 Score=18.18 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhcCceEEEeeccCc
Q psy9443 36 PAAIDKFVAELSAEGVFAKKVASSGF 61 (127)
Q Consensus 36 ~~~i~~~~~~l~~~g~~~~~L~v~~a 61 (127)
.+++.++.+.|.++|+...++.+=+.
T Consensus 17 ke~MRelkD~LSe~GiYi~RIkai~~ 42 (67)
T PHA02754 17 KEAMRELKDILSEAGIYIDRIKAITT 42 (67)
T ss_pred HHHHHHHHHHHhhCceEEEEEEEEEe
Confidence 46888999999999997777665433
No 85
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=28.42 E-value=99 Score=22.76 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.6
Q ss_pred CCCceEEeCcHHHHHHHHHHHhhcCce
Q psy9443 26 NVDSVTISGPPAAIDKFVAELSAEGVF 52 (127)
Q Consensus 26 ~p~~~vvsG~~~~i~~~~~~l~~~g~~ 52 (127)
..+.+.++|+++-++++.+.|++.|++
T Consensus 180 ~~~~vyvCGp~~m~~~v~~~l~~~Gv~ 206 (250)
T PRK00054 180 EYDAIYSCGPEIMMKKVVEILKEKKVP 206 (250)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCc
Confidence 345789999999999999999999983
No 86
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=28.33 E-value=1.1e+02 Score=20.25 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=20.8
Q ss_pred eEEeCcHHHHHHHHHHHhhc---CceEEE
Q psy9443 30 VTISGPPAAIDKFVAELSAE---GVFAKK 55 (127)
Q Consensus 30 ~vvsG~~~~i~~~~~~l~~~---g~~~~~ 55 (127)
..|.|+.+.|+++.+++++. +|+++.
T Consensus 35 ~~i~Ge~e~V~~~i~~iR~ld~~~IF~Kd 63 (104)
T PF09875_consen 35 AMIEGEEEEVDKVIEEIRKLDPNHIFVKD 63 (104)
T ss_pred eEEECCHHHHHHHHHHHHhhCCCceEeec
Confidence 56799999999999999873 555554
No 87
>PRK05939 hypothetical protein; Provisional
Probab=28.00 E-value=1.9e+02 Score=23.21 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=33.5
Q ss_pred CHHHHHhhCCCCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceE
Q psy9443 7 SWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 7 ~~~~~~~~l~~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~ 53 (127)
+.+++++.+.++..+...++|++- .|....++++.+.+++.|+..
T Consensus 120 d~e~l~~~l~~~tklV~vesp~Np--tG~v~dl~~I~~la~~~gi~l 164 (397)
T PRK05939 120 DVQNVAAAIRPNTRMVFVETIANP--GTQVADLAGIGALCRERGLLY 164 (397)
T ss_pred CHHHHHHhCCCCCeEEEEECCCCC--CCCHHhHHHHHHHHHHcCCEE
Confidence 567788887655555556666654 677889999999999998743
No 88
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=27.95 E-value=75 Score=22.70 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.6
Q ss_pred CceEEeCcHHHHH-HHHHHHhhcCce
Q psy9443 28 DSVTISGPPAAID-KFVAELSAEGVF 52 (127)
Q Consensus 28 ~~~vvsG~~~~i~-~~~~~l~~~g~~ 52 (127)
..+.++|+..-++ ++.+.|++.|+.
T Consensus 202 ~~~~icGp~~~~~~~~~~~l~~~G~~ 227 (234)
T cd06183 202 TLVLVCGPPPMIEGAVKGLLKELGYK 227 (234)
T ss_pred eEEEEECCHHHHHHHHHHHHHHcCCC
Confidence 4588999999999 999999988874
No 89
>PF05137 PilN: Fimbrial assembly protein (PilN); InterPro: IPR007813 PilN is a plasmid-encoded, lipoprotein which locates to the outer membrane of bacteria and are part of a thin pilus required only for liquid mating [].
Probab=27.85 E-value=1.3e+02 Score=17.51 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=28.8
Q ss_pred HHHHhhCCCCeEEEEeeC-CCceEEeCcH---HHHHHHHHHHhhcCc
Q psy9443 9 EEVKARAPADIVAACHNN-VDSVTISGPP---AAIDKFVAELSAEGV 51 (127)
Q Consensus 9 ~~~~~~l~~~v~iA~~N~-p~~~vvsG~~---~~i~~~~~~l~~~g~ 51 (127)
+++...+++++++-.++- .+++.|+|.. +++.++...|++.+.
T Consensus 4 ~~L~~~~P~~v~l~~l~~~~~~l~i~G~a~~~~~v~~f~~~L~~~~~ 50 (78)
T PF05137_consen 4 DELARALPEGVWLTSLSINGNTLSISGYADSYQSVAAFLRNLEQSPF 50 (78)
T ss_pred HHHHhhCCCCEEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHhhCCC
Confidence 456666666676665553 3357777766 788888888887654
No 90
>PLN02651 cysteine desulfurase
Probab=27.70 E-value=1.4e+02 Score=23.12 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=32.8
Q ss_pred CCHHHHHhhCCCCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCce
Q psy9443 6 LSWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVF 52 (127)
Q Consensus 6 ~~~~~~~~~l~~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~ 52 (127)
.+.+++++.+.++..+.++..++.. +|....++++.+.+++.|+.
T Consensus 126 ~d~~~l~~~i~~~t~lv~v~~~~n~--tG~~~~l~~I~~~~~~~g~~ 170 (364)
T PLN02651 126 VDLDELAAAIRPDTALVSVMAVNNE--IGVIQPVEEIGELCREKKVL 170 (364)
T ss_pred CCHHHHHHhcCCCcEEEEEECCCCC--ceecccHHHHHHHHHHcCCE
Confidence 4677888888755555555555542 68888899999999998863
No 91
>COG0774 LpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]
Probab=27.59 E-value=1.5e+02 Score=23.24 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=44.8
Q ss_pred CceEEeCc----HHHHHHHHHHHhhcCceEEEeeccCccccccccccHHHHHhhhhhcccccc
Q psy9443 28 DSVTISGP----PAAIDKFVAELSAEGVFAKKVASSGFTGKLDWTGNWISYIDTMLQFSILGI 86 (127)
Q Consensus 28 ~~~vvsG~----~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~~~~~~~~~~d~ll~~~v~~~ 86 (127)
.+++++.+ ...|+.+.+.|...||.--.+.++++- -+-|++...||+..+.+..+..+
T Consensus 62 l~T~L~~~~~~~I~TVEHLmaAl~~lgIDN~~Iev~g~E-iPImDGSa~~Fv~li~~aGi~~q 123 (300)
T COG0774 62 LSTTLGNDHGVRISTVEHLMAALAGLGIDNLIIEVDGPE-IPIMDGSAAPFVELIDEAGIKEQ 123 (300)
T ss_pred eeeeecCCCCcEEeeHHHHHHHHHhCCCccEEEEecCCc-CcccCCchHHHHHHHHHhCchhh
Confidence 44666666 457999999999999988889999886 57788888888887766655444
No 92
>PRK14451 acylphosphatase; Provisional
Probab=27.57 E-value=77 Score=19.95 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.5
Q ss_pred ceEEeCcHHHHHHHHHHHhh
Q psy9443 29 SVTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~ 48 (127)
.+.+.|+.+.|+++.+.|+.
T Consensus 44 ei~~qG~~~~i~~f~~~l~~ 63 (89)
T PRK14451 44 EVFACGKEDKLEEFYTWLQK 63 (89)
T ss_pred EEEEEECHHHHHHHHHHHhh
Confidence 36778999999999999984
No 93
>PRK13186 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed
Probab=27.42 E-value=1.4e+02 Score=23.41 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=46.9
Q ss_pred eCCCceEEe---CcHHHHHHHHHHHhhcCceEEEeeccCccccccccccHHHHHhhhhhcccccc
Q psy9443 25 NNVDSVTIS---GPPAAIDKFVAELSAEGVFAKKVASSGFTGKLDWTGNWISYIDTMLQFSILGI 86 (127)
Q Consensus 25 N~p~~~vvs---G~~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~~~~~~~~~~d~ll~~~v~~~ 86 (127)
+++..++|. .....++.+.+.|...||.--.+.++++ .-+-+++...+|++.+.+..+..+
T Consensus 59 ~t~~~T~l~~~~~~V~TVEHllAAL~glgIDN~~Ievdg~-EvPIlDGSA~~fv~~i~~aGi~~q 122 (295)
T PRK13186 59 DTRLCTTLGNGGVRVSTVEHLMAALAGLGIDNALIEVDGP-EVPIMDGSAAPFVFLIQSAGIVEQ 122 (295)
T ss_pred cCcceeEEecCCeEEEeHHHHHHHHHhCCCceEEEEeCCC-CCCCccCCHHHHHHHHHHCCCeec
Confidence 455566665 2355789999999999998888888876 468888889999998877766544
No 94
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=26.94 E-value=96 Score=20.60 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhcCceEEEeeccCcc
Q psy9443 36 PAAIDKFVAELSAEGVFAKKVASSGFT 62 (127)
Q Consensus 36 ~~~i~~~~~~l~~~g~~~~~L~v~~a~ 62 (127)
.++-..+.++|.+.|+++.+|...+.|
T Consensus 10 d~Da~~l~~~L~~~g~~~TkLsstGGF 36 (109)
T PF06153_consen 10 DEDADDLSDALNENGFRVTKLSSTGGF 36 (109)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEEEETT
T ss_pred HhhHHHHHHHHHHCCceEEEEecccce
Confidence 356688999999999999999987764
No 95
>PRK14443 acylphosphatase; Provisional
Probab=26.83 E-value=1.1e+02 Score=19.51 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=18.9
Q ss_pred CceEEeCcHHHHHHHHHHHhhc
Q psy9443 28 DSVTISGPPAAIDKFVAELSAE 49 (127)
Q Consensus 28 ~~~vvsG~~~~i~~~~~~l~~~ 49 (127)
=.+.+.|+.+.|+++.+.|+..
T Consensus 44 Vei~~qG~~~~l~~f~~~l~~g 65 (93)
T PRK14443 44 VEIHAIAEEENLNKFIDAIKKG 65 (93)
T ss_pred EEEEEECCHHHHHHHHHHHhcC
Confidence 3477899999999999999874
No 96
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=26.81 E-value=75 Score=23.33 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=20.6
Q ss_pred eCcHHHHHHHHHHHhhcCceEEE
Q psy9443 33 SGPPAAIDKFVAELSAEGVFAKK 55 (127)
Q Consensus 33 sG~~~~i~~~~~~l~~~g~~~~~ 55 (127)
-|+.+++++|++++.++|++...
T Consensus 48 ~Gt~~d~~~Lv~~~h~~gi~Vil 70 (316)
T PF00128_consen 48 FGTMEDFKELVDAAHKRGIKVIL 70 (316)
T ss_dssp TBHHHHHHHHHHHHHHTTCEEEE
T ss_pred cchhhhhhhhhhccccccceEEE
Confidence 48999999999999999998763
No 97
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=26.58 E-value=97 Score=21.80 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.1
Q ss_pred CCceEEeCcHHHHHHHHHHHhhcCce
Q psy9443 27 VDSVTISGPPAAIDKFVAELSAEGVF 52 (127)
Q Consensus 27 p~~~vvsG~~~~i~~~~~~l~~~g~~ 52 (127)
...+.++|+..-++.+.+.|.+.|+.
T Consensus 191 ~~~~yvCGp~~m~~~~~~~L~~~gv~ 216 (223)
T cd00322 191 GALVYICGPPAMAKAVREALVSLGVP 216 (223)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCC
Confidence 45688999999999999999988863
No 98
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=26.52 E-value=1.8e+02 Score=23.86 Aligned_cols=49 Identities=8% Similarity=0.015 Sum_probs=35.8
Q ss_pred CCHHHHHhhCC----CCeEEEEeeCCCceE--EeCcHHHHHHHHHHHhhcCceEE
Q psy9443 6 LSWEEVKARAP----ADIVAACHNNVDSVT--ISGPPAAIDKFVAELSAEGVFAK 54 (127)
Q Consensus 6 ~~~~~~~~~l~----~~v~iA~~N~p~~~v--vsG~~~~i~~~~~~l~~~g~~~~ 54 (127)
++.+++++.+. ++..+-..|+|++.+ -.-+.+.++++.+.+++.|+...
T Consensus 161 id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li 215 (460)
T PRK13238 161 FDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVV 215 (460)
T ss_pred cCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 67888888875 246677777777544 12268889999999999887543
No 99
>PRK14442 acylphosphatase; Provisional
Probab=26.44 E-value=89 Score=19.71 Aligned_cols=19 Identities=16% Similarity=0.087 Sum_probs=17.1
Q ss_pred eEEeCcHHHHHHHHHHHhh
Q psy9443 30 VTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 30 ~vvsG~~~~i~~~~~~l~~ 48 (127)
+++.|+.+.++.+.+.|++
T Consensus 46 i~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14442 46 VVWEGEEDRAKALERWLGR 64 (91)
T ss_pred EEEEcCHHHHHHHHHHHhh
Confidence 6678999999999999984
No 100
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=26.40 E-value=57 Score=23.78 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=23.8
Q ss_pred CCceEEeCcHHHHHHHHHHHhhcCceEEEe
Q psy9443 27 VDSVTISGPPAAIDKFVAELSAEGVFAKKV 56 (127)
Q Consensus 27 p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L 56 (127)
...+.++|+..-++++.+.|++.|+....+
T Consensus 209 ~~~v~icGp~~m~~~v~~~l~~~G~~~~~i 238 (247)
T cd06184 209 DADFYLCGPVPFMQAVREGLKALGVPAERI 238 (247)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCHHHe
Confidence 356888999999999999999988754333
No 101
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=26.35 E-value=88 Score=22.44 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=20.8
Q ss_pred CCceE--EeCcHHHHHHHHHHHhhcCc
Q psy9443 27 VDSVT--ISGPPAAIDKFVAELSAEGV 51 (127)
Q Consensus 27 p~~~v--vsG~~~~i~~~~~~l~~~g~ 51 (127)
+.+++ ++|+++-++++.+.|+.-|+
T Consensus 117 ~~~~~ie~tG~~~ki~a~~~~l~~~gi 143 (174)
T CHL00100 117 EESLILEVTGDPGKIVAIEQLLEKFGI 143 (174)
T ss_pred CCEEEEEEcCCHHHHHHHHHHhhhcCC
Confidence 45544 49999999999999999887
No 102
>PRK14427 acylphosphatase; Provisional
Probab=26.35 E-value=1.2e+02 Score=19.17 Aligned_cols=26 Identities=19% Similarity=0.343 Sum_probs=20.5
Q ss_pred eeCCCc---eEEeCcHHHHHHHHHHHhhc
Q psy9443 24 HNNVDS---VTISGPPAAIDKFVAELSAE 49 (127)
Q Consensus 24 ~N~p~~---~vvsG~~~~i~~~~~~l~~~ 49 (127)
-|.+.- +.+.|+.++|+++.+.|+..
T Consensus 39 ~N~~dGsVei~~qG~~~~i~~f~~~l~~~ 67 (94)
T PRK14427 39 RNLDDGSVALVAEGTGEQVEKLLDWLNSD 67 (94)
T ss_pred EECCCCeEEEEEEECHHHHHHHHHHHhhC
Confidence 355543 56799999999999999864
No 103
>PRK14423 acylphosphatase; Provisional
Probab=26.30 E-value=1.7e+02 Score=18.36 Aligned_cols=20 Identities=20% Similarity=0.357 Sum_probs=17.7
Q ss_pred ceEEeCcHHHHHHHHHHHhh
Q psy9443 29 SVTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~ 48 (127)
.+.+.|+.+.++++.+.|+.
T Consensus 46 ei~~~G~~~~i~~f~~~l~~ 65 (92)
T PRK14423 46 EAVFEGPRDAVEAMVEWCHE 65 (92)
T ss_pred EEEEEECHHHHHHHHHHHHh
Confidence 46789999999999999984
No 104
>COG4816 EutL Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=26.27 E-value=1.6e+02 Score=21.59 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=27.0
Q ss_pred CCeEEEEeeCCCc------eEEeCcHHHHHHHHHHHhh
Q psy9443 17 ADIVAACHNNVDS------VTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 17 ~~v~iA~~N~p~~------~vvsG~~~~i~~~~~~l~~ 48 (127)
.+|.+..|.+|-+ ..|+|+..+.+..++..+.
T Consensus 169 AdV~lvay~~PpseTnfs~~~ltGsq~AcksAc~afk~ 206 (219)
T COG4816 169 ADVQLVAYSSPPSETNFSIAFLTGSQQACKSACEAFKD 206 (219)
T ss_pred cceeEEEecCCCCCCeeeeEEEeCcHHHHHHHHHHHHH
Confidence 5899999999977 6789999988888777665
No 105
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=26.04 E-value=1.5e+02 Score=22.29 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=29.0
Q ss_pred CCHHHHHhhCCC-------CeEEEEeeCCCceEEeC--cHHHHHHHHHHHhhcCce
Q psy9443 6 LSWEEVKARAPA-------DIVAACHNNVDSVTISG--PPAAIDKFVAELSAEGVF 52 (127)
Q Consensus 6 ~~~~~~~~~l~~-------~v~iA~~N~p~~~vvsG--~~~~i~~~~~~l~~~g~~ 52 (127)
++.+++++.+.. +..+...++|+.. +| +.+.++++.+.+++.|+.
T Consensus 108 ~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~--g~~~~~~~l~~i~~~~~~~~~~ 161 (338)
T cd06502 108 LTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG--GTVYPLDELKAISALAKENGLP 161 (338)
T ss_pred CCHHHHHHHhhccCCCcCCcceEEEEEeecCC--ccccCHHHHHHHHHHHHHcCCe
Confidence 567778777642 3334444445542 22 788999999999887753
No 106
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=25.86 E-value=72 Score=26.44 Aligned_cols=29 Identities=17% Similarity=0.060 Sum_probs=24.3
Q ss_pred EeeCCCceEEeCcHHHHHHHHHHHhhcCce
Q psy9443 23 CHNNVDSVTISGPPAAIDKFVAELSAEGVF 52 (127)
Q Consensus 23 ~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~ 52 (127)
+-++| .+.++|++++.+.+...|+.-+.+
T Consensus 134 A~~G~-~lm~GG~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 134 ARYGP-SLMPGGNKEAYDHVKDILEKCSAK 162 (470)
T ss_pred HhcCC-EEEEeCCHHHHHHHHHHHHHHhhh
Confidence 34677 799999999999999999987655
No 107
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=25.84 E-value=3e+02 Score=21.25 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=33.1
Q ss_pred CCHHHHHhhCCCCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceE
Q psy9443 6 LSWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 6 ~~~~~~~~~l~~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~ 53 (127)
.+.+++++.+.++..+.+...++. .+|....++++.+.+++.|+..
T Consensus 124 ~~~~~l~~~i~~~~~lv~i~~~~n--~tG~~~~~~~I~~l~~~~g~~v 169 (379)
T TIGR03402 124 LDLEELRAAITDDTALVSVMWANN--ETGTIFPIEEIGEIAKERGALF 169 (379)
T ss_pred CCHHHHHHhcCCCcEEEEEEcccC--CeeecccHHHHHHHHHHcCCEE
Confidence 567888888865555555555544 3788888899999999988644
No 108
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=25.74 E-value=2.5e+02 Score=20.41 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=29.7
Q ss_pred CHHHHHhhCC-CCeEEEEeeCCCc---------eEEeCcH----HHHHHHHHHHhhcCceEEEee
Q psy9443 7 SWEEVKARAP-ADIVAACHNNVDS---------VTISGPP----AAIDKFVAELSAEGVFAKKVA 57 (127)
Q Consensus 7 ~~~~~~~~l~-~~v~iA~~N~p~~---------~vvsG~~----~~i~~~~~~l~~~g~~~~~L~ 57 (127)
..+++++++. .++.+++++.|.. .+..++. +.+++..+.++..|.....+.
T Consensus 40 ~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~ 104 (254)
T TIGR03234 40 DAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYARALGCPQVNCL 104 (254)
T ss_pred CHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHHhCCCEEEEC
Confidence 4566777775 5788888876532 1222322 344555666667777655443
No 109
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.54 E-value=85 Score=19.67 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=16.9
Q ss_pred eCcHHHHHHHHHHHhhcCceE
Q psy9443 33 SGPPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 33 sG~~~~i~~~~~~l~~~g~~~ 53 (127)
..+.++++++.++|++.|+..
T Consensus 72 v~~~~~v~~~~~~l~~~g~~~ 92 (125)
T cd07255 72 LPSRADLAAALRRLIELGIPL 92 (125)
T ss_pred CCCHHHHHHHHHHHHHcCCce
Confidence 346688999999999999854
No 110
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=25.42 E-value=1.1e+02 Score=19.31 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=16.3
Q ss_pred CcHHHHHHHHHHHhhcCceEEE
Q psy9443 34 GPPAAIDKFVAELSAEGVFAKK 55 (127)
Q Consensus 34 G~~~~i~~~~~~l~~~g~~~~~ 55 (127)
.+.++++++.++|++.|+....
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~ 91 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVER 91 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEE
Confidence 4456788888888888876554
No 111
>PRK09082 methionine aminotransferase; Validated
Probab=25.36 E-value=2.6e+02 Score=21.79 Aligned_cols=46 Identities=13% Similarity=0.261 Sum_probs=29.7
Q ss_pred CCHHHHHhhCCCCeEEEEeeCCCceEEeC---cHHHHHHHHHHHhhcCceE
Q psy9443 6 LSWEEVKARAPADIVAACHNNVDSVTISG---PPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 6 ~~~~~~~~~l~~~v~iA~~N~p~~~vvsG---~~~~i~~~~~~l~~~g~~~ 53 (127)
++.+++++.+..+..+...++|+. -+| +.+.++++.+.+++.|+..
T Consensus 151 ~d~~~l~~~~~~~~~~v~l~~p~N--PtG~~~~~~~~~~i~~~a~~~~i~l 199 (386)
T PRK09082 151 VDWQRFAAAISPRTRLIILNTPHN--PSGTVWSAADMRALWQLIAGTDIYV 199 (386)
T ss_pred CCHHHHHHhcCccceEEEEeCCCC--CCCcCCCHHHHHHHHHHHHHCCEEE
Confidence 456777777754444444544543 244 4689999999999888643
No 112
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=25.20 E-value=1.1e+02 Score=17.93 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=20.0
Q ss_pred eCcHHHHHHHHHHHhhcCceEEEe
Q psy9443 33 SGPPAAIDKFVAELSAEGVFAKKV 56 (127)
Q Consensus 33 sG~~~~i~~~~~~l~~~g~~~~~L 56 (127)
+|..+.+..+.+.++++|++..-+
T Consensus 57 sg~t~~~~~~~~~a~~~g~~ii~i 80 (87)
T cd04795 57 SGRTEELLAALEIAKELGIPVIAI 80 (87)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEE
Confidence 687888999999999999876554
No 113
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=25.18 E-value=1.4e+02 Score=19.28 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=18.9
Q ss_pred eEEeCcHHHHHHHHHHHhhcCceEE
Q psy9443 30 VTISGPPAAIDKFVAELSAEGVFAK 54 (127)
Q Consensus 30 ~vvsG~~~~i~~~~~~l~~~g~~~~ 54 (127)
+.++-+.++++++.++|++.|+...
T Consensus 70 iaf~v~~~~ld~~~~~l~~~gv~~~ 94 (131)
T cd08364 70 IAFKISDSDVDEYTERIKALGVEMK 94 (131)
T ss_pred EEEEcCHHHHHHHHHHHHHCCCEEe
Confidence 4455555789999999999998543
No 114
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=25.13 E-value=1.3e+02 Score=24.89 Aligned_cols=48 Identities=8% Similarity=0.091 Sum_probs=35.0
Q ss_pred cCCHHHHHhhCCC---CeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceE
Q psy9443 5 GLSWEEVKARAPA---DIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 5 ~~~~~~~~~~l~~---~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~ 53 (127)
.++.+++++.+.+ +..+..+++|+ +.-.|..+.++++.+.+++.|+..
T Consensus 188 ~iD~e~Le~aIt~~~~kai~~Vv~Tp~-t~~~g~~ddL~eIa~la~k~gI~l 238 (444)
T TIGR03531 188 TTDVEDIERAIEEIGPDNILCVLSTTS-CFAPRSPDDIEEIAKICANYDIPH 238 (444)
T ss_pred CcCHHHHHHHHHhccCCCEEEEEEcCC-cCCCcchhCHHHHHHHHHHcCCEE
Confidence 4577888887752 44566667777 334468999999999999998754
No 115
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=25.03 E-value=1e+02 Score=22.35 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=22.6
Q ss_pred CCCceEEeCcHHHHHHHHHHHhhcCce
Q psy9443 26 NVDSVTISGPPAAIDKFVAELSAEGVF 52 (127)
Q Consensus 26 ~p~~~vvsG~~~~i~~~~~~l~~~g~~ 52 (127)
....+-++|+..-++.+.+.|++.|+.
T Consensus 200 ~~~~vyiCGp~~m~~~~~~~l~~~G~~ 226 (241)
T cd06195 200 ETSHVMLCGNPQMIDDTQELLKEKGFS 226 (241)
T ss_pred ccCEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 345678899999999999999998874
No 116
>PRK14432 acylphosphatase; Provisional
Probab=24.81 E-value=1e+02 Score=19.56 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=19.5
Q ss_pred eeCCCc---eEEe-CcHHHHHHHHHHHhhc
Q psy9443 24 HNNVDS---VTIS-GPPAAIDKFVAELSAE 49 (127)
Q Consensus 24 ~N~p~~---~vvs-G~~~~i~~~~~~l~~~ 49 (127)
-|-++- +++. |+.++++++.+.|+..
T Consensus 35 ~N~~dG~Vei~~~~G~~~~v~~f~~~l~~g 64 (93)
T PRK14432 35 KNLNDGRVEIVAFFNTKEQMKKFEKLLKNG 64 (93)
T ss_pred EECCCCCEEEEEEECCHHHHHHHHHHHHhC
Confidence 354443 4555 9999999999999864
No 117
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=24.78 E-value=3.2e+02 Score=21.29 Aligned_cols=46 Identities=4% Similarity=0.056 Sum_probs=31.0
Q ss_pred CCHHHHHhhCCCCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceE
Q psy9443 6 LSWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 6 ~~~~~~~~~l~~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~ 53 (127)
.+.+++++.+.++..+.+++.|+. .+|....++++.+.+++.|+..
T Consensus 145 ~~~~~l~~~i~~~t~lv~i~~~~n--~tG~~~~~~~i~~~~~~~~~~~ 190 (398)
T TIGR03392 145 PDIRQLPELLTPRTRILALGQMSN--VTGGCPDLARAITLAHQYGAVV 190 (398)
T ss_pred cCHHHHHHHhccCceEEEEECccc--cccccCCHHHHHHHHHHcCCEE
Confidence 456778777764444445555544 3677778888999898888643
No 118
>PRK14424 acylphosphatase; Provisional
Probab=24.55 E-value=2e+02 Score=18.35 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=18.1
Q ss_pred ceEEeCcHHHHHHHHHHHhh
Q psy9443 29 SVTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~ 48 (127)
.+++.|+.++|+.+.+.|+.
T Consensus 48 ei~~qG~~~~v~~f~~~l~~ 67 (94)
T PRK14424 48 EAMIQGPAAQIDRMLAWLRH 67 (94)
T ss_pred EEEEEECHHHHHHHHHHHHh
Confidence 57889999999999999984
No 119
>PF05798 Phage_FRD3: Bacteriophage FRD3 protein; InterPro: IPR008765 This is a group of proteins of unknown function from bacteriophage T2 and related phage.
Probab=24.55 E-value=83 Score=19.16 Aligned_cols=38 Identities=16% Similarity=0.340 Sum_probs=24.2
Q ss_pred HHHHHhhCC---CCeEEEEe-eCC---CceEEeCcHHHHHHHHHH
Q psy9443 8 WEEVKARAP---ADIVAACH-NNV---DSVTISGPPAAIDKFVAE 45 (127)
Q Consensus 8 ~~~~~~~l~---~~v~iA~~-N~p---~~~vvsG~~~~i~~~~~~ 45 (127)
.+-+++++. +.+.+.-+ ++| -|+++.|+.+++.++...
T Consensus 11 fEY~eEvIRNRyPelsi~si~d~~f~~~~i~i~GPle~l~~FM~n 55 (75)
T PF05798_consen 11 FEYTEEVIRNRYPELSITSIQDSKFCSIQIVIEGPLEDLTRFMAN 55 (75)
T ss_pred hHhHHHHHHccCCceEEEEeecCCcceEEEEEeccHHHHHHHHHH
Confidence 455555554 34555433 333 468999999999987653
No 120
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=24.46 E-value=1.5e+02 Score=18.42 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=30.0
Q ss_pred CCHHHHHhhCCCCeEEEEeeCCCceEEeC--cHHHHHHHHHHHhhcCceEEEeecc
Q psy9443 6 LSWEEVKARAPADIVAACHNNVDSVTISG--PPAAIDKFVAELSAEGVFAKKVASS 59 (127)
Q Consensus 6 ~~~~~~~~~l~~~v~iA~~N~p~~~vvsG--~~~~i~~~~~~l~~~g~~~~~L~v~ 59 (127)
++.+...+.....--+.--+.--.+.++| +...|.+...+|..+||+...|.-+
T Consensus 5 LS~~~A~a~WG~~AllSf~~~ga~IHl~~~~~l~~IQrAaRkLd~qGI~~V~L~G~ 60 (77)
T PF12404_consen 5 LSQQPAAAHWGEKALLSFNEQGATIHLSEGDDLRAIQRAARKLDGQGIKNVALAGE 60 (77)
T ss_pred eeCCCChhHhCcCcEEEEcCCCEEEEECCCcchHHHHHHHHHHhhCCCceEEEecC
Confidence 33333333333333333333333344544 3447788888899999988887543
No 121
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=24.37 E-value=1.6e+02 Score=22.86 Aligned_cols=44 Identities=7% Similarity=0.083 Sum_probs=30.7
Q ss_pred CHHHHHhhCCCCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCce
Q psy9443 7 SWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVF 52 (127)
Q Consensus 7 ~~~~~~~~l~~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~ 52 (127)
+.+++++.+.++..+..+++|++ .+|....++++.+.+++.|+.
T Consensus 145 ~~~~l~~~i~~~~~lv~i~~~~n--~tG~~~~~~~i~~~~~~~~~~ 188 (397)
T TIGR01976 145 HPDDLASLLSPRTRLVAVTAASN--TLGSIVDLAAITELVHAAGAL 188 (397)
T ss_pred CHHHHHHhcCCCceEEEEeCCCC--CCCccCCHHHHHHHHHHcCCE
Confidence 46777777765555556666654 367777889999988888763
No 122
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=24.11 E-value=1.2e+02 Score=21.02 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=27.9
Q ss_pred CCCceEEeCcHH----HHHHHHHHHhhcCceEEEeeccCcccc
Q psy9443 26 NVDSVTISGPPA----AIDKFVAELSAEGVFAKKVASSGFTGK 64 (127)
Q Consensus 26 ~p~~~vvsG~~~----~i~~~~~~l~~~g~~~~~L~v~~a~h~ 64 (127)
-|.-.++.|+.+ .-..+.++|++.|+.++..-.++..|.
T Consensus 166 ~Pp~~i~~g~~D~l~~~~~~~~~~L~~~gv~v~~~~~~g~~H~ 208 (211)
T PF07859_consen 166 LPPTLIIHGEDDVLVDDSLRFAEKLKKAGVDVELHVYPGMPHG 208 (211)
T ss_dssp CHEEEEEEETTSTTHHHHHHHHHHHHHTT-EEEEEEETTEETT
T ss_pred CCCeeeeccccccchHHHHHHHHHHHHCCCCEEEEEECCCeEE
Confidence 444555566554 456799999999999888888887774
No 123
>PRK13187 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed
Probab=23.77 E-value=2.1e+02 Score=22.53 Aligned_cols=61 Identities=10% Similarity=0.066 Sum_probs=47.6
Q ss_pred eCCCceEEeC-c---HHHHHHHHHHHhhcCceEEEeeccCccccccccccHHHHHhhhhhcccccc
Q psy9443 25 NNVDSVTISG-P---PAAIDKFVAELSAEGVFAKKVASSGFTGKLDWTGNWISYIDTMLQFSILGI 86 (127)
Q Consensus 25 N~p~~~vvsG-~---~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~~~~~~~~~~d~ll~~~v~~~ 86 (127)
+...+++|+- . ...++.+.+.|...||.-..+.++++- -+-+++...+|++.+.+..+..+
T Consensus 70 ~t~l~T~L~~~~~~~V~TVEHLlAAL~glgIDN~~Ievdg~E-vPIlDGSA~~fv~~i~~aGi~~q 134 (304)
T PRK13187 70 AQPLCTMLRNADGVGVRTVEHLLASLLACEIDHAIVELDAEE-VPILDGSATPWVDAIRACGRVAL 134 (304)
T ss_pred CCcceeEEecCCCcEEeeHHHHHHHHHhCCCceEEEEeCCCC-CCcccCCHHHHHHHHHhcCCeec
Confidence 4456677763 1 457899999999999988888888774 67888889999998877766544
No 124
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.65 E-value=1.7e+02 Score=23.33 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=17.2
Q ss_pred CeEEEEee-CCCceEEeCcHHHHHHHHHHHhhcCc
Q psy9443 18 DIVAACHN-NVDSVTISGPPAAIDKFVAELSAEGV 51 (127)
Q Consensus 18 ~v~iA~~N-~p~~~vvsG~~~~i~~~~~~l~~~g~ 51 (127)
.|.+--|| .|..-.-.=+.+.++++.+.|++.|+
T Consensus 281 ~VNLIp~Np~~~~~~~~~s~~~~~~F~~~L~~~gi 315 (345)
T PRK14466 281 RVNLIRFHAIPGVDLEGSDMARMEAFRDYLTSHGV 315 (345)
T ss_pred eEEEEecCCCCCCCCcCCCHHHHHHHHHHHHHCCC
Confidence 35555555 23332333344556666666666665
No 125
>PRK08051 fre FMN reductase; Validated
Probab=23.55 E-value=1.1e+02 Score=22.13 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=24.0
Q ss_pred CceEEeCcHHHHHHHHHHH-hhcCceEEEe
Q psy9443 28 DSVTISGPPAAIDKFVAEL-SAEGVFAKKV 56 (127)
Q Consensus 28 ~~~vvsG~~~~i~~~~~~l-~~~g~~~~~L 56 (127)
..+.++|+..-++.+.+.| ++.|+...++
T Consensus 195 ~~vyicGp~~m~~~v~~~l~~~~G~~~~~i 224 (232)
T PRK08051 195 YDIYIAGRFEMAKIARELFCRERGAREEHL 224 (232)
T ss_pred CEEEEECCHHHHHHHHHHHHHHcCCCHHHe
Confidence 4688999999999999999 8988854444
No 126
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=23.53 E-value=63 Score=23.29 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=21.7
Q ss_pred CceEEeCcHHHHHHHHHHHhhcCceEE
Q psy9443 28 DSVTISGPPAAIDKFVAELSAEGVFAK 54 (127)
Q Consensus 28 ~~~vvsG~~~~i~~~~~~l~~~g~~~~ 54 (127)
..+.++|+..-++.+.+.|++.|+...
T Consensus 198 ~~vyicGp~~mv~~~~~~l~~~G~~~~ 224 (231)
T cd06191 198 REAFICGPAGMMDAVETALKELGMPPE 224 (231)
T ss_pred CeEEEECCHHHHHHHHHHHHHcCCCHH
Confidence 467889999999999999988887433
No 127
>PRK07050 cystathionine beta-lyase; Provisional
Probab=23.45 E-value=2.4e+02 Score=22.50 Aligned_cols=44 Identities=14% Similarity=0.056 Sum_probs=32.4
Q ss_pred HHHHHhhCCCCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceE
Q psy9443 8 WEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 8 ~~~~~~~l~~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~ 53 (127)
.+++++.+.++..+...++|++. .|+...++++.+.+++.|+..
T Consensus 140 ~~~l~~~i~~~tklV~le~p~Np--~~~~~di~~I~~ia~~~gi~l 183 (394)
T PRK07050 140 GAGIADLIQPNTRLIWLEAPGSV--TMEVPDVPAITAAARARGVVT 183 (394)
T ss_pred HHHHHHhcCCCCeEEEEECCCCC--CccHhhHHHHHHHHHHcCCEE
Confidence 46677777654455566777764 489999999999999988643
No 128
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=23.24 E-value=2.7e+02 Score=19.43 Aligned_cols=53 Identities=13% Similarity=0.005 Sum_probs=28.9
Q ss_pred ecCCHHHHHhhCC------CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEEEeeccCc
Q psy9443 4 VGLSWEEVKARAP------ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSGF 61 (127)
Q Consensus 4 v~~~~~~~~~~l~------~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v~~a 61 (127)
+|.+++.++++.. +++.|+.+..|-- +.++.+++.+.+.+.+.....+-.+.+
T Consensus 54 lG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f-----~~~~~~~i~~~I~~~~pdiv~vglG~P 112 (172)
T PF03808_consen 54 LGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF-----DEEEEEAIINRINASGPDIVFVGLGAP 112 (172)
T ss_pred EeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-----ChhhHHHHHHHHHHcCCCEEEEECCCC
Confidence 3455554443332 4566665444332 556666677777666665555555544
No 129
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=22.95 E-value=1.5e+02 Score=18.93 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=29.0
Q ss_pred ceEEeCcHHHHHHHHHHHhhcCceEEEeeccCccccccccccHHHH
Q psy9443 29 SVTISGPPAAIDKFVAELSAEGVFAKKVASSGFTGKLDWTGNWISY 74 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~~~~~~~~~ 74 (127)
.+.-+|..+-.++|.++++++|+..+...++. +..-|.+|.+.+
T Consensus 10 ~ciAaGA~~V~~al~~ei~~~gl~v~v~~tGC--~G~C~~ePlV~V 53 (92)
T cd03063 10 AALALGADEVAEAIEAEAAARGLAATIVRNGS--RGMYWLEPLVEV 53 (92)
T ss_pred hhhhhCHHHHHHHHHHHHHHcCCeEEEEEecC--ceecCCCCEEEE
Confidence 45568999999999999999998433343432 234455544443
No 130
>PHA00019 IV phage assembly protein
Probab=22.78 E-value=2.3e+02 Score=23.02 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=34.8
Q ss_pred CCHHHHHhhCC--------CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCc
Q psy9443 6 LSWEEVKARAP--------ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGV 51 (127)
Q Consensus 6 ~~~~~~~~~l~--------~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~ 51 (127)
.+.+++.+.+. ++..+.....-+++++.|+++.++.+.+.++....
T Consensus 141 ~~a~~l~~~L~~~~~~~~~~~~~v~~d~~tN~Liv~~t~~~~~~i~~lI~~lD~ 194 (428)
T PHA00019 141 VRASDLLPLVKIFVKSNGAPGGSVTDLPGTNSLVVSGSASQLPALADFISAIDV 194 (428)
T ss_pred CCHHHHHHHHHHhhcccCCCCeEEEEeCCCCEEEEEeCHHHHHHHHHHHHhhCC
Confidence 34555555553 13567788888999999999999999999887654
No 131
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=22.77 E-value=80 Score=24.88 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=33.5
Q ss_pred CCHHHHHhhCCCCeEEEEeeCCCceEEeC------cHHHHHHHHHHHhhcCceEEEeeccCc
Q psy9443 6 LSWEEVKARAPADIVAACHNNVDSVTISG------PPAAIDKFVAELSAEGVFAKKVASSGF 61 (127)
Q Consensus 6 ~~~~~~~~~l~~~v~iA~~N~p~~~vvsG------~~~~i~~~~~~l~~~g~~~~~L~v~~a 61 (127)
++++++++++.. .......-.-+|+|| +.+...++.+.++.+|++.. |+.+++
T Consensus 111 is~~~~~~~l~~--~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vi-lD~Sg~ 169 (310)
T COG1105 111 ISEAELEQFLEQ--LKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVI-LDTSGE 169 (310)
T ss_pred CCHHHHHHHHHH--HHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEE-EECChH
Confidence 566777776641 011111223366777 67788999999999988764 777665
No 132
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=22.70 E-value=2e+02 Score=22.01 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=30.5
Q ss_pred CCHHHHHhhCCCCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceE
Q psy9443 6 LSWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 6 ~~~~~~~~~l~~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~ 53 (127)
.+.+++++.+.++..+.+++.+.+ .+|....++++.+.+++.|+..
T Consensus 126 ~d~~~l~~~l~~~~~lv~~~~~~n--~tG~~~~~~~I~~l~~~~~~~~ 171 (353)
T TIGR03235 126 IDVDELADAIRPDTLLVSIMHVNN--ETGSIQPIREIAEVLEAHEAFF 171 (353)
T ss_pred CCHHHHHHhCCCCCEEEEEEcccC--CceeccCHHHHHHHHHHcCCEE
Confidence 466788887764444444454443 2566777888988888888633
No 133
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.63 E-value=2e+02 Score=18.26 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=20.3
Q ss_pred eCcHHHHHHHHHHHhhcCceEEEe
Q psy9443 33 SGPPAAIDKFVAELSAEGVFAKKV 56 (127)
Q Consensus 33 sG~~~~i~~~~~~l~~~g~~~~~L 56 (127)
+|....+.+..+.++++|++..-+
T Consensus 63 sg~~~~~~~~~~~ak~~g~~vi~i 86 (131)
T PF01380_consen 63 SGETRELIELLRFAKERGAPVILI 86 (131)
T ss_dssp SSTTHHHHHHHHHHHHTTSEEEEE
T ss_pred cccchhhhhhhHHHHhcCCeEEEE
Confidence 788889989889999999887444
No 134
>PRK14435 acylphosphatase; Provisional
Probab=22.41 E-value=2.1e+02 Score=17.92 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=20.0
Q ss_pred eeCCCc---eEEeCcHHHHHHHHHHHhh
Q psy9443 24 HNNVDS---VTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 24 ~N~p~~---~vvsG~~~~i~~~~~~l~~ 48 (127)
-|.+.. +++.|+.+.++++.+.|++
T Consensus 35 ~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 62 (90)
T PRK14435 35 MNMDDGSVFIHAEGDENALRRFLNEVAK 62 (90)
T ss_pred EECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 455443 6789999999999999984
No 135
>PRK14448 acylphosphatase; Provisional
Probab=22.34 E-value=2e+02 Score=18.01 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=20.2
Q ss_pred eeCCC---ceEEeCcHHHHHHHHHHHhh
Q psy9443 24 HNNVD---SVTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 24 ~N~p~---~~vvsG~~~~i~~~~~~l~~ 48 (127)
.|-++ .+++.|+.++++.+.+.|+.
T Consensus 35 ~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 62 (90)
T PRK14448 35 KNRPDGSVEVVAVGSDAQIAAFRDWLQH 62 (90)
T ss_pred EECCCCCEEEEEEeCHHHHHHHHHHHHh
Confidence 45555 36789999999999999984
No 136
>PRK01002 nickel responsive regulator; Provisional
Probab=22.29 E-value=1.9e+02 Score=19.88 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=24.7
Q ss_pred ceEEeCcHHHHHHHHHHHhhc-CceEEEeec
Q psy9443 29 SVTISGPPAAIDKFVAELSAE-GVFAKKVAS 58 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~~-g~~~~~L~v 58 (127)
.+++-|+.+.|.+|.++|... |++..+|.+
T Consensus 102 vivv~G~~~~I~~l~~kL~~lkGV~~~kl~~ 132 (141)
T PRK01002 102 VIVVRGDAKEIRELTEKLMALKGVKHVKLTT 132 (141)
T ss_pred EEEEEcCHHHHHHHHHHHhCcCCeeEEEEEE
Confidence 478899999999999999875 777766654
No 137
>TIGR00325 lpxC UDP-3-0-acyl N-acetylglucosamine deacetylase. UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli, LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability.
Probab=22.20 E-value=1.9e+02 Score=22.65 Aligned_cols=61 Identities=11% Similarity=0.198 Sum_probs=46.3
Q ss_pred eCCCceEEeC---cHHHHHHHHHHHhhcCceEEEeeccCccccccccccHHHHHhhhhhcccccc
Q psy9443 25 NNVDSVTISG---PPAAIDKFVAELSAEGVFAKKVASSGFTGKLDWTGNWISYIDTMLQFSILGI 86 (127)
Q Consensus 25 N~p~~~vvsG---~~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~~~~~~~~~~d~ll~~~v~~~ 86 (127)
+....++|+- ....|+.+.+.|...||.-..+.++++- -+-+++...+|++.+.+..+..+
T Consensus 58 ~t~l~T~L~~~g~~V~TVEHLmAAL~glgIDN~~Ieidg~E-vPIlDGSa~~fv~~i~~aGi~~q 121 (297)
T TIGR00325 58 DTMLCTELGNEGARISTVEHLLAALAALGIDNLRIEVNAPE-IPIMDGSALPFLYLLLDAGIREL 121 (297)
T ss_pred cccceeEEecCCeEEEeHHHHHHHHHhCCCceEEEEeCCCC-CCccCCchHHHHHHHHhcCCeec
Confidence 4455566652 3357899999999999988888888874 67888888999988877665544
No 138
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=22.10 E-value=84 Score=22.59 Aligned_cols=27 Identities=37% Similarity=0.552 Sum_probs=21.3
Q ss_pred CCceEEeCcHHHHHHHHHHHhhcCceE
Q psy9443 27 VDSVTISGPPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 27 p~~~vvsG~~~~i~~~~~~l~~~g~~~ 53 (127)
...+.++|+..-++.+.+.|++.|+.-
T Consensus 193 ~~~v~~CGp~~~~~~~~~~l~~~G~~~ 219 (227)
T cd06213 193 ATEAYLCGPPAMIDAAIAVLRALGIAR 219 (227)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCH
Confidence 456788888888888888888887743
No 139
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=21.78 E-value=1.5e+02 Score=21.73 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.1
Q ss_pred CceEEeCcHHHHHHHHHHHhhcCceE
Q psy9443 28 DSVTISGPPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 28 ~~~vvsG~~~~i~~~~~~l~~~g~~~ 53 (127)
..+.++|+.+-++.+.+.|++.|+..
T Consensus 181 ~~vyiCGP~~m~~~~~~~l~~~Gv~~ 206 (248)
T cd06219 181 DLVIAIGPPIMMKAVSELTRPYGIPT 206 (248)
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCE
Confidence 46889999999999999999888753
No 140
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=21.73 E-value=1.1e+02 Score=20.97 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=32.8
Q ss_pred HHHHhhCCCCeEEEEeeCCCceEE---eCcHHHHHHHHHHHhhcCceEEEeeccCc
Q psy9443 9 EEVKARAPADIVAACHNNVDSVTI---SGPPAAIDKFVAELSAEGVFAKKVASSGF 61 (127)
Q Consensus 9 ~~~~~~l~~~v~iA~~N~p~~~vv---sG~~~~i~~~~~~l~~~g~~~~~L~v~~a 61 (127)
+++++.+.+.- +...-.+..++| +.+++...++.+++++.|+.+.--+|.+.
T Consensus 69 ~~v~~v~~~~~-i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg 123 (163)
T PF03446_consen 69 DAVEAVLFGEN-ILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHHHCTT-HGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESH
T ss_pred hhhhhhhhhhH-HhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecc
Confidence 44444443211 444446677777 66777888999999999988877777654
No 141
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=21.69 E-value=86 Score=23.42 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=25.8
Q ss_pred CceEEeCcHHHHHHHHHHHhhcCceEEEeecc
Q psy9443 28 DSVTISGPPAAIDKFVAELSAEGVFAKKVASS 59 (127)
Q Consensus 28 ~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v~ 59 (127)
..+.++|++.-++++.+.|++.|+...++.++
T Consensus 191 ~~v~lCGp~~mv~~~~~~L~~~Gv~~~~i~~~ 222 (261)
T TIGR02911 191 VQAIVVGPPIMMKFTVQELLKKGIKEENIWVS 222 (261)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 45889999999999999999999865554443
No 142
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=21.51 E-value=1.3e+02 Score=21.55 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=23.5
Q ss_pred CceEEeCcHHHHHHHHHHHhhcCceEEEe
Q psy9443 28 DSVTISGPPAAIDKFVAELSAEGVFAKKV 56 (127)
Q Consensus 28 ~~~vvsG~~~~i~~~~~~l~~~g~~~~~L 56 (127)
..+.++|+..-++.+.+.|++.|+.-.++
T Consensus 194 ~~v~icGp~~m~~~~~~~l~~~G~~~~~i 222 (228)
T cd06209 194 VDVYLCGPPPMVDAVRSWLDEQGIEPANF 222 (228)
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCCHHHE
Confidence 35889999999999999999988754333
No 143
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=21.50 E-value=1.2e+02 Score=16.89 Aligned_cols=18 Identities=44% Similarity=0.593 Sum_probs=14.8
Q ss_pred CceEEeCcHHHHHHHHHH
Q psy9443 28 DSVTISGPPAAIDKFVAE 45 (127)
Q Consensus 28 ~~~vvsG~~~~i~~~~~~ 45 (127)
..++|+|+.+++++..+.
T Consensus 42 ~~v~I~G~~~~v~~A~~~ 59 (60)
T PF00013_consen 42 DIVTISGSPEQVEKAKKM 59 (60)
T ss_dssp EEEEEEESHHHHHHHHHH
T ss_pred EEEEEEeCHHHHHHHHhh
Confidence 479999999999887654
No 144
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=21.49 E-value=1.4e+02 Score=21.08 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=21.5
Q ss_pred eCcHHHHHHHHHHHhhcCceEEEee
Q psy9443 33 SGPPAAIDKFVAELSAEGVFAKKVA 57 (127)
Q Consensus 33 sG~~~~i~~~~~~l~~~g~~~~~L~ 57 (127)
||.+.-++++..+|+++|.+.--++
T Consensus 13 SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 13 SGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred CChhhHHHHHHHHHHhCCcEEEEEE
Confidence 8999999999999999998665554
No 145
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=21.32 E-value=1.4e+02 Score=21.31 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=21.9
Q ss_pred CceEEeCcHHHHHHHHHHHhhcCceE
Q psy9443 28 DSVTISGPPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 28 ~~~vvsG~~~~i~~~~~~l~~~g~~~ 53 (127)
..+-++|++.-++.+.+.|++.|+..
T Consensus 198 ~~v~icGp~~m~~~~~~~l~~~gv~~ 223 (231)
T cd06215 198 RTVFVCGPAGFMKAVKSLLAELGFPM 223 (231)
T ss_pred CeEEEECCHHHHHHHHHHHHHcCCCH
Confidence 46889999999999999999888743
No 146
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=21.29 E-value=2.2e+02 Score=21.05 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=27.6
Q ss_pred CCHHHHHhhCCCCeEE---EEee--CCCceEE--eCcHHHHHHHH--HHHhhc--CceEEEeec
Q psy9443 6 LSWEEVKARAPADIVA---ACHN--NVDSVTI--SGPPAAIDKFV--AELSAE--GVFAKKVAS 58 (127)
Q Consensus 6 ~~~~~~~~~l~~~v~i---A~~N--~p~~~vv--sG~~~~i~~~~--~~l~~~--g~~~~~L~v 58 (127)
++.+++...|..++.| |.-+ ..-.+|+ +|+...++.+. +.|++. +++.|.++|
T Consensus 8 ls~eeA~~hc~~G~~iW~wAS~d~g~ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNV 71 (203)
T PF09363_consen 8 LSMEEARAHCAAGAGIWDWASTDQGEEPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNV 71 (203)
T ss_dssp S-HHHHHHHHHHSEEE-CCC-SSSTTT-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEE
T ss_pred CCHHHHHHHHHcCCeEEEeccCCCCCCCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEE
Confidence 5677777777522222 2211 1112343 78887777655 446666 677888886
No 147
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=21.25 E-value=1.4e+02 Score=21.16 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=21.3
Q ss_pred CceEEeCcHHHHHHHHHHHhhcCceE
Q psy9443 28 DSVTISGPPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 28 ~~~vvsG~~~~i~~~~~~l~~~g~~~ 53 (127)
..+-++|++.-++.+.+.|.+.|+..
T Consensus 187 ~~vyiCGp~~m~~~~~~~l~~~G~~~ 212 (218)
T cd06196 187 QHFYVCGPPPMEEAINGALKELGVPE 212 (218)
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCH
Confidence 46788999998899999898888743
No 148
>PRK14441 acylphosphatase; Provisional
Probab=20.83 E-value=1.9e+02 Score=18.20 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=20.1
Q ss_pred eeCCCc---eEEeCcHHHHHHHHHHHhh
Q psy9443 24 HNNVDS---VTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 24 ~N~p~~---~vvsG~~~~i~~~~~~l~~ 48 (127)
-|.+.- +.+.|+.+.++.+.+.|+.
T Consensus 38 ~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 65 (93)
T PRK14441 38 RNLPDGRVEAEAEGERAAVGALVRWCHA 65 (93)
T ss_pred EECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 455544 6689999999999999984
No 149
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.64 E-value=95 Score=18.39 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=14.0
Q ss_pred HHHHHhhcCceEEEeecc
Q psy9443 42 FVAELSAEGVFAKKVASS 59 (127)
Q Consensus 42 ~~~~l~~~g~~~~~L~v~ 59 (127)
....|...||++.+++|-
T Consensus 15 ~A~~La~~GIRFVpiPv~ 32 (61)
T PF07131_consen 15 MAHSLAHIGIRFVPIPVV 32 (61)
T ss_pred HHHHHHHcCceeeccccc
Confidence 345788899999998864
No 150
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=20.58 E-value=1.2e+02 Score=18.72 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=14.6
Q ss_pred CcHHHHHHHHHHHhhcCceE
Q psy9443 34 GPPAAIDKFVAELSAEGVFA 53 (127)
Q Consensus 34 G~~~~i~~~~~~l~~~g~~~ 53 (127)
.+.+.++++.+++++.|+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~ 101 (126)
T cd08346 82 PSEASLDAWRERLRAAGVPV 101 (126)
T ss_pred CCHHHHHHHHHHHHHcCCcc
Confidence 44557888888888888754
No 151
>KOG4180|consensus
Probab=20.47 E-value=1.2e+02 Score=24.36 Aligned_cols=106 Identities=20% Similarity=0.194 Sum_probs=57.2
Q ss_pred cCCHHHHHhhCCCC-eEEEEeeCCCceEEeC---cHHHHHHHHHHHhhcCceEEEeeccCccccccccccHHHHHhh---
Q psy9443 5 GLSWEEVKARAPAD-IVAACHNNVDSVTISG---PPAAIDKFVAELSAEGVFAKKVASSGFTGKLDWTGNWISYIDT--- 77 (127)
Q Consensus 5 ~~~~~~~~~~l~~~-v~iA~~N~p~~~vvsG---~~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~~~~~~~~~~d~--- 77 (127)
+++++++.+.|..+ -.+ +-+++- ...++..+.++|.+.|+..+...=..-+|-+.|.+-.++.-..
T Consensus 46 ~lspdql~q~L~srgtdv-------~~ll~~hKvhkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTf 118 (395)
T KOG4180|consen 46 GLSPDQLLQYLESRGTDV-------GRLLSKHKVHKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTF 118 (395)
T ss_pred CCCHHHHHHHHHhcCchH-------HHHHHHhHHHHHHHHHHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccce
Confidence 67888888888611 000 001111 2468888999999999988776544445556666533332210
Q ss_pred hh--------hccccccCcccccCceeeeeeEECchhhHHHHhhhcCC
Q psy9443 78 ML--------QFSILGINTRELYLPTRMQRVCIDPAKHKALVETLSGD 117 (127)
Q Consensus 78 ll--------~~~v~~~~~~~~~~p~~i~~~~~~pv~~~~~v~~~~~~ 117 (127)
|+ ..+++|-+++....-.++.=-...|.++.++|+++..+
T Consensus 119 L~Aasrv~~~~~PViGvNtDP~~Seg~lcL~~~~~~n~~~al~k~~sg 166 (395)
T KOG4180|consen 119 LLAASRVIDDSKPVIGVNTDPTGSEGHLCLPDKYPSNPAGALCKLTSG 166 (395)
T ss_pred eehhhhhhccCCceeeecCCCCcCcceEeccccCCCCcHHHHHHHHhc
Confidence 11 12344444332222223333345667788888887544
No 152
>PRK15405 ethanolamine utilization protein EutL; Provisional
Probab=20.34 E-value=2.3e+02 Score=21.23 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=26.4
Q ss_pred CCeEEEEeeCCCc------eEEeCcHHHHHHHHHHHhh
Q psy9443 17 ADIVAACHNNVDS------VTISGPPAAIDKFVAELSA 48 (127)
Q Consensus 17 ~~v~iA~~N~p~~------~vvsG~~~~i~~~~~~l~~ 48 (127)
.+|++..|-+|.+ ..|+|+..++++.....++
T Consensus 168 A~V~~~~~~~P~~~t~f~~~~ltG~~~A~r~A~~a~~e 205 (217)
T PRK15405 168 ADVQLVTFVGPPSETNFGGALLTGSQSACKAACNAFTD 205 (217)
T ss_pred cCceEEEEeCCCCCceecCeeEEeCHHHHHHHHHHHHH
Confidence 4799999998866 6899999999888777665
No 153
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=20.32 E-value=1.4e+02 Score=19.11 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=18.2
Q ss_pred ceEEeCcHHHHHHHHHHHhhc
Q psy9443 29 SVTISGPPAAIDKFVAELSAE 49 (127)
Q Consensus 29 ~~vvsG~~~~i~~~~~~l~~~ 49 (127)
.++..|+.++++.+.+.|+.-
T Consensus 45 eiva~G~~~~v~~~~~~l~~g 65 (92)
T COG1254 45 EIVAEGPDEAVEKFIEWLRKG 65 (92)
T ss_pred EEEEEcCHHHHHHHHHHHHhC
Confidence 378899999999999999843
No 154
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.32 E-value=2e+02 Score=16.96 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhcCceEEEeeccCc
Q psy9443 36 PAAIDKFVAELSAEGVFAKKVASSGF 61 (127)
Q Consensus 36 ~~~i~~~~~~l~~~g~~~~~L~v~~a 61 (127)
....-.+.+.|++.|+.++.++++..
T Consensus 11 t~~a~~~ek~lk~~gi~~~liP~P~~ 36 (73)
T PF11823_consen 11 THDAMKAEKLLKKNGIPVRLIPTPRE 36 (73)
T ss_pred HHHHHHHHHHHHHCCCcEEEeCCChh
Confidence 34445678899999999999988755
No 155
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.28 E-value=1.5e+02 Score=18.99 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=21.6
Q ss_pred eCcHHHHHHHHHHHhhcCceEEEee
Q psy9443 33 SGPPAAIDKFVAELSAEGVFAKKVA 57 (127)
Q Consensus 33 sG~~~~i~~~~~~l~~~g~~~~~L~ 57 (127)
+|..+.+.+..+.++++|++..-+.
T Consensus 57 sG~t~~~~~~~~~a~~~g~~vi~iT 81 (128)
T cd05014 57 SGETDELLNLLPHLKRRGAPIIAIT 81 (128)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEe
Confidence 8999999999999999998776553
No 156
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=20.27 E-value=1.8e+02 Score=21.90 Aligned_cols=45 Identities=27% Similarity=0.191 Sum_probs=32.9
Q ss_pred cCCHHHHHhhCC--CCeEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCce
Q psy9443 5 GLSWEEVKARAP--ADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVF 52 (127)
Q Consensus 5 ~~~~~~~~~~l~--~~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~ 52 (127)
+.+.+++++.+. ++..+..+++|+. .|..-.++++.+.+++.|+.
T Consensus 139 ~i~~~~l~~~l~~~~~~k~v~l~~p~~---~G~~~dl~~I~~~~~~~g~~ 185 (294)
T cd00615 139 GIPPETFKKALIEHPDAKAAVITNPTY---YGICYNLRKIVEEAHHRGLP 185 (294)
T ss_pred CCCHHHHHHHHHhCCCceEEEEECCCC---CCEecCHHHHHHHHHhcCCe
Confidence 467888888874 3455555666743 68777899999999998863
No 157
>PRK08960 hypothetical protein; Provisional
Probab=20.21 E-value=4.2e+02 Score=20.59 Aligned_cols=58 Identities=19% Similarity=0.151 Sum_probs=35.7
Q ss_pred CCHHHHHhhCCCC---eEEEEeeCCCceEEeCcHHHHHHHHHHHhhcCceEEEeeccCcccccccc
Q psy9443 6 LSWEEVKARAPAD---IVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSGFTGKLDWT 68 (127)
Q Consensus 6 ~~~~~~~~~l~~~---v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~g~~~~~L~v~~a~h~~~~~ 68 (127)
++.+++++.+..+ +.+.+-|.|.-.+++ .+.++++.+.+++.|+.. =++-+++...++
T Consensus 153 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--~~~~~~l~~~~~~~~~~l---i~De~Y~~~~~~ 213 (387)
T PRK08960 153 LTPALVERHWNADTVGALVASPANPTGTLLS--RDELAALSQALRARGGHL---VVDEIYHGLTYG 213 (387)
T ss_pred CCHHHHHHHhCccceEEEEECCCCCCCcCcC--HHHHHHHHHHHHHcCCEE---EEEccccccccC
Confidence 4567777766532 455555666666664 678889998888887643 234444434444
No 158
>PF14611 SLS: Mitochondrial inner-membrane-bound regulator
Probab=20.06 E-value=3.2e+02 Score=19.52 Aligned_cols=44 Identities=9% Similarity=0.170 Sum_probs=36.5
Q ss_pred CeEEEEeeCCCceEEeCcHHHHHHHHHHHhhc--CceEEEeeccCc
Q psy9443 18 DIVAACHNNVDSVTISGPPAAIDKFVAELSAE--GVFAKKVASSGF 61 (127)
Q Consensus 18 ~v~iA~~N~p~~~vvsG~~~~i~~~~~~l~~~--g~~~~~L~v~~a 61 (127)
++.|...-+.+.+.|+|++..++.+...+.+- +++...++++..
T Consensus 56 ~~~I~~~~~~~~i~I~g~k~~~~~i~~~i~~~l~~i~~~~i~l~~~ 101 (210)
T PF14611_consen 56 GAKIEVSRSENRIRITGTKSTAEYIEASINEILSNIRTEEIDLSPI 101 (210)
T ss_pred CceEEEecCCcEEEEEccHHHHHHHHHHHHHHHhhcEEEEEecchh
Confidence 57888888889999999999999999998874 677777777633
No 159
>KOG3360|consensus
Probab=20.03 E-value=1.3e+02 Score=19.69 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=22.3
Q ss_pred eeCCCceE---EeCcHHHHHHHHHHHhhcCc
Q psy9443 24 HNNVDSVT---ISGPPAAIDKFVAELSAEGV 51 (127)
Q Consensus 24 ~N~p~~~v---vsG~~~~i~~~~~~l~~~g~ 51 (127)
-|+..-+| +.|+.+.++++...|...|-
T Consensus 41 ~Nt~~GtvkG~leGp~~~vd~mk~wl~~~gs 71 (98)
T KOG3360|consen 41 MNTSEGTVKGQLEGPPEKVDEMKEWLLTRGS 71 (98)
T ss_pred EecCCceEEEEEeCCHHHHHHHHHHHHhcCC
Confidence 45555554 58999999999999998874
No 160
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=20.02 E-value=1.2e+02 Score=19.81 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=16.4
Q ss_pred eEEeCcHHHHHHHHHHHhhcCceEEEee
Q psy9443 30 VTISGPPAAIDKFVAELSAEGVFAKKVA 57 (127)
Q Consensus 30 ~vvsG~~~~i~~~~~~l~~~g~~~~~L~ 57 (127)
+.+||+ .+...+...|++.|.+...+-
T Consensus 100 vLvSgD-~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 100 VLVSGD-SDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp EEE----GGGHHHHHHHHHH--EEEEEE
T ss_pred EEEECc-HHHHHHHHHHHHcCCEEEEEE
Confidence 456888 557778888889998777765
Done!