RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9443
(127 letters)
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 86.5 bits (215), Expect = 4e-21
Identities = 37/60 (61%), Positives = 45/60 (75%)
Query: 1 MAAVGLSWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSG 60
MAAVGLSWEE K R P +V ACHN+ D+VTISGP A + +FV +L EGVFAK+V + G
Sbjct: 622 MAAVGLSWEECKQRCPPGVVPACHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTGG 681
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 85.3 bits (211), Expect = 1e-20
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 1 MAAVGLSWEEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSG 60
MAAVGLSWEE K R P IV ACHN+ D+VTISGP AA+ +F+ +L E VF K+V + G
Sbjct: 620 MAAVGLSWEECKQRCPPGIVPACHNSKDTVTISGPQAAMSEFLQQLKREDVFVKEVRTGG 679
Query: 61 F 61
Sbjct: 680 I 680
Score = 66.8 bits (163), Expect = 3e-14
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 36 PAAIDKFVAELSAEG-----VFA--KKVASSGFTGKLDWTGNWISYIDTMLQFSILGINT 88
+ +L G F + G G+L W +W+S++D ML SIL
Sbjct: 986 RLSQGDVYKDLRLRGYDYGPFFQLVLESDLEGNRGRLQWNDSWVSFLDAMLHMSILAPGQ 1045
Query: 89 RELYLPTRMQRVCIDPAKHKALVETLSGDKKTVPVAMYR 127
LYLPTR + IDP H+ + TL + V + R
Sbjct: 1046 LGLYLPTRFTSIRIDPVTHRQKLYTLQDTTQAADVVVDR 1084
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 53.4 bits (129), Expect = 2e-09
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 1 MAAVGLSWEEVKAR---APADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVA 57
MA+ GL E+ R + A N SV ++G +D+ +AE AE A+++
Sbjct: 680 MASFGLGTEQAAERIGRFAGALSIASVNGPRSVVVAGESGPLDELIAECEAEAHKARRIP 739
Query: 58 SS 59
Sbjct: 740 VD 741
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 53.0 bits (128), Expect = 2e-09
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 1 MAAVGLSWEEVKAR---APADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVA 57
MAAV L V+ R + A N SV +SG P A+ F + +AEG+ + +
Sbjct: 664 MAAVALGEAAVRERLRPWQDRLSVAAVNGPRSVVVSGEPGALRAFSEDCAAEGIRVRDID 723
Query: 58 SS 59
Sbjct: 724 VD 725
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 48.5 bits (116), Expect = 8e-08
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 1 MAAVGLSWEEVKARAPADIVA-ACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASS 59
M ++ + A A N V ++G +D+ G+ A +A S
Sbjct: 215 MLSLRADLAAARELAAGTGAVVAVDNGERHVVVAGTRPELDRVAEAARHAGIEATPLAVS 274
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 2e-06
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 16/70 (22%)
Query: 1 MAAV-GLSWEEVK-------ARAPAD--IVAACHNNVDSVTISGPPAAIDKFVAELSAEG 50
M ++ L+ E+V+ + PA + + N ++ +SGPP ++ L
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL---- 393
Query: 51 VFAKKVASSG 60
K A SG
Sbjct: 394 --RKAKAPSG 401
Score = 33.9 bits (77), Expect = 0.009
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 17/71 (23%)
Query: 1 MAAV-------GLSWEEVK------ARAPADIV-AACHNNVDS-VTISGPPAAIDKFVAE 45
M A+ S E ++ + +V +N + +G A+D
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNV 1868
Query: 46 LSAEGVFAKKV 56
L+ + +K+
Sbjct: 1869 LNFIKL--QKI 1877
Score = 27.3 bits (60), Expect = 1.6
Identities = 16/98 (16%), Positives = 39/98 (39%), Gaps = 18/98 (18%)
Query: 38 AIDKFVAELSAEGVFAKKVASSGFTGKLDWTGNWI---------SYIDTMLQFSILGINT 88
+ ++EL + A+KV + G + W+ Y+ ++ S I
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGL----N-ILEWLENPSNTPDKDYLLSI-PISCPLIGV 243
Query: 89 REL--YLPTRMQRVCIDPAKHKALVETLSGDKKTVPVA 124
+L Y+ T + + P + ++ ++ +G + + A
Sbjct: 244 IQLAHYVVTA-KLLGFTPGELRSYLKGATGHSQGLVTA 280
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium
cellulosum} PDB: 3rgi_A
Length = 281
Score = 35.5 bits (83), Expect = 0.002
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 1 MAAV-GLSWEEVK---ARAPADIV-AACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKK 55
MAAV GL E V+ + A V A N+ V ISG I + A G AKK
Sbjct: 123 MAAVIGLDEERVRELLDQNGATAVDIANLNSPSQVVISGAKDEIARLQVPFEAAG--AKK 180
Query: 56 V 56
Sbjct: 181 Y 181
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid,
decode biostructures, dried seaweed, acyltran
transferase; 2.30A {Burkholderia pseudomallei}
Length = 394
Score = 33.8 bits (78), Expect = 0.010
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 1 MAAV-GLSWEEVKA----RAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKK 55
MAA+ S E+++ D A N + ISGP I + L +
Sbjct: 129 MAAIVNASREQIERTLDEHGLVDTAIANDNTPSQLVISGPAHEIAR-AEALFQHD--RVR 185
Query: 56 V 56
Sbjct: 186 Y 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.013
Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 44/147 (29%)
Query: 9 EEVKARAP---ADIVAACHN-----------NVDSVTISGPPAAIDKFVAELSAE----- 49
EV P + I + + N D +T I+ + L
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-----TIIESSLNVLEPAEYRKM 374
Query: 50 ----GVFAKKVASSGFTGKLDWTGNWISYIDTML------QFSILGINTRE-------LY 92
VF L W + D M+ ++S++ +E +Y
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFD--VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 93 LPTRMQRVCIDPAKHKALVETLSGDKK 119
L +++ + A H+++V+ + K
Sbjct: 433 LELKVKLE-NEYALHRSIVDHYNIPKT 458
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT,
transferase; 2.50A {Helicobacter pylori}
Length = 321
Score = 33.3 bits (77), Expect = 0.013
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 1 MAAV-GLSWEEVKA--RAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKV 56
M V G+S E + + + ++ A N V ++G + L G AK+V
Sbjct: 144 MMVVLGVSEESLLSLCQRTKNVWCANFNGGMQVVLAGVKDDLKALEPTLKEMG--AKRV 200
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP
transacylase, , nucleophili fatty acids biosynthesis;
2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A
Length = 303
Score = 32.5 bits (75), Expect = 0.020
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 1 MAAV-GLSWEEVKAR-APADIVAACHNNVDSVTISGPPAAIDKFVAELSAEG 50
M+AV G EV +R D+V A N + +G A++K + A+
Sbjct: 132 MSAVLGGDETEVLSRLEQLDLVPANRNAAGQIVAAGRLTALEKLAEDPPAKA 183
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase;
acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1
d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A
3hjv_A*
Length = 309
Score = 30.5 bits (70), Expect = 0.093
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 1 MAAV-GLSWEEVKA----RAPADIV-AACHNNVDSVTISGPPAAIDKFVAELSAEGVFAK 54
MAA+ GL + A +V N+ V I+G A+++ A A G AK
Sbjct: 132 MAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACKAAG--AK 189
Query: 55 KV 56
+
Sbjct: 190 RA 191
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty
acid synthesis, malonyl-COA: acyl carrier protein TRAN
(MCAT), FABD; 1.46A {Staphylococcus aureus}
Length = 316
Score = 30.6 bits (70), Expect = 0.10
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 1 MAAV-GLSWEEV-----KARAPADIV-AACHNNVDSVTISGPPAAIDKFVAELSAEGVFA 53
MAAV GL +++V + I+ A N + +SG A ID+ V + + G A
Sbjct: 137 MAAVLGLDFDKVDEICKSLSSDDKIIEPANINCPGQIVVSGHKALIDELVEKGKSLG--A 194
Query: 54 KKV 56
K+V
Sbjct: 195 KRV 197
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium; 1.79A {Legionella pneumophila
subsp}
Length = 265
Score = 29.9 bits (68), Expect = 0.18
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 31 TISGPPAAIDKFVAELSAEGVFAK---KVASSGF 61
+G ++ F L ++ FA K
Sbjct: 59 GFAGNREQMNVFYDYLRSDSRFADLHFKETYDNK 92
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty
acid/phospholipid metabolism, transferase; HET: MSE;
1.50A {Coxiella burnetii}
Length = 316
Score = 29.8 bits (68), Expect = 0.20
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 1 MAAV-GLSWEEVKA----RAPADIV-AACHNNVDSVTISGPPAAIDKFVAELSAEGVFAK 54
M A+ GL+ E+++ A +V A N+ D ISG A+D+ + EG AK
Sbjct: 136 MGAIIGLNEAEIESICENAALGQVVQPANLNSTDQTVISGHSEAVDRALNMAKTEG--AK 193
Query: 55 KV 56
Sbjct: 194 IA 195
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid,
acyl-carrier-protein S-malonyltransferase,
acyltransferase, transferase; 2.05A {Burkholderia
pseudomallei 1710B}
Length = 318
Score = 29.4 bits (67), Expect = 0.27
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 1 MAAV-GLSWEEV-----KARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAK 54
MAA+ GL + V +A A + A N V I+G A I+K +G AK
Sbjct: 138 MAAILGLDDDTVRAVCAEASATGVVEAVNFNAPAQVVIAGTKAGIEKACEIAKEKG--AK 195
Query: 55 KV 56
+
Sbjct: 196 RA 197
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase,
structural genomics, NPPSFA; 2.10A {Thermus
thermophilus}
Length = 305
Score = 29.4 bits (67), Expect = 0.27
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 1 MAAV-GLSWEEVKAR-APADIV-AACHNNVDSVTISGPPAAIDKFVAELSAEG 50
MAAV L EE++ + V A N + ISG A+++ L
Sbjct: 129 MAAVLKLPLEEIQKALEGLEGVEIANLNAPEQTVISGRRQAVEEAAERLKERR 181
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics,
protein structure initiative; 2.10A {Clostridium
perfringens}
Length = 336
Score = 29.4 bits (67), Expect = 0.30
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 1 MAAV-GLSWEEVK---ARAPAD--IVAACHNNVDSVTISGPPAAIDKFVAELSAEG 50
M AV ++ E+V ++ + A +N+ + ISG A++K + + G
Sbjct: 131 MVAVLRMTPEQVDEIIEKSSPYGIVEGANYNSPGQIVISGELVALEKAMEFIKEVG 186
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural
genomics center for infectious disease, S bartonella,
CAT-scratch disease; 1.60A {Bartonella henselae}
Length = 318
Score = 29.0 bits (66), Expect = 0.34
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 1 MAAV-GLSWEEVK-----ARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAK 54
MAA+ GL ++V+ A N + ISG A++ V S +G AK
Sbjct: 138 MAALIGLDEKDVEEICEIVAEEGLCQIANDNGGGQIVISGEAKAVETAVEVASQKG--AK 195
Query: 55 KV 56
+
Sbjct: 196 RA 197
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD,
xanthomonas oryzae PV. ORYZ KACC10331, transferase;
1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A*
Length = 314
Score = 29.0 bits (66), Expect = 0.35
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 1 MAAV-GLSWEEVK---ARAPAD--IVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAK 54
MAAV G V A A +V A N+ + I G AA+D+ +A L+ G +
Sbjct: 134 MAAVLGAEDAVVLEVCAEAAGSQVVVPANFNSPGQIVIGGDAAAVDRALALLAERG--VR 191
Query: 55 KV 56
K
Sbjct: 192 KA 193
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis,
malonyl-COA, acyl carrier protein TRAN (MCAT), FABD,
acyltransferase; 2.10A {Streptococcus pneumoniae}
Length = 307
Score = 29.0 bits (66), Expect = 0.39
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 1 MAAV-GLSWEEV-----KARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAK 54
M AV E + KA + A +N + I+G A+D+ V L G AK
Sbjct: 130 MVAVLNTPVEVIEEACQKASELGVVTPANYNTPAQIVIAGEVVAVDRAVELLQEAG--AK 187
Query: 55 KV 56
++
Sbjct: 188 RL 189
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family,
nucleus, phosphoprotein, protein transport; HET: GTP;
2.92A {Homo sapiens}
Length = 1204
Score = 29.2 bits (64), Expect = 0.43
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 64 KLDWTGNWISYIDTMLQFSILGINTRELYL 93
K +W +W + + S G EL +
Sbjct: 125 KREWPQHWPDMLIELDTLSKQGETQTELVM 154
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE;
HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis}
PDB: 3vti_A
Length = 761
Score = 27.0 bits (60), Expect = 2.0
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 24 HNNVDSVTI--SGPPAAIDKFVAELSAE 49
+NN + I G I+ F+ E+
Sbjct: 43 YNNSSGLYIEVEGEEKDIEAFIREIKEN 70
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase,
lipid synthesis, mitochondrion transfer transferase;
HET: AE4; 1.55A {Homo sapiens}
Length = 339
Score = 26.8 bits (60), Expect = 2.1
Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 16/70 (22%)
Query: 1 MAAV-GLSWEEVKA------------RAPADIV-AACHNNVDSVTISGPPAAIDKFVAEL 46
M +V G + + + + D ISG A+
Sbjct: 157 MLSVLGQPQSKFNFACLEAREHCKSLGIENPVCEVSNYLFPDCRVISGHQEALRFLQKNS 216
Query: 47 SAEGVFAKKV 56
S ++
Sbjct: 217 SKFH--FRRT 224
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 95
Score = 25.9 bits (57), Expect = 2.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 28 DSVTISGPPAAIDKFVAEL 46
D+V I GP + ++K +L
Sbjct: 61 DTVVIRGPSSDVEKAKKQL 79
>2q1f_A Chondroitinase; alpha plus beta, lyase; 2.85A {Bacteroides
thetaiotaomicron}
Length = 1022
Score = 26.7 bits (58), Expect = 2.8
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 61 FTGKLDWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCID 103
F G W W+ Y M G+N + P R+ ID
Sbjct: 122 FKG---WRAAWVCYERDMQGTPEEGMNELRIVAPDAKGRLFID 161
>2jmb_A AGR_L_42P, hypothetical protein ATU4866; structural genomics,
ontario centre for structural proteomic unknown
function; NMR {Agrobacterium tumefaciens str}
Length = 79
Score = 25.2 bits (55), Expect = 3.3
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 45 ELSAEGVF--AKKVASSGFTGKLDWTGNWISYID 76
EL G + A+ S + G+ + G I+Y D
Sbjct: 19 ELLPNGRYDEARGNRKSAYQGRYEVRGAHINYWD 52
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 26.0 bits (56), Expect = 5.2
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 64 KLDWTGNWISYIDTMLQFSILGINTRELYL 93
K +W NW +I ++ S +N E +
Sbjct: 129 KQEWPQNWPEFIPELIGSSSSSVNVCENNM 158
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase;
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
1u2q_A
Length = 163
Score = 25.2 bits (56), Expect = 5.4
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 48 AEGVFAKKVASSGFTGKLDW----TGNW 71
AE +FA+++ G + TGNW
Sbjct: 21 AEKMFAQQLRHRGLGDAVRVTSAGTGNW 48
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 102
Score = 24.5 bits (53), Expect = 7.0
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 28 DSVTISGPPAAIDKFVAELSA 48
D +T+ GP + ++
Sbjct: 68 DKITLEGPTEDVSVAQEQIEG 88
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase;
HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP:
c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Length = 161
Score = 24.8 bits (55), Expect = 7.2
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 48 AEGVFAKKVASSGFTGKLDW-----TGNW 71
AE +F +V + + + T N+
Sbjct: 24 AEAIFKHEVEKANLENRFNKIDSFGTSNY 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.395
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,994,871
Number of extensions: 109978
Number of successful extensions: 293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 49
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)