RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9443
         (127 letters)



>d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of
          malonyl-CoA ACP transacylase {Streptomyces coelicolor
          A3(2) [TaxId: 100226]}
          Length = 62

 Score = 44.0 bits (104), Expect = 7e-08
 Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 2/57 (3%)

Query: 1  MAAV-GLSWEEVKAR-APADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKK 55
          M+A+ G   E   A      +  A  N    +  +G    +     +          
Sbjct: 4  MSALLGGDPEVSVAHLERLGLTPANVNGAGQIVAAGTMEQLAALNEDKPEGVRKVVP 60


>d1mlaa2 d.58.23.1 (A:128-197) Probable ACP-binding domain of
          malonyl-CoA ACP transacylase {Escherichia coli [TaxId:
          562]}
          Length = 70

 Score = 33.7 bits (77), Expect = 9e-04
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 1  MAAV-GLSWEEV-----KARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAK 54
          MAA+ GL    +     +A     +     N+   V I+G   A+++  A   A G  AK
Sbjct: 5  MAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACKAAG--AK 62

Query: 55 KV 56
          + 
Sbjct: 63 RA 64


>d1apsa_ d.58.10.1 (A:) Acylphosphatase {Horse (Equus caballus)
          [TaxId: 9796]}
          Length = 98

 Score = 26.0 bits (57), Expect = 0.66
 Identities = 5/28 (17%), Positives = 10/28 (35%)

Query: 23 CHNNVDSVTISGPPAAIDKFVAELSAEG 50
                +  + GP   ++   + LS  G
Sbjct: 42 TSKGTVTGQVQGPEEKVNSMKSWLSKVG 69


>d1u9la_ a.60.4.2 (A:) Transcription elongation protein NusA
          {Escherichia coli [TaxId: 562]}
          Length = 68

 Score = 24.2 bits (53), Expect = 1.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 37 AAIDKFVAELSAEGVFAKKVASSGFT 62
          AAID F   L  +  FA  +   GF+
Sbjct: 3  AAIDTFTKYLDIDEDFATVLVEEGFS 28


>d1urra_ d.58.10.1 (A:) Acylphosphatase 2 (Cg18505) {Fruit fly
          (Drosophila melanogaster) [TaxId: 7227]}
          Length = 97

 Score = 24.8 bits (54), Expect = 2.3
 Identities = 2/28 (7%), Positives = 6/28 (21%)

Query: 23 CHNNVDSVTISGPPAAIDKFVAELSAEG 50
            +      +  P   + +    L    
Sbjct: 41 TRDGTVKGQLEAPMMNLMEMKHWLENNR 68


>d1w9pa1 c.1.8.5 (A:39-298,A:361-433) Chitinase 1 {Aspergillus
           fumigatus [TaxId: 5085]}
          Length = 333

 Score = 24.7 bits (53), Expect = 4.0
 Identities = 5/15 (33%), Positives = 8/15 (53%)

Query: 60  GFTGKLDWTGNWISY 74
           G TG  + + N + Y
Sbjct: 305 GGTGVFEQSQNELDY 319


>d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId:
           562]}
          Length = 416

 Score = 24.6 bits (53), Expect = 4.3
 Identities = 9/53 (16%), Positives = 21/53 (39%)

Query: 9   EEVKARAPADIVAACHNNVDSVTISGPPAAIDKFVAELSAEGVFAKKVASSGF 61
           + + A+ P  ++A   +   +   +     I  F  +LS  G   + +  +G 
Sbjct: 302 QAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIASFQQQLSDMGYKFQFITLAGI 354


>d2acya_ d.58.10.1 (A:) Acylphosphatase {Cow (Bos taurus) [TaxId:
          9913]}
          Length = 98

 Score = 24.1 bits (52), Expect = 4.3
 Identities = 4/21 (19%), Positives = 8/21 (38%)

Query: 30 VTISGPPAAIDKFVAELSAEG 50
            + GP + +      L  +G
Sbjct: 49 GQLQGPASKVRHMQEWLETKG 69


>d1ll7a1 c.1.8.5 (A:36-292,A:355-427) Chitinase 1 {Fungus
           (Coccidioides immitis) [TaxId: 5501]}
          Length = 330

 Score = 24.4 bits (52), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 60  GFTGKLDWTGNWISY 74
           G TGKL+   N +SY
Sbjct: 302 GGTGKLEQRENELSY 316


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 473,895
Number of extensions: 19552
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 12
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.7 bits)