BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9444
         (395 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
 pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
 pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
 pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
          Length = 425

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 47/72 (65%)

Query: 303 KRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEH 362
           +RP+W++ SGMG+QW GM   L+ +  F  SI +S EA++     +  ++ S D  TF+ 
Sbjct: 91  ERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDD 150

Query: 363 ILNSFVSIAAVQ 374
           I++SFVS+ A+Q
Sbjct: 151 IVHSFVSLTAIQ 162



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 215 GLIESIDRAG-RPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPG 272
           GLI+ +   G RP    GH  G  EVAC YADG L+ E+ +L AYWRG+ I E  L PG
Sbjct: 164 GLIDLLSCMGLRPDGIVGHSLG--EVACGYADGCLSQEEAVLAAYWRGQCIKEAHLPPG 220


>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
           As A Framework For Inhibitor Design.
 pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
           As A Framework For Inhibitor Design.
 pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
           As A Framework For Inhibitor Design.
 pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
           As A Framework For Inhibitor Design
          Length = 965

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 47/72 (65%)

Query: 303 KRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEH 362
           +RP+W++ SGMG+QW GM   L+ +  F  SI +S EA++     +  ++ S D  TF+ 
Sbjct: 491 ERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDD 550

Query: 363 ILNSFVSIAAVQ 374
           I++SFVS+ A+Q
Sbjct: 551 IVHSFVSLTAIQ 562



 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 215 GLIESIDRAG-RPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPG 272
           GLI+ +   G RP    GH  G  EVAC YADG L+ E+ +L AYWRG+ I E  L PG
Sbjct: 564 GLIDLLSCMGLRPDGIVGHSLG--EVACGYADGCLSQEEAVLAAYWRGQCIKEAHLPPG 620


>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
 pdb|2JFK|B Chain B, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
 pdb|2JFK|C Chain C, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
 pdb|2JFK|D Chain D, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
          Length = 433

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 47/72 (65%)

Query: 303 KRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEH 362
           +RP+W++ SGMG+QW GM   L+ +  F  SI +S EA++     +  ++ S D  TF+ 
Sbjct: 91  ERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDD 150

Query: 363 ILNSFVSIAAVQ 374
           I++SFVS+ A+Q
Sbjct: 151 IVHSFVSLTAIQ 162



 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 215 GLIESIDRAG-RPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPG 272
           GLI+ +   G RP    GH  G  EVAC YADG L+ E+ +L AYWRG+ I E  L PG
Sbjct: 164 GLIDLLSCMGLRPDGIVGHSLG--EVACGYADGCLSQEEAVLAAYWRGQCIKEAHLPPG 220


>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
 pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
 pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
           Complex With Nadp
 pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
           Complex With Nadp
          Length = 2512

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%)

Query: 301 GEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTF 360
           G KRPVW++ SGMG+QW GM   L+ +  F  SI +S +AL+     +  ++ S D    
Sbjct: 487 GSKRPVWFICSGMGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLLSTDEAVL 546

Query: 361 EHILNSFVSIAAVQ 374
           + I++SFVS+ ++Q
Sbjct: 547 DDIVSSFVSLTSIQ 560



 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 231 GHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPG 272
           GH  G  EVAC YADG LT E+ +L +YWRG  I E  + PG
Sbjct: 579 GHSLG--EVACGYADGCLTQEEAVLSSYWRGYCIKEANVLPG 618


>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
           6- Deoxyerthronolide B Synthase
 pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
           6- Deoxyerthronolide B Synthase
          Length = 915

 Score = 35.0 bits (79), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 302 EKRPVWYVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEAL 341
           + R V ++F G GSQWAGM   LL   PVF   IR   E++
Sbjct: 530 DGRNVVFLFPGQGSQWAGMGAELLSSSPVFAGKIRACDESM 570


>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
           Module 5 From Debs.
 pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
           Module 5 From Debs.
 pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
           Module 5 From Debs.
 pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
           Module 5 From Debs.
 pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
           Module 5 From Debs.
 pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
           Module 5 From Debs
          Length = 917

 Score = 32.0 bits (71), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 303 KRPVWYVFSGMGSQWAGMVKGLLH-IPVFDQSIRKSAEAL 341
           +R V  VF G G+QW G  + LL    VF  SIR    AL
Sbjct: 550 RRGVAXVFPGQGAQWQGXARDLLRESQVFADSIRDCERAL 589


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,777,798
Number of Sequences: 62578
Number of extensions: 439310
Number of successful extensions: 952
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 934
Number of HSP's gapped (non-prelim): 21
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)