Query psy9444
Match_columns 395
No_of_seqs 264 out of 2552
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 19:30:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1202|consensus 99.9 1.1E-25 2.4E-30 244.4 9.1 198 131-341 455-691 (2376)
2 PF00698 Acyl_transf_1: Acyl t 99.9 9.8E-24 2.1E-28 207.8 -4.5 154 167-328 6-179 (318)
3 TIGR00128 fabD malonyl CoA-acy 99.8 1E-20 2.3E-25 182.1 6.9 154 167-326 9-183 (290)
4 smart00827 PKS_AT Acyl transfe 99.8 7.8E-21 1.7E-25 183.9 5.1 155 167-326 3-178 (298)
5 TIGR03131 malonate_mdcH malona 99.8 7E-20 1.5E-24 178.2 4.2 144 167-326 7-172 (295)
6 COG0331 FabD (acyl-carrier-pro 99.8 1.3E-19 2.7E-24 179.9 5.2 146 167-327 10-187 (310)
7 PLN02752 [acyl-carrier protein 99.7 8.5E-18 1.8E-22 167.8 9.1 154 167-325 46-228 (343)
8 TIGR02813 omega_3_PfaA polyket 99.7 7.1E-18 1.5E-22 202.0 2.7 159 168-335 588-785 (2582)
9 TIGR02816 pfaB_fam PfaB family 99.7 1E-16 2.2E-21 169.3 7.8 164 167-335 189-387 (538)
10 COG3321 Polyketide synthase mo 99.6 1.1E-16 2.3E-21 180.7 -0.2 244 95-343 443-724 (1061)
11 PF00698 Acyl_transf_1: Acyl t 99.4 3.9E-13 8.5E-18 132.7 3.9 84 307-392 1-87 (318)
12 KOG2926|consensus 99.2 4.3E-12 9.4E-17 126.1 4.0 147 168-329 71-256 (386)
13 KOG1202|consensus 99.2 2.5E-11 5.4E-16 134.1 9.4 119 272-392 467-585 (2376)
14 TIGR00128 fabD malonyl CoA-acy 99.2 2.1E-11 4.6E-16 117.5 7.1 83 305-392 2-86 (290)
15 PLN02752 [acyl-carrier protein 99.1 9.9E-11 2.2E-15 117.1 8.5 86 301-391 35-120 (343)
16 TIGR03131 malonate_mdcH malona 99.0 2.8E-10 6E-15 110.9 7.0 79 306-392 1-79 (295)
17 smart00827 PKS_AT Acyl transfe 99.0 3.7E-10 8E-15 109.5 7.7 81 310-392 1-85 (298)
18 TIGR02813 omega_3_PfaA polyket 98.9 3.8E-09 8.2E-14 128.1 7.9 88 303-392 578-677 (2582)
19 TIGR02816 pfaB_fam PfaB family 98.8 8.8E-09 1.9E-13 109.5 7.5 80 303-392 180-268 (538)
20 COG0331 FabD (acyl-carrier-pro 98.7 2.3E-08 5.1E-13 99.8 6.8 83 304-391 2-87 (310)
21 COG3321 Polyketide synthase mo 98.5 1.2E-07 2.6E-12 108.1 6.6 86 305-392 526-613 (1061)
22 KOG2926|consensus 98.1 1E-06 2.2E-11 88.4 2.6 78 305-387 63-140 (386)
23 cd07198 Patatin Patatin-like p 30.6 78 0.0017 28.3 4.4 34 222-257 23-56 (172)
24 PF09339 HTH_IclR: IclR helix- 30.2 38 0.00081 24.6 1.8 50 71-124 2-51 (52)
25 cd07207 Pat_ExoU_VipD_like Exo 26.2 1E+02 0.0022 27.7 4.4 35 222-258 24-58 (194)
26 COG1752 RssA Predicted esteras 24.5 81 0.0018 31.2 3.6 30 221-252 35-64 (306)
27 cd07205 Pat_PNPLA6_PNPLA7_NTE1 23.9 86 0.0019 28.0 3.4 33 223-257 26-58 (175)
28 cd07229 Pat_TGL3_like Triacylg 23.6 1E+02 0.0022 32.3 4.3 35 221-258 107-141 (391)
29 COG3208 GrsT Predicted thioest 22.2 34 0.00074 33.6 0.4 22 225-256 74-95 (244)
30 PF01764 Lipase_3: Lipase (cla 21.0 49 0.0011 27.9 1.1 9 227-235 66-74 (140)
31 TIGR03056 bchO_mg_che_rel puta 20.9 70 0.0015 29.4 2.2 20 223-244 93-112 (278)
No 1
>KOG1202|consensus
Probab=99.92 E-value=1.1e-25 Score=244.41 Aligned_cols=198 Identities=27% Similarity=0.378 Sum_probs=166.4
Q ss_pred CCcchhHHHHhhhccccccc--cceeeeccc-----cccCCCC--C-------CChhHHHHHHHhhhChhHHHHHHHHHh
Q psy9444 131 APENFNGLIESIEKKAIDVK--RALTILSQL-----VLENSAG--A-------LKLKIAEIASDKTAETAFANTLIPILE 194 (395)
Q Consensus 131 ~~~~~~~L~~~i~~~~i~~~--r~~~~~~~~-----~~~~s~~--~-------QGsQ~~gMGr~L~~~pvFr~~l~~~~~ 194 (395)
-|.+|-.|++.|+..|++.| |||+++... +.+...+ + .||||+||+++||+-+.||+++.+|++
T Consensus 455 ~D~~~l~llndi~s~p~~~~pFRGY~vl~~e~~~~ev~~~~~~eRPiwfiysGMGsQW~~Ma~~LMkl~~F~dsi~~~ae 534 (2376)
T KOG1202|consen 455 DDLELLSLLNDIASVPAPLHPFRGYAVLGGERGGPEVQQVPAGERPIWFIYSGMGSQWAGMAKDLMKLERFRDSIQRSAE 534 (2376)
T ss_pred chHHHHHHHHHHhcCCccCCcccceEEeccccCCcceeecCCCCcceEEEEeCCcchhhHHHHHHhhhHHHHHHHHHHHh
Confidence 57788899999999999999 999999982 2222222 2 999999999999999999999999999
Q ss_pred hCCcCCCCee-eccCCCc-chHHHHHHHHh---------------cCCCcEEEecCCChhHHHHHHhcCCCCHHHHHHHH
Q psy9444 195 SEPMLSVDLT-VHSNAPE-NFNGLIESIDR---------------AGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCA 257 (395)
Q Consensus 195 ~l~~~g~~l~-~~~~~~~-~l~~l~~s~~~---------------~I~PdavvGHSlG~~E~AAAyaAGalTLedai~lv 257 (395)
.++++|.|+. .+.+.++ .|+++.+++.+ +|+||.++|||+| |+.|+|++|++|.|+++.++
T Consensus 535 ~l~~~gldv~~vL~~s~~~tfdn~l~sfvsitAiQiaLtDlLs~lgi~PDGIvGHS~G--Elgc~YaDGclt~EqtvlaA 612 (2376)
T KOG1202|consen 535 VLKPFGLDVIDVLTRSDESTFDNILNSFVSITAIQIALTDLLSCLGIRPDGIVGHSLG--ELGCGYADGCLTQEQTVLAA 612 (2376)
T ss_pred hhcccCcchhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccc--hhcccccccccCHHHHHHHH
Confidence 9999999998 6655555 78877776532 3999999999999 99999999999999999999
Q ss_pred HHHhHhhhhccCCCCcccccccCCCceeeeecCcccccccccC------CCCCCceeeecCccccHHHHHHHHccCchhh
Q psy9444 258 YWRGRSILECKLAPGRNDFNGEKRPVWYVFSGMGSQWAGMDFN------GEKRPVWYVFSGMGSQWAGMVKGLLHIPVFD 331 (395)
Q Consensus 258 ~~Rg~lm~~~~~~~G~MaAvg~~~r~~~V~v~l~~~~~~~~i~------~~n~p~~fVFSGqGsq~~~Mg~~L~~~pVFr 331 (395)
||||+.+.+...++|+|+| ++++.+.....+| |.|+.-.+++||+.+....|..+|...++|.
T Consensus 613 YwRG~sild~~l~kGaMAA-----------VGLsWEq~~~~~P~~~~paCHNs~D~~TiSGp~a~v~~~v~qL~~~gvFa 681 (2376)
T KOG1202|consen 613 YWRGQSILDTHLPKGAMAA-----------VGLSWEQCKSRCPPDVVPACHNSKDNVTISGPQASVFAFVEQLRAEGVFA 681 (2376)
T ss_pred HHcCceeccccCCCcchhh-----------hcCCHHHHhccCCCcccccccCCCCceEecCChHHHHHHHHHhhhcCeee
Confidence 9999999988778999998 4555444444443 4678888999999999999999999999999
Q ss_pred HHHHHHHHHh
Q psy9444 332 QSIRKSAEAL 341 (395)
Q Consensus 332 ~~L~~~d~aL 341 (395)
+.++..--++
T Consensus 682 k~V~t~G~aF 691 (2376)
T KOG1202|consen 682 KEVRTGGYAF 691 (2376)
T ss_pred eEecCCCccc
Confidence 8877654333
No 2
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=99.86 E-value=9.8e-24 Score=207.84 Aligned_cols=154 Identities=20% Similarity=0.158 Sum_probs=114.1
Q ss_pred CCChhHHHHHHHhhh-ChhHHHHHHHHHhhCCc-CCCCee-eccCCCc--chHHHHHHHH---------------hcCCC
Q psy9444 167 ALKLKIAEIASDKTA-ETAFANTLIPILESEPM-LSVDLT-VHSNAPE--NFNGLIESID---------------RAGRP 226 (395)
Q Consensus 167 ~QGsQ~~gMGr~L~~-~pvFr~~l~~~~~~l~~-~g~~l~-~~~~~~~--~l~~l~~s~~---------------~~I~P 226 (395)
.|||||+|||++||+ +|.||+.+++|++.++. .|+++. .+.+.++ .+.++..+++ .+++|
T Consensus 6 GQGsq~~gMg~~L~~~~p~f~~~~~~~~~~l~~~~g~~l~~~l~~~~~~~~l~~~~~~qpai~~~~~al~~~l~~~Gi~P 85 (318)
T PF00698_consen 6 GQGSQYPGMGRDLYENNPVFRETIDRCDEILKELLGFSLLELLFEGPESEDLNDTEYAQPAIFAIQVALARLLRSWGIKP 85 (318)
T ss_dssp -TTS--TTTTHHHHHH-HHHHHHHHHHHHHHTSHHTS-HHHHHHHTTHCHHHTSHHHHHHHHHHHHHHHHHHHHHTTHCE
T ss_pred CcchhhHhHHHHHHHcChhhHHHHHhhhhhhhcccccchhhhhhcccccccccchheecchhhhhhhhhhhhhccccccc
Confidence 399999999999997 79999999999999887 699987 5555542 4444444332 24999
Q ss_pred cEEEecCCChhHHHHHHhcCCCCHHHHHHHHHHHhHhhhhccCCCCcccccccCCCceeeeecCcccccccccCCCCCCc
Q psy9444 227 SIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPGRNDFNGEKRPVWYVFSGMGSQWAGMDFNGEKRPV 306 (395)
Q Consensus 227 davvGHSlG~~E~AAAyaAGalTLedai~lv~~Rg~lm~~~~~~~G~MaAvg~~~r~~~V~v~l~~~~~~~~i~~~n~p~ 306 (395)
|+++|||+| ||+|+|++|++|++|++++++.||++|.+.. .+|+|+++....... ... ....-.+.+.|+|.
T Consensus 86 ~~v~GhSlG--E~aA~~aaG~ls~e~a~~lv~~R~~~m~~~~-~~g~m~av~~~~~~~--~~~---~~~~v~ia~~Ns~~ 157 (318)
T PF00698_consen 86 DAVIGHSLG--EYAALVAAGALSLEDALRLVYERARLMDEAA-PPGAMLAVRGEEEEE--KLA---LPPDVEIANINSPR 157 (318)
T ss_dssp SEEEESTTH--HHHHHHHTTSSSHHHHHHHHHHHHHHHHHHS-TSEEEEEEESHHHHH--HHH---TTTTEEEEEEEETT
T ss_pred ceeeccchh--hHHHHHHCCccchhhhhhhHHHHHHHHHHhh-hcccccchhhhHHhh--hcc---ccccceeeeecccc
Confidence 999999999 9999999999999999999999999998765 678998632200000 000 00012345678999
Q ss_pred eeeecCccccHHHHHHHHccCc
Q psy9444 307 WYVFSGMGSQWAGMVKGLLHIP 328 (395)
Q Consensus 307 ~fVFSGqGsq~~~Mg~~L~~~p 328 (395)
.++++|..++...+.+.+.+..
T Consensus 158 q~visG~~~~l~~~~~~l~~~~ 179 (318)
T PF00698_consen 158 QVVISGEREALEALVERLKAEG 179 (318)
T ss_dssp EEEEEEEHHHHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHhhccc
Confidence 9999999999999988887443
No 3
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=99.82 E-value=1e-20 Score=182.12 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=108.7
Q ss_pred CCChhHHHHHHHhhh-ChhHHHHHHHHHhhCCcCCCCee-eccCCCc-chHHHH--------------HHH-Hhc-CCCc
Q psy9444 167 ALKLKIAEIASDKTA-ETAFANTLIPILESEPMLSVDLT-VHSNAPE-NFNGLI--------------ESI-DRA-GRPS 227 (395)
Q Consensus 167 ~QGsQ~~gMGr~L~~-~pvFr~~l~~~~~~l~~~g~~l~-~~~~~~~-~l~~l~--------------~s~-~~~-I~Pd 227 (395)
.||+||+|||++||+ +|.||+.+++|++.+ |+++. .+...+. .++++. ..| ..+ ++|+
T Consensus 9 Gqg~~~~~m~~~l~~~~p~~~~~~~~~~~~l---g~~~~~~~~~~~~~~~~~~~~~q~~i~~~~~al~~~l~~~g~i~p~ 85 (290)
T TIGR00128 9 GQGSQTVGMGKDLYEQYPIAKELFDQASEAL---GYDLKKLCQEGPAEELNKTQYTQPALYVVSAILYLKLKEQGGLKPD 85 (290)
T ss_pred CCCcchhhhHHHHHHcCHHHHHHHHHHHHHh---CcCHHHHHhCCCHHHhccccchhHHHHHHHHHHHHHHHHcCCCCCC
Confidence 399999999999995 899999999999875 77776 3332211 222111 112 235 9999
Q ss_pred EEEecCCChhHHHHHHhcCCCCHHHHHHHHHHHhHhhhhcc-CCCCccccc-ccCCCceeeeecCcccccccccCCCCCC
Q psy9444 228 IQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECK-LAPGRNDFN-GEKRPVWYVFSGMGSQWAGMDFNGEKRP 305 (395)
Q Consensus 228 avvGHSlG~~E~AAAyaAGalTLedai~lv~~Rg~lm~~~~-~~~G~MaAv-g~~~r~~~V~v~l~~~~~~~~i~~~n~p 305 (395)
+++|||+| ||+|+|++|++|+||++++++.||++|++.. ...|+|+++ +.+.....-....... ..-.+.+.|+|
T Consensus 86 ~v~GhS~G--E~aAa~~aG~ls~eda~~lv~~r~~~~~~~~~~~~g~m~av~~~~~~~~~~~l~~~~~-~~v~ia~~nsp 162 (290)
T TIGR00128 86 FAAGHSLG--EYSALVAAGALDFETALKLVKKRGELMQEAVPEGGGAMAAVIGLDEEQLAQACEEATE-NDVDLANFNSP 162 (290)
T ss_pred EEeecCHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEeCCCHHHHHHHHHhcCC-CcEEEEEECCC
Confidence 99999999 9999999999999999999999999998763 236788763 2221110000000000 01124467899
Q ss_pred ceeeecCccccHHHHHHHHcc
Q psy9444 306 VWYVFSGMGSQWAGMVKGLLH 326 (395)
Q Consensus 306 ~~fVFSGqGsq~~~Mg~~L~~ 326 (395)
..++++|+......+...|..
T Consensus 163 ~~~visG~~~~l~~l~~~l~~ 183 (290)
T TIGR00128 163 GQVVISGTKDGVEAAAALFKE 183 (290)
T ss_pred CCEEEECCHHHHHHHHHHHHH
Confidence 999999999999999887663
No 4
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=99.82 E-value=7.8e-21 Score=183.93 Aligned_cols=155 Identities=18% Similarity=0.096 Sum_probs=114.0
Q ss_pred CCChhHHHHHHHhhh-ChhHHHHHHHHHhhCCcC-CCCee-eccCCCc---chHHHHHHH---------------HhcCC
Q psy9444 167 ALKLKIAEIASDKTA-ETAFANTLIPILESEPML-SVDLT-VHSNAPE---NFNGLIESI---------------DRAGR 225 (395)
Q Consensus 167 ~QGsQ~~gMGr~L~~-~pvFr~~l~~~~~~l~~~-g~~l~-~~~~~~~---~l~~l~~s~---------------~~~I~ 225 (395)
.||+||+|||++||+ +|.||+.+++|++.++.+ |+++. .+...++ .++++..++ ..+++
T Consensus 3 GQG~q~~~m~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~~~~~~~l~~~~~~q~~i~~~~~a~~~~l~~~Gi~ 82 (298)
T smart00827 3 GQGSQWPGMGRELYETEPVFRAALDECDAALQPLLGWSLLDVLFGEDGAASLLRRTEVAQPALFAVQVALARLWRSWGVR 82 (298)
T ss_pred CCchhHHHHHHHHHHcCHHHHHHHHHHHHHHHHhcCCCHHHHHcCCCCchhhhcccchhHHHHHHHHHHHHHHHHHcCCc
Confidence 399999999999996 899999999999998765 88876 4332221 222222221 22599
Q ss_pred CcEEEecCCChhHHHHHHhcCCCCHHHHHHHHHHHhHhhhhccCCCCcccccccCCCceeeeecCcccccccccCCCCCC
Q psy9444 226 PSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPGRNDFNGEKRPVWYVFSGMGSQWAGMDFNGEKRP 305 (395)
Q Consensus 226 PdavvGHSlG~~E~AAAyaAGalTLedai~lv~~Rg~lm~~~~~~~G~MaAvg~~~r~~~V~v~l~~~~~~~~i~~~n~p 305 (395)
|++++|||+| ||+|+|++|++|++|++++++.||++|++.. ..|+|++++.+.....-.... ......+.+.|+|
T Consensus 83 p~~~~GhSlG--E~aA~~~ag~~~~~~~l~l~~~r~~~~~~~~-~~g~m~av~~~~~~~~~~l~~--~~~~~~ia~~ns~ 157 (298)
T smart00827 83 PDAVVGHSLG--EIAAAYVAGVLSLEDAARLVAARGRLMQALP-GGGAMLAVGLSEEEVEELLAG--YGGRVSVAAVNGP 157 (298)
T ss_pred ccEEEecCHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC-CCCeEEEEeCCHHHHHHHHHh--cCCcEEEEEEcCC
Confidence 9999999999 9999999999999999999999999998753 368998744333221100000 0001234567889
Q ss_pred ceeeecCccccHHHHHHHHcc
Q psy9444 306 VWYVFSGMGSQWAGMVKGLLH 326 (395)
Q Consensus 306 ~~fVFSGqGsq~~~Mg~~L~~ 326 (395)
..++++|..+.+..+...+..
T Consensus 158 ~~~visG~~~~l~~l~~~l~~ 178 (298)
T smart00827 158 SSVVLSGDEDAVDELAAALEA 178 (298)
T ss_pred CCEEEECCHHHHHHHHHHHHH
Confidence 999999999999999887763
No 5
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=99.78 E-value=7e-20 Score=178.17 Aligned_cols=144 Identities=15% Similarity=0.069 Sum_probs=107.0
Q ss_pred CCChhHHHHHHHhhhChhHHHHHHHHHhhCCcCCCCeeeccCCCcchHHHHHH--------------H-HhcCCCcEEEe
Q psy9444 167 ALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIES--------------I-DRAGRPSIQCG 231 (395)
Q Consensus 167 ~QGsQ~~gMGr~L~~~pvFr~~l~~~~~~l~~~g~~l~~~~~~~~~l~~l~~s--------------~-~~~I~PdavvG 231 (395)
.||+||+|||++|+++|+||+.+++|++.+ ++++..+. .++.+.++..+ | ..+++|++++|
T Consensus 7 GqG~q~~~m~~~l~~~p~~~~~~~~~~~~l---~~~~~~~~-~~~~l~~~~~~qp~i~~~q~al~~~l~~~g~~P~~v~G 82 (295)
T TIGR03131 7 GQGSQRAGMLAELPDHPAVAAVLAEASDVL---GIDPRELD-DAEALASTRSAQLCILAAGVAAWRALLALLPRPSAVAG 82 (295)
T ss_pred CcchhhhhHHHHHHhCHHHHHHHHHHHHHh---CcCHHHcC-CHhhhccchhhhHHHHHHHHHHHHHHHhcCCCCcEEee
Confidence 399999999999987899999999999886 44554221 11112111111 1 23689999999
Q ss_pred cCCChhHHHHHHhcCCCCHHHHHHHHHHHhHhhhhccCCCCcccccccCCCceeeeecCcccccc-------cccCCCCC
Q psy9444 232 HFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPGRNDFNGEKRPVWYVFSGMGSQWAG-------MDFNGEKR 304 (395)
Q Consensus 232 HSlG~~E~AAAyaAGalTLedai~lv~~Rg~lm~~~~~~~G~MaAvg~~~r~~~V~v~l~~~~~~-------~~i~~~n~ 304 (395)
||+| |++|+|++|++|++|++++++.||++|++.....++|++ +.+.+.+... -.+.+.|+
T Consensus 83 hS~G--E~aAa~~aG~~s~e~a~~lv~~r~~~~~~~~~~~~~m~a----------v~~~~~~~~~~~l~~~~v~ia~~Ns 150 (295)
T TIGR03131 83 YSVG--EYAAAVVAGVLTFDDALRLVALRAALMDQAVPGGYGMLA----------VLGLDLAAVEALIAKHGVYLAIINA 150 (295)
T ss_pred cCHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEE----------EeCCCHHHHHHHHHHcCEEEEEEcC
Confidence 9999 999999999999999999999999999865333557864 2233332221 13456789
Q ss_pred CceeeecCccccHHHHHHHHcc
Q psy9444 305 PVWYVFSGMGSQWAGMVKGLLH 326 (395)
Q Consensus 305 p~~fVFSGqGsq~~~Mg~~L~~ 326 (395)
|..++++|.......+...+.+
T Consensus 151 p~~~visG~~~~l~~l~~~l~~ 172 (295)
T TIGR03131 151 PDQVVIAGSRAALRAVAELARA 172 (295)
T ss_pred CCCEEEECCHHHHHHHHHHHHh
Confidence 9999999999999999888764
No 6
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=99.78 E-value=1.3e-19 Score=179.86 Aligned_cols=146 Identities=18% Similarity=0.163 Sum_probs=114.5
Q ss_pred CCChhHHHHHHHhhh-ChhHHHHHHHHHhhCCcCCCCee-eccCCCc-chHHHHHHHHh-----------------cCCC
Q psy9444 167 ALKLKIAEIASDKTA-ETAFANTLIPILESEPMLSVDLT-VHSNAPE-NFNGLIESIDR-----------------AGRP 226 (395)
Q Consensus 167 ~QGsQ~~gMGr~L~~-~pvFr~~l~~~~~~l~~~g~~l~-~~~~~~~-~l~~l~~s~~~-----------------~I~P 226 (395)
.|||||.|||++||+ ++.+++.+++.++.+ ++++. ++.++++ .+..+.+++|. +++|
T Consensus 10 GQGsQ~~gMg~~l~~~~~~a~~~~~~a~~~l---~~~l~~i~~~~p~~~L~~T~~tQPal~~~s~a~~~~l~~~~~~~~p 86 (310)
T COG0331 10 GQGSQSLGMGKDLYENSPEAKETFDEADEAL---GFDLWALVFEGPEEELNLTQNTQPALLLVSLAAYRVLAEQGLGVKP 86 (310)
T ss_pred CchHHHHHhHHHHHhccHHHHHHHHHHHHHh---cccHHHHhcCCCHHHhcccchhhHHHHHHHHHHHHHHHHhcCCCCC
Confidence 499999999999996 678999998888776 66777 5566665 45555555432 3899
Q ss_pred cEEEecCCChhHHHHHHhcCCCCHHHHHHHHHHHhHhhhhcc-CCCCcccccccCCCceeeeecCcccccc---------
Q psy9444 227 SIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECK-LAPGRNDFNGEKRPVWYVFSGMGSQWAG--------- 296 (395)
Q Consensus 227 davvGHSlG~~E~AAAyaAGalTLedai~lv~~Rg~lm~~~~-~~~G~MaAvg~~~r~~~V~v~l~~~~~~--------- 296 (395)
++++|||+| ||+|.+++|+++++|+++++..||.+|++.- ..+|+|+++ .+.+.+...
T Consensus 87 ~~~aGHSlG--EysAl~~ag~~~~ed~~~Lv~~RG~~M~~a~p~~~g~Maav----------~gl~~e~v~~~~~~~~~~ 154 (310)
T COG0331 87 DFVAGHSLG--EYSALAAAGVLSFEDALKLVRKRGKLMQEAVPRGEGGMAAV----------LGLDDEQVEKACEEAAQG 154 (310)
T ss_pred ceeecccHh--HHHHHHHcccccHHHHHHHHHHHHHHHHHHccCCCccHHHH----------cCCCHHHHHHHHHHhccC
Confidence 999999999 9999999999999999999999999999883 456899862 333332221
Q ss_pred --cccCCCCCCceeeecCccccHHHHHHHHccC
Q psy9444 297 --MDFNGEKRPVWYVFSGMGSQWAGMVKGLLHI 327 (395)
Q Consensus 297 --~~i~~~n~p~~fVFSGqGsq~~~Mg~~L~~~ 327 (395)
-.+.+.|.|..+|++|...........+.+.
T Consensus 155 ~~v~iaN~N~~~QiVIsG~~~ale~a~~~~~~~ 187 (310)
T COG0331 155 TVVEIANYNSPGQIVISGTKEALEKAAEILKEA 187 (310)
T ss_pred CeEEEeeeCCCCcEEEECCHHHHHHHHHHHHHh
Confidence 1234578899999999999999888777643
No 7
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=99.73 E-value=8.5e-18 Score=167.82 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=106.1
Q ss_pred CCChhHHHHHHHhhhChhHHHHHHHHHhhCCcCCCCee-eccCCCc-chHHHHHHHH---------------hcC-----
Q psy9444 167 ALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLT-VHSNAPE-NFNGLIESID---------------RAG----- 224 (395)
Q Consensus 167 ~QGsQ~~gMGr~L~~~pvFr~~l~~~~~~l~~~g~~l~-~~~~~~~-~l~~l~~s~~---------------~~I----- 224 (395)
.||+||+|||+++.++|.|++.+++|++.+ |+++. .+.++++ .++++..+++ .++
T Consensus 46 GQGsq~~gm~~~~~~~p~~~~~~~~~~~~l---g~~l~~~~~~~~~~~l~~~~~~qp~i~~~~~a~~~~l~~~g~~~~~~ 122 (343)
T PLN02752 46 GQGAQAVGMGKEAAEVPAAKALFDKASEIL---GYDLLDVCVNGPKEKLDSTVVSQPAIYVASLAAVEKLRARDGGQAVI 122 (343)
T ss_pred CCCcchhhHHHHHHhCHHHHHHHHHHHHHh---CCCHHHHHhcCCHHHHhcchhhhHHHHHHHHHHHHHHHhcCCCcccc
Confidence 399999999999435899999999998764 78876 4433332 3333222211 123
Q ss_pred -CCcEEEecCCChhHHHHHHhcCCCCHHHHHHHHHHHhHhhhhcc-CCCCccccc-ccCCCceeeeecC-c---cccccc
Q psy9444 225 -RPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECK-LAPGRNDFN-GEKRPVWYVFSGM-G---SQWAGM 297 (395)
Q Consensus 225 -~PdavvGHSlG~~E~AAAyaAGalTLedai~lv~~Rg~lm~~~~-~~~G~MaAv-g~~~r~~~V~v~l-~---~~~~~~ 297 (395)
+|++++|||+| ||+|+|++|++++++++++++.||++|++.. ..+|+|+++ +.+.....-.... . .....-
T Consensus 123 ~~~~~~~GHSlG--E~aA~~~AG~ls~e~al~lv~~R~~~m~~~~~~~~g~m~av~g~~~~~~~~~l~~~~~~~~~~~~v 200 (343)
T PLN02752 123 DSVDVCAGLSLG--EYTALVFAGALSFEDGLKLVKLRGEAMQAAADAGPSGMVSVIGLDSDKVQELCAAANEEVGEDDVV 200 (343)
T ss_pred cCCCeeeeccHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCccEEEEeCCCHHHHHHHHHHhhhccCCCCeE
Confidence 56789999999 9999999999999999999999999998763 346888762 2222111000000 0 000012
Q ss_pred ccCCCCCCceeeecCccccHHHHHHHHc
Q psy9444 298 DFNGEKRPVWYVFSGMGSQWAGMVKGLL 325 (395)
Q Consensus 298 ~i~~~n~p~~fVFSGqGsq~~~Mg~~L~ 325 (395)
.+.+.|+|..++++|....+..+...+.
T Consensus 201 ~IA~~Nsp~~~vIsG~~~~l~~l~~~l~ 228 (343)
T PLN02752 201 QIANYLCPGNYAVSGGKKGIDAVEAKAK 228 (343)
T ss_pred EEEEEcCCCCEEEECcHHHHHHHHHHHH
Confidence 3456789999999999999999877665
No 8
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=99.68 E-value=7.1e-18 Score=202.01 Aligned_cols=159 Identities=13% Similarity=0.087 Sum_probs=114.5
Q ss_pred CChhHHHHHHHhhh-ChhHHHHHHHHHhhCCcC-CCCee-ec-----cCC-----Cc-chHHHHHHHH------------
Q psy9444 168 LKLKIAEIASDKTA-ETAFANTLIPILESEPML-SVDLT-VH-----SNA-----PE-NFNGLIESID------------ 221 (395)
Q Consensus 168 QGsQ~~gMGr~L~~-~pvFr~~l~~~~~~l~~~-g~~l~-~~-----~~~-----~~-~l~~l~~s~~------------ 221 (395)
|||||+|||++||. +|.||+.+++|++.+... +.++. .+ .+. .+ .+.++.++++
T Consensus 588 QGSQy~gMgreL~~~~P~fr~~ld~~d~~l~~~~~~~L~~~l~p~~~~~~~~~~~~~~~L~~t~~aQPaI~a~q~Al~~l 667 (2582)
T TIGR02813 588 QGSQYLNMGRELACNFPEVRQAAADMDSVFTQAGKGALSPVLYPIPVFNDESRKAQEEALTNTQHAQSAIGTLSMGQYKL 667 (2582)
T ss_pred CCchhHHHHHHHHhcCHHHHHHHHHHHHHhhhhcCCcHHHHhccccccccccccchhhhhccchhHHHHHHHHHHHHHHH
Confidence 99999999999995 899999999999988764 33333 11 111 11 2333333222
Q ss_pred ---hcCCCcEEEecCCChhHHHHHHhcCCCCHHHHHHHHHHHhHhhhhccC--CCCcccccccCCCceeeeecCccccc-
Q psy9444 222 ---RAGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKL--APGRNDFNGEKRPVWYVFSGMGSQWA- 295 (395)
Q Consensus 222 ---~~I~PdavvGHSlG~~E~AAAyaAGalTLedai~lv~~Rg~lm~~~~~--~~G~MaAvg~~~r~~~V~v~l~~~~~- 295 (395)
.+|+|++++|||+| ||+|+|++|++|++|++++++.||++|.+... ..|.|+++..... ......
T Consensus 668 L~~~Gi~Pd~v~GHSlG--E~aAa~aAGvls~edal~Lv~~Rg~lm~~~~~~~~~G~M~AV~l~~~-------~~~~~v~ 738 (2582)
T TIGR02813 668 FTQAGFKADMTAGHSFG--ELSALCAAGVISDDDYMMLAFSRGQAMAAPTGEADIGFMYAVILAVV-------GSPTVIA 738 (2582)
T ss_pred HHHcCCccceeecCCHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccCCCCceeEEEEcccc-------ccHHHHH
Confidence 25999999999999 99999999999999999999999999987632 3588976322110 000000
Q ss_pred -------ccccCCCCCCceeeecCccccHHHHHHHHccCchhhHHHH
Q psy9444 296 -------GMDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIR 335 (395)
Q Consensus 296 -------~~~i~~~n~p~~fVFSGqGsq~~~Mg~~L~~~pVFr~~L~ 335 (395)
.-.+.+.|+|..+|++|.......+.+.|.+.+++.+.|.
T Consensus 739 ~~l~~~~~V~IA~~NsP~qvVISG~~~ai~~l~~~L~~~Gi~a~~L~ 785 (2582)
T TIGR02813 739 NCIKDFEGVSIANYNSPTQLVIAGVSTQIQIAAKALKEKGFKAIPLP 785 (2582)
T ss_pred HHhccCCCEEEEEEecCCCEEEECCHHHHHHHHHHHHhCCCeEEECC
Confidence 1235578999999999999999999988875554444443
No 9
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=99.66 E-value=1e-16 Score=169.29 Aligned_cols=164 Identities=13% Similarity=0.076 Sum_probs=108.9
Q ss_pred CCChhHHHHHHHhhh-ChhHHHHHHHHHhhCCcCCCCeeeccCC---Cc-chHHH-----------HHHH--HhcCCCcE
Q psy9444 167 ALKLKIAEIASDKTA-ETAFANTLIPILESEPMLSVDLTVHSNA---PE-NFNGL-----------IESI--DRAGRPSI 228 (395)
Q Consensus 167 ~QGsQ~~gMGr~L~~-~pvFr~~l~~~~~~l~~~g~~l~~~~~~---~~-~l~~l-----------~~s~--~~~I~Pda 228 (395)
.|||||+|||++||. +|+||+.+++|.+..+.+..+..+-... .+ .+.++ ...| ..+|+|++
T Consensus 189 GqGsqy~gMGr~L~~~~P~fr~~ld~~~~L~~~L~~~~~~~~~~~~~~~~~l~q~alfav~~~~aLa~ll~~~~GI~Pda 268 (538)
T TIGR02816 189 GVGTVYADMFNDFHQYFPALFAKLEREGDLKAMLQAEDIYGEDPKHAAEMSLGDLAIAGVGSSYLLTQLLCDEFAIKPDF 268 (538)
T ss_pred CCchHHHHHHHHHHhhCHHHHHHHHhcCCHHHHhccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 399999999999996 8999999999864433332111100000 00 11111 1112 23699999
Q ss_pred EEecCCChhHHHHHHhcCCCCHHHHHHHHHHHhHhhhhccCCCCcccccccC--------CCcee-eeecCccccccc--
Q psy9444 229 QCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPGRNDFNGEK--------RPVWY-VFSGMGSQWAGM-- 297 (395)
Q Consensus 229 vvGHSlG~~E~AAAyaAGalTLedai~lv~~Rg~lm~~~~~~~G~MaAvg~~--------~r~~~-V~v~l~~~~~~~-- 297 (395)
++|||+| ||+|+|++|+++++|++..+..|+++|.... .|.|+++... ...|. .++..+.+....
T Consensus 269 v~GHSlG--E~aAa~aAGvls~~dal~~v~~rs~L~~~~~--rG~mmavr~a~~~~~~~~~~~~~~avV~a~~~~V~~~L 344 (538)
T TIGR02816 269 ALGYSKG--EASMWASLGVWKNPHALIEKTQTDPIFTSAI--SGKLTAVREAWQLDDTAAEIQWNSFVVRCEAAPIEALL 344 (538)
T ss_pred EeecCHH--HHHHHHHhCCCCcHHHHHHHHHhhHHhcccc--ChhhhhhhhhhccccccccccccceeecCCHHHHHHHh
Confidence 9999999 9999999999999999999999999997643 4777653210 00111 123333332221
Q ss_pred ------ccCCCCCCceeeecCccccHHHHHHHHccCchhhHHHH
Q psy9444 298 ------DFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIR 335 (395)
Q Consensus 298 ------~i~~~n~p~~fVFSGqGsq~~~Mg~~L~~~pVFr~~L~ 335 (395)
.+...|+ ..+|++|.......+.+.|...+++.+.+.
T Consensus 345 ~~~~~V~IAaiN~-~q~VISG~~~Ai~~l~~~L~~~Gi~~r~L~ 387 (538)
T TIGR02816 345 KDFPHAYLAIIQG-DTCVIAGCEAQCKALLAALGKRGIAANRVT 387 (538)
T ss_pred ccCCCeEEEEeCC-CCeEeeCCHHHHHHHHHHHHhCCeeeeecc
Confidence 2334566 589999999999999999986666655553
No 10
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.60 E-value=1.1e-16 Score=180.70 Aligned_cols=244 Identities=17% Similarity=0.066 Sum_probs=154.5
Q ss_pred hhhccchhhhhhhhhcchhhcccCcce-e-eeeEEeecCCcchhHHHHhhhccccc-cccceeeecc------------c
Q psy9444 95 AEIASDKTAETAFANTLIPILESEPML-S-VDLTVHSNAPENFNGLIESIEKKAID-VKRALTILSQ------------L 159 (395)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~L~~~i~~~~i~-~~r~~~~~~~------------~ 159 (395)
-.-|.++++++.+|.+|+.+++..+-. + .|+...++...+-...+..+-.+... .-+++.-+.. .
T Consensus 443 ~lSAk~~~~L~~~a~~l~~~l~~~~~~~~l~dia~Tl~~gR~~~~~R~~~va~~~eel~~~L~~~~~~~~~~~~~~~~~~ 522 (1061)
T COG3321 443 VLSAKTAERLAATAPRLADRLELQGGLLSLADVAYTLQAGRPHFEHRLAVVANDREELEAGLRAFAAGKAKALSGVGADD 522 (1061)
T ss_pred eeecCCHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhhhhhccceeEEEeCCHHHHHHHHHHHhcCCCCccceecccC
Confidence 344678889999999999999998877 5 66665554432211111000000000 0011111110 0
Q ss_pred c---ccCCCCCCChhHHHHHHHhhh-ChhHHHHHHHHHhhCCcC-CCCee-eccCCCc-----------chHHHHH----
Q psy9444 160 V---LENSAGALKLKIAEIASDKTA-ETAFANTLIPILESEPML-SVDLT-VHSNAPE-----------NFNGLIE---- 218 (395)
Q Consensus 160 ~---~~~s~~~QGsQ~~gMGr~L~~-~pvFr~~l~~~~~~l~~~-g~~l~-~~~~~~~-----------~l~~l~~---- 218 (395)
. .......||+||.|||++||+ +|+|+.+++.|+..+..+ ++++. .++.... .+-.+..
T Consensus 523 ~~~~~vfvf~gqgsq~~~mg~el~~~~p~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~~Qp~lfai~~ala~ 602 (1061)
T COG3321 523 SGKKTVFVFPGQGSQWAGMGRELYALEPVFASAFDALEALLHRLLGFSLPEVIFAPDYPFLESIDFAQPALFAVSVALAA 602 (1061)
T ss_pred CCCceEEEeCchHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHcCCcccceecCCCCccccCcchhhhHHHHHHHHHHH
Confidence 0 000111299999999999996 899999999998877653 66655 3332211 1111111
Q ss_pred HHH-hcCCCcEEEecCCChhHHHHHHhcCCCCHHHHHHHHHHHhHhhhhccCCCCcccccccCCCce-eeeecCcccccc
Q psy9444 219 SID-RAGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPGRNDFNGEKRPVW-YVFSGMGSQWAG 296 (395)
Q Consensus 219 s~~-~~I~PdavvGHSlG~~E~AAAyaAGalTLedai~lv~~Rg~lm~~~~~~~G~MaAvg~~~r~~-~V~v~l~~~~~~ 296 (395)
.|. .+++|++++|||+| |++|||++|++|++|+++++..||++|.... ..|+|+++..+.... .-+.... ...
T Consensus 603 l~~s~gv~p~~viGhS~g--E~aaA~~aGv~s~~d~~~~v~~Rg~lm~~~~-~~G~m~~v~~~~~~~~~~~~~~~--~~~ 677 (1061)
T COG3321 603 LWRSWGVIPGAVIGHSLG--ELAAAVAAGVLSLEDALRVVATRGRLMQQLA-GEGAMLAVELSLLAEVQELLALG--RPQ 677 (1061)
T ss_pred HHHhcCCcCccccCcCHH--HHHHHHHhccCChhhhhHhhhhcchhhccCC-CCcchhhhhcCccchhhHHhhcc--ccc
Confidence 111 26999999999999 9999999999999999999999999999843 238998754443111 0000000 011
Q ss_pred cccCCCCCCceeeecCccccHHHHHHHHccCchhhHHHHHHHHHhhc
Q psy9444 297 MDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRG 343 (395)
Q Consensus 297 ~~i~~~n~p~~fVFSGqGsq~~~Mg~~L~~~pVFr~~L~~~d~aL~~ 343 (395)
..+...|+|..++++|+..+...+...+...+++.+.+.......++
T Consensus 678 v~ia~~n~P~~~vi~g~~~~i~~l~~~~~~~~~~~~~~~v~~a~hs~ 724 (1061)
T COG3321 678 VPLAAVNSPQQVVIAGDPEAIAALIARLQAQGVRARRLAVSHAFHSP 724 (1061)
T ss_pred eeEEEecCCceEEecCCHHHHHHHHHHHhccCcccceeeeeeccccH
Confidence 23446789999999999999999999998766666666554444443
No 11
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=99.35 E-value=3.9e-13 Score=132.67 Aligned_cols=84 Identities=25% Similarity=0.400 Sum_probs=71.7
Q ss_pred eeeecCccccHHHHHHHHc-cCchhhHHHHHHHHHhhc-CCCChHHHhccCCC-CcchhhhhHHHHHHHHHHHHhhHHHH
Q psy9444 307 WYVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRG-ENFDLIPVITSEDA-DTFEHILNSFVSIAAVQDSDTFEHIL 383 (395)
Q Consensus 307 ~fVFSGqGsq~~~Mg~~L~-~~pVFr~~L~~~d~aL~~-lG~sL~d~L~~~~~-~~~~~t~~aQPai~AvQvAL~~~~lL 383 (395)
+|+|||||+||.+|+++|+ .+|+|++.+++|++++++ .|+++.+.+.+++. +...++.++||++|++|+|+++ +|
T Consensus 1 vFlFpGQGsq~~gMg~~L~~~~p~f~~~~~~~~~~l~~~~g~~l~~~l~~~~~~~~l~~~~~~qpai~~~~~al~~--~l 78 (318)
T PF00698_consen 1 VFLFPGQGSQYPGMGRDLYENNPVFRETIDRCDEILKELLGFSLLELLFEGPESEDLNDTEYAQPAIFAIQVALAR--LL 78 (318)
T ss_dssp EEEE--TTS--TTTTHHHHHH-HHHHHHHHHHHHHHTSHHTS-HHHHHHHTTHCHHHTSHHHHHHHHHHHHHHHHH--HH
T ss_pred cEEECCcchhhHhHHHHHHHcChhhHHHHHhhhhhhhcccccchhhhhhcccccccccchheecchhhhhhhhhhh--hh
Confidence 5999999999999999999 689999999999999998 89999999987664 4458899999999999999999 99
Q ss_pred HHcCccchh
Q psy9444 384 NSFVSIAAV 392 (395)
Q Consensus 384 ~swG~~~~~ 392 (395)
++||+.|++
T Consensus 79 ~~~Gi~P~~ 87 (318)
T PF00698_consen 79 RSWGIKPDA 87 (318)
T ss_dssp HHTTHCESE
T ss_pred cccccccce
Confidence 999999985
No 12
>KOG2926|consensus
Probab=99.24 E-value=4.3e-12 Score=126.08 Aligned_cols=147 Identities=13% Similarity=0.104 Sum_probs=108.2
Q ss_pred CChhHHHHHHHhhhChhHHHHHHHHHhhCCcCCCCee-eccCCCc-chHHHHHHHHhc------------------CC-C
Q psy9444 168 LKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLT-VHSNAPE-NFNGLIESIDRA------------------GR-P 226 (395)
Q Consensus 168 QGsQ~~gMGr~L~~~pvFr~~l~~~~~~l~~~g~~l~-~~~~~~~-~l~~l~~s~~~~------------------I~-P 226 (395)
||+||.|||++++++|.-|..+++|.+.+ |+|+. ++.++|. .++++...++++ ++ -
T Consensus 71 QG~q~vgm~q~~l~~p~a~~~~~~A~~vl---~YdLlki~~~gP~e~ldrT~~~QpAI~~~SlAa~E~l~~~~p~~ie~~ 147 (386)
T KOG2926|consen 71 QGAQSVGMGQYLLQNPAARRLFAEASNVL---GYDLLKICVNGPKEKLDRTVIAQPAIDVSSLAALEQLRLLGPSIIENL 147 (386)
T ss_pred CChhhhhhhHHHHhCcchhHHHHHHHHHh---hHHHHHHHhcCccchhhcccccccceecccHHHHHhccccCcchhhee
Confidence 99999999999999999999999988765 89998 7778775 566655544432 22 4
Q ss_pred cEEEecCCChhHHHHHHhcCCCCHHHHHHHHHHHhHhhhhc-cCCCCcccccccCCCceeeeecCccccc----------
Q psy9444 227 SIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILEC-KLAPGRNDFNGEKRPVWYVFSGMGSQWA---------- 295 (395)
Q Consensus 227 davvGHSlG~~E~AAAyaAGalTLedai~lv~~Rg~lm~~~-~~~~G~MaAvg~~~r~~~V~v~l~~~~~---------- 295 (395)
++.+|||+| ||+|.+.+|+++++++++++..|+..|+.+ +.-.++|.. + ...+....
T Consensus 148 ~~~aGfSlG--Ey~alvfa~aLsFs~alKlVk~Ra~AMs~a~~~~~~~m~~---------~-~~~p~sk~~~~~~~a~~~ 215 (386)
T KOG2926|consen 148 VVTAGFSLG--EYAALVFAGALSFSSALKLVKARAEAMSEASELVASGMVM---------I-LGLPTSKVQKACASANQL 215 (386)
T ss_pred eeeccccHH--HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccce---------e-ecCcHhHHHHHHhhhHHH
Confidence 667899999 999999999999999999999999999987 333455542 1 12221111
Q ss_pred -------ccccCCCCCCceeeecCccccHHHHHHHHccCch
Q psy9444 296 -------GMDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPV 329 (395)
Q Consensus 296 -------~~~i~~~n~p~~fVFSGqGsq~~~Mg~~L~~~pV 329 (395)
.-.+++.+.|...|++|....+.-+.+.-.+++.
T Consensus 216 ~~~qe~~~~~VANyl~~~~~VvsG~~~~Le~lee~~~sf~~ 256 (386)
T KOG2926|consen 216 SASQEYPVCEVANYLSPGQRVVSGLVKALESLEENAKSFKI 256 (386)
T ss_pred hhhccCCeeeeeccCCCCcEEeeCcHHHHHHHHHHHHhhhh
Confidence 1124456779999999998877665532224443
No 13
>KOG1202|consensus
Probab=99.22 E-value=2.5e-11 Score=134.14 Aligned_cols=119 Identities=36% Similarity=0.526 Sum_probs=108.5
Q ss_pred CcccccccCCCceeeeecCcccccccccCCCCCCceeeecCccccHHHHHHHHccCchhhHHHHHHHHHhhcCCCChHHH
Q psy9444 272 GRNDFNGEKRPVWYVFSGMGSQWAGMDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPV 351 (395)
Q Consensus 272 G~MaAvg~~~r~~~V~v~l~~~~~~~~i~~~n~p~~fVFSGqGsq~~~Mg~~L~~~pVFr~~L~~~d~aL~~lG~sL~d~ 351 (395)
.+|.+..+++|.|.++.+........+++...+|+.|++||.|+||.+|+.+|++-+.|++.|.+|++.+++.|+++.+.
T Consensus 467 ~s~p~~~~pFRGY~vl~~e~~~~ev~~~~~~eRPiwfiysGMGsQW~~Ma~~LMkl~~F~dsi~~~ae~l~~~gldv~~v 546 (2376)
T KOG1202|consen 467 ASVPAPLHPFRGYAVLGGERGGPEVQQVPAGERPIWFIYSGMGSQWAGMAKDLMKLERFRDSIQRSAEVLKPFGLDVIDV 546 (2376)
T ss_pred hcCCccCCcccceEEeccccCCcceeecCCCCcceEEEEeCCcchhhHHHHHHhhhHHHHHHHHHHHhhhcccCcchhhh
Confidence 46778889999999887765455556777788999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcchhhhhHHHHHHHHHHHHhhHHHHHHcCccchh
Q psy9444 352 ITSEDADTFEHILNSFVSIAAVQDSDTFEHILNSFVSIAAV 392 (395)
Q Consensus 352 L~~~~~~~~~~t~~aQPai~AvQvAL~~~~lL~swG~~~~~ 392 (395)
|++.++.+++++.++..++.|+|+||.+ +|...|+.||-
T Consensus 547 L~~s~~~tfdn~l~sfvsitAiQiaLtD--lLs~lgi~PDG 585 (2376)
T KOG1202|consen 547 LTRSDESTFDNILNSFVSITAIQIALTD--LLSCLGIRPDG 585 (2376)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCCCCc
Confidence 9999888888899999999999999999 99999999983
No 14
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=99.21 E-value=2.1e-11 Score=117.49 Aligned_cols=83 Identities=24% Similarity=0.302 Sum_probs=74.1
Q ss_pred CceeeecCccccHHHHHHHHc-cCchhhHHHHHHHHHhhcCCCChHHHhccCCCCcchhhhhHHHHHHHHHHHHhhHHHH
Q psy9444 305 PVWYVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQDSDTFEHIL 383 (395)
Q Consensus 305 p~~fVFSGqGsq~~~Mg~~L~-~~pVFr~~L~~~d~aL~~lG~sL~d~L~~~~~~~~~~t~~aQPai~AvQvAL~~~~lL 383 (395)
..+|+|+|||+||.+|+++|+ .+|.|++.+++|++++ |+++.+.+.+++.+...++.++||++|++|+|+++ +|
T Consensus 2 ~~~~~f~Gqg~~~~~m~~~l~~~~p~~~~~~~~~~~~l---g~~~~~~~~~~~~~~~~~~~~~q~~i~~~~~al~~--~l 76 (290)
T TIGR00128 2 KIAYVFPGQGSQTVGMGKDLYEQYPIAKELFDQASEAL---GYDLKKLCQEGPAEELNKTQYTQPALYVVSAILYL--KL 76 (290)
T ss_pred CEEEEECCCCcchhhhHHHHHHcCHHHHHHHHHHHHHh---CcCHHHHHhCCCHHHhccccchhHHHHHHHHHHHH--HH
Confidence 368999999999999999999 7999999999999986 99999998865544456788999999999999999 99
Q ss_pred HHcC-ccchh
Q psy9444 384 NSFV-SIAAV 392 (395)
Q Consensus 384 ~swG-~~~~~ 392 (395)
++|| +.|++
T Consensus 77 ~~~g~i~p~~ 86 (290)
T TIGR00128 77 KEQGGLKPDF 86 (290)
T ss_pred HHcCCCCCCE
Confidence 9999 88874
No 15
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=99.14 E-value=9.9e-11 Score=117.09 Aligned_cols=86 Identities=22% Similarity=0.249 Sum_probs=75.6
Q ss_pred CCCCCceeeecCccccHHHHHHHHccCchhhHHHHHHHHHhhcCCCChHHHhccCCCCcchhhhhHHHHHHHHHHHHhhH
Q psy9444 301 GEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQDSDTFE 380 (395)
Q Consensus 301 ~~n~p~~fVFSGqGsq~~~Mg~~L~~~pVFr~~L~~~d~aL~~lG~sL~d~L~~~~~~~~~~t~~aQPai~AvQvAL~~~ 380 (395)
...++.+|+|+|||+||.+|++++.++|.|++.+++|++.+ |+++.+.+.+++.+...++.++||++|++|+|+++
T Consensus 35 ~~~~~~a~lFpGQGsq~~gm~~~~~~~p~~~~~~~~~~~~l---g~~l~~~~~~~~~~~l~~~~~~qp~i~~~~~a~~~- 110 (343)
T PLN02752 35 DYKPTTAFLFPGQGAQAVGMGKEAAEVPAAKALFDKASEIL---GYDLLDVCVNGPKEKLDSTVVSQPAIYVASLAAVE- 110 (343)
T ss_pred CCCCCEEEEECCCCcchhhHHHHHHhCHHHHHHHHHHHHHh---CCCHHHHHhcCCHHHHhcchhhhHHHHHHHHHHHH-
Confidence 34568999999999999999999558999999999999876 99999998776554457889999999999999999
Q ss_pred HHHHHcCccch
Q psy9444 381 HILNSFVSIAA 391 (395)
Q Consensus 381 ~lL~swG~~~~ 391 (395)
+|++||+.|+
T Consensus 111 -~l~~~g~~~~ 120 (343)
T PLN02752 111 -KLRARDGGQA 120 (343)
T ss_pred -HHHhcCCCcc
Confidence 9999998764
No 16
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=99.05 E-value=2.8e-10 Score=110.91 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=68.3
Q ss_pred ceeeecCccccHHHHHHHHccCchhhHHHHHHHHHhhcCCCChHHHhccCCCCcchhhhhHHHHHHHHHHHHhhHHHHHH
Q psy9444 306 VWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQDSDTFEHILNS 385 (395)
Q Consensus 306 ~~fVFSGqGsq~~~Mg~~L~~~pVFr~~L~~~d~aL~~lG~sL~d~L~~~~~~~~~~t~~aQPai~AvQvAL~~~~lL~s 385 (395)
++|+|+|||+||.+|+++|.++|.|++.+++|++.+ |+++.+ +. +.+...++.++||++|++|+|+++ +|++
T Consensus 1 ~~~~F~GqG~q~~~m~~~l~~~p~~~~~~~~~~~~l---~~~~~~-~~--~~~~l~~~~~~qp~i~~~q~al~~--~l~~ 72 (295)
T TIGR03131 1 IALLFPGQGSQRAGMLAELPDHPAVAAVLAEASDVL---GIDPRE-LD--DAEALASTRSAQLCILAAGVAAWR--ALLA 72 (295)
T ss_pred CEEEECCcchhhhhHHHHHHhCHHHHHHHHHHHHHh---CcCHHH-cC--CHhhhccchhhhHHHHHHHHHHHH--HHHh
Confidence 378999999999999999988899999999999887 788877 32 122346788999999999999999 9999
Q ss_pred cCccchh
Q psy9444 386 FVSIAAV 392 (395)
Q Consensus 386 wG~~~~~ 392 (395)
||+.|+.
T Consensus 73 ~g~~P~~ 79 (295)
T TIGR03131 73 LLPRPSA 79 (295)
T ss_pred cCCCCcE
Confidence 9998864
No 17
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=99.05 E-value=3.7e-10 Score=109.48 Aligned_cols=81 Identities=27% Similarity=0.395 Sum_probs=72.7
Q ss_pred ecCccccHHHHHHHHc-cCchhhHHHHHHHHHhhc-CCCChHHHhccCCCC--cchhhhhHHHHHHHHHHHHhhHHHHHH
Q psy9444 310 FSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRG-ENFDLIPVITSEDAD--TFEHILNSFVSIAAVQDSDTFEHILNS 385 (395)
Q Consensus 310 FSGqGsq~~~Mg~~L~-~~pVFr~~L~~~d~aL~~-lG~sL~d~L~~~~~~--~~~~t~~aQPai~AvQvAL~~~~lL~s 385 (395)
|+|||+||.+|+++|+ .+|.|++.+++|++++.+ .|+++.+.+.+++.+ ...++.++||++|++|+|+++ +|++
T Consensus 1 F~GQG~q~~~m~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~~~~~~~l~~~~~~q~~i~~~~~a~~~--~l~~ 78 (298)
T smart00827 1 FTGQGSQWPGMGRELYETEPVFRAALDECDAALQPLLGWSLLDVLFGEDGAASLLRRTEVAQPALFAVQVALAR--LWRS 78 (298)
T ss_pred CCCCchhHHHHHHHHHHcCHHHHHHHHHHHHHHHHhcCCCHHHHHcCCCCchhhhcccchhHHHHHHHHHHHHH--HHHH
Confidence 8999999999999999 799999999999999987 699999998765432 246788999999999999999 9999
Q ss_pred cCccchh
Q psy9444 386 FVSIAAV 392 (395)
Q Consensus 386 wG~~~~~ 392 (395)
+|+.|+.
T Consensus 79 ~Gi~p~~ 85 (298)
T smart00827 79 WGVRPDA 85 (298)
T ss_pred cCCcccE
Confidence 9999874
No 18
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.85 E-value=3.8e-09 Score=128.14 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=75.0
Q ss_pred CCCceeeecCccccHHHHHHHHc-cCchhhHHHHHHHHHhhc-CCCChHHHhccC-----C-----CCcchhhhhHHHHH
Q psy9444 303 KRPVWYVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRG-ENFDLIPVITSE-----D-----ADTFEHILNSFVSI 370 (395)
Q Consensus 303 n~p~~fVFSGqGsq~~~Mg~~L~-~~pVFr~~L~~~d~aL~~-lG~sL~d~L~~~-----~-----~~~~~~t~~aQPai 370 (395)
.++++|+|+|||+||.+|+++|+ .+|+|++.+++|++.+.. .++++.+.++.. . ...+.++.++||++
T Consensus 578 ~~kvaflFpGQGSQy~gMgreL~~~~P~fr~~ld~~d~~l~~~~~~~L~~~l~p~~~~~~~~~~~~~~~L~~t~~aQPaI 657 (2582)
T TIGR02813 578 SGKVAALFAGQGSQYLNMGRELACNFPEVRQAAADMDSVFTQAGKGALSPVLYPIPVFNDESRKAQEEALTNTQHAQSAI 657 (2582)
T ss_pred CCceEEEeCCCCchhHHHHHHHHhcCHHHHHHHHHHHHHhhhhcCCcHHHHhccccccccccccchhhhhccchhHHHHH
Confidence 35789999999999999999999 799999999999999987 567788776421 1 11236788999999
Q ss_pred HHHHHHHhhHHHHHHcCccchh
Q psy9444 371 AAVQDSDTFEHILNSFVSIAAV 392 (395)
Q Consensus 371 ~AvQvAL~~~~lL~swG~~~~~ 392 (395)
|++|+|+++ +|++||+.|++
T Consensus 658 ~a~q~Al~~--lL~~~Gi~Pd~ 677 (2582)
T TIGR02813 658 GTLSMGQYK--LFTQAGFKADM 677 (2582)
T ss_pred HHHHHHHHH--HHHHcCCccce
Confidence 999999999 99999999985
No 19
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=98.79 E-value=8.8e-09 Score=109.46 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=63.5
Q ss_pred CCCceeeecCccccHHHHHHHHc-cCchhhHHHHHHHHHhhcCCCChHHHhccCC-----CCcchhhhhHHHHHHH--HH
Q psy9444 303 KRPVWYVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGENFDLIPVITSED-----ADTFEHILNSFVSIAA--VQ 374 (395)
Q Consensus 303 n~p~~fVFSGqGsq~~~Mg~~L~-~~pVFr~~L~~~d~aL~~lG~sL~d~L~~~~-----~~~~~~t~~aQPai~A--vQ 374 (395)
.++++|+|||||+||.+|+++|+ .+|+|++.+++|. +|.+.+..+. .....++.+.||++|+ +|
T Consensus 180 ~~~vaFvFpGqGsqy~gMGr~L~~~~P~fr~~ld~~~--------~L~~~L~~~~~~~~~~~~~~~~~l~q~alfav~~~ 251 (538)
T TIGR02816 180 KAGLAFVYPGVGTVYADMFNDFHQYFPALFAKLEREG--------DLKAMLQAEDIYGEDPKHAAEMSLGDLAIAGVGSS 251 (538)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhhCHHHHHHHHhcC--------CHHHHhccccccccchhhhhhhhhHhHHHHHHHHH
Confidence 45789999999999999999999 7999999999874 4445443221 1112456688999996 59
Q ss_pred HHHhhHHHH-HHcCccchh
Q psy9444 375 DSDTFEHIL-NSFVSIAAV 392 (395)
Q Consensus 375 vAL~~~~lL-~swG~~~~~ 392 (395)
++|++ +| ++||+.|++
T Consensus 252 ~aLa~--ll~~~~GI~Pda 268 (538)
T TIGR02816 252 YLLTQ--LLCDEFAIKPDF 268 (538)
T ss_pred HHHHH--HHHHhcCCCCCE
Confidence 99999 99 599999985
No 20
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=98.70 E-value=2.3e-08 Score=99.75 Aligned_cols=83 Identities=24% Similarity=0.288 Sum_probs=73.7
Q ss_pred CCceeeecCccccHHHHHHHHc-cCchhhHHHHHHHHHhhcCCCChHHHhccCCCCcchhhhhHHHHHHHHHHHHhhHHH
Q psy9444 304 RPVWYVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQDSDTFEHI 382 (395)
Q Consensus 304 ~p~~fVFSGqGsq~~~Mg~~L~-~~pVFr~~L~~~d~aL~~lG~sL~d~L~~~~~~~~~~t~~aQPai~AvQvAL~~~~l 382 (395)
++..|+|+|||+||.+|+.+|+ +++.+++.+++.++.+ ++++.++++++++..+..|.++||++++++++..+ .
T Consensus 2 ~~~A~~FpGQGsQ~~gMg~~l~~~~~~a~~~~~~a~~~l---~~~l~~i~~~~p~~~L~~T~~tQPal~~~s~a~~~--~ 76 (310)
T COG0331 2 SKTAFVFPGQGSQSLGMGKDLYENSPEAKETFDEADEAL---GFDLWALVFEGPEEELNLTQNTQPALLLVSLAAYR--V 76 (310)
T ss_pred CcceEEeCCchHHHHHhHHHHHhccHHHHHHHHHHHHHh---cccHHHHhcCCCHHHhcccchhhHHHHHHHHHHHH--H
Confidence 3578999999999999999999 6789999999999987 88999999877666678999999999999999999 9
Q ss_pred HHHcC--ccch
Q psy9444 383 LNSFV--SIAA 391 (395)
Q Consensus 383 L~swG--~~~~ 391 (395)
|+.-| ..|+
T Consensus 77 l~~~~~~~~p~ 87 (310)
T COG0331 77 LAEQGLGVKPD 87 (310)
T ss_pred HHHhcCCCCCc
Confidence 99876 5554
No 21
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.51 E-value=1.2e-07 Score=108.06 Aligned_cols=86 Identities=30% Similarity=0.366 Sum_probs=77.2
Q ss_pred CceeeecCccccHHHHHHHHc-cCchhhHHHHHHHHHhhc-CCCChHHHhccCCCCcchhhhhHHHHHHHHHHHHhhHHH
Q psy9444 305 PVWYVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRG-ENFDLIPVITSEDADTFEHILNSFVSIAAVQDSDTFEHI 382 (395)
Q Consensus 305 p~~fVFSGqGsq~~~Mg~~L~-~~pVFr~~L~~~d~aL~~-lG~sL~d~L~~~~~~~~~~t~~aQPai~AvQvAL~~~~l 382 (395)
..+|+|+|||+||.+|+.+|+ .+|+|+.+++.|+..+.. +|+++.+.+.....+.+..+...||++|++|++|++ +
T Consensus 526 ~~vfvf~gqgsq~~~mg~el~~~~p~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~~Qp~lfai~~ala~--l 603 (1061)
T COG3321 526 KTVFVFPGQGSQWAGMGRELYALEPVFASAFDALEALLHRLLGFSLPEVIFAPDYPFLESIDFAQPALFAVSVALAA--L 603 (1061)
T ss_pred ceEEEeCchHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHcCCcccceecCCCCccccCcchhhhHHHHHHHHHHH--H
Confidence 489999999999999999999 799999999999999887 899999988876543355677899999999999999 9
Q ss_pred HHHcCccchh
Q psy9444 383 LNSFVSIAAV 392 (395)
Q Consensus 383 L~swG~~~~~ 392 (395)
|++||++|+-
T Consensus 604 ~~s~gv~p~~ 613 (1061)
T COG3321 604 WRSWGVIPGA 613 (1061)
T ss_pred HHhcCCcCcc
Confidence 9999999974
No 22
>KOG2926|consensus
Probab=98.15 E-value=1e-06 Score=88.37 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=72.9
Q ss_pred CceeeecCccccHHHHHHHHccCchhhHHHHHHHHHhhcCCCChHHHhccCCCCcchhhhhHHHHHHHHHHHHhhHHHHH
Q psy9444 305 PVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQDSDTFEHILN 384 (395)
Q Consensus 305 p~~fVFSGqGsq~~~Mg~~L~~~pVFr~~L~~~d~aL~~lG~sL~d~L~~~~~~~~~~t~~aQPai~AvQvAL~~~~lL~ 384 (395)
-.+++|+|||.||.+|++.++++|..++.++.|.+++ |++|++.+.+++.+..++|.++||+|++-.+|..+ .|+
T Consensus 63 ~s~iLFPGQG~q~vgm~q~~l~~p~a~~~~~~A~~vl---~YdLlki~~~gP~e~ldrT~~~QpAI~~~SlAa~E--~l~ 137 (386)
T KOG2926|consen 63 TSVILFPGQGAQSVGMGQYLLQNPAARRLFAEASNVL---GYDLLKICVNGPKEKLDRTVIAQPAIDVSSLAALE--QLR 137 (386)
T ss_pred ceEEEeCCCChhhhhhhHHHHhCcchhHHHHHHHHHh---hHHHHHHHhcCccchhhcccccccceecccHHHHH--hcc
Confidence 4689999999999999999999999999999999998 99999999998888788999999999999999999 888
Q ss_pred HcC
Q psy9444 385 SFV 387 (395)
Q Consensus 385 swG 387 (395)
..|
T Consensus 138 ~~~ 140 (386)
T KOG2926|consen 138 LLG 140 (386)
T ss_pred ccC
Confidence 777
No 23
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=30.57 E-value=78 Score=28.30 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=29.9
Q ss_pred hcCCCcEEEecCCChhHHHHHHhcCCCCHHHHHHHH
Q psy9444 222 RAGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCA 257 (395)
Q Consensus 222 ~~I~PdavvGHSlG~~E~AAAyaAGalTLedai~lv 257 (395)
.++.||.+.|-|.| -+.|++.+-..+.++.....
T Consensus 23 ~gi~~d~v~GtSaG--Ai~aa~~a~g~~~~~~~~~~ 56 (172)
T cd07198 23 RGPLIDIIAGTSAG--AIVAALLASGRDLEEALLLL 56 (172)
T ss_pred cCCCCCEEEEECHH--HHHHHHHHcCCCHHHHHHHH
Confidence 36889999999999 99999999989988877765
No 24
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=30.19 E-value=38 Score=24.55 Aligned_cols=50 Identities=28% Similarity=0.348 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhccccccceehhhhccchhhhhhhhhcchhhcccCcceeee
Q psy9444 71 VKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVD 124 (395)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (395)
+.|++.||..+.-.... +.+.||+..----++-+.+++.-|+..+++..|
T Consensus 2 l~ral~iL~~l~~~~~~----~t~~eia~~~gl~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 2 LERALRILEALAESGGP----LTLSEIARALGLPKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHHHHHCHHCTBSC----EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHcCCCC----CCHHHHHHHHCcCHHHHHHHHHHHHHCcCeecC
Confidence 56888888766544332 577888766555677788888888888887654
No 25
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=26.24 E-value=1e+02 Score=27.71 Aligned_cols=35 Identities=11% Similarity=-0.061 Sum_probs=27.2
Q ss_pred hcCCCcEEEecCCChhHHHHHHhcCCCCHHHHHHHHH
Q psy9444 222 RAGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCAY 258 (395)
Q Consensus 222 ~~I~PdavvGHSlG~~E~AAAyaAGalTLedai~lv~ 258 (395)
.++.||.++|-|.| -+.|+..+-..+.++......
T Consensus 24 ~~~~~d~i~GtSaG--ai~aa~~a~g~~~~~~~~~~~ 58 (194)
T cd07207 24 AGILKKRVAGTSAG--AITAALLALGYSAADIKDILK 58 (194)
T ss_pred cCCCcceEEEECHH--HHHHHHHHcCCCHHHHHHHHH
Confidence 36899999999999 888877777778777554433
No 26
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=24.55 E-value=81 Score=31.18 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=24.6
Q ss_pred HhcCCCcEEEecCCChhHHHHHHhcCCCCHHH
Q psy9444 221 DRAGRPSIQCGHFTGRKEVACAYADGTLTAEQ 252 (395)
Q Consensus 221 ~~~I~PdavvGHSlG~~E~AAAyaAGalTLed 252 (395)
..++.|+++.|-|+| .+.|+..|..++.++
T Consensus 35 e~gi~~~~iaGtS~G--Aiva~l~A~g~~~~~ 64 (306)
T COG1752 35 EAGIPIDVIAGTSAG--AIVAALYAAGMDEDE 64 (306)
T ss_pred HcCCCccEEEecCHH--HHHHHHHHcCCChhH
Confidence 346999999999999 988887777766655
No 27
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=23.86 E-value=86 Score=27.97 Aligned_cols=33 Identities=18% Similarity=0.083 Sum_probs=28.3
Q ss_pred cCCCcEEEecCCChhHHHHHHhcCCCCHHHHHHHH
Q psy9444 223 AGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCA 257 (395)
Q Consensus 223 ~I~PdavvGHSlG~~E~AAAyaAGalTLedai~lv 257 (395)
++.||.++|-|.| -+.|+..+-..+.++..+..
T Consensus 26 ~~~~d~i~GtSaG--al~a~~~a~g~~~~~~~~~~ 58 (175)
T cd07205 26 GIPIDIVSGTSAG--AIVGALYAAGYSPEEIEERA 58 (175)
T ss_pred CCCeeEEEEECHH--HHHHHHHHcCCCHHHHHHHH
Confidence 5789999999999 99999988888888876654
No 28
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=23.59 E-value=1e+02 Score=32.32 Aligned_cols=35 Identities=26% Similarity=0.170 Sum_probs=29.3
Q ss_pred HhcCCCcEEEecCCChhHHHHHHhcCCCCHHHHHHHHH
Q psy9444 221 DRAGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCAY 258 (395)
Q Consensus 221 ~~~I~PdavvGHSlG~~E~AAAyaAGalTLedai~lv~ 258 (395)
..++.|+.+.|-|.| -+.||.++. .|.++-..+..
T Consensus 107 e~gl~p~~i~GtS~G--aivaa~~a~-~~~~e~~~~l~ 141 (391)
T cd07229 107 LRGLLPRIITGTATG--ALIAALVGV-HTDEELLRFLD 141 (391)
T ss_pred HcCCCCceEEEecHH--HHHHHHHHc-CCHHHHHHHHh
Confidence 456999999999999 999999988 68777766654
No 29
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.24 E-value=34 Score=33.63 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=16.6
Q ss_pred CCcEEEecCCChhHHHHHHhcCCCCHHHHHHH
Q psy9444 225 RPSIQCGHFTGRKEVACAYADGTLTAEQTILC 256 (395)
Q Consensus 225 ~PdavvGHSlG~~E~AAAyaAGalTLedai~l 256 (395)
+|=++.|||+| |.+..|-|.++
T Consensus 74 ~P~alfGHSmG----------a~lAfEvArrl 95 (244)
T COG3208 74 APFALFGHSMG----------AMLAFEVARRL 95 (244)
T ss_pred CCeeecccchh----------HHHHHHHHHHH
Confidence 57899999999 66666666444
No 30
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=21.04 E-value=49 Score=27.86 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=7.4
Q ss_pred cEEEecCCC
Q psy9444 227 SIQCGHFTG 235 (395)
Q Consensus 227 davvGHSlG 235 (395)
=.+.|||+|
T Consensus 66 i~itGHSLG 74 (140)
T PF01764_consen 66 IVITGHSLG 74 (140)
T ss_dssp EEEEEETHH
T ss_pred chhhccchH
Confidence 357899999
No 31
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=20.90 E-value=70 Score=29.40 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=15.0
Q ss_pred cCCCcEEEecCCChhHHHHHHh
Q psy9444 223 AGRPSIQCGHFTGRKEVACAYA 244 (395)
Q Consensus 223 ~I~PdavvGHSlG~~E~AAAya 244 (395)
.++|..++|||+| =..|..+
T Consensus 93 ~~~~~~lvG~S~G--g~~a~~~ 112 (278)
T TIGR03056 93 GLSPDGVIGHSAG--AAIALRL 112 (278)
T ss_pred CCCCceEEEECcc--HHHHHHH
Confidence 4688899999999 5555444
Done!