RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9444
(395 letters)
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain.
Length = 319
Score = 65.1 bits (159), Expect = 9e-12
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 307 WYVFSGMGSQWAGMVKGLLH-IPVFDQSIRKSAEALRGE-NFDLIPVITSEDADTFEHIL 364
+VFSG GSQWAGM LL PVF +I + EA + + F ++ V+ + E +
Sbjct: 1 VFVFSGQGSQWAGMGMDLLKTSPVFAAAIARCDEAFKPQYGFSVLDVLRNNPEGLLERVD 60
Query: 365 NSFVSIAAVQ 374
++ A+Q
Sbjct: 61 VVQPALFAMQ 70
Score = 39.7 bits (93), Expect = 0.002
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 188 TLIPILESEPMLSVDLTVHSNAPENFN---GLIESIDRAG-RPSIQCGHFTGRKEVACAY 243
+++ +L + P ++ P F L + G P+ GH G E+A A
Sbjct: 43 SVLDVLRNNPEGLLERVDVVQ-PALFAMQIALAALLRSYGVTPAAVVGHSLG--EIAAAV 99
Query: 244 ADGTLTAEQTILCAYWRGRSILE 266
G L+ E+ L R R + +
Sbjct: 100 VAGALSLEEAALVVALRSRLMRQ 122
>gnl|CDD|214838 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase
(PKS) enzymes.
Length = 298
Score = 52.8 bits (128), Expect = 9e-08
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 309 VFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGE-NFDLIPVITSEDADT 359
VF+G GSQWAGM + L PVF +++ + AL+ + L+ V+ ED
Sbjct: 1 VFTGQGSQWAGMGRELYETEPVFREALDECDAALQPLLGWSLLDVLLGEDGAA 53
Score = 30.4 bits (70), Expect = 1.3
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 225 RPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGR 262
RP GH +G E+A AY G L+ E RGR
Sbjct: 82 RPDAVVGHSSG--EIAAAYVAGVLSLEDAARLVAARGR 117
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 34.4 bits (79), Expect = 0.12
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 303 KRPVWYVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGEN-FDLIPVITSEDADTF 360
+ +VF G GSQWAGM + L PVF + L F L VI + D
Sbjct: 524 GKKTVFVFPGQGSQWAGMGRELYALEPVFASAFDALEALLHRLLGFSLPEVIFAPDYPFL 583
Query: 361 EHILNSFVSIAAVQ 374
E I + ++ AV
Sbjct: 584 ESIDFAQPALFAVS 597
>gnl|CDD|227139 COG4802, FtrB, Ferredoxin-thioredoxin reductase, catalytic subunit
[Energy production and conversion].
Length = 110
Score = 31.3 bits (71), Expect = 0.21
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 215 GLIESIDRAGRPSIQCGHFTGRKEV------ACAYADGTLTAEQTILCAYWRGRSILECK 268
GL + +R G PS C TG++E C Y D + C + E +
Sbjct: 37 GLASNKERYGYPSCPCRLVTGKEEEDKDIVCPCVYRDDDIREYGECYCGLYLSPEKDEAQ 96
Query: 269 LAPGRNDFNGEKR 281
P R E R
Sbjct: 97 SIPER---RAEVR 106
>gnl|CDD|236458 PRK09293, PRK09293, fructose-1,6-bisphosphatase; Provisional.
Length = 327
Score = 31.0 bits (71), Expect = 1.1
Identities = 36/149 (24%), Positives = 50/149 (33%), Gaps = 24/149 (16%)
Query: 120 MLSVDLTVHSNAPENFNGLIESIEKKAIDVKRALT------ILSQLVLENSAGALKLKIA 173
L +A LI +I A + RA+ IL EN G + K+
Sbjct: 8 FLVEQQREFPHATGELTALISAIALAAKIISRAINKGGLADILGAAGTENVQGETQKKLD 67
Query: 174 EIASDKTAETAFANTLIPILESEPM--------------LSVD-LTVHSNAPENFN-GLI 217
A++ E A + L SE ++ D L SN N + G I
Sbjct: 68 VFANEILIEALKARGHVAGLASEEEDEIVPIPENEGKYLVAYDPLDGSSNIDVNVSVGTI 127
Query: 218 ESIDRAGRPSIQCGHFT--GRKEVACAYA 244
SI RA + F G +VA Y
Sbjct: 128 FSIYRAPVGTPTEEDFLQPGNNQVAAGYV 156
>gnl|CDD|240184 cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like extracellular
protein domain, PRY1-like sub-family restricted to
fungi. The wider family of SCP containing proteins
includes plant pathogenesis-related protein 1 (PR-1),
CRISPs, mammalian cysteine-rich secretory proteins, and
allergen 5 from vespid venom. It has been proposed that
SCP domains may function as endopeptidases. PRY1 is a
yeast protein that is up-regulated in core ESCRT
mutants. This PRY1-like group also contains fruiting
body proteins SC7/14 from Schizophyllum commune.
Length = 129
Score = 29.6 bits (67), Expect = 1.4
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 231 GHFT-----GRKEVACAYADGTLTAEQTILCAYW 259
GHFT +V CAY D I+C Y
Sbjct: 89 GHFTQLVWKSTTQVGCAYKDCGGAWGWYIVCEYD 122
>gnl|CDD|223408 COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid
metabolism].
Length = 310
Score = 30.3 bits (69), Expect = 1.4
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 308 YVFSGMGSQWAGMVKGLLHIPVFDQSI---RKSAEALRGENFDLIPVITSEDADTFEHIL 364
+VF G GSQ GM K L ++ S EA FDL ++ +
Sbjct: 6 FVFPGQGSQSLGMGKDL-----YENSPEAKETFDEADEALGFDLWALVFEGPEEELNLTQ 60
Query: 365 NSFVSIAAVQ 374
N+ ++ V
Sbjct: 61 NTQPALLLVS 70
>gnl|CDD|217683 pfam03709, OKR_DC_1_N, Orn/Lys/Arg decarboxylase, N-terminal
domain. This domain has a flavodoxin-like fold, and is
termed the "wing" domain because of its position in the
overall 3D structure.
Length = 111
Score = 29.1 bits (66), Expect = 1.5
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 334 IRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAV 373
R+ AEAL +++ +++D ++ +F IAAV
Sbjct: 6 SRELAEALERTGREVVYATSTDDL---LSLIENFTDIAAV 42
>gnl|CDD|184904 PRK14940, PRK14940, DNA polymerase III subunit beta; Provisional.
Length = 367
Score = 29.8 bits (67), Expect = 2.4
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 141 SIEKKAIDVKRALTILSQLVLENSAGALKLKIA------------EIASDKTAETAFANT 188
SI ++ I K+AL+ILS ++L G+L +K I ++ + T F +
Sbjct: 15 SIAQEIISTKKALSILSNVLLAAQDGSLTIKATDTKVSFETSIPVNILAEGST-TVFCDK 73
Query: 189 LIPILESEPMLSVDLTVHSN 208
+ IL S P ++L +
Sbjct: 74 FVGILSSLPTGEIELELCDE 93
>gnl|CDD|130156 TIGR01084, mutY, A/G-specific adenine glycosylase. This equivalog
model identifies mutY members of the pfam00730
superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro
rich loop followed by a conserved aspartate). The major
members of the superfamily are nth and mutY [DNA
metabolism, DNA replication, recombination, and repair].
Length = 275
Score = 29.7 bits (67), Expect = 2.5
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 11 VIISEGEESIPADESLVSKLPGV------AVVSKLLTERRTFVLVRKAID--VKRALTIL 62
++ E P D ++ LPGV A++S L + + D VKR L+ L
Sbjct: 91 EVVEEFGGEFPQDFEDLAALPGVGRYTAGAILSFALNKPYPIL------DGNVKRVLSRL 144
Query: 63 SAQWRAIDVKRALTILSQL 81
A K+ L L
Sbjct: 145 FAVEGWPGKKKVENRLWTL 163
>gnl|CDD|112376 pfam03554, Herpes_UL73, UL73 viral envelope glycoprotein. This
family groups together the viral proteins BLRF1, U46,
53, and UL73. The UL73-like envelope glycoproteins,
which associates in a high molecular mass complex with
its counterpart, gM, induce neutralising antibody
responses in the host. These glycoprotein are highly
polymorphic, particularly in the N-terminal region.
Length = 82
Score = 27.2 bits (61), Expect = 4.6
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 9/35 (25%)
Query: 357 ADTFEHILNSFVSIAAVQDSDTFEHILNSFVSIAA 391
ADT+E L+SF SI A +LN + + A
Sbjct: 38 ADTYEPSLSSFSSIWA---------LLNVLIVLCA 63
>gnl|CDD|149766 pfam08809, DUF1799, Phage related hypothetical protein (DUF1799).
Members of this family are about 100 amino acids in
length and are uncharacterized.
Length = 83
Score = 26.9 bits (60), Expect = 5.0
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 302 EKRPVWYVFSGMGSQW---AGMVKGLLHIPVFD 331
E P +F M +QW GL + +F
Sbjct: 21 ENWPAVDLFIAMSTQWRVGPAGATGLDYSVLFA 53
>gnl|CDD|181222 PRK08073, flgL, flagellar hook-associated protein FlgL; Validated.
Length = 287
Score = 28.4 bits (63), Expect = 6.3
Identities = 11/59 (18%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 328 PVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQDS-DTFEHILNS 385
PV +++K +A++ + + + E+ + I+N + ++ +TF+ IL+
Sbjct: 180 PVI-NTLKKMVDAMQTGDQKALQPLLEENKKNLDIIINRTTEVGGTMNTVETFKTILSE 237
>gnl|CDD|184171 PRK13598, hisB, imidazoleglycerol-phosphate dehydratase;
Provisional.
Length = 193
Score = 27.5 bits (61), Expect = 9.7
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 82 VLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIES 141
++E+ A L L I E DK F++ +IP+ E+ ++S+D++ A N N
Sbjct: 67 IVEDVAITLGLAIKEALGDKRGIKRFSHQIIPMDEALVLVSLDISGRGMAFVNLNLKRSE 126
Query: 142 IEKKAID 148
I A +
Sbjct: 127 IGGLATE 133
>gnl|CDD|217100 pfam02552, CO_dh, CO dehydrogenase beta subunit/acetyl-CoA synthase
epsilon subunit. This family consists of Carbon
monoxide dehydrogenase I/II beta subunit EC:1.2.99.2 and
acetyl-CoA synthase epsilon subunit. Carbon monoxide
beta subunit catalyzes the reaction: CO + H2O + acceptor
<=> CO2 + reduced acceptor.
Length = 168
Score = 27.5 bits (61), Expect = 9.8
Identities = 27/107 (25%), Positives = 35/107 (32%), Gaps = 14/107 (13%)
Query: 144 KKAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDL 203
KKA KR L I+ VL K+K K TA + VD+
Sbjct: 33 KKA---KRPLLIVGPQVLYAENEEAKVKKILEKDLKEVATALIIAGLYD-YEPKNPKVDI 88
Query: 204 TVHSNAPENFNGLIESIDRAGRPSIQCGHFTGRKEVACAYADGTLTA 250
T N + NG G + F G V YA L++
Sbjct: 89 TQELN-DPHPNGFD------GHGNYDLVIFIG---VHYYYASQALSS 125
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.379
Gapped
Lambda K H
0.267 0.0893 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,724,125
Number of extensions: 1908517
Number of successful extensions: 1535
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1529
Number of HSP's successfully gapped: 37
Length of query: 395
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 296
Effective length of database: 6,546,556
Effective search space: 1937780576
Effective search space used: 1937780576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.6 bits)