RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9444
(395 letters)
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 96.1 bits (240), Expect = 1e-21
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 301 GEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTF 360
+RP+W++ SGMG+QW GM L+ + F SI +S EA++ + ++ S D TF
Sbjct: 489 AGERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTF 548
Query: 361 EHILNSFVSIAAVQ 374
+ I++SFVS+ A+Q
Sbjct: 549 DDIVHSFVSLTAIQ 562
Score = 50.6 bits (122), Expect = 6e-07
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 225 RPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPG 272
RP GH G EVAC YADG L+ E+ +L AYWRG+ I E L PG
Sbjct: 575 RPDGIVGHSLG--EVACGYADGCLSQEEAVLAAYWRGQCIKEAHLPPG 620
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 94.9 bits (236), Expect = 4e-21
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 286 VFSGMGSQWAGMDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGEN 345
V G G KRPVW++ SGMG+QW GM L+ + F SI +S +AL+
Sbjct: 472 VLGGEAGSQEVQQVPGSKRPVWFICSGMGAQWQGMGLSLMRLDRFRDSILRSDQALKPLG 531
Query: 346 FDLIPVITSEDADTFEHILNSFVSIAAVQ 374
+ ++ S D + I++SFVS+ ++Q
Sbjct: 532 LRVSDLLLSTDEAVLDDIVSSFVSLTSIQ 560
Score = 52.2 bits (125), Expect = 2e-07
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 225 RPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPG 272
+P GH G EVAC YADG LT E+ +L +YWRG I E + PG
Sbjct: 573 QPDGIIGHSLG--EVACGYADGCLTQEEAVLSSYWRGYCIKEANVLPG 618
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 2e-08
Identities = 89/497 (17%), Positives = 150/497 (30%), Gaps = 184/497 (37%)
Query: 2 SVTHL--RYIYVIISEGEESIPADESLVSK----------LPG--V-AVVSKLLTERRTF 46
+ L +++ + S E S V L G + A+ +KLL E T
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 47 VLVRKAIDVK---RALTIL---------SAQWRAIDVKRA--LTI-------------LS 79
++ K + +K A + SA +RA+ A + I L
Sbjct: 116 LVKTKEL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 80 QL----------VLENSAGALKLKIAEIASDKTAETAFANTL------------------ 111
L +++ SA L I + AE F L
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLS---ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 112 --IPILESEPML--------SVDLTVHSNAPENFNGLIESIEKKAIDVKRALTILSQLVL 161
IPI S P++ V + P + + T SQ ++
Sbjct: 232 LSIPI--SCPLIGVIQLAHYVVTAKLLGFTPGELRSYL-----------KGATGHSQGLV 278
Query: 162 ENSAGALKLKIAEIASDKTAETAFANTL--IPIL--------ESEPMLSVDLTVHSNAPE 211
+A A IA + E+ F + I +L E+ P S+ ++ ++ E
Sbjct: 279 --TAVA-------IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 212 NFNG-----LIESIDRAGRPSIQ------CGHFTGRKEVACAYADGTLTAEQTILCAYWR 260
N G L SI + +Q H K+V + +G A+ ++
Sbjct: 330 NNEGVPSPML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG---AKNLVVS---- 380
Query: 261 G--RSI--LECKL----APGRND-----FNGEKRPVWYVF---------SGMGSQWAGMD 298
G +S+ L L AP D F+ K F + A
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP--ASDL 438
Query: 299 FNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFD----QSIRKSAEALRGENFDLIPVITS 354
N + F+ + IPV+D +R + ++ ++ I
Sbjct: 439 INKDLVKNNVSFNA--KD--------IQIPVYDTFDGSDLRVLSGSISE---RIVDCIIR 485
Query: 355 -----EDADTFE--HIL 364
E F+ HIL
Sbjct: 486 LPVKWETTTQFKATHIL 502
Score = 51.2 bits (122), Expect = 4e-07
Identities = 51/345 (14%), Positives = 104/345 (30%), Gaps = 120/345 (34%)
Query: 79 SQLV------LENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAP 132
SQ + S A + + A D + + +++ I+ + P V+LT+H
Sbjct: 1626 SQEQGMGMDLYKTSKAA-Q-DVWNRA-DNHFKDTYGFSILDIVINNP---VNLTIHFGGE 1679
Query: 133 ------ENFNGLI-ESIEKKAIDVKRALTIL----SQLVLENSAGALKLKIAEIASDKTA 181
EN++ +I E+I + ++ + + + G L
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA----------- 1728
Query: 182 ETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESIDRAG---RPSIQCGHFTGRKE 238
T F +P L + A E + G + GH G E
Sbjct: 1729 -TQFT---------QPAL---TLM-EKA------AFEDLKSKGLIPADATFAGHSLG--E 1766
Query: 239 ----VACAYADGTLTAEQTILCAYWRGRSILEC--KLAPGRNDFNGEKRPVWYVFSGMGS 292
+ A ++ E + ++RG ++ + GR+++ GM
Sbjct: 1767 YAALASLA---DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY------------GM-- 1809
Query: 293 QWAGMDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGE-----NFD 347
+ N + + + Q + + G N++
Sbjct: 1810 ----IAINPGR----------------VAASFSQEAL--QYVVERVGKRTGWLVEIVNYN 1847
Query: 348 LIP----VI--TSEDADTFEHILNSF----VSIAAVQDSDTFEHI 382
+ V DT ++LN + I +Q S + E +
Sbjct: 1848 -VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 40.0 bits (93), Expect = 0.001
Identities = 55/282 (19%), Positives = 86/282 (30%), Gaps = 78/282 (27%)
Query: 151 RALTILSQLVLENS--------AGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVD 202
R LT LS LE+ A +L+ FA + EP +
Sbjct: 7 RPLT-LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFA------ADDEPTTPAE 59
Query: 203 LTVHSNAPENFNGLIESIDRAGRPS--IQC-----GHFT----GRKEV---ACAY---AD 245
L F G + S+ + Q F ++ A D
Sbjct: 60 LVGK------FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 246 GTLTAEQTILCAYWRGRSILECKLAPGRND--FN----GEKRPVWYVFSGMGSQWAGMDF 299
TL + ++ Y R + + N F G + + +F G G+ +
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ-LVAIFGGQGNTDDYFE- 171
Query: 300 NGEKRPVW--YVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDA 357
E R ++ Y +V L I+ SAE L +LI T+ DA
Sbjct: 172 --ELRDLYQTY---------HVLVGDL---------IKFSAETLS----ELIR--TTLDA 205
Query: 358 DT-FEHILN--SFVSIAAVQ-DSDTFEHILNSFVSIAAVQFV 395
+ F LN ++ + D D I S I +Q
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Score = 37.3 bits (86), Expect = 0.009
Identities = 28/137 (20%), Positives = 41/137 (29%), Gaps = 50/137 (36%)
Query: 291 GSQWAGM--DF---NGEKRPVW----------YVFSGMGSQWAGMVKGLLHIPVFDQSIR 335
GSQ GM D + + VW Y FS +L I V + +
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFS------------ILDI-VINNPVN 1671
Query: 336 K-------SAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQDSDTFEH---ILN- 384
+ +R EN+ + I D F I S TF +L+
Sbjct: 1672 LTIHFGGEKGKRIR-ENYSAM--IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 385 -SF-------VSIAAVQ 393
F + AA +
Sbjct: 1729 TQFTQPALTLMEKAAFE 1745
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 46.9 bits (112), Expect = 8e-06
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 301 GEKRPVWYVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGE-NFDLIPVIT-SEDA 357
+ V+ +F G GSQWAGM LL PVF IR E++ ++ + V+ + A
Sbjct: 530 DGRNVVF-LFPGQGSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDVLRQAPGA 588
Query: 358 DTFEHI 363
+ +
Sbjct: 589 PGLDRV 594
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 46.5 bits (111), Expect = 1e-05
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 304 RPVWYVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGE-NFDLIPVITSEDA 357
VF G G+QW GM + LL VF SIR AL ++ L +++
Sbjct: 552 GVAM-VFPGQGAQWQGMARDLLRESQVFADSIRDCERALAPHVDWSLTDLLSGARP 606
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 43.0 bits (100), Expect = 3e-05
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 34/63 (53%)
Query: 143 EKKAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVD 202
EK+A+ K+ L+ S LKL +A +S P L++
Sbjct: 18 EKQAL--KK---------LQAS---LKL--------------YA----D--DSAPALAIK 43
Query: 203 LTV 205
T+
Sbjct: 44 ATM 46
Score = 35.3 bits (80), Expect = 0.013
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 32/57 (56%)
Query: 71 VKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTV 127
+K+ L+ S LKL +A +S P L++ T+
Sbjct: 22 LKK---------LQAS---LKL--------------YA----D--DSAPALAIKATM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 7e-05
Identities = 45/388 (11%), Positives = 97/388 (25%), Gaps = 128/388 (32%)
Query: 82 VLENSAGALKLK-IAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIE 140
V + L + I I K A + L L S+ V V N+ L+
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSG-TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 141 SI-----------------------------------EKKAIDVKRALTILSQ---LVLE 162
I + + +++AL L ++++
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 163 NSAGALK--LKIAEIASDKTAETAFAN--------------TLIPILES-----EPMLSV 201
G+ K + ++ + T++ +L+ +P +
Sbjct: 157 GVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 202 DLTVHSNAPENFNGLIESIDRAGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRG 261
SN + + + R + Y + L +L
Sbjct: 216 RSDHSSNIKLRIHSIQAELRR---------LLKSKP-----YENCLL-----VLLNVQNA 256
Query: 262 RSI----LECK-LAPGRN----DF--NGEKRPVWYVFSGMG----------SQWAGMDFN 300
++ L CK L R DF + M ++
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 301 GEKRPVWYVFSGMGSQWAGMVKGL-LHIPVFDQSIRKSAEALRGENFDLIPVITSEDADT 359
R ++ + + +SIR +N+ + + D
Sbjct: 317 DLPRE--------------VLTTNPRRLSIIAESIRD--GLATWDNWKHV------NCDK 354
Query: 360 FEHILNSFVSIAAVQDSDTFEHILNSFV 387
I+ S + V + + + +
Sbjct: 355 LTTIIESSL---NVLEPAEYRKMFDRLS 379
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta
hydrolase-like core; 2.00A {Streptomyces coelicolor}
SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B
Length = 317
Score = 36.4 bits (85), Expect = 0.011
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 308 YVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADT 359
V G G+Q G + L +P + ++A+ DL T DAD
Sbjct: 5 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAI---GLDLAHFGTKADADE 53
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP
transacylase, , nucleophili fatty acids biosynthesis;
2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A
Length = 303
Score = 35.2 bits (82), Expect = 0.027
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 308 YVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADT 359
+ G GSQ GM+ L +P I ++A + DL + T+ +
Sbjct: 5 LLAPGQGSQTEGMLSPWLQLPGAADQIAAWSKAA---DLDLARLGTTASTEE 53
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Length = 571
Score = 32.3 bits (73), Expect = 0.26
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 194 ESEPMLSVDLTVHSNAPENFNGLIESIDRAGRPSIQCGHF 233
E E +L++D+ + N E + L ID + GHF
Sbjct: 451 EVEDILALDIALRRNDTEWYEHLPPEIDSQLVHKLYYGHF 490
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 31.1 bits (71), Expect = 0.61
Identities = 4/46 (8%), Positives = 9/46 (19%), Gaps = 6/46 (13%)
Query: 299 FNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGE 344
G V +F G + + + +
Sbjct: 92 VVGGPLRVGLLFPGQAAPVHADR------GALGHLLGDADAGTGSD 131
Score = 28.0 bits (63), Expect = 6.6
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 276 FNGEKRPVWYVFSGMGSQWAGM 297
G V +F G +
Sbjct: 92 VVGGPLRVGLLFPGQAAPVHAD 113
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 31.1 bits (70), Expect = 0.64
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 250 AEQTILCAYWRGRSILECK----LAPGRNDFNGEKRPVWYVFSGMGSQWAGMDFNGEKRP 305
A + A+ + +++ K P G+ PV + + M F P
Sbjct: 30 ANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINP 89
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 31.2 bits (70), Expect = 0.82
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 245 DGTLTAEQTILCAYWRGRSILECKLAPGRNDF----NGEKRPVWYVFSGMGSQWAGMD 298
G + ++ AY+ GR+ P + ++ +F G G+ D
Sbjct: 109 AGITAKKIGVVRAYYAGRAAAGRAPKPYDSALFRAAAENNVKIYSIFGGQGNIEEYFD 166
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside
hydrolase, thermostability, PH optimum, CLAN GH-A,
thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia
heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Length = 332
Score = 30.4 bits (68), Expect = 0.97
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 282 PVWYVFSGMGSQWAGM---DFNGEKRPVWYVFS 311
P W + +GS A +G+ VF
Sbjct: 298 PAWIHNANLGSSCADNTMFSQSGQALSSLSVFQ 330
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase,
lipid synthesis, mitochondrion transfer transferase;
HET: AE4; 1.55A {Homo sapiens}
Length = 339
Score = 30.3 bits (69), Expect = 1.0
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 308 YVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDL 348
+F G GSQ GM +GLL+ P + + L +DL
Sbjct: 29 LLFPGQGSQVVGMGRGLLNYPRVRELYAAARRVL---GYDL 66
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 30.7 bits (69), Expect = 1.1
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 250 AEQTILCAYWRGRSILECK----LAPGRNDFNGEKRPVWYVFSGMGSQWAGMDFNGEKRP 305
A + A+ + +++ K P G+ PV + + M F P
Sbjct: 30 ANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINP 89
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 30.3 bits (68), Expect = 1.3
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 11/79 (13%)
Query: 231 GHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECK----LAPGRNDFNGEKRPVWYV 286
H R+E+ A + A+ + +++ K P G+ PV
Sbjct: 18 SHMFKREEI-------IEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDT 70
Query: 287 FSGMGSQWAGMDFNGEKRP 305
+ + M F P
Sbjct: 71 IENLRQAYLRMGFEEYINP 89
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid,
acyl-carrier-protein S-malonyltransferase,
acyltransferase, transferase; 2.05A {Burkholderia
pseudomallei 1710B}
Length = 318
Score = 29.8 bits (68), Expect = 1.3
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 308 YVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADT 359
+VF G GSQ GM+ + V +++ ++++AL D+ +I AD
Sbjct: 13 FVFPGQGSQSVGMLNAFADVAVVRETLDEASDAL---GQDIGKLIADGPADE 61
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 28.8 bits (64), Expect = 1.4
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 14 SEGEESIPADESLVSKLPGVAVVSKLLTERRTFVLVRKAIDVKRALTILSAQWRAID--- 70
S G + E+L+ + + + + L + + D+ R L +L QW
Sbjct: 2 SSGSSGVIESETLIEDV--LRPLEQALEDCHGHTKKQVCDDISRRLALLREQWAGGKLSI 59
Query: 71 -VKRALTILSQLVLE-NSAGALKLKIAEIASDKTAETAF 107
VK+ + +L Q +L A + + D E +
Sbjct: 60 PVKKRMALLVQELLHHQWDAADDIHR-SLMVDHVTEVSQ 97
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 30.0 bits (67), Expect = 1.5
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 250 AEQTILCAYWRGRSILECK----LAPGRNDFNGEKRPVWYVFSGMGSQWAGMDFNGEKRP 305
A + A+ + +++ K P G+ PV + + M F P
Sbjct: 30 ANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINP 89
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 29.6 bits (66), Expect = 2.0
Identities = 17/140 (12%), Positives = 39/140 (27%), Gaps = 15/140 (10%)
Query: 244 ADGTLTAEQTILCAYWRGRSILECKLAPGR-----NDFNGEKRPVWYVFSGMGSQWAGMD 298
D TL + ++ Y R + + + +F G G+
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF- 170
Query: 299 FNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDAD 358
E R ++ + + L + AE + + +++ + +
Sbjct: 171 --EELRDLYQTYHVLVGDLIKFSAETLSELIRTTL---DAEKVFTQGLNILEWLENPSNT 225
Query: 359 TFEHIL----NSFVSIAAVQ 374
+ L S I +Q
Sbjct: 226 PDKDYLLSIPISCPLIGVIQ 245
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 29.2 bits (65), Expect = 2.4
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 329 VFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAV 373
++ IR+ AL NF ++ +D + + + V
Sbjct: 14 FKEEPIRELHRALERLNFQIVYPNDRDDLLKL---IENNARLCGV 55
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics,
protein structure initiative; 2.10A {Clostridium
perfringens}
Length = 336
Score = 28.7 bits (65), Expect = 3.8
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 308 YVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGENFDLIPVITSEDADT 359
++F+G G+Q+ GM K + + ++S+EAL D+ + ++
Sbjct: 6 FLFAGQGAQYVGMGKEFFDNFEESKEVFKRSSEAL---GIDMEELCFNDPEGL 55
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis,
malonyl-COA, acyl carrier protein TRAN (MCAT), FABD,
acyltransferase; 2.10A {Streptococcus pneumoniae}
Length = 307
Score = 28.2 bits (64), Expect = 4.1
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 308 YVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGENFDL 348
++F+G G+Q+ GM + P+ ++I ++++ L +DL
Sbjct: 6 FLFAGQGAQYLGMGRDFYDQYPIVKETIDRASQVL---GYDL 44
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53,
CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3
PDB: 1fhl_A
Length = 334
Score = 28.1 bits (62), Expect = 5.0
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 282 PVWYVFSGMGSQW---AGMDFNGEK-RPVWYVFSGM 313
P W +G+GS +D+ ++ +
Sbjct: 299 PAWIGNAGLGSSCADNLMVDYTTDEVYESIETLGEL 334
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium
cellulosum} PDB: 3rgi_A
Length = 281
Score = 27.8 bits (63), Expect = 5.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 308 YVFSGMGSQWAGMVKGL 324
Y+F G GSQ GM + L
Sbjct: 4 YMFPGQGSQAKGMGRAL 20
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 27.5 bits (62), Expect = 7.7
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 12/53 (22%)
Query: 49 VRKAIDVKRALTILSAQWRAIDVKRALTILSQLVLENSAGALKL-KIAEIASD 100
V V W IDV LV N+AG + L +A + D
Sbjct: 62 VTDRHSVAAFAQAAVDTWGRIDV---------LV--NNAGVMPLSPLAAVKVD 103
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel,
hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
Length = 678
Score = 27.6 bits (62), Expect = 8.5
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 94 IAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSN 130
+ + E + N L + + E V+ T+
Sbjct: 49 YDTVGTIALKEVTYENCLQVLADIEVTYIVERTMLDF 85
Score = 27.6 bits (62), Expect = 8.5
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 172 IAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSN 208
+ + E + N L + + E V+ T+
Sbjct: 49 YDTVGTIALKEVTYENCLQVLADIEVTYIVERTMLDF 85
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid,
decode biostructures, dried seaweed, acyltran
transferase; 2.30A {Burkholderia pseudomallei}
Length = 394
Score = 27.3 bits (61), Expect = 8.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 308 YVFSGMGSQWAGMVKGL 324
++F G GSQ GM L
Sbjct: 9 FMFPGQGSQAKGMGGAL 25
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding
channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Length = 674
Score = 27.6 bits (62), Expect = 9.0
Identities = 4/37 (10%), Positives = 16/37 (43%)
Query: 94 IAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSN 130
++ + + + ++ +TL + + E +V +
Sbjct: 33 YDQVGTQEFEDVSYESTLKALADVEVTYTVQRNILDF 69
Score = 27.6 bits (62), Expect = 9.0
Identities = 4/37 (10%), Positives = 16/37 (43%)
Query: 172 IAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSN 208
++ + + + ++ +TL + + E +V +
Sbjct: 33 YDQVGTQEFEDVSYESTLKALADVEVTYTVQRNILDF 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.379
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,847,841
Number of extensions: 356200
Number of successful extensions: 712
Number of sequences better than 10.0: 1
Number of HSP's gapped: 707
Number of HSP's successfully gapped: 57
Length of query: 395
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 299
Effective length of database: 4,021,377
Effective search space: 1202391723
Effective search space used: 1202391723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)