RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9444
(395 letters)
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Streptomyces
coelicolor A3(2) [TaxId: 100226]}
Length = 253
Score = 52.2 bits (124), Expect = 2e-08
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 308 YVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSF 367
V G G+Q G + L +P + ++A+ DL T DAD +
Sbjct: 5 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAI---GLDLAHFGTKADADEIRDTSVAQ 61
Query: 368 VSIAAVQ 374
+ A
Sbjct: 62 PLLVAAG 68
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Escherichia coli
[TaxId: 562]}
Length = 235
Score = 51.4 bits (122), Expect = 5e-08
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 308 YVFSGMGSQWAGMVKGLL-HIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNS 366
+VF G GSQ GM+ + P+ +++ +++ AL +DL + A+ +
Sbjct: 4 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAALG---YDLWALTQQGPAEELNKTWQT 60
Query: 367 FVSIAAVQ 374
++
Sbjct: 61 QPALLTAS 68
>d2hafa1 d.310.1.1 (A:15-192) Hypothetical protein VC0467 {Vibrio
cholerae [TaxId: 666]}
Length = 178
Score = 27.8 bits (61), Expect = 1.8
Identities = 15/147 (10%), Positives = 37/147 (25%), Gaps = 16/147 (10%)
Query: 175 IASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESID----------RAG 224
+A + F ++I I E ++ L +++ G+++ +D
Sbjct: 10 VAMPSMKDPYFKRSVIYICEHNQDGAMGLMINAPIDITVGGMLKQVDIEPAYPQSHQENL 69
Query: 225 RPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPGRNDFNGEKRPVW 284
+ + G + + + + + +
Sbjct: 70 KKPVFNGGPVSEDRGFILHRPRDHYESSMKMTDDIAVTTSKDILTV----LGTEAEPEGY 125
Query: 285 YVFSGMGSQWAGMDFNGE-KRPVWYVF 310
V G S W+ E W
Sbjct: 126 IVALGY-SGWSAGQLEVELTENSWLTI 151
>d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium
tetanomorphum [TaxId: 1553]}
Length = 160
Score = 26.7 bits (59), Expect = 3.3
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 108 ANTLIPILESE--PML-SVDLTVHSNAPENFNGLIESIEKKAIDVKRALTIL----SQLV 160
A IP++E E P L ++T NF + E +K ++ R T + +Q +
Sbjct: 86 AKDFIPVIEKEIAPKLIGREIT-------NFKPMAEEFDKMTVNGNRLHTAIRYGITQAI 138
Query: 161 LENSAGALKLKIAEIASD 178
L+ A K+ +AE+ D
Sbjct: 139 LDAVAKTRKVTMAEVIRD 156
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus
aculeatus) [TaxId: 5053]}
Length = 334
Score = 27.0 bits (59), Expect = 4.6
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 282 PVWYVFSGMGSQW---AGMDF-NGEKRPVWYVFSGM 313
P W +G+GS +D+ E +
Sbjct: 299 PAWIGNAGLGSSCADNLMVDYTTDEVYESIETLGEL 334
>d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 160
Score = 26.3 bits (58), Expect = 4.7
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 14/78 (17%)
Query: 108 ANTLIPILESE--PML-SVDLTVHSNAPENFNGLIESIEKKAIDVKRALTIL----SQLV 160
A IP L P+L D+ F +K ID T + SQ +
Sbjct: 86 AEHFIPFLNDHIKPLLEGRDVD-------AFLPNARFFDKLRIDGNLLHTAVRYGLSQAL 138
Query: 161 LENSAGALKLKIAEIASD 178
L+ +A A E+ D
Sbjct: 139 LDATALASGRLKTEVVCD 156
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 26.6 bits (57), Expect = 5.1
Identities = 5/51 (9%), Positives = 15/51 (29%)
Query: 319 GMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVS 369
++ L + +++ A + +D I + + L
Sbjct: 6 AIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKR 56
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator
CcpA, C-terminal domain {Bacillus megaterium [TaxId:
1404]}
Length = 275
Score = 26.6 bits (57), Expect = 5.3
Identities = 7/51 (13%), Positives = 22/51 (43%)
Query: 319 GMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVS 369
G++ + + + R + +++I + ++ D H+LN+ +
Sbjct: 7 GVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLG 57
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 25.6 bits (55), Expect = 8.7
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 201 VDLTVHSNAPENFNGLIESIDRAGRPS 227
++ V + + I+ + R RPS
Sbjct: 157 ANVGVIMSGSGSAREYIQRLGRILRPS 183
>d2gzoa1 d.310.1.1 (A:1-187) Hypotheical protein SO3346 {Shewanella
oneidensis [TaxId: 70863]}
Length = 187
Score = 25.5 bits (55), Expect = 8.9
Identities = 19/142 (13%), Positives = 38/142 (26%), Gaps = 7/142 (4%)
Query: 175 IASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESID-----RAGRPSIQ 229
IA +T F T+I + E + ++ L ++ N L+E +D + ++
Sbjct: 10 IAMPSLDDTFFERTVIYLCEHDEKGAMGLVINKPLGIEVNSLLEQMDLPTEQVSADLAMG 69
Query: 230 CGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPGRNDFNGEKRPVWYVFSG 289
G + +L + + V G
Sbjct: 70 SQVLMGGPVSQDRGFVLHTSQPYWANSTELGSGLMLTTSRDVLTAIGSKRSPDKFLVALG 129
Query: 290 MGSQWAGMDFNGE-KRPVWYVF 310
+ W+ E W
Sbjct: 130 Y-AGWSKNQLEQELADNSWLTI 150
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.379
Gapped
Lambda K H
0.267 0.0400 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,367,060
Number of extensions: 61511
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 12
Length of query: 395
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,213,086
Effective search space: 373630488
Effective search space used: 373630488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)